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<p id="t1" class="pln"><span class="n"><a href="#t1">1</a></span><span class="t"><span class="str">"""</span> </span><span class="r"></span></p>
<p id="t2" class="pln"><span class="n"><a href="#t2">2</a></span><span class="t"><span class="str">Read in data distributions.</span> </span><span class="r"></span></p>
<p id="t3" class="pln"><span class="n"><a href="#t3">3</a></span><span class="t"><span class="str">"""</span> </span><span class="r"></span></p>
<p id="t4" class="pln"><span class="n"><a href="#t4">4</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t5" class="run"><span class="n"><a href="#t5">5</a></span><span class="t"><span class="key">import</span> <span class="nam">os</span> </span><span class="r"></span></p>
<p id="t6" class="run"><span class="n"><a href="#t6">6</a></span><span class="t"><span class="key">import</span> <span class="nam">numpy</span> <span class="key">as</span> <span class="nam">np</span> </span><span class="r"></span></p>
<p id="t7" class="run"><span class="n"><a href="#t7">7</a></span><span class="t"><span class="key">import</span> <span class="nam">pandas</span> <span class="key">as</span> <span class="nam">pd</span> </span><span class="r"></span></p>
<p id="t8" class="run"><span class="n"><a href="#t8">8</a></span><span class="t"><span class="key">import</span> <span class="nam">sciris</span> <span class="key">as</span> <span class="nam">sc</span> </span><span class="r"></span></p>
<p id="t9" class="run"><span class="n"><a href="#t9">9</a></span><span class="t"><span class="key">from</span> <span class="nam">collections</span> <span class="key">import</span> <span class="nam">Counter</span> </span><span class="r"></span></p>
<p id="t10" class="run"><span class="n"><a href="#t10">10</a></span><span class="t"><span class="key">from</span> <span class="op">.</span> <span class="key">import</span> <span class="nam">base</span> <span class="key">as</span> <span class="nam">spb</span> </span><span class="r"></span></p>
<p id="t11" class="run"><span class="n"><a href="#t11">11</a></span><span class="t"><span class="key">from</span> <span class="op">.</span> <span class="key">import</span> <span class="nam">config</span> <span class="key">as</span> <span class="nam">cfg</span> </span><span class="r"></span></p>
<p id="t12" class="pln"><span class="n"><a href="#t12">12</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t13" class="pln"><span class="n"><a href="#t13">13</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t14" class="run"><span class="n"><a href="#t14">14</a></span><span class="t"><span class="key">def</span> <span class="nam">get_age_brackets_from_df</span><span class="op">(</span><span class="nam">ab_file_path</span><span class="op">)</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t15" class="pln"><span class="n"><a href="#t15">15</a></span><span class="t"> <span class="str">"""</span> </span><span class="r"></span></p>
<p id="t16" class="pln"><span class="n"><a href="#t16">16</a></span><span class="t"><span class="str"> Create a dict of age bracket ranges from ab_file_path.</span> </span><span class="r"></span></p>
<p id="t17" class="pln"><span class="n"><a href="#t17">17</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t18" class="pln"><span class="n"><a href="#t18">18</a></span><span class="t"><span class="str"> Args:</span> </span><span class="r"></span></p>
<p id="t19" class="pln"><span class="n"><a href="#t19">19</a></span><span class="t"><span class="str"> ab_file_path (string): file path to get the ends of different age brackets from</span> </span><span class="r"></span></p>
<p id="t20" class="pln"><span class="n"><a href="#t20">20</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t21" class="pln"><span class="n"><a href="#t21">21</a></span><span class="t"><span class="str"> Returns:</span> </span><span class="r"></span></p>
<p id="t22" class="pln"><span class="n"><a href="#t22">22</a></span><span class="t"><span class="str"> A dictionary with a np.ndarray of the age range that maps to each age bracket key.</span> </span><span class="r"></span></p>
<p id="t23" class="pln"><span class="n"><a href="#t23">23</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t24" class="pln"><span class="n"><a href="#t24">24</a></span><span class="t"><span class="str"> **Examples**::</span> </span><span class="r"></span></p>
<p id="t25" class="pln"><span class="n"><a href="#t25">25</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t26" class="pln"><span class="n"><a href="#t26">26</a></span><span class="t"><span class="str"> get_age_brackets_from_df(ab_file_path) returns a dictionary age_brackets, where age_brackets[0] is the age range for the first age bracket, age_brackets[1] is the age range for the second age bracket, etc.</span> </span><span class="r"></span></p>
<p id="t27" class="pln"><span class="n"><a href="#t27">27</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t28" class="pln"><span class="n"><a href="#t28">28</a></span><span class="t"><span class="str"> """</span> </span><span class="r"></span></p>
<p id="t29" class="run"><span class="n"><a href="#t29">29</a></span><span class="t"> <span class="nam">ab_df</span> <span class="op">=</span> <span class="nam">pd</span><span class="op">.</span><span class="nam">read_csv</span><span class="op">(</span><span class="nam">ab_file_path</span><span class="op">,</span> <span class="nam">header</span><span class="op">=</span><span class="key">None</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t30" class="run"><span class="n"><a href="#t30">30</a></span><span class="t"> <span class="nam">age_brackets</span> <span class="op">=</span> <span class="op">{</span><span class="op">}</span> </span><span class="r"></span></p>
<p id="t31" class="run"><span class="n"><a href="#t31">31</a></span><span class="t"> <span class="key">for</span> <span class="nam">index</span><span class="op">,</span> <span class="nam">row</span> <span class="key">in</span> <span class="nam">enumerate</span><span class="op">(</span><span class="nam">ab_df</span><span class="op">.</span><span class="nam">iterrows</span><span class="op">(</span><span class="op">)</span><span class="op">)</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t32" class="run"><span class="n"><a href="#t32">32</a></span><span class="t"> <span class="nam">age_min</span> <span class="op">=</span> <span class="nam">row</span><span class="op">[</span><span class="num">1</span><span class="op">]</span><span class="op">.</span><span class="nam">values</span><span class="op">[</span><span class="num">0</span><span class="op">]</span> </span><span class="r"></span></p>
<p id="t33" class="run"><span class="n"><a href="#t33">33</a></span><span class="t"> <span class="nam">age_max</span> <span class="op">=</span> <span class="nam">row</span><span class="op">[</span><span class="num">1</span><span class="op">]</span><span class="op">.</span><span class="nam">values</span><span class="op">[</span><span class="num">1</span><span class="op">]</span> </span><span class="r"></span></p>
<p id="t34" class="run"><span class="n"><a href="#t34">34</a></span><span class="t"> <span class="nam">age_brackets</span><span class="op">[</span><span class="nam">index</span><span class="op">]</span> <span class="op">=</span> <span class="nam">np</span><span class="op">.</span><span class="nam">arange</span><span class="op">(</span><span class="nam">age_min</span><span class="op">,</span> <span class="nam">age_max</span><span class="op">+</span><span class="num">1</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t35" class="run"><span class="n"><a href="#t35">35</a></span><span class="t"> <span class="key">return</span> <span class="nam">age_brackets</span> </span><span class="r"></span></p>
<p id="t36" class="pln"><span class="n"><a href="#t36">36</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t37" class="pln"><span class="n"><a href="#t37">37</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t38" class="run"><span class="n"><a href="#t38">38</a></span><span class="t"><span class="key">def</span> <span class="nam">get_gender_fraction_by_age_path</span><span class="op">(</span><span class="nam">datadir</span><span class="op">,</span> <span class="nam">location</span><span class="op">=</span><span class="key">None</span><span class="op">,</span> <span class="nam">state_location</span><span class="op">=</span><span class="key">None</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">=</span><span class="key">None</span><span class="op">)</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t39" class="pln"><span class="n"><a href="#t39">39</a></span><span class="t"> <span class="str">"""</span> </span><span class="r"></span></p>
<p id="t40" class="pln"><span class="n"><a href="#t40">40</a></span><span class="t"><span class="str"> Get file_path for gender fractions by age bracket. This should only be used if the data is available.</span> </span><span class="r"></span></p>
<p id="t41" class="pln"><span class="n"><a href="#t41">41</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t42" class="pln"><span class="n"><a href="#t42">42</a></span><span class="t"><span class="str"> Args:</span> </span><span class="r"></span></p>
<p id="t43" class="pln"><span class="n"><a href="#t43">43</a></span><span class="t"><span class="str"> datadir (string) : file path to the data directory</span> </span><span class="r"></span></p>
<p id="t44" class="pln"><span class="n"><a href="#t44">44</a></span><span class="t"><span class="str"> location (string) : name of the location</span> </span><span class="r"></span></p>
<p id="t45" class="pln"><span class="n"><a href="#t45">45</a></span><span class="t"><span class="str"> state_location (string) : name of the state the location is in</span> </span><span class="r"></span></p>
<p id="t46" class="pln"><span class="n"><a href="#t46">46</a></span><span class="t"><span class="str"> country_location (string) : name of the country the location is in</span> </span><span class="r"></span></p>
<p id="t47" class="pln"><span class="n"><a href="#t47">47</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t48" class="pln"><span class="n"><a href="#t48">48</a></span><span class="t"><span class="str"> Returns:</span> </span><span class="r"></span></p>
<p id="t49" class="pln"><span class="n"><a href="#t49">49</a></span><span class="t"><span class="str"> A file path to the gender fraction by age bracket data.</span> </span><span class="r"></span></p>
<p id="t50" class="pln"><span class="n"><a href="#t50">50</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t51" class="pln"><span class="n"><a href="#t51">51</a></span><span class="t"><span class="str"> """</span> </span><span class="r"></span></p>
<p id="t52" class="run"><span class="n"><a href="#t52">52</a></span><span class="t"> <span class="nam">levels</span> <span class="op">=</span> <span class="op">[</span><span class="nam">location</span><span class="op">,</span> <span class="nam">state_location</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">]</span> </span><span class="r"></span></p>
<p id="t53" class="run"><span class="n"><a href="#t53">53</a></span><span class="t"> <span class="key">if</span> <span class="nam">all</span><span class="op">(</span><span class="nam">level</span> <span class="key">is</span> <span class="key">None</span> <span class="key">for</span> <span class="nam">level</span> <span class="key">in</span> <span class="nam">levels</span><span class="op">)</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t54" class="mis show_mis"><span class="n"><a href="#t54">54</a></span><span class="t"> <span class="key">raise</span> <span class="nam">NotImplementedError</span><span class="op">(</span><span class="str">"Missing inputs. Please check that you have supplied the correct location, state_location, and country_location strings."</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t55" class="run"><span class="n"><a href="#t55">55</a></span><span class="t"> <span class="key">elif</span> <span class="nam">country_location</span> <span class="key">is</span> <span class="key">None</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t56" class="mis show_mis"><span class="n"><a href="#t56">56</a></span><span class="t"> <span class="key">raise</span> <span class="nam">NotImplementedError</span><span class="op">(</span><span class="str">"Missing country_location string. Please check that you have supplied this string."</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t57" class="run"><span class="n"><a href="#t57">57</a></span><span class="t"> <span class="key">elif</span> <span class="nam">state_location</span> <span class="key">is</span> <span class="key">None</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t58" class="run"><span class="n"><a href="#t58">58</a></span><span class="t"> <span class="key">return</span> <span class="nam">os</span><span class="op">.</span><span class="nam">path</span><span class="op">.</span><span class="nam">join</span><span class="op">(</span><span class="nam">datadir</span><span class="op">,</span> <span class="str">'demographics'</span><span class="op">,</span> <span class="str">'contact_matrices_152_countries'</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">,</span> <span class="str">'age_distributions'</span><span class="op">,</span> <span class="nam">country_location</span> <span class="op">+</span> <span class="str">f'_gender_fraction_by_age_bracket_{cfg.nbrackets}.dat'</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t59" class="run"><span class="n"><a href="#t59">59</a></span><span class="t"> <span class="key">elif</span> <span class="nam">location</span> <span class="key">is</span> <span class="key">None</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t60" class="run"><span class="n"><a href="#t60">60</a></span><span class="t"> <span class="key">return</span> <span class="nam">os</span><span class="op">.</span><span class="nam">path</span><span class="op">.</span><span class="nam">join</span><span class="op">(</span><span class="nam">datadir</span><span class="op">,</span> <span class="str">'demographics'</span><span class="op">,</span> <span class="str">'contact_matrices_152_countries'</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">,</span> <span class="nam">state_location</span><span class="op">,</span> <span class="str">'age_distributions'</span><span class="op">,</span> <span class="nam">state_location</span> <span class="op">+</span> <span class="str">f'_gender_fraction_by_age_bracket_{cfg.nbrackets}.dat'</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t61" class="pln"><span class="n"><a href="#t61">61</a></span><span class="t"> <span class="key">else</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t62" class="run"><span class="n"><a href="#t62">62</a></span><span class="t"> <span class="key">return</span> <span class="nam">os</span><span class="op">.</span><span class="nam">path</span><span class="op">.</span><span class="nam">join</span><span class="op">(</span><span class="nam">datadir</span><span class="op">,</span> <span class="str">'demographics'</span><span class="op">,</span> <span class="str">'contact_matrices_152_countries'</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">,</span> <span class="nam">state_location</span><span class="op">,</span> <span class="str">'age_distributions'</span><span class="op">,</span> <span class="nam">location</span> <span class="op">+</span> <span class="str">f'_gender_fraction_by_age_bracket_{cfg.nbrackets}.dat'</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t63" class="pln"><span class="n"><a href="#t63">63</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t64" class="pln"><span class="n"><a href="#t64">64</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t65" class="run"><span class="n"><a href="#t65">65</a></span><span class="t"><span class="key">def</span> <span class="nam">read_gender_fraction_by_age_bracket</span><span class="op">(</span><span class="nam">datadir</span><span class="op">,</span> <span class="nam">location</span><span class="op">=</span><span class="key">None</span><span class="op">,</span> <span class="nam">state_location</span><span class="op">=</span><span class="key">None</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">=</span><span class="key">None</span><span class="op">,</span> <span class="nam">file_path</span><span class="op">=</span><span class="key">None</span><span class="op">,</span> <span class="nam">use_default</span><span class="op">=</span><span class="key">False</span><span class="op">)</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t66" class="pln"><span class="n"><a href="#t66">66</a></span><span class="t"> <span class="str">"""</span> </span><span class="r"></span></p>
<p id="t67" class="pln"><span class="n"><a href="#t67">67</a></span><span class="t"><span class="str"> A dict of gender fractions by age bracket, either by location, state_location, country_location strings, or by the file_path if that's given.</span> </span><span class="r"></span></p>
<p id="t68" class="pln"><span class="n"><a href="#t68">68</a></span><span class="t"><span class="str"> If use_default, then we'll first try to look for location specific data and if that's not available we'll use default data from Seattle, WA. This</span> </span><span class="r"></span></p>
<p id="t69" class="pln"><span class="n"><a href="#t69">69</a></span><span class="t"><span class="str"> may not be appropriate for the population under study so it's best to provide as much data as you can for the specific population.</span> </span><span class="r"></span></p>
<p id="t70" class="pln"><span class="n"><a href="#t70">70</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t71" class="pln"><span class="n"><a href="#t71">71</a></span><span class="t"><span class="str"> Args:</span> </span><span class="r"></span></p>
<p id="t72" class="pln"><span class="n"><a href="#t72">72</a></span><span class="t"><span class="str"> datadir (string) : file path to the data directory</span> </span><span class="r"></span></p>
<p id="t73" class="pln"><span class="n"><a href="#t73">73</a></span><span class="t"><span class="str"> location (string) : name of the location</span> </span><span class="r"></span></p>
<p id="t74" class="pln"><span class="n"><a href="#t74">74</a></span><span class="t"><span class="str"> state_location (string) : name of the state the location is in</span> </span><span class="r"></span></p>
<p id="t75" class="pln"><span class="n"><a href="#t75">75</a></span><span class="t"><span class="str"> country_location (string) : name of the country the location is in</span> </span><span class="r"></span></p>
<p id="t76" class="pln"><span class="n"><a href="#t76">76</a></span><span class="t"><span class="str"> file_path (string) : file path to user specified gender by age bracket distribution data</span> </span><span class="r"></span></p>
<p id="t77" class="pln"><span class="n"><a href="#t77">77</a></span><span class="t"><span class="str"> use_default (bool) : if True, try to first use the other parameters to find data specific to the location under study, otherwise returns default data drawing from Seattle, Washington.</span> </span><span class="r"></span></p>
<p id="t78" class="pln"><span class="n"><a href="#t78">78</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t79" class="pln"><span class="n"><a href="#t79">79</a></span><span class="t"><span class="str"> Returns:</span> </span><span class="r"></span></p>
<p id="t80" class="pln"><span class="n"><a href="#t80">80</a></span><span class="t"><span class="str"> A dictionary of the fractions for two genders by age bracket.</span> </span><span class="r"></span></p>
<p id="t81" class="pln"><span class="n"><a href="#t81">81</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t82" class="pln"><span class="n"><a href="#t82">82</a></span><span class="t"><span class="str"> """</span> </span><span class="r"></span></p>
<p id="t83" class="run"><span class="n"><a href="#t83">83</a></span><span class="t"> <span class="key">if</span> <span class="nam">file_path</span> <span class="key">is</span> <span class="key">None</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t84" class="run"><span class="n"><a href="#t84">84</a></span><span class="t"> <span class="nam">file_path</span> <span class="op">=</span> <span class="nam">get_gender_fraction_by_age_path</span><span class="op">(</span><span class="nam">datadir</span><span class="op">,</span> <span class="nam">location</span><span class="op">,</span> <span class="nam">state_location</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t85" class="run"><span class="n"><a href="#t85">85</a></span><span class="t"> <span class="key">try</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t86" class="run"><span class="n"><a href="#t86">86</a></span><span class="t"> <span class="nam">df</span> <span class="op">=</span> <span class="nam">pd</span><span class="op">.</span><span class="nam">read_csv</span><span class="op">(</span><span class="nam">file_path</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t87" class="mis show_mis"><span class="n"><a href="#t87">87</a></span><span class="t"> <span class="key">except</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t88" class="mis show_mis"><span class="n"><a href="#t88">88</a></span><span class="t"> <span class="key">if</span> <span class="nam">use_default</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t89" class="mis show_mis"><span class="n"><a href="#t89">89</a></span><span class="t"> <span class="nam">file_path</span> <span class="op">=</span> <span class="nam">get_gender_fraction_by_age_path</span><span class="op">(</span><span class="nam">datadir</span><span class="op">,</span> <span class="nam">location</span><span class="op">=</span><span class="str">'seattle_metro'</span><span class="op">,</span> <span class="nam">state_location</span><span class="op">=</span><span class="str">'Washington'</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">=</span><span class="str">'usa'</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t90" class="mis show_mis"><span class="n"><a href="#t90">90</a></span><span class="t"> <span class="nam">df</span> <span class="op">=</span> <span class="nam">pd</span><span class="op">.</span><span class="nam">read_csv</span><span class="op">(</span><span class="nam">file_path</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t91" class="pln"><span class="n"><a href="#t91">91</a></span><span class="t"> <span class="key">else</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t92" class="mis show_mis"><span class="n"><a href="#t92">92</a></span><span class="t"> <span class="key">raise</span> <span class="nam">NotImplementedError</span><span class="op">(</span><span class="str">"Data unavailable for the location specified. Please check input strings or set use_default to True to use default values from Seattle, Washington."</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t93" class="run"><span class="n"><a href="#t93">93</a></span><span class="t"> <span class="nam">dic</span> <span class="op">=</span> <span class="op">{</span><span class="op">}</span> </span><span class="r"></span></p>
<p id="t94" class="run"><span class="n"><a href="#t94">94</a></span><span class="t"> <span class="nam">dic</span><span class="op">[</span><span class="str">'male'</span><span class="op">]</span> <span class="op">=</span> <span class="nam">dict</span><span class="op">(</span><span class="nam">zip</span><span class="op">(</span><span class="nam">np</span><span class="op">.</span><span class="nam">arange</span><span class="op">(</span><span class="nam">len</span><span class="op">(</span><span class="nam">df</span><span class="op">)</span><span class="op">)</span><span class="op">,</span> <span class="nam">df</span><span class="op">.</span><span class="nam">fraction_male</span><span class="op">)</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t95" class="run"><span class="n"><a href="#t95">95</a></span><span class="t"> <span class="nam">dic</span><span class="op">[</span><span class="str">'female'</span><span class="op">]</span> <span class="op">=</span> <span class="nam">dict</span><span class="op">(</span><span class="nam">zip</span><span class="op">(</span><span class="nam">np</span><span class="op">.</span><span class="nam">arange</span><span class="op">(</span><span class="nam">len</span><span class="op">(</span><span class="nam">df</span><span class="op">)</span><span class="op">)</span><span class="op">,</span> <span class="nam">df</span><span class="op">.</span><span class="nam">fraction_female</span><span class="op">)</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t96" class="run"><span class="n"><a href="#t96">96</a></span><span class="t"> <span class="key">return</span> <span class="nam">dic</span> </span><span class="r"></span></p>
<p id="t97" class="pln"><span class="n"><a href="#t97">97</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t98" class="pln"><span class="n"><a href="#t98">98</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t99" class="run"><span class="n"><a href="#t99">99</a></span><span class="t"><span class="key">def</span> <span class="nam">get_age_bracket_distr_path</span><span class="op">(</span><span class="nam">datadir</span><span class="op">,</span> <span class="nam">location</span><span class="op">=</span><span class="key">None</span><span class="op">,</span> <span class="nam">state_location</span><span class="op">=</span><span class="key">None</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">=</span><span class="key">None</span><span class="op">)</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t100" class="pln"><span class="n"><a href="#t100">100</a></span><span class="t"> <span class="str">"""</span> </span><span class="r"></span></p>
<p id="t101" class="pln"><span class="n"><a href="#t101">101</a></span><span class="t"><span class="str"> Get file_path for age distribution by age brackets.</span> </span><span class="r"></span></p>
<p id="t102" class="pln"><span class="n"><a href="#t102">102</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t103" class="pln"><span class="n"><a href="#t103">103</a></span><span class="t"><span class="str"> Args:</span> </span><span class="r"></span></p>
<p id="t104" class="pln"><span class="n"><a href="#t104">104</a></span><span class="t"><span class="str"> datadir (string) : file path to the data directory</span> </span><span class="r"></span></p>
<p id="t105" class="pln"><span class="n"><a href="#t105">105</a></span><span class="t"><span class="str"> location (string) : name of the location</span> </span><span class="r"></span></p>
<p id="t106" class="pln"><span class="n"><a href="#t106">106</a></span><span class="t"><span class="str"> state_location (string) : name of the state the location is in</span> </span><span class="r"></span></p>
<p id="t107" class="pln"><span class="n"><a href="#t107">107</a></span><span class="t"><span class="str"> country_location (string) : name of the country the location is in</span> </span><span class="r"></span></p>
<p id="t108" class="pln"><span class="n"><a href="#t108">108</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t109" class="pln"><span class="n"><a href="#t109">109</a></span><span class="t"><span class="str"> Returns:</span> </span><span class="r"></span></p>
<p id="t110" class="pln"><span class="n"><a href="#t110">110</a></span><span class="t"><span class="str"> A file path to the age distribution by age bracket data.</span> </span><span class="r"></span></p>
<p id="t111" class="pln"><span class="n"><a href="#t111">111</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t112" class="pln"><span class="n"><a href="#t112">112</a></span><span class="t"><span class="str"> """</span> </span><span class="r"></span></p>
<p id="t113" class="run"><span class="n"><a href="#t113">113</a></span><span class="t"> <span class="nam">levels</span> <span class="op">=</span> <span class="op">[</span><span class="nam">location</span><span class="op">,</span> <span class="nam">state_location</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">]</span> </span><span class="r"></span></p>
<p id="t114" class="run"><span class="n"><a href="#t114">114</a></span><span class="t"> <span class="key">if</span> <span class="nam">all</span><span class="op">(</span><span class="nam">level</span> <span class="key">is</span> <span class="key">None</span> <span class="key">for</span> <span class="nam">level</span> <span class="key">in</span> <span class="nam">levels</span><span class="op">)</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t115" class="mis show_mis"><span class="n"><a href="#t115">115</a></span><span class="t"> <span class="key">raise</span> <span class="nam">NotImplementedError</span><span class="op">(</span><span class="str">"Missing inputs. Please check that you have supplied the correct location and state_location strings."</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t116" class="run"><span class="n"><a href="#t116">116</a></span><span class="t"> <span class="key">elif</span> <span class="nam">country_location</span> <span class="key">is</span> <span class="key">None</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t117" class="mis show_mis"><span class="n"><a href="#t117">117</a></span><span class="t"> <span class="key">raise</span> <span class="nam">NotImplementedError</span><span class="op">(</span><span class="str">"Missing country_location string. Please check that you have supplied this string."</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t118" class="run"><span class="n"><a href="#t118">118</a></span><span class="t"> <span class="key">elif</span> <span class="nam">state_location</span> <span class="key">is</span> <span class="key">None</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t119" class="mis show_mis"><span class="n"><a href="#t119">119</a></span><span class="t"> <span class="key">return</span> <span class="nam">os</span><span class="op">.</span><span class="nam">path</span><span class="op">.</span><span class="nam">join</span><span class="op">(</span><span class="nam">datadir</span><span class="op">,</span> <span class="str">'demographics'</span><span class="op">,</span> <span class="str">'contact_matrices_152_countries'</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">,</span> <span class="str">'age_distributions'</span><span class="op">,</span> <span class="nam">country_location</span> <span class="op">+</span> <span class="str">f'_age_bracket_distr_{cfg.nbrackets}.dat'</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t120" class="run"><span class="n"><a href="#t120">120</a></span><span class="t"> <span class="key">elif</span> <span class="nam">location</span> <span class="key">is</span> <span class="key">None</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t121" class="mis show_mis"><span class="n"><a href="#t121">121</a></span><span class="t"> <span class="key">return</span> <span class="nam">os</span><span class="op">.</span><span class="nam">path</span><span class="op">.</span><span class="nam">join</span><span class="op">(</span><span class="nam">datadir</span><span class="op">,</span> <span class="str">'demographics'</span><span class="op">,</span> <span class="str">'contact_matrices_152_countries'</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">,</span> <span class="nam">state_location</span><span class="op">,</span> <span class="str">'age_distributions'</span><span class="op">,</span> <span class="nam">state_location</span> <span class="op">+</span> <span class="str">f'_age_bracket_distr_{cfg.nbrackets}.dat'</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t122" class="pln"><span class="n"><a href="#t122">122</a></span><span class="t"> <span class="key">else</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t123" class="run"><span class="n"><a href="#t123">123</a></span><span class="t"> <span class="key">return</span> <span class="nam">os</span><span class="op">.</span><span class="nam">path</span><span class="op">.</span><span class="nam">join</span><span class="op">(</span><span class="nam">datadir</span><span class="op">,</span> <span class="str">'demographics'</span><span class="op">,</span> <span class="str">'contact_matrices_152_countries'</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">,</span> <span class="nam">state_location</span><span class="op">,</span> <span class="str">'age_distributions'</span><span class="op">,</span> <span class="nam">location</span> <span class="op">+</span> <span class="str">f'_age_bracket_distr_{cfg.nbrackets}.dat'</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t124" class="pln"><span class="n"><a href="#t124">124</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t125" class="pln"><span class="n"><a href="#t125">125</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t126" class="run"><span class="n"><a href="#t126">126</a></span><span class="t"><span class="key">def</span> <span class="nam">read_age_bracket_distr</span><span class="op">(</span><span class="nam">datadir</span><span class="op">,</span> <span class="nam">location</span><span class="op">=</span><span class="key">None</span><span class="op">,</span> <span class="nam">state_location</span><span class="op">=</span><span class="key">None</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">=</span><span class="key">None</span><span class="op">,</span> <span class="nam">file_path</span><span class="op">=</span><span class="key">None</span><span class="op">,</span> <span class="nam">use_default</span><span class="op">=</span><span class="key">False</span><span class="op">)</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t127" class="pln"><span class="n"><a href="#t127">127</a></span><span class="t"> <span class="str">"""</span> </span><span class="r"></span></p>
<p id="t128" class="pln"><span class="n"><a href="#t128">128</a></span><span class="t"><span class="str"> A dict of age distribution by age brackets. If use_default, then we'll first try to look for location specific data and if that's not available we'll use default data from Seattle, WA. This</span> </span><span class="r"></span></p>
<p id="t129" class="pln"><span class="n"><a href="#t129">129</a></span><span class="t"><span class="str"> may not be appropriate for the population under study so it's best to provide as much data as you can for the specific population.</span> </span><span class="r"></span></p>
<p id="t130" class="pln"><span class="n"><a href="#t130">130</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t131" class="pln"><span class="n"><a href="#t131">131</a></span><span class="t"><span class="str"> Args:</span> </span><span class="r"></span></p>
<p id="t132" class="pln"><span class="n"><a href="#t132">132</a></span><span class="t"><span class="str"> datadir (string) : file path to the data directory</span> </span><span class="r"></span></p>
<p id="t133" class="pln"><span class="n"><a href="#t133">133</a></span><span class="t"><span class="str"> location (string) : name of the location</span> </span><span class="r"></span></p>
<p id="t134" class="pln"><span class="n"><a href="#t134">134</a></span><span class="t"><span class="str"> state_location (string) : name of the state the location is in</span> </span><span class="r"></span></p>
<p id="t135" class="pln"><span class="n"><a href="#t135">135</a></span><span class="t"><span class="str"> country_location (string) : name of the country the location is in</span> </span><span class="r"></span></p>
<p id="t136" class="pln"><span class="n"><a href="#t136">136</a></span><span class="t"><span class="str"> file_path (string) : file path to user specified gender by age bracket distribution data</span> </span><span class="r"></span></p>
<p id="t137" class="pln"><span class="n"><a href="#t137">137</a></span><span class="t"><span class="str"> use_default (bool) : if True, try to first use the other parameters to find data specific to the location under study, otherwise returns default data drawing from Seattle, Washington.</span> </span><span class="r"></span></p>
<p id="t138" class="pln"><span class="n"><a href="#t138">138</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t139" class="pln"><span class="n"><a href="#t139">139</a></span><span class="t"><span class="str"> Returns:</span> </span><span class="r"></span></p>
<p id="t140" class="pln"><span class="n"><a href="#t140">140</a></span><span class="t"><span class="str"> A dictionary of the age distribution by age bracket. Keys map to a range of ages in that age bracket.</span> </span><span class="r"></span></p>
<p id="t141" class="pln"><span class="n"><a href="#t141">141</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t142" class="pln"><span class="n"><a href="#t142">142</a></span><span class="t"><span class="str"> """</span> </span><span class="r"></span></p>
<p id="t143" class="run"><span class="n"><a href="#t143">143</a></span><span class="t"> <span class="key">if</span> <span class="nam">file_path</span> <span class="key">is</span> <span class="key">None</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t144" class="run"><span class="n"><a href="#t144">144</a></span><span class="t"> <span class="nam">file_path</span> <span class="op">=</span> <span class="nam">get_age_bracket_distr_path</span><span class="op">(</span><span class="nam">datadir</span><span class="op">,</span> <span class="nam">location</span><span class="op">,</span> <span class="nam">state_location</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t145" class="run"><span class="n"><a href="#t145">145</a></span><span class="t"> <span class="key">try</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t146" class="run"><span class="n"><a href="#t146">146</a></span><span class="t"> <span class="nam">df</span> <span class="op">=</span> <span class="nam">pd</span><span class="op">.</span><span class="nam">read_csv</span><span class="op">(</span><span class="nam">file_path</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t147" class="mis show_mis"><span class="n"><a href="#t147">147</a></span><span class="t"> <span class="key">except</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t148" class="mis show_mis"><span class="n"><a href="#t148">148</a></span><span class="t"> <span class="key">if</span> <span class="nam">use_default</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t149" class="mis show_mis"><span class="n"><a href="#t149">149</a></span><span class="t"> <span class="nam">file_path</span> <span class="op">=</span> <span class="nam">get_age_bracket_distr_path</span><span class="op">(</span><span class="nam">datadir</span><span class="op">,</span> <span class="nam">location</span><span class="op">=</span><span class="str">'seattle_metro'</span><span class="op">,</span> <span class="nam">state_location</span><span class="op">=</span><span class="str">'Washington'</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">=</span><span class="str">'usa'</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t150" class="mis show_mis"><span class="n"><a href="#t150">150</a></span><span class="t"> <span class="nam">df</span> <span class="op">=</span> <span class="nam">pd</span><span class="op">.</span><span class="nam">read_csv</span><span class="op">(</span><span class="nam">file_path</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t151" class="pln"><span class="n"><a href="#t151">151</a></span><span class="t"> <span class="key">else</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t152" class="mis show_mis"><span class="n"><a href="#t152">152</a></span><span class="t"> <span class="key">raise</span> <span class="nam">NotImplementedError</span><span class="op">(</span><span class="str">"Data unavailable for the location specified. Please check input strings or set use_default to True to use default values from Seattle, Washington."</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t153" class="run"><span class="n"><a href="#t153">153</a></span><span class="t"> <span class="key">return</span> <span class="nam">dict</span><span class="op">(</span><span class="nam">zip</span><span class="op">(</span><span class="nam">np</span><span class="op">.</span><span class="nam">arange</span><span class="op">(</span><span class="nam">len</span><span class="op">(</span><span class="nam">df</span><span class="op">)</span><span class="op">)</span><span class="op">,</span> <span class="nam">df</span><span class="op">.</span><span class="nam">percent</span><span class="op">)</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t154" class="pln"><span class="n"><a href="#t154">154</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t155" class="pln"><span class="n"><a href="#t155">155</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t156" class="run"><span class="n"><a href="#t156">156</a></span><span class="t"><span class="key">def</span> <span class="nam">get_household_size_distr_path</span><span class="op">(</span><span class="nam">datadir</span><span class="op">,</span> <span class="nam">location</span><span class="op">=</span><span class="key">None</span><span class="op">,</span> <span class="nam">state_location</span><span class="op">=</span><span class="key">None</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">=</span><span class="key">None</span><span class="op">)</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t157" class="pln"><span class="n"><a href="#t157">157</a></span><span class="t"> <span class="str">"""</span> </span><span class="r"></span></p>
<p id="t158" class="pln"><span class="n"><a href="#t158">158</a></span><span class="t"><span class="str"> Get file_path for household size distribution.</span> </span><span class="r"></span></p>
<p id="t159" class="pln"><span class="n"><a href="#t159">159</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t160" class="pln"><span class="n"><a href="#t160">160</a></span><span class="t"><span class="str"> Args:</span> </span><span class="r"></span></p>
<p id="t161" class="pln"><span class="n"><a href="#t161">161</a></span><span class="t"><span class="str"> datadir (string) : file path to the data directory</span> </span><span class="r"></span></p>
<p id="t162" class="pln"><span class="n"><a href="#t162">162</a></span><span class="t"><span class="str"> location (string) : name of the location</span> </span><span class="r"></span></p>
<p id="t163" class="pln"><span class="n"><a href="#t163">163</a></span><span class="t"><span class="str"> state_location (string) : name of the state the location is in</span> </span><span class="r"></span></p>
<p id="t164" class="pln"><span class="n"><a href="#t164">164</a></span><span class="t"><span class="str"> country_location (string) : name of the country the location is in</span> </span><span class="r"></span></p>
<p id="t165" class="pln"><span class="n"><a href="#t165">165</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t166" class="pln"><span class="n"><a href="#t166">166</a></span><span class="t"><span class="str"> Returns:</span> </span><span class="r"></span></p>
<p id="t167" class="pln"><span class="n"><a href="#t167">167</a></span><span class="t"><span class="str"> A file path to the household size distribution data.</span> </span><span class="r"></span></p>
<p id="t168" class="pln"><span class="n"><a href="#t168">168</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t169" class="pln"><span class="n"><a href="#t169">169</a></span><span class="t"><span class="str"> """</span> </span><span class="r"></span></p>
<p id="t170" class="run"><span class="n"><a href="#t170">170</a></span><span class="t"> <span class="nam">levels</span> <span class="op">=</span> <span class="op">[</span><span class="nam">location</span><span class="op">,</span> <span class="nam">state_location</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">]</span> </span><span class="r"></span></p>
<p id="t171" class="run"><span class="n"><a href="#t171">171</a></span><span class="t"> <span class="key">if</span> <span class="nam">all</span><span class="op">(</span><span class="nam">level</span> <span class="key">is</span> <span class="key">None</span> <span class="key">for</span> <span class="nam">level</span> <span class="key">in</span> <span class="nam">levels</span><span class="op">)</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t172" class="mis show_mis"><span class="n"><a href="#t172">172</a></span><span class="t"> <span class="key">raise</span> <span class="nam">NotImplementedError</span><span class="op">(</span><span class="str">"Missing inputs. Please check that you have supplied the correct location and state_location strings."</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t173" class="run"><span class="n"><a href="#t173">173</a></span><span class="t"> <span class="key">elif</span> <span class="nam">country_location</span> <span class="key">is</span> <span class="key">None</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t174" class="mis show_mis"><span class="n"><a href="#t174">174</a></span><span class="t"> <span class="key">raise</span> <span class="nam">NotImplementedError</span><span class="op">(</span><span class="str">"Mssing country_location string. Please check that you have supplied this string."</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t175" class="run"><span class="n"><a href="#t175">175</a></span><span class="t"> <span class="key">elif</span> <span class="nam">state_location</span> <span class="key">is</span> <span class="key">None</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t176" class="mis show_mis"><span class="n"><a href="#t176">176</a></span><span class="t"> <span class="key">return</span> <span class="nam">os</span><span class="op">.</span><span class="nam">path</span><span class="op">.</span><span class="nam">join</span><span class="op">(</span><span class="nam">datadir</span><span class="op">,</span> <span class="str">'demographics'</span><span class="op">,</span> <span class="str">'contact_matrices_152_countries'</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">,</span> <span class="str">'household size distributions'</span><span class="op">,</span> <span class="nam">country_location</span> <span class="op">+</span> <span class="str">'_household_size_distr.dat'</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t177" class="run"><span class="n"><a href="#t177">177</a></span><span class="t"> <span class="key">elif</span> <span class="nam">location</span> <span class="key">is</span> <span class="key">None</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t178" class="mis show_mis"><span class="n"><a href="#t178">178</a></span><span class="t"> <span class="key">return</span> <span class="nam">os</span><span class="op">.</span><span class="nam">path</span><span class="op">.</span><span class="nam">join</span><span class="op">(</span><span class="nam">datadir</span><span class="op">,</span> <span class="str">'demographics'</span><span class="op">,</span> <span class="str">'contact_matrices_152_countries'</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">,</span> <span class="nam">state_location</span><span class="op">,</span> <span class="str">'household size distributions'</span><span class="op">,</span> <span class="nam">state_location</span> <span class="op">+</span> <span class="str">'_household_size_distr.dat'</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t179" class="pln"><span class="n"><a href="#t179">179</a></span><span class="t"> <span class="key">else</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t180" class="run"><span class="n"><a href="#t180">180</a></span><span class="t"> <span class="key">return</span> <span class="nam">os</span><span class="op">.</span><span class="nam">path</span><span class="op">.</span><span class="nam">join</span><span class="op">(</span><span class="nam">datadir</span><span class="op">,</span> <span class="str">'demographics'</span><span class="op">,</span> <span class="str">'contact_matrices_152_countries'</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">,</span> <span class="nam">state_location</span><span class="op">,</span> <span class="str">'household size distributions'</span><span class="op">,</span> <span class="nam">location</span> <span class="op">+</span> <span class="str">'_household_size_distr.dat'</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t181" class="pln"><span class="n"><a href="#t181">181</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t182" class="pln"><span class="n"><a href="#t182">182</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t183" class="run"><span class="n"><a href="#t183">183</a></span><span class="t"><span class="key">def</span> <span class="nam">get_household_size_distr</span><span class="op">(</span><span class="nam">datadir</span><span class="op">,</span> <span class="nam">location</span><span class="op">=</span><span class="key">None</span><span class="op">,</span> <span class="nam">state_location</span><span class="op">=</span><span class="key">None</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">=</span><span class="key">None</span><span class="op">,</span> <span class="nam">file_path</span><span class="op">=</span><span class="key">None</span><span class="op">,</span> <span class="nam">use_default</span><span class="op">=</span><span class="key">False</span><span class="op">)</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t184" class="pln"><span class="n"><a href="#t184">184</a></span><span class="t"> <span class="str">"""</span> </span><span class="r"></span></p>
<p id="t185" class="pln"><span class="n"><a href="#t185">185</a></span><span class="t"><span class="str"> A dictionary of the distributions of household sizes. If you don't give the file_path, then supply the location and state_location strings.</span> </span><span class="r"></span></p>
<p id="t186" class="pln"><span class="n"><a href="#t186">186</a></span><span class="t"><span class="str"> If use_default, then we'll first try to look for location specific data and if that's not available we'll use default data from Seattle, WA. This</span> </span><span class="r"></span></p>
<p id="t187" class="pln"><span class="n"><a href="#t187">187</a></span><span class="t"><span class="str"> may not be appropriate for the population under study so it's best to provide as much data as you can for the specific population.</span> </span><span class="r"></span></p>
<p id="t188" class="pln"><span class="n"><a href="#t188">188</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t189" class="pln"><span class="n"><a href="#t189">189</a></span><span class="t"><span class="str"> Args:</span> </span><span class="r"></span></p>
<p id="t190" class="pln"><span class="n"><a href="#t190">190</a></span><span class="t"><span class="str"> datadir (string) : file path to the data directory</span> </span><span class="r"></span></p>
<p id="t191" class="pln"><span class="n"><a href="#t191">191</a></span><span class="t"><span class="str"> location (string) : name of the location</span> </span><span class="r"></span></p>
<p id="t192" class="pln"><span class="n"><a href="#t192">192</a></span><span class="t"><span class="str"> state_location (string) : name of the state the location is in</span> </span><span class="r"></span></p>
<p id="t193" class="pln"><span class="n"><a href="#t193">193</a></span><span class="t"><span class="str"> country_location (string) : name of the country the location is in</span> </span><span class="r"></span></p>
<p id="t194" class="pln"><span class="n"><a href="#t194">194</a></span><span class="t"><span class="str"> file_path (string) : file path to user specified gender by age bracket distribution data</span> </span><span class="r"></span></p>
<p id="t195" class="pln"><span class="n"><a href="#t195">195</a></span><span class="t"><span class="str"> use_default (bool) : if True, try to first use the other parameters to find data specific to the location under study, otherwise returns default data drawing from Seattle, Washington.</span> </span><span class="r"></span></p>
<p id="t196" class="pln"><span class="n"><a href="#t196">196</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t197" class="pln"><span class="n"><a href="#t197">197</a></span><span class="t"><span class="str"> Returns:</span> </span><span class="r"></span></p>
<p id="t198" class="pln"><span class="n"><a href="#t198">198</a></span><span class="t"><span class="str"> A dictionary of the household size distribution data. Keys map to the household size as an integer, values are the percent of households of that size.</span> </span><span class="r"></span></p>
<p id="t199" class="pln"><span class="n"><a href="#t199">199</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t200" class="pln"><span class="n"><a href="#t200">200</a></span><span class="t"><span class="str"> """</span> </span><span class="r"></span></p>
<p id="t201" class="run"><span class="n"><a href="#t201">201</a></span><span class="t"> <span class="key">if</span> <span class="nam">file_path</span> <span class="key">is</span> <span class="key">None</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t202" class="run"><span class="n"><a href="#t202">202</a></span><span class="t"> <span class="nam">file_path</span> <span class="op">=</span> <span class="nam">get_household_size_distr_path</span><span class="op">(</span><span class="nam">datadir</span><span class="op">,</span> <span class="nam">location</span><span class="op">,</span> <span class="nam">state_location</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t203" class="run"><span class="n"><a href="#t203">203</a></span><span class="t"> <span class="key">try</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t204" class="run"><span class="n"><a href="#t204">204</a></span><span class="t"> <span class="nam">df</span> <span class="op">=</span> <span class="nam">pd</span><span class="op">.</span><span class="nam">read_csv</span><span class="op">(</span><span class="nam">file_path</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t205" class="mis show_mis"><span class="n"><a href="#t205">205</a></span><span class="t"> <span class="key">except</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t206" class="mis show_mis"><span class="n"><a href="#t206">206</a></span><span class="t"> <span class="key">if</span> <span class="nam">use_default</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t207" class="mis show_mis"><span class="n"><a href="#t207">207</a></span><span class="t"> <span class="nam">file_path</span> <span class="op">=</span> <span class="nam">get_household_size_distr_path</span><span class="op">(</span><span class="nam">datadir</span><span class="op">,</span> <span class="nam">location</span><span class="op">=</span><span class="str">'seattle_metro'</span><span class="op">,</span> <span class="nam">state_location</span><span class="op">=</span><span class="str">'Washington'</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">=</span><span class="str">'usa'</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t208" class="mis show_mis"><span class="n"><a href="#t208">208</a></span><span class="t"> <span class="nam">df</span> <span class="op">=</span> <span class="nam">pd</span><span class="op">.</span><span class="nam">read_csv</span><span class="op">(</span><span class="nam">file_path</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t209" class="pln"><span class="n"><a href="#t209">209</a></span><span class="t"> <span class="key">else</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t210" class="mis show_mis"><span class="n"><a href="#t210">210</a></span><span class="t"> <span class="key">raise</span> <span class="nam">NotImplementedError</span><span class="op">(</span><span class="str">"Data unavailable for the location specified. Please check input strings or set use_default to True to use default values from Seattle, Washington."</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t211" class="run"><span class="n"><a href="#t211">211</a></span><span class="t"> <span class="key">return</span> <span class="nam">dict</span><span class="op">(</span><span class="nam">zip</span><span class="op">(</span><span class="nam">df</span><span class="op">.</span><span class="nam">household_size</span><span class="op">,</span> <span class="nam">df</span><span class="op">.</span><span class="nam">percent</span><span class="op">)</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t212" class="pln"><span class="n"><a href="#t212">212</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t213" class="pln"><span class="n"><a href="#t213">213</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t214" class="run"><span class="n"><a href="#t214">214</a></span><span class="t"><span class="key">def</span> <span class="nam">get_head_age_brackets_path</span><span class="op">(</span><span class="nam">datadir</span><span class="op">,</span> <span class="nam">state_location</span><span class="op">=</span><span class="key">None</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">=</span><span class="key">None</span><span class="op">)</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t215" class="pln"><span class="n"><a href="#t215">215</a></span><span class="t"> <span class="str">"""</span> </span><span class="r"></span></p>
<p id="t216" class="pln"><span class="n"><a href="#t216">216</a></span><span class="t"><span class="str"> Get file_path for head of household age brackets. If data doesn't exist at the state level, only give the country_location.</span> </span><span class="r"></span></p>
<p id="t217" class="pln"><span class="n"><a href="#t217">217</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t218" class="pln"><span class="n"><a href="#t218">218</a></span><span class="t"><span class="str"> Args:</span> </span><span class="r"></span></p>
<p id="t219" class="pln"><span class="n"><a href="#t219">219</a></span><span class="t"><span class="str"> datadir (string) : file path to the data directory</span> </span><span class="r"></span></p>
<p id="t220" class="pln"><span class="n"><a href="#t220">220</a></span><span class="t"><span class="str"> state_location (string) : name of the state</span> </span><span class="r"></span></p>
<p id="t221" class="pln"><span class="n"><a href="#t221">221</a></span><span class="t"><span class="str"> country_location (string) : name of the country the state_location is in</span> </span><span class="r"></span></p>
<p id="t222" class="pln"><span class="n"><a href="#t222">222</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t223" class="pln"><span class="n"><a href="#t223">223</a></span><span class="t"><span class="str"> Returns:</span> </span><span class="r"></span></p>
<p id="t224" class="pln"><span class="n"><a href="#t224">224</a></span><span class="t"><span class="str"> A file path to the age brackets for head of household distribution data.</span> </span><span class="r"></span></p>
<p id="t225" class="pln"><span class="n"><a href="#t225">225</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t226" class="pln"><span class="n"><a href="#t226">226</a></span><span class="t"><span class="str"> """</span> </span><span class="r"></span></p>
<p id="t227" class="run"><span class="n"><a href="#t227">227</a></span><span class="t"> <span class="nam">levels</span> <span class="op">=</span> <span class="op">[</span><span class="nam">state_location</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">]</span> </span><span class="r"></span></p>
<p id="t228" class="run"><span class="n"><a href="#t228">228</a></span><span class="t"> <span class="key">if</span> <span class="nam">all</span><span class="op">(</span><span class="nam">level</span> <span class="key">is</span> <span class="key">None</span> <span class="key">for</span> <span class="nam">level</span> <span class="key">in</span> <span class="nam">levels</span><span class="op">)</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t229" class="mis show_mis"><span class="n"><a href="#t229">229</a></span><span class="t"> <span class="key">raise</span> <span class="nam">NotImplementedError</span><span class="op">(</span><span class="str">"Missing input strings. Try again."</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t230" class="run"><span class="n"><a href="#t230">230</a></span><span class="t"> <span class="key">elif</span> <span class="nam">country_location</span> <span class="key">is</span> <span class="key">None</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t231" class="mis show_mis"><span class="n"><a href="#t231">231</a></span><span class="t"> <span class="key">raise</span> <span class="nam">NotImplementedError</span><span class="op">(</span><span class="str">"Missing country_location string. Please check that you have supplied this string."</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t232" class="run"><span class="n"><a href="#t232">232</a></span><span class="t"> <span class="key">elif</span> <span class="nam">state_location</span> <span class="key">is</span> <span class="key">None</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t233" class="run"><span class="n"><a href="#t233">233</a></span><span class="t"> <span class="key">return</span> <span class="nam">os</span><span class="op">.</span><span class="nam">path</span><span class="op">.</span><span class="nam">join</span><span class="op">(</span><span class="nam">datadir</span><span class="op">,</span> <span class="str">'demographics'</span><span class="op">,</span> <span class="str">'contact_matrices_152_countries'</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">,</span> <span class="str">'household living arrangements'</span><span class="op">,</span> <span class="str">'head_age_brackets.dat'</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t234" class="pln"><span class="n"><a href="#t234">234</a></span><span class="t"> <span class="key">else</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t235" class="run"><span class="n"><a href="#t235">235</a></span><span class="t"> <span class="key">return</span> <span class="nam">os</span><span class="op">.</span><span class="nam">path</span><span class="op">.</span><span class="nam">join</span><span class="op">(</span><span class="nam">datadir</span><span class="op">,</span> <span class="str">'demographics'</span><span class="op">,</span> <span class="str">'contact_matrices_152_countries'</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">,</span> <span class="nam">state_location</span><span class="op">,</span> <span class="str">'household living arrangements'</span><span class="op">,</span> <span class="str">'head_age_brackets.dat'</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t236" class="pln"><span class="n"><a href="#t236">236</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t237" class="pln"><span class="n"><a href="#t237">237</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t238" class="run"><span class="n"><a href="#t238">238</a></span><span class="t"><span class="key">def</span> <span class="nam">get_head_age_brackets</span><span class="op">(</span><span class="nam">datadir</span><span class="op">,</span> <span class="nam">state_location</span><span class="op">=</span><span class="key">None</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">=</span><span class="key">None</span><span class="op">,</span> <span class="nam">file_path</span><span class="op">=</span><span class="key">None</span><span class="op">,</span> <span class="nam">use_default</span><span class="op">=</span><span class="key">False</span><span class="op">)</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t239" class="pln"><span class="n"><a href="#t239">239</a></span><span class="t"> <span class="str">"""</span> </span><span class="r"></span></p>
<p id="t240" class="pln"><span class="n"><a href="#t240">240</a></span><span class="t"><span class="str"> Get a dictionary of head age brackets either from the file_path directly, or using the other parameters to figure out what the file_path should be.</span> </span><span class="r"></span></p>
<p id="t241" class="pln"><span class="n"><a href="#t241">241</a></span><span class="t"><span class="str"> If use_default, then we'll first try to look for location specific data and if that's not available we'll use default data from Seattle, WA. This</span> </span><span class="r"></span></p>
<p id="t242" class="pln"><span class="n"><a href="#t242">242</a></span><span class="t"><span class="str"> may not be appropriate for the population under study so it's best to provide as much data as you can for the specific population.</span> </span><span class="r"></span></p>
<p id="t243" class="pln"><span class="n"><a href="#t243">243</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t244" class="pln"><span class="n"><a href="#t244">244</a></span><span class="t"><span class="str"> Args:</span> </span><span class="r"></span></p>
<p id="t245" class="pln"><span class="n"><a href="#t245">245</a></span><span class="t"><span class="str"> datadir (string) : file path to the data directory</span> </span><span class="r"></span></p>
<p id="t246" class="pln"><span class="n"><a href="#t246">246</a></span><span class="t"><span class="str"> state_location (string) : name of the state</span> </span><span class="r"></span></p>
<p id="t247" class="pln"><span class="n"><a href="#t247">247</a></span><span class="t"><span class="str"> country_location (string) : name of the country the state_location is in</span> </span><span class="r"></span></p>
<p id="t248" class="pln"><span class="n"><a href="#t248">248</a></span><span class="t"><span class="str"> file_path (string) : file path to user specified gender by age bracket distribution data</span> </span><span class="r"></span></p>
<p id="t249" class="pln"><span class="n"><a href="#t249">249</a></span><span class="t"><span class="str"> use_default (bool) : if True, try to first use the other parameters to find data specific to the location under study, otherwise returns default data drawing from Seattle, Washington.</span> </span><span class="r"></span></p>
<p id="t250" class="pln"><span class="n"><a href="#t250">250</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t251" class="pln"><span class="n"><a href="#t251">251</a></span><span class="t"><span class="str"> Returns:</span> </span><span class="r"></span></p>
<p id="t252" class="pln"><span class="n"><a href="#t252">252</a></span><span class="t"><span class="str"> A dictionary of the age brackets for head of household distribution data. Keys map to the age bracket as an integer, values are the percent of households which head of household in that age bracket.</span> </span><span class="r"></span></p>
<p id="t253" class="pln"><span class="n"><a href="#t253">253</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t254" class="pln"><span class="n"><a href="#t254">254</a></span><span class="t"><span class="str"> """</span> </span><span class="r"></span></p>
<p id="t255" class="run"><span class="n"><a href="#t255">255</a></span><span class="t"> <span class="key">if</span> <span class="nam">file_path</span> <span class="key">is</span> <span class="key">None</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t256" class="run"><span class="n"><a href="#t256">256</a></span><span class="t"> <span class="nam">file_path</span> <span class="op">=</span> <span class="nam">get_head_age_brackets_path</span><span class="op">(</span><span class="nam">datadir</span><span class="op">,</span> <span class="nam">state_location</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t257" class="run"><span class="n"><a href="#t257">257</a></span><span class="t"> <span class="key">try</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t258" class="run"><span class="n"><a href="#t258">258</a></span><span class="t"> <span class="nam">age_brackets</span> <span class="op">=</span> <span class="nam">get_age_brackets_from_df</span><span class="op">(</span><span class="nam">file_path</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t259" class="mis show_mis"><span class="n"><a href="#t259">259</a></span><span class="t"> <span class="key">except</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t260" class="mis show_mis"><span class="n"><a href="#t260">260</a></span><span class="t"> <span class="key">if</span> <span class="nam">use_default</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t261" class="mis show_mis"><span class="n"><a href="#t261">261</a></span><span class="t"> <span class="nam">file_path</span> <span class="op">=</span> <span class="nam">get_head_age_brackets_path</span><span class="op">(</span><span class="nam">datadir</span><span class="op">,</span> <span class="nam">state_location</span><span class="op">=</span><span class="str">'Washington'</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">=</span><span class="str">'usa'</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t262" class="mis show_mis"><span class="n"><a href="#t262">262</a></span><span class="t"> <span class="nam">age_brackets</span> <span class="op">=</span> <span class="nam">get_age_brackets_from_df</span><span class="op">(</span><span class="nam">file_path</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t263" class="pln"><span class="n"><a href="#t263">263</a></span><span class="t"> <span class="key">else</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t264" class="mis show_mis"><span class="n"><a href="#t264">264</a></span><span class="t"> <span class="key">raise</span> <span class="nam">NotImplementedError</span><span class="op">(</span><span class="str">"Data unavailable for the location specified. Please check input strings or set use_default to True to use default values from Seattle, Washington."</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t265" class="run"><span class="n"><a href="#t265">265</a></span><span class="t"> <span class="key">return</span> <span class="nam">age_brackets</span> </span><span class="r"></span></p>
<p id="t266" class="pln"><span class="n"><a href="#t266">266</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t267" class="pln"><span class="n"><a href="#t267">267</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t268" class="run"><span class="n"><a href="#t268">268</a></span><span class="t"><span class="key">def</span> <span class="nam">get_household_head_age_by_size_path</span><span class="op">(</span><span class="nam">datadir</span><span class="op">,</span> <span class="nam">state_location</span><span class="op">=</span><span class="key">None</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">=</span><span class="key">None</span><span class="op">)</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t269" class="pln"><span class="n"><a href="#t269">269</a></span><span class="t"> <span class="str">"""</span> </span><span class="r"></span></p>
<p id="t270" class="pln"><span class="n"><a href="#t270">270</a></span><span class="t"><span class="str"> Get file_path for head of household age by size counts or distribution. If the data doesn't exist at the state level, only give the country_location.</span> </span><span class="r"></span></p>
<p id="t271" class="pln"><span class="n"><a href="#t271">271</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t272" class="pln"><span class="n"><a href="#t272">272</a></span><span class="t"><span class="str"> Args:</span> </span><span class="r"></span></p>
<p id="t273" class="pln"><span class="n"><a href="#t273">273</a></span><span class="t"><span class="str"> datadir (string) : file path to the data directory</span> </span><span class="r"></span></p>
<p id="t274" class="pln"><span class="n"><a href="#t274">274</a></span><span class="t"><span class="str"> state_location (string) : name of the state</span> </span><span class="r"></span></p>
<p id="t275" class="pln"><span class="n"><a href="#t275">275</a></span><span class="t"><span class="str"> country_location (string) : name of the country the state_location is in</span> </span><span class="r"></span></p>
<p id="t276" class="pln"><span class="n"><a href="#t276">276</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t277" class="pln"><span class="n"><a href="#t277">277</a></span><span class="t"><span class="str"> Returns:</span> </span><span class="r"></span></p>
<p id="t278" class="pln"><span class="n"><a href="#t278">278</a></span><span class="t"><span class="str"> A file path to the head of household age by household size count or distribution data.</span> </span><span class="r"></span></p>
<p id="t279" class="pln"><span class="n"><a href="#t279">279</a></span><span class="t"><span class="str"> """</span> </span><span class="r"></span></p>
<p id="t280" class="run"><span class="n"><a href="#t280">280</a></span><span class="t"> <span class="nam">levels</span> <span class="op">=</span> <span class="op">[</span><span class="nam">state_location</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">]</span> </span><span class="r"></span></p>
<p id="t281" class="run"><span class="n"><a href="#t281">281</a></span><span class="t"> <span class="key">if</span> <span class="nam">all</span><span class="op">(</span><span class="nam">level</span> <span class="key">is</span> <span class="key">None</span> <span class="key">for</span> <span class="nam">level</span> <span class="key">in</span> <span class="nam">levels</span><span class="op">)</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t282" class="mis show_mis"><span class="n"><a href="#t282">282</a></span><span class="t"> <span class="key">raise</span> <span class="nam">NotImplementedError</span><span class="op">(</span><span class="str">"Missing input strings. Try again."</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t283" class="run"><span class="n"><a href="#t283">283</a></span><span class="t"> <span class="key">elif</span> <span class="nam">country_location</span> <span class="key">is</span> <span class="key">None</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t284" class="mis show_mis"><span class="n"><a href="#t284">284</a></span><span class="t"> <span class="key">raise</span> <span class="nam">NotImplementedError</span><span class="op">(</span><span class="str">"Missing country_location string. Please check that you have supplied this string."</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t285" class="run"><span class="n"><a href="#t285">285</a></span><span class="t"> <span class="key">elif</span> <span class="nam">state_location</span> <span class="key">is</span> <span class="key">None</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t286" class="run"><span class="n"><a href="#t286">286</a></span><span class="t"> <span class="key">return</span> <span class="nam">os</span><span class="op">.</span><span class="nam">path</span><span class="op">.</span><span class="nam">join</span><span class="op">(</span><span class="nam">datadir</span><span class="op">,</span> <span class="str">'demographics'</span><span class="op">,</span> <span class="str">'contact_matrices_152_countries'</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">,</span> <span class="str">'household living arrangements'</span><span class="op">,</span> <span class="str">'household_head_age_and_size_count.dat'</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t287" class="pln"><span class="n"><a href="#t287">287</a></span><span class="t"> <span class="key">else</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t288" class="run"><span class="n"><a href="#t288">288</a></span><span class="t"> <span class="key">return</span> <span class="nam">os</span><span class="op">.</span><span class="nam">path</span><span class="op">.</span><span class="nam">join</span><span class="op">(</span><span class="nam">datadir</span><span class="op">,</span> <span class="str">'demographics'</span><span class="op">,</span> <span class="str">'contact_matrices_152_countries'</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">,</span> <span class="nam">state_location</span><span class="op">,</span> <span class="str">'household living arrangements'</span><span class="op">,</span> <span class="str">'household_head_age_and_size_count.dat'</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t289" class="pln"><span class="n"><a href="#t289">289</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t290" class="pln"><span class="n"><a href="#t290">290</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t291" class="run"><span class="n"><a href="#t291">291</a></span><span class="t"><span class="key">def</span> <span class="nam">get_household_head_age_by_size_df</span><span class="op">(</span><span class="nam">datadir</span><span class="op">,</span> <span class="nam">state_location</span><span class="op">=</span><span class="key">None</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">=</span><span class="key">None</span><span class="op">,</span> <span class="nam">file_path</span><span class="op">=</span><span class="key">None</span><span class="op">,</span> <span class="nam">use_default</span><span class="op">=</span><span class="key">False</span><span class="op">)</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t292" class="pln"><span class="n"><a href="#t292">292</a></span><span class="t"> <span class="str">"""</span> </span><span class="r"></span></p>
<p id="t293" class="pln"><span class="n"><a href="#t293">293</a></span><span class="t"><span class="str"> Return a pandas df of head of household age by the size of the household. If the file_path is given return from there first.</span> </span><span class="r"></span></p>
<p id="t294" class="pln"><span class="n"><a href="#t294">294</a></span><span class="t"><span class="str"> If use_default, then we'll first try to look for location specific data and if that's not available we'll use default data from Seattle, WA. This</span> </span><span class="r"></span></p>
<p id="t295" class="pln"><span class="n"><a href="#t295">295</a></span><span class="t"><span class="str"> may not be appropriate for the population under study so it's best to provide as much data as you can for the specific population.</span> </span><span class="r"></span></p>
<p id="t296" class="pln"><span class="n"><a href="#t296">296</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t297" class="pln"><span class="n"><a href="#t297">297</a></span><span class="t"><span class="str"> Args:</span> </span><span class="r"></span></p>
<p id="t298" class="pln"><span class="n"><a href="#t298">298</a></span><span class="t"><span class="str"> datadir (string) : file path to the data directory</span> </span><span class="r"></span></p>
<p id="t299" class="pln"><span class="n"><a href="#t299">299</a></span><span class="t"><span class="str"> state_location (string) : name of the state</span> </span><span class="r"></span></p>
<p id="t300" class="pln"><span class="n"><a href="#t300">300</a></span><span class="t"><span class="str"> country_location (string) : name of the country the state_location is in</span> </span><span class="r"></span></p>
<p id="t301" class="pln"><span class="n"><a href="#t301">301</a></span><span class="t"><span class="str"> file_path (string) : file path to user specified gender by age bracket distribution data</span> </span><span class="r"></span></p>
<p id="t302" class="pln"><span class="n"><a href="#t302">302</a></span><span class="t"><span class="str"> use_default (bool) : if True, try to first use the other parameters to find data specific to the location under study, otherwise returns default data drawing from Seattle, Washington.</span> </span><span class="r"></span></p>
<p id="t303" class="pln"><span class="n"><a href="#t303">303</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t304" class="pln"><span class="n"><a href="#t304">304</a></span><span class="t"><span class="str"> Returns:</span> </span><span class="r"></span></p>
<p id="t305" class="pln"><span class="n"><a href="#t305">305</a></span><span class="t"><span class="str"> A file path to the head of household age by household size count or distribution data.</span> </span><span class="r"></span></p>
<p id="t306" class="pln"><span class="n"><a href="#t306">306</a></span><span class="t"><span class="str"> """</span> </span><span class="r"></span></p>
<p id="t307" class="run"><span class="n"><a href="#t307">307</a></span><span class="t"> <span class="key">if</span> <span class="nam">file_path</span> <span class="key">is</span> <span class="key">None</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t308" class="run"><span class="n"><a href="#t308">308</a></span><span class="t"> <span class="nam">file_path</span> <span class="op">=</span> <span class="nam">get_household_head_age_by_size_path</span><span class="op">(</span><span class="nam">datadir</span><span class="op">,</span> <span class="nam">state_location</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t309" class="run"><span class="n"><a href="#t309">309</a></span><span class="t"> <span class="key">try</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t310" class="run"><span class="n"><a href="#t310">310</a></span><span class="t"> <span class="nam">df</span> <span class="op">=</span> <span class="nam">pd</span><span class="op">.</span><span class="nam">read_csv</span><span class="op">(</span><span class="nam">file_path</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t311" class="mis show_mis"><span class="n"><a href="#t311">311</a></span><span class="t"> <span class="key">except</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t312" class="mis show_mis"><span class="n"><a href="#t312">312</a></span><span class="t"> <span class="key">if</span> <span class="nam">use_default</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t313" class="mis show_mis"><span class="n"><a href="#t313">313</a></span><span class="t"> <span class="nam">file_path</span> <span class="op">=</span> <span class="nam">get_household_head_age_by_size_path</span><span class="op">(</span><span class="nam">datadir</span><span class="op">,</span> <span class="nam">state_location</span><span class="op">=</span><span class="str">'Washington'</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">=</span><span class="str">'usa'</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t314" class="mis show_mis"><span class="n"><a href="#t314">314</a></span><span class="t"> <span class="nam">df</span> <span class="op">=</span> <span class="nam">pd</span><span class="op">.</span><span class="nam">read_csv</span><span class="op">(</span><span class="nam">file_path</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t315" class="pln"><span class="n"><a href="#t315">315</a></span><span class="t"> <span class="key">else</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t316" class="mis show_mis"><span class="n"><a href="#t316">316</a></span><span class="t"> <span class="key">raise</span> <span class="nam">NotImplementedError</span><span class="op">(</span><span class="str">"Data unavailable for the location specified. Please check input strings or set use_default to True to use default values from Seattle, Washington."</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t317" class="run"><span class="n"><a href="#t317">317</a></span><span class="t"> <span class="key">return</span> <span class="nam">df</span> </span><span class="r"></span></p>
<p id="t318" class="pln"><span class="n"><a href="#t318">318</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t319" class="pln"><span class="n"><a href="#t319">319</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t320" class="run"><span class="n"><a href="#t320">320</a></span><span class="t"><span class="key">def</span> <span class="nam">get_head_age_by_size_distr</span><span class="op">(</span><span class="nam">datadir</span><span class="op">,</span> <span class="nam">state_location</span><span class="op">=</span><span class="key">None</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">=</span><span class="key">None</span><span class="op">,</span> <span class="nam">file_path</span><span class="op">=</span><span class="key">None</span><span class="op">,</span> <span class="nam">household_size_1_included</span><span class="op">=</span><span class="key">False</span><span class="op">,</span> <span class="nam">use_default</span><span class="op">=</span><span class="key">False</span><span class="op">)</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t321" class="pln"><span class="n"><a href="#t321">321</a></span><span class="t"> <span class="str">"""</span> </span><span class="r"></span></p>
<p id="t322" class="pln"><span class="n"><a href="#t322">322</a></span><span class="t"><span class="str"> Create an array of head of household age bracket counts (col) given by size (row). If use_default, then we'll first try to look for location</span> </span><span class="r"></span></p>
<p id="t323" class="pln"><span class="n"><a href="#t323">323</a></span><span class="t"><span class="str"> specific data and if that's not available we'll use default data from Seattle, WA. This may not be appropriate for the population under study</span> </span><span class="r"></span></p>
<p id="t324" class="pln"><span class="n"><a href="#t324">324</a></span><span class="t"><span class="str"> so it's best to provide as much data as you can for the specific population.</span> </span><span class="r"></span></p>
<p id="t325" class="pln"><span class="n"><a href="#t325">325</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t326" class="pln"><span class="n"><a href="#t326">326</a></span><span class="t"><span class="str"> Args:</span> </span><span class="r"></span></p>
<p id="t327" class="pln"><span class="n"><a href="#t327">327</a></span><span class="t"><span class="str"> datadir (string) : file path to the data directory</span> </span><span class="r"></span></p>
<p id="t328" class="pln"><span class="n"><a href="#t328">328</a></span><span class="t"><span class="str"> state_location (string) : name of the state</span> </span><span class="r"></span></p>
<p id="t329" class="pln"><span class="n"><a href="#t329">329</a></span><span class="t"><span class="str"> country_location (string) : name of the country the state_location is in</span> </span><span class="r"></span></p>
<p id="t330" class="pln"><span class="n"><a href="#t330">330</a></span><span class="t"><span class="str"> file_path (string) : file path to user specified gender by age bracket distribution data</span> </span><span class="r"></span></p>
<p id="t331" class="pln"><span class="n"><a href="#t331">331</a></span><span class="t"><span class="str"> household_size_1_included : if True, age distribution for who lives alone is included in the head of household age by household size dataframe, so it will be used. Else, assume a uniform distribution for this among all ages of adults.</span> </span><span class="r"></span></p>
<p id="t332" class="pln"><span class="n"><a href="#t332">332</a></span><span class="t"><span class="str"> use_default (bool) : if True, try to first use the other parameters to find data specific to the location under study, otherwise returns default data drawing from Seattle, Washington.</span> </span><span class="r"></span></p>
<p id="t333" class="pln"><span class="n"><a href="#t333">333</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t334" class="pln"><span class="n"><a href="#t334">334</a></span><span class="t"><span class="str"> Returns:</span> </span><span class="r"></span></p>
<p id="t335" class="pln"><span class="n"><a href="#t335">335</a></span><span class="t"><span class="str"> An array where each row s represents the age distribution of the head of households for households of size s-1.</span> </span><span class="r"></span></p>
<p id="t336" class="pln"><span class="n"><a href="#t336">336</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t337" class="pln"><span class="n"><a href="#t337">337</a></span><span class="t"><span class="str"> """</span> </span><span class="r"></span></p>
<p id="t338" class="run"><span class="n"><a href="#t338">338</a></span><span class="t"> <span class="nam">hha_df</span> <span class="op">=</span> <span class="nam">get_household_head_age_by_size_df</span><span class="op">(</span><span class="nam">datadir</span><span class="op">,</span> <span class="nam">state_location</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">,</span> <span class="nam">file_path</span><span class="op">,</span> <span class="nam">use_default</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t339" class="run"><span class="n"><a href="#t339">339</a></span><span class="t"> <span class="nam">hha_by_size</span> <span class="op">=</span> <span class="nam">np</span><span class="op">.</span><span class="nam">zeros</span><span class="op">(</span><span class="op">(</span><span class="num">2</span> <span class="op">+</span> <span class="nam">len</span><span class="op">(</span><span class="nam">hha_df</span><span class="op">)</span><span class="op">,</span> <span class="nam">len</span><span class="op">(</span><span class="nam">hha_df</span><span class="op">.</span><span class="nam">columns</span><span class="op">)</span><span class="op">-</span><span class="num">1</span><span class="op">)</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t340" class="run"><span class="n"><a href="#t340">340</a></span><span class="t"> <span class="key">if</span> <span class="nam">household_size_1_included</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t341" class="mis show_mis"><span class="n"><a href="#t341">341</a></span><span class="t"> <span class="key">for</span> <span class="nam">s</span> <span class="key">in</span> <span class="nam">range</span><span class="op">(</span><span class="num">1</span><span class="op">,</span> <span class="nam">len</span><span class="op">(</span><span class="nam">hha_df</span><span class="op">)</span><span class="op">+</span><span class="num">1</span><span class="op">)</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t342" class="mis show_mis"><span class="n"><a href="#t342">342</a></span><span class="t"> <span class="nam">d</span> <span class="op">=</span> <span class="nam">hha_df</span><span class="op">[</span><span class="nam">hha_df</span><span class="op">[</span><span class="str">'family_size'</span><span class="op">]</span> <span class="op">==</span> <span class="nam">s</span><span class="op">]</span><span class="op">.</span><span class="nam">values</span><span class="op">[</span><span class="num">0</span><span class="op">]</span><span class="op">[</span><span class="num">1</span><span class="op">:</span><span class="op">]</span> </span><span class="r"></span></p>
<p id="t343" class="mis show_mis"><span class="n"><a href="#t343">343</a></span><span class="t"> <span class="nam">hha_by_size</span><span class="op">[</span><span class="nam">s</span><span class="op">-</span><span class="num">1</span><span class="op">]</span> <span class="op">=</span> <span class="nam">d</span> </span><span class="r"></span></p>
<p id="t344" class="pln"><span class="n"><a href="#t344">344</a></span><span class="t"> <span class="key">else</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t345" class="run"><span class="n"><a href="#t345">345</a></span><span class="t"> <span class="nam">hha_by_size</span><span class="op">[</span><span class="num">0</span><span class="op">,</span> <span class="op">:</span><span class="op">]</span> <span class="op">+=</span> <span class="num">1</span> </span><span class="r"></span></p>
<p id="t346" class="run"><span class="n"><a href="#t346">346</a></span><span class="t"> <span class="key">for</span> <span class="nam">s</span> <span class="key">in</span> <span class="nam">range</span><span class="op">(</span><span class="num">2</span><span class="op">,</span> <span class="nam">len</span><span class="op">(</span><span class="nam">hha_df</span><span class="op">)</span><span class="op">+</span><span class="num">2</span><span class="op">)</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t347" class="run"><span class="n"><a href="#t347">347</a></span><span class="t"> <span class="nam">d</span> <span class="op">=</span> <span class="nam">hha_df</span><span class="op">[</span><span class="nam">hha_df</span><span class="op">[</span><span class="str">'family_size'</span><span class="op">]</span> <span class="op">==</span> <span class="nam">s</span><span class="op">]</span><span class="op">.</span><span class="nam">values</span><span class="op">[</span><span class="num">0</span><span class="op">]</span><span class="op">[</span><span class="num">1</span><span class="op">:</span><span class="op">]</span> </span><span class="r"></span></p>
<p id="t348" class="run"><span class="n"><a href="#t348">348</a></span><span class="t"> <span class="nam">hha_by_size</span><span class="op">[</span><span class="nam">s</span><span class="op">-</span><span class="num">1</span><span class="op">]</span> <span class="op">=</span> <span class="nam">d</span> </span><span class="r"></span></p>
<p id="t349" class="run"><span class="n"><a href="#t349">349</a></span><span class="t"> <span class="key">return</span> <span class="nam">hha_by_size</span> </span><span class="r"></span></p>
<p id="t350" class="pln"><span class="n"><a href="#t350">350</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t351" class="pln"><span class="n"><a href="#t351">351</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t352" class="run"><span class="n"><a href="#t352">352</a></span><span class="t"><span class="key">def</span> <span class="nam">get_census_age_brackets_path</span><span class="op">(</span><span class="nam">datadir</span><span class="op">,</span> <span class="nam">state_location</span><span class="op">=</span><span class="key">None</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">=</span><span class="key">None</span><span class="op">)</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t353" class="pln"><span class="n"><a href="#t353">353</a></span><span class="t"> <span class="str">"""</span> </span><span class="r"></span></p>
<p id="t354" class="pln"><span class="n"><a href="#t354">354</a></span><span class="t"><span class="str"> Get file_path for census age brackets: depends on the state or country of the source data on contact patterns.</span> </span><span class="r"></span></p>
<p id="t355" class="pln"><span class="n"><a href="#t355">355</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t356" class="pln"><span class="n"><a href="#t356">356</a></span><span class="t"><span class="str"> Args:</span> </span><span class="r"></span></p>
<p id="t357" class="pln"><span class="n"><a href="#t357">357</a></span><span class="t"><span class="str"> datadir (string) : file path to the data directory</span> </span><span class="r"></span></p>
<p id="t358" class="pln"><span class="n"><a href="#t358">358</a></span><span class="t"><span class="str"> state_location (string) : name of the state</span> </span><span class="r"></span></p>
<p id="t359" class="pln"><span class="n"><a href="#t359">359</a></span><span class="t"><span class="str"> country_location (string) : name of the country the state_location is in</span> </span><span class="r"></span></p>
<p id="t360" class="pln"><span class="n"><a href="#t360">360</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t361" class="pln"><span class="n"><a href="#t361">361</a></span><span class="t"><span class="str"> Returns:</span> </span><span class="r"></span></p>
<p id="t362" class="pln"><span class="n"><a href="#t362">362</a></span><span class="t"><span class="str"> A file path to the age brackets to be used with census age data in combination with the contact matrix data.</span> </span><span class="r"></span></p>
<p id="t363" class="pln"><span class="n"><a href="#t363">363</a></span><span class="t"><span class="str"> """</span> </span><span class="r"></span></p>
<p id="t364" class="run"><span class="n"><a href="#t364">364</a></span><span class="t"> <span class="nam">levels</span> <span class="op">=</span> <span class="op">[</span><span class="nam">state_location</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">]</span> </span><span class="r"></span></p>
<p id="t365" class="run"><span class="n"><a href="#t365">365</a></span><span class="t"> <span class="key">if</span> <span class="nam">all</span><span class="op">(</span><span class="nam">level</span> <span class="key">is</span> <span class="key">None</span> <span class="key">for</span> <span class="nam">level</span> <span class="key">in</span> <span class="nam">levels</span><span class="op">)</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t366" class="mis show_mis"><span class="n"><a href="#t366">366</a></span><span class="t"> <span class="key">raise</span> <span class="nam">NotImplementedError</span><span class="op">(</span><span class="str">"Missing input strings. Try again."</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t367" class="run"><span class="n"><a href="#t367">367</a></span><span class="t"> <span class="key">elif</span> <span class="nam">country_location</span> <span class="key">is</span> <span class="key">None</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t368" class="mis show_mis"><span class="n"><a href="#t368">368</a></span><span class="t"> <span class="key">raise</span> <span class="nam">NotImplementedError</span><span class="op">(</span><span class="str">"Missing country_location string. Please check that you have supplied this string."</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t369" class="run"><span class="n"><a href="#t369">369</a></span><span class="t"> <span class="key">elif</span> <span class="nam">state_location</span> <span class="key">is</span> <span class="key">None</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t370" class="mis show_mis"><span class="n"><a href="#t370">370</a></span><span class="t"> <span class="key">return</span> <span class="nam">os</span><span class="op">.</span><span class="nam">path</span><span class="op">.</span><span class="nam">join</span><span class="op">(</span><span class="nam">datadir</span><span class="op">,</span> <span class="str">'demographics'</span><span class="op">,</span> <span class="str">'contact_matrices_152_countries'</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">,</span> <span class="str">f'census_age_brackets_{cfg.nbrackets}.dat'</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t371" class="pln"><span class="n"><a href="#t371">371</a></span><span class="t"> <span class="key">else</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t372" class="run"><span class="n"><a href="#t372">372</a></span><span class="t"> <span class="key">return</span> <span class="nam">os</span><span class="op">.</span><span class="nam">path</span><span class="op">.</span><span class="nam">join</span><span class="op">(</span><span class="nam">datadir</span><span class="op">,</span> <span class="str">'demographics'</span><span class="op">,</span> <span class="str">'contact_matrices_152_countries'</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">,</span> <span class="nam">state_location</span><span class="op">,</span> <span class="str">f'census_age_brackets_{cfg.nbrackets}.dat'</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t373" class="pln"><span class="n"><a href="#t373">373</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t374" class="pln"><span class="n"><a href="#t374">374</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t375" class="run"><span class="n"><a href="#t375">375</a></span><span class="t"><span class="key">def</span> <span class="nam">get_census_age_brackets</span><span class="op">(</span><span class="nam">datadir</span><span class="op">,</span> <span class="nam">state_location</span><span class="op">=</span><span class="key">None</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">=</span><span class="key">None</span><span class="op">,</span> <span class="nam">file_path</span><span class="op">=</span><span class="key">None</span><span class="op">,</span> <span class="nam">use_default</span><span class="op">=</span><span class="key">False</span><span class="op">)</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t376" class="pln"><span class="n"><a href="#t376">376</a></span><span class="t"> <span class="str">"""</span> </span><span class="r"></span></p>
<p id="t377" class="pln"><span class="n"><a href="#t377">377</a></span><span class="t"><span class="str"> Get census age brackets: depends on the country or source of contact pattern data. If use_default, then we'll</span> </span><span class="r"></span></p>
<p id="t378" class="pln"><span class="n"><a href="#t378">378</a></span><span class="t"><span class="str"> first try to look for location specific data and if that's not available we'll use default data from Seattle, WA.</span> </span><span class="r"></span></p>
<p id="t379" class="pln"><span class="n"><a href="#t379">379</a></span><span class="t"><span class="str"> This may not be appropriate for the population under study so it's best to provide as much data as you can for the</span> </span><span class="r"></span></p>
<p id="t380" class="pln"><span class="n"><a href="#t380">380</a></span><span class="t"><span class="str"> specific population.</span> </span><span class="r"></span></p>
<p id="t381" class="pln"><span class="n"><a href="#t381">381</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t382" class="pln"><span class="n"><a href="#t382">382</a></span><span class="t"><span class="str"> Args:</span> </span><span class="r"></span></p>
<p id="t383" class="pln"><span class="n"><a href="#t383">383</a></span><span class="t"><span class="str"> datadir (string) : file path to the data directory</span> </span><span class="r"></span></p>
<p id="t384" class="pln"><span class="n"><a href="#t384">384</a></span><span class="t"><span class="str"> state_location (string) : name of the state</span> </span><span class="r"></span></p>
<p id="t385" class="pln"><span class="n"><a href="#t385">385</a></span><span class="t"><span class="str"> country_location (string) : name of the country the state_location is in</span> </span><span class="r"></span></p>
<p id="t386" class="pln"><span class="n"><a href="#t386">386</a></span><span class="t"><span class="str"> file_path (string) : file path to user specified gender by age bracket distribution data</span> </span><span class="r"></span></p>
<p id="t387" class="pln"><span class="n"><a href="#t387">387</a></span><span class="t"><span class="str"> household_size_1_included : if True, age distribution for who lives alone is included in the head of household age by household size dataframe, so it will be used. Else, assume a uniform distribution for this among all ages of adults.</span> </span><span class="r"></span></p>
<p id="t388" class="pln"><span class="n"><a href="#t388">388</a></span><span class="t"><span class="str"> use_default (bool) : if True, try to first use the other parameters to find data specific to the location under study, otherwise returns default data drawing from Seattle, Washington.</span> </span><span class="r"></span></p>
<p id="t389" class="pln"><span class="n"><a href="#t389">389</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t390" class="pln"><span class="n"><a href="#t390">390</a></span><span class="t"><span class="str"> Returns:</span> </span><span class="r"></span></p>
<p id="t391" class="pln"><span class="n"><a href="#t391">391</a></span><span class="t"><span class="str"> A dictionary of the range of ages that map to each age bracket.</span> </span><span class="r"></span></p>
<p id="t392" class="pln"><span class="n"><a href="#t392">392</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t393" class="pln"><span class="n"><a href="#t393">393</a></span><span class="t"><span class="str"> """</span> </span><span class="r"></span></p>
<p id="t394" class="run"><span class="n"><a href="#t394">394</a></span><span class="t"> <span class="key">if</span> <span class="nam">file_path</span> <span class="key">is</span> <span class="key">None</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t395" class="run"><span class="n"><a href="#t395">395</a></span><span class="t"> <span class="nam">file_path</span> <span class="op">=</span> <span class="nam">get_census_age_brackets_path</span><span class="op">(</span><span class="nam">datadir</span><span class="op">,</span> <span class="nam">state_location</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t396" class="run"><span class="n"><a href="#t396">396</a></span><span class="t"> <span class="key">try</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t397" class="run"><span class="n"><a href="#t397">397</a></span><span class="t"> <span class="nam">age_brackets</span> <span class="op">=</span> <span class="nam">get_age_brackets_from_df</span><span class="op">(</span><span class="nam">file_path</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t398" class="mis show_mis"><span class="n"><a href="#t398">398</a></span><span class="t"> <span class="key">except</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t399" class="mis show_mis"><span class="n"><a href="#t399">399</a></span><span class="t"> <span class="key">if</span> <span class="nam">use_default</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t400" class="mis show_mis"><span class="n"><a href="#t400">400</a></span><span class="t"> <span class="nam">file_path</span> <span class="op">=</span> <span class="nam">get_census_age_brackets_path</span><span class="op">(</span><span class="nam">datadir</span><span class="op">,</span> <span class="nam">state_location</span><span class="op">=</span><span class="str">'Washington'</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">=</span><span class="str">'usa'</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t401" class="mis show_mis"><span class="n"><a href="#t401">401</a></span><span class="t"> <span class="nam">age_brackets</span> <span class="op">=</span> <span class="nam">get_age_brackets_from_df</span><span class="op">(</span><span class="nam">file_path</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t402" class="pln"><span class="n"><a href="#t402">402</a></span><span class="t"> <span class="key">else</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t403" class="mis show_mis"><span class="n"><a href="#t403">403</a></span><span class="t"> <span class="key">raise</span> <span class="nam">NotImplementedError</span><span class="op">(</span><span class="str">"Data unavailable for the location specified. Please check input strings or set use_default to True to use default values from Seattle, Washington."</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t404" class="run"><span class="n"><a href="#t404">404</a></span><span class="t"> <span class="key">return</span> <span class="nam">age_brackets</span> </span><span class="r"></span></p>
<p id="t405" class="pln"><span class="n"><a href="#t405">405</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t406" class="pln"><span class="n"><a href="#t406">406</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t407" class="run"><span class="n"><a href="#t407">407</a></span><span class="t"><span class="key">def</span> <span class="nam">get_contact_matrix</span><span class="op">(</span><span class="nam">datadir</span><span class="op">,</span> <span class="nam">setting_code</span><span class="op">,</span> <span class="nam">sheet_name</span><span class="op">=</span><span class="key">None</span><span class="op">,</span> <span class="nam">file_path</span><span class="op">=</span><span class="key">None</span><span class="op">,</span> <span class="nam">delimiter</span><span class="op">=</span><span class="str">' '</span><span class="op">,</span> <span class="nam">header</span><span class="op">=</span><span class="key">None</span><span class="op">)</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t408" class="pln"><span class="n"><a href="#t408">408</a></span><span class="t"> <span class="str">"""</span> </span><span class="r"></span></p>
<p id="t409" class="pln"><span class="n"><a href="#t409">409</a></span><span class="t"><span class="str"> Get setting specific contact matrix given sheet name to use. If file_path is given, then delimiter and header should also be specified.</span> </span><span class="r"></span></p>
<p id="t410" class="pln"><span class="n"><a href="#t410">410</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t411" class="pln"><span class="n"><a href="#t411">411</a></span><span class="t"><span class="str"> Args:</span> </span><span class="r"></span></p>
<p id="t412" class="pln"><span class="n"><a href="#t412">412</a></span><span class="t"><span class="str"> datadir (string) : file path to the data directory</span> </span><span class="r"></span></p>
<p id="t413" class="pln"><span class="n"><a href="#t413">413</a></span><span class="t"><span class="str"> setting_code (string) : name of the physial contact setting: H for households, S for schools, W for workplaces, C for community or other</span> </span><span class="r"></span></p>
<p id="t414" class="pln"><span class="n"><a href="#t414">414</a></span><span class="t"><span class="str"> sheet_name (string) : name of the sheet in the excel file with contact patterns</span> </span><span class="r"></span></p>
<p id="t415" class="pln"><span class="n"><a href="#t415">415</a></span><span class="t"><span class="str"> file_path (string) : file path to user specified gender by age bracket distribution data</span> </span><span class="r"></span></p>
<p id="t416" class="pln"><span class="n"><a href="#t416">416</a></span><span class="t"><span class="str"> delimiter (string) : delimter for the contact matrix file</span> </span><span class="r"></span></p>
<p id="t417" class="pln"><span class="n"><a href="#t417">417</a></span><span class="t"><span class="str"> header (int) : row number for the header of the file</span> </span><span class="r"></span></p>
<p id="t418" class="pln"><span class="n"><a href="#t418">418</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t419" class="pln"><span class="n"><a href="#t419">419</a></span><span class="t"><span class="str"> Returns:</span> </span><span class="r"></span></p>
<p id="t420" class="pln"><span class="n"><a href="#t420">420</a></span><span class="t"><span class="str"> Matrix of contact patterns where each row i is the average contact patterns for an individual in age bracket i and the columns represent the age brackets of their contacts. The matrix element i,j is then the contact rate, number, or frequency for the average individual in age bracket i with all of their contacts in age bracket j in that physical contact setting.</span> </span><span class="r"></span></p>
<p id="t421" class="pln"><span class="n"><a href="#t421">421</a></span><span class="t"><span class="str"> """</span> </span><span class="r"></span></p>
<p id="t422" class="run"><span class="n"><a href="#t422">422</a></span><span class="t"> <span class="key">if</span> <span class="nam">file_path</span> <span class="key">is</span> <span class="key">None</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t423" class="run"><span class="n"><a href="#t423">423</a></span><span class="t"> <span class="nam">setting_names</span> <span class="op">=</span> <span class="op">{</span><span class="str">'H'</span><span class="op">:</span> <span class="str">'home'</span><span class="op">,</span> <span class="str">'S'</span><span class="op">:</span> <span class="str">'school'</span><span class="op">,</span> <span class="str">'W'</span><span class="op">:</span> <span class="str">'work'</span><span class="op">,</span> <span class="str">'C'</span><span class="op">:</span> <span class="str">'other_locations'</span><span class="op">}</span> </span><span class="r"></span></p>
<p id="t424" class="run"><span class="n"><a href="#t424">424</a></span><span class="t"> <span class="key">if</span> <span class="nam">setting_code</span> <span class="key">in</span> <span class="nam">setting_names</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t425" class="run"><span class="n"><a href="#t425">425</a></span><span class="t"> <span class="nam">file_path</span> <span class="op">=</span> <span class="nam">os</span><span class="op">.</span><span class="nam">path</span><span class="op">.</span><span class="nam">join</span><span class="op">(</span><span class="nam">datadir</span><span class="op">,</span> <span class="str">'demographics'</span><span class="op">,</span> <span class="str">'contact_matrices_152_countries'</span><span class="op">,</span> <span class="str">'MUestimates_'</span> <span class="op">+</span> <span class="nam">setting_names</span><span class="op">[</span><span class="nam">setting_code</span><span class="op">]</span> <span class="op">+</span> <span class="str">'_1.xlsx'</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t426" class="run"><span class="n"><a href="#t426">426</a></span><span class="t"> <span class="key">try</span><span class="op">:</span> <span class="com"># Shortcut: use pre-processed data</span> </span><span class="r"></span></p>
<p id="t427" class="run"><span class="n"><a href="#t427">427</a></span><span class="t"> <span class="nam">obj_path</span> <span class="op">=</span> <span class="nam">file_path</span><span class="op">.</span><span class="nam">replace</span><span class="op">(</span><span class="str">'_1.xlsx'</span><span class="op">,</span> <span class="str">'.obj'</span><span class="op">)</span><span class="op">.</span><span class="nam">replace</span><span class="op">(</span><span class="str">'_2.xlsx'</span><span class="op">,</span> <span class="str">'.obj'</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t428" class="run"><span class="n"><a href="#t428">428</a></span><span class="t"> <span class="nam">data</span> <span class="op">=</span> <span class="nam">sc</span><span class="op">.</span><span class="nam">loadobj</span><span class="op">(</span><span class="nam">obj_path</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t429" class="run"><span class="n"><a href="#t429">429</a></span><span class="t"> <span class="nam">arr</span> <span class="op">=</span> <span class="nam">data</span><span class="op">[</span><span class="nam">sheet_name</span><span class="op">]</span> </span><span class="r"></span></p>
<p id="t430" class="run"><span class="n"><a href="#t430">430</a></span><span class="t"> <span class="key">return</span> <span class="nam">arr</span> </span><span class="r"></span></p>
<p id="t431" class="mis show_mis"><span class="n"><a href="#t431">431</a></span><span class="t"> <span class="key">except</span> <span class="nam">Exception</span> <span class="key">as</span> <span class="nam">E</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t432" class="mis show_mis"><span class="n"><a href="#t432">432</a></span><span class="t"> <span class="nam">errormsg</span> <span class="op">=</span> <span class="str">f'Warning: could not load pickled data ({str(E)}), defaulting to Excel...'</span> </span><span class="r"></span></p>
<p id="t433" class="mis show_mis"><span class="n"><a href="#t433">433</a></span><span class="t"> <span class="nam">print</span><span class="op">(</span><span class="nam">errormsg</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t434" class="mis show_mis"><span class="n"><a href="#t434">434</a></span><span class="t"> <span class="key">try</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t435" class="mis show_mis"><span class="n"><a href="#t435">435</a></span><span class="t"> <span class="nam">df</span> <span class="op">=</span> <span class="nam">pd</span><span class="op">.</span><span class="nam">read_excel</span><span class="op">(</span><span class="nam">file_path</span><span class="op">,</span> <span class="nam">sheet_name</span><span class="op">=</span><span class="nam">sheet_name</span><span class="op">,</span> <span class="nam">header</span><span class="op">=</span><span class="num">0</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t436" class="mis show_mis"><span class="n"><a href="#t436">436</a></span><span class="t"> <span class="key">except</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t437" class="mis show_mis"><span class="n"><a href="#t437">437</a></span><span class="t"> <span class="nam">file_path</span> <span class="op">=</span> <span class="nam">file_path</span><span class="op">.</span><span class="nam">replace</span><span class="op">(</span><span class="str">'_1.xlsx'</span><span class="op">,</span> <span class="str">'_2.xlsx'</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t438" class="mis show_mis"><span class="n"><a href="#t438">438</a></span><span class="t"> <span class="nam">df</span> <span class="op">=</span> <span class="nam">pd</span><span class="op">.</span><span class="nam">read_excel</span><span class="op">(</span><span class="nam">file_path</span><span class="op">,</span> <span class="nam">sheet_name</span><span class="op">=</span><span class="nam">sheet_name</span><span class="op">,</span> <span class="nam">header</span><span class="op">=</span><span class="key">None</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t439" class="mis show_mis"><span class="n"><a href="#t439">439</a></span><span class="t"> <span class="key">return</span> <span class="nam">np</span><span class="op">.</span><span class="nam">array</span><span class="op">(</span><span class="nam">df</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t440" class="pln"><span class="n"><a href="#t440">440</a></span><span class="t"> <span class="key">else</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t441" class="mis show_mis"><span class="n"><a href="#t441">441</a></span><span class="t"> <span class="key">raise</span> <span class="nam">NotImplementedError</span><span class="op">(</span><span class="str">"Invalid setting code. Try again."</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t442" class="pln"><span class="n"><a href="#t442">442</a></span><span class="t"> <span class="key">else</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t443" class="mis show_mis"><span class="n"><a href="#t443">443</a></span><span class="t"> <span class="key">try</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t444" class="mis show_mis"><span class="n"><a href="#t444">444</a></span><span class="t"> <span class="nam">df</span> <span class="op">=</span> <span class="nam">pd</span><span class="op">.</span><span class="nam">read_csv</span><span class="op">(</span><span class="nam">file_path</span><span class="op">,</span> <span class="nam">delimiter</span><span class="op">=</span><span class="nam">delimiter</span><span class="op">,</span> <span class="nam">header</span><span class="op">=</span><span class="nam">header</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t445" class="mis show_mis"><span class="n"><a href="#t445">445</a></span><span class="t"> <span class="key">return</span> <span class="nam">np</span><span class="op">.</span><span class="nam">array</span><span class="op">(</span><span class="nam">df</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t446" class="mis show_mis"><span class="n"><a href="#t446">446</a></span><span class="t"> <span class="key">except</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t447" class="mis show_mis"><span class="n"><a href="#t447">447</a></span><span class="t"> <span class="key">raise</span> <span class="nam">NotImplementedError</span><span class="op">(</span><span class="str">"Contact matrix did not open. Check inputs."</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t448" class="pln"><span class="n"><a href="#t448">448</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t449" class="pln"><span class="n"><a href="#t449">449</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t450" class="run"><span class="n"><a href="#t450">450</a></span><span class="t"><span class="key">def</span> <span class="nam">get_contact_matrix_dic</span><span class="op">(</span><span class="nam">datadir</span><span class="op">,</span> <span class="nam">sheet_name</span><span class="op">=</span><span class="key">None</span><span class="op">,</span> <span class="nam">file_path_dic</span><span class="op">=</span><span class="key">None</span><span class="op">,</span> <span class="nam">delimiter</span><span class="op">=</span><span class="str">' '</span><span class="op">,</span> <span class="nam">header</span><span class="op">=</span><span class="key">None</span><span class="op">,</span> <span class="nam">use_default</span><span class="op">=</span><span class="key">False</span><span class="op">)</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t451" class="pln"><span class="n"><a href="#t451">451</a></span><span class="t"> <span class="str">"""</span> </span><span class="r"></span></p>
<p id="t452" class="pln"><span class="n"><a href="#t452">452</a></span><span class="t"><span class="str"> Create a dict of setting specific age mixing matrices. If use_default, then we'll first try to look for location specific</span> </span><span class="r"></span></p>
<p id="t453" class="pln"><span class="n"><a href="#t453">453</a></span><span class="t"><span class="str"> data and if that's not available we'll use default data from Seattle, WA. This may not be appropriate for the population</span> </span><span class="r"></span></p>
<p id="t454" class="pln"><span class="n"><a href="#t454">454</a></span><span class="t"><span class="str"> under study so it's best to provide as much data as you can for the specific population.</span> </span><span class="r"></span></p>
<p id="t455" class="pln"><span class="n"><a href="#t455">455</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t456" class="pln"><span class="n"><a href="#t456">456</a></span><span class="t"><span class="str"> Args:</span> </span><span class="r"></span></p>
<p id="t457" class="pln"><span class="n"><a href="#t457">457</a></span><span class="t"><span class="str"> datadir (string) : file path to the data directory</span> </span><span class="r"></span></p>
<p id="t458" class="pln"><span class="n"><a href="#t458">458</a></span><span class="t"><span class="str"> setting_code (string) : name of the physial contact setting: H for households, S for schools, W for workplaces, C for community or other</span> </span><span class="r"></span></p>
<p id="t459" class="pln"><span class="n"><a href="#t459">459</a></span><span class="t"><span class="str"> sheet_name (string) : name of the sheet in the excel file with contact patterns</span> </span><span class="r"></span></p>
<p id="t460" class="pln"><span class="n"><a href="#t460">460</a></span><span class="t"><span class="str"> file_path (string) : file path to user specified gender by age bracket distribution data</span> </span><span class="r"></span></p>
<p id="t461" class="pln"><span class="n"><a href="#t461">461</a></span><span class="t"><span class="str"> delimiter (string) : delimter for the contact matrix file</span> </span><span class="r"></span></p>
<p id="t462" class="pln"><span class="n"><a href="#t462">462</a></span><span class="t"><span class="str"> header (int) : row number for the header of the file</span> </span><span class="r"></span></p>
<p id="t463" class="pln"><span class="n"><a href="#t463">463</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t464" class="pln"><span class="n"><a href="#t464">464</a></span><span class="t"><span class="str"> Returns:</span> </span><span class="r"></span></p>
<p id="t465" class="pln"><span class="n"><a href="#t465">465</a></span><span class="t"><span class="str"> A dictionary of the different contact matrices for each population, given by the sheet name. Keys map to the different possible physical contact settings for which data are available.</span> </span><span class="r"></span></p>
<p id="t466" class="pln"><span class="n"><a href="#t466">466</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t467" class="pln"><span class="n"><a href="#t467">467</a></span><span class="t"><span class="str"> """</span> </span><span class="r"></span></p>
<p id="t468" class="run"><span class="n"><a href="#t468">468</a></span><span class="t"> <span class="nam">matrix_dic</span> <span class="op">=</span> <span class="op">{</span><span class="op">}</span> </span><span class="r"></span></p>
<p id="t469" class="run"><span class="n"><a href="#t469">469</a></span><span class="t"> <span class="key">if</span> <span class="nam">file_path_dic</span> <span class="key">is</span> <span class="key">None</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t470" class="run"><span class="n"><a href="#t470">470</a></span><span class="t"> <span class="nam">file_path_dic</span> <span class="op">=</span> <span class="nam">dict</span><span class="op">.</span><span class="nam">fromkeys</span><span class="op">(</span><span class="op">[</span><span class="str">'H'</span><span class="op">,</span> <span class="str">'S'</span><span class="op">,</span> <span class="str">'W'</span><span class="op">,</span> <span class="str">'C'</span><span class="op">]</span><span class="op">,</span> <span class="key">None</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t471" class="run"><span class="n"><a href="#t471">471</a></span><span class="t"> <span class="key">try</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t472" class="run"><span class="n"><a href="#t472">472</a></span><span class="t"> <span class="key">for</span> <span class="nam">setting_code</span> <span class="key">in</span> <span class="op">[</span><span class="str">'H'</span><span class="op">,</span> <span class="str">'S'</span><span class="op">,</span> <span class="str">'W'</span><span class="op">,</span> <span class="str">'C'</span><span class="op">]</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t473" class="run"><span class="n"><a href="#t473">473</a></span><span class="t"> <span class="nam">matrix_dic</span><span class="op">[</span><span class="nam">setting_code</span><span class="op">]</span> <span class="op">=</span> <span class="nam">get_contact_matrix</span><span class="op">(</span><span class="nam">datadir</span><span class="op">,</span> <span class="nam">setting_code</span><span class="op">,</span> <span class="nam">sheet_name</span><span class="op">,</span> <span class="nam">file_path_dic</span><span class="op">[</span><span class="nam">setting_code</span><span class="op">]</span><span class="op">,</span> <span class="nam">delimiter</span><span class="op">,</span> <span class="nam">header</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t474" class="mis show_mis"><span class="n"><a href="#t474">474</a></span><span class="t"> <span class="key">except</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t475" class="mis show_mis"><span class="n"><a href="#t475">475</a></span><span class="t"> <span class="key">if</span> <span class="nam">use_default</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t476" class="mis show_mis"><span class="n"><a href="#t476">476</a></span><span class="t"> <span class="key">for</span> <span class="nam">setting_code</span> <span class="key">in</span> <span class="op">[</span><span class="str">'H'</span><span class="op">,</span> <span class="str">'S'</span><span class="op">,</span> <span class="str">'W'</span><span class="op">,</span> <span class="str">'C'</span><span class="op">]</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t477" class="mis show_mis"><span class="n"><a href="#t477">477</a></span><span class="t"> <span class="nam">matrix_dic</span><span class="op">[</span><span class="nam">setting_code</span><span class="op">]</span> <span class="op">=</span> <span class="nam">get_contact_matrix</span><span class="op">(</span><span class="nam">datadir</span><span class="op">,</span> <span class="nam">setting_code</span><span class="op">,</span> <span class="nam">sheet_name</span><span class="op">=</span><span class="str">'United States of America'</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t478" class="pln"><span class="n"><a href="#t478">478</a></span><span class="t"> <span class="key">else</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t479" class="mis show_mis"><span class="n"><a href="#t479">479</a></span><span class="t"> <span class="key">raise</span> <span class="nam">NotImplementedError</span><span class="op">(</span><span class="str">"Data unavailable for the location specified. Please check input strings or set use_default to True to use default values from Seattle, Washington."</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t480" class="run"><span class="n"><a href="#t480">480</a></span><span class="t"> <span class="key">return</span> <span class="nam">matrix_dic</span> </span><span class="r"></span></p>
<p id="t481" class="pln"><span class="n"><a href="#t481">481</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t482" class="pln"><span class="n"><a href="#t482">482</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t483" class="pln"><span class="n"><a href="#t483">483</a></span><span class="t"><span class="com"># School enrollment data specific for Seattle / United States of America. Change name to reflect that</span> </span><span class="r"></span></p>
<p id="t484" class="pln"><span class="n"><a href="#t484">484</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t485" class="run"><span class="n"><a href="#t485">485</a></span><span class="t"><span class="key">def</span> <span class="nam">get_usa_school_enrollment_rates_df</span><span class="op">(</span><span class="nam">datadir</span><span class="op">,</span> <span class="nam">locations</span><span class="op">,</span> <span class="nam">location</span><span class="op">,</span> <span class="nam">state_location</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">,</span> <span class="nam">level</span><span class="op">)</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t486" class="pln"><span class="n"><a href="#t486">486</a></span><span class="t"> <span class="str">"""</span> </span><span class="r"></span></p>
<p id="t487" class="pln"><span class="n"><a href="#t487">487</a></span><span class="t"><span class="str"> Filters a dataframe on school enrollment rates in the US at the scale of county or PUMA down to relevant locations in the state. Specifying locations as a list allow the selection of</span> </span><span class="r"></span></p>
<p id="t488" class="pln"><span class="n"><a href="#t488">488</a></span><span class="t"><span class="str"> multiple counties in the same state, in whatever combination desired.</span> </span><span class="r"></span></p>
<p id="t489" class="pln"><span class="n"><a href="#t489">489</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t490" class="pln"><span class="n"><a href="#t490">490</a></span><span class="t"><span class="str"> Args:</span> </span><span class="r"></span></p>
<p id="t491" class="pln"><span class="n"><a href="#t491">491</a></span><span class="t"><span class="str"> datadir (string) : file path to the data directory</span> </span><span class="r"></span></p>
<p id="t492" class="pln"><span class="n"><a href="#t492">492</a></span><span class="t"><span class="str"> locations (string or list): name of locations to filter for, either as a string or a list of multiple locations</span> </span><span class="r"></span></p>
<p id="t493" class="pln"><span class="n"><a href="#t493">493</a></span><span class="t"><span class="str"> location (string) : name of the location</span> </span><span class="r"></span></p>
<p id="t494" class="pln"><span class="n"><a href="#t494">494</a></span><span class="t"><span class="str"> state_location (string) : name of the state the location is in</span> </span><span class="r"></span></p>
<p id="t495" class="pln"><span class="n"><a href="#t495">495</a></span><span class="t"><span class="str"> country_location (string) : name of the country the location is in, which here should always be 'usa'</span> </span><span class="r"></span></p>
<p id="t496" class="pln"><span class="n"><a href="#t496">496</a></span><span class="t"><span class="str"> level (string) : name of the level at which the data are aggregated, in general 'county' but could also be 'PUMA'</span> </span><span class="r"></span></p>
<p id="t497" class="pln"><span class="n"><a href="#t497">497</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t498" class="pln"><span class="n"><a href="#t498">498</a></span><span class="t"><span class="str"> Returns:</span> </span><span class="r"></span></p>
<p id="t499" class="pln"><span class="n"><a href="#t499">499</a></span><span class="t"><span class="str"> Pandas dataframe with school enrollment data in the US for at the scale of county of PUMA for specified locations within the same state.</span> </span><span class="r"></span></p>
<p id="t500" class="pln"><span class="n"><a href="#t500">500</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t501" class="pln"><span class="n"><a href="#t501">501</a></span><span class="t"><span class="str"> Example usage:</span> </span><span class="r"></span></p>
<p id="t502" class="pln"><span class="n"><a href="#t502">502</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t503" class="pln"><span class="n"><a href="#t503">503</a></span><span class="t"><span class="str"> locations = 'King County, Washington' for a single county</span> </span><span class="r"></span></p>
<p id="t504" class="pln"><span class="n"><a href="#t504">504</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t505" class="pln"><span class="n"><a href="#t505">505</a></span><span class="t"><span class="str"> locations = ['King County, Washington', 'Pierce County, Washington'] for multiple counties</span> </span><span class="r"></span></p>
<p id="t506" class="pln"><span class="n"><a href="#t506">506</a></span><span class="t"><span class="str"> """</span> </span><span class="r"></span></p>
<p id="t507" class="mis show_mis"><span class="n"><a href="#t507">507</a></span><span class="t"> <span class="nam">file_path</span> <span class="op">=</span> <span class="nam">os</span><span class="op">.</span><span class="nam">path</span><span class="op">.</span><span class="nam">join</span><span class="op">(</span><span class="nam">datadir</span><span class="op">,</span> <span class="str">'demographics'</span><span class="op">,</span> <span class="str">'contact_matrices_152_countries'</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">,</span> <span class="nam">state_location</span><span class="op">,</span> <span class="nam">location</span><span class="op">,</span> <span class="str">'schools'</span><span class="op">,</span> <span class="nam">level</span> <span class="op">+</span> <span class="str">'_school_enrollment_by_age'</span><span class="op">,</span><span class="str">'ACSST5Y2018.S1401_data_with_overlays_2020-03-06T233142.csv'</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t508" class="mis show_mis"><span class="n"><a href="#t508">508</a></span><span class="t"> <span class="nam">df</span> <span class="op">=</span> <span class="nam">pd</span><span class="op">.</span><span class="nam">read_csv</span><span class="op">(</span><span class="nam">file_path</span><span class="op">,</span> <span class="nam">header</span><span class="op">=</span><span class="num">1</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t509" class="mis show_mis"><span class="n"><a href="#t509">509</a></span><span class="t"> <span class="key">if</span> <span class="nam">type</span><span class="op">(</span><span class="nam">locations</span><span class="op">)</span> <span class="op">==</span> <span class="nam">list</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t510" class="mis show_mis"><span class="n"><a href="#t510">510</a></span><span class="t"> <span class="nam">d</span> <span class="op">=</span> <span class="nam">df</span><span class="op">[</span><span class="nam">df</span><span class="op">[</span><span class="str">'Geographic Area Name'</span><span class="op">]</span><span class="op">.</span><span class="nam">isin</span><span class="op">(</span><span class="nam">locations</span><span class="op">)</span><span class="op">]</span> </span><span class="r"></span></p>
<p id="t511" class="pln"><span class="n"><a href="#t511">511</a></span><span class="t"> <span class="key">else</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t512" class="mis show_mis"><span class="n"><a href="#t512">512</a></span><span class="t"> <span class="nam">d</span> <span class="op">=</span> <span class="nam">df</span><span class="op">[</span><span class="nam">df</span><span class="op">[</span><span class="str">'Geographic Area Name'</span><span class="op">]</span> <span class="op">==</span> <span class="nam">locations</span><span class="op">]</span> </span><span class="r"></span></p>
<p id="t513" class="mis show_mis"><span class="n"><a href="#t513">513</a></span><span class="t"> <span class="key">return</span> <span class="nam">d</span> </span><span class="r"></span></p>
<p id="t514" class="pln"><span class="n"><a href="#t514">514</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t515" class="pln"><span class="n"><a href="#t515">515</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t516" class="run"><span class="n"><a href="#t516">516</a></span><span class="t"><span class="key">def</span> <span class="nam">process_usa_school_enrollment_rates</span><span class="op">(</span><span class="nam">datadir</span><span class="op">,</span> <span class="nam">locations</span><span class="op">,</span> <span class="nam">location</span><span class="op">,</span> <span class="nam">state_location</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">,</span> <span class="nam">level</span><span class="op">)</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t517" class="pln"><span class="n"><a href="#t517">517</a></span><span class="t"> <span class="str">"""</span> </span><span class="r"></span></p>
<p id="t518" class="pln"><span class="n"><a href="#t518">518</a></span><span class="t"><span class="str"> Process US school enrollment rates at the county level for age groups and create a dictionary of rates for single year ages.</span> </span><span class="r"></span></p>
<p id="t519" class="pln"><span class="n"><a href="#t519">519</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t520" class="pln"><span class="n"><a href="#t520">520</a></span><span class="t"><span class="str"> Args:</span> </span><span class="r"></span></p>
<p id="t521" class="pln"><span class="n"><a href="#t521">521</a></span><span class="t"><span class="str"> datadir (string) : file path to the data directory</span> </span><span class="r"></span></p>
<p id="t522" class="pln"><span class="n"><a href="#t522">522</a></span><span class="t"><span class="str"> locations (string or list): name of locations to filter for, either as a string or a list of multiple locations</span> </span><span class="r"></span></p>
<p id="t523" class="pln"><span class="n"><a href="#t523">523</a></span><span class="t"><span class="str"> location (string) : name of the location</span> </span><span class="r"></span></p>
<p id="t524" class="pln"><span class="n"><a href="#t524">524</a></span><span class="t"><span class="str"> state_location (string) : name of the state the location is in</span> </span><span class="r"></span></p>
<p id="t525" class="pln"><span class="n"><a href="#t525">525</a></span><span class="t"><span class="str"> country_location (string) : name of the country the location is in, which here should always be 'usa'</span> </span><span class="r"></span></p>
<p id="t526" class="pln"><span class="n"><a href="#t526">526</a></span><span class="t"><span class="str"> level (string) : name of the level at which the data are aggregated, in general 'county' but could also be 'PUMA'</span> </span><span class="r"></span></p>
<p id="t527" class="pln"><span class="n"><a href="#t527">527</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t528" class="pln"><span class="n"><a href="#t528">528</a></span><span class="t"><span class="str"> Returns:</span> </span><span class="r"></span></p>
<p id="t529" class="pln"><span class="n"><a href="#t529">529</a></span><span class="t"><span class="str"> A dictionary of enrollment rates by single year ages from 0 to 100.</span> </span><span class="r"></span></p>
<p id="t530" class="pln"><span class="n"><a href="#t530">530</a></span><span class="t"><span class="str"> """</span> </span><span class="r"></span></p>
<p id="t531" class="mis show_mis"><span class="n"><a href="#t531">531</a></span><span class="t"> <span class="nam">df</span> <span class="op">=</span> <span class="nam">get_usa_school_enrollment_rates_df</span><span class="op">(</span><span class="nam">datadir</span><span class="op">,</span> <span class="nam">locations</span><span class="op">,</span> <span class="nam">location</span><span class="op">,</span> <span class="nam">state_location</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">,</span> <span class="nam">level</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t532" class="mis show_mis"><span class="n"><a href="#t532">532</a></span><span class="t"> <span class="nam">skip_labels</span> <span class="op">=</span> <span class="op">[</span><span class="str">'Error'</span><span class="op">,</span> <span class="str">'public'</span><span class="op">,</span> <span class="str">'private'</span><span class="op">,</span> <span class="str">'X'</span><span class="op">,</span> <span class="str">'Total'</span><span class="op">,</span> <span class="str">'Male'</span><span class="op">,</span> <span class="str">'Female'</span><span class="op">,</span> <span class="str">'3 years and over'</span><span class="op">,</span> <span class="str">'18 to 24'</span><span class="op">]</span> </span><span class="r"></span></p>
<p id="t533" class="mis show_mis"><span class="n"><a href="#t533">533</a></span><span class="t"> <span class="nam">columns</span> <span class="op">=</span> <span class="nam">df</span><span class="op">.</span><span class="nam">columns</span> </span><span class="r"></span></p>
<p id="t534" class="mis show_mis"><span class="n"><a href="#t534">534</a></span><span class="t"> <span class="nam">columns</span> <span class="op">=</span> <span class="op">[</span><span class="nam">col</span> <span class="key">for</span> <span class="nam">col</span> <span class="key">in</span> <span class="nam">columns</span> <span class="key">if</span> <span class="key">not</span> <span class="nam">any</span><span class="op">(</span><span class="nam">l</span> <span class="key">in</span> <span class="nam">col</span> <span class="key">for</span> <span class="nam">l</span> <span class="key">in</span> <span class="nam">skip_labels</span><span class="op">)</span><span class="op">]</span> </span><span class="r"></span></p>
<p id="t535" class="pln"><span class="n"><a href="#t535">535</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t536" class="mis show_mis"><span class="n"><a href="#t536">536</a></span><span class="t"> <span class="nam">rates</span> <span class="op">=</span> <span class="nam">dict</span><span class="op">.</span><span class="nam">fromkeys</span><span class="op">(</span><span class="nam">np</span><span class="op">.</span><span class="nam">arange</span><span class="op">(</span><span class="num">101</span><span class="op">)</span><span class="op">,</span> <span class="num">0</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t537" class="pln"><span class="n"><a href="#t537">537</a></span><span class="t"> <span class="com"># process into enrollment rates by age</span> </span><span class="r"></span></p>
<p id="t538" class="mis show_mis"><span class="n"><a href="#t538">538</a></span><span class="t"> <span class="key">for</span> <span class="nam">col</span> <span class="key">in</span> <span class="nam">columns</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t539" class="mis show_mis"><span class="n"><a href="#t539">539</a></span><span class="t"> <span class="key">if</span> <span class="str">'enrolled in school'</span> <span class="key">in</span> <span class="nam">col</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t540" class="pln"><span class="n"><a href="#t540">540</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t541" class="mis show_mis"><span class="n"><a href="#t541">541</a></span><span class="t"> <span class="nam">age_bracket</span> <span class="op">=</span> <span class="nam">col</span><span class="op">.</span><span class="nam">replace</span><span class="op">(</span><span class="str">' year olds enrolled in school'</span><span class="op">,</span> <span class="str">''</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t542" class="mis show_mis"><span class="n"><a href="#t542">542</a></span><span class="t"> <span class="nam">age_bracket</span> <span class="op">=</span> <span class="nam">age_bracket</span><span class="op">.</span><span class="nam">split</span><span class="op">(</span><span class="str">'!!'</span><span class="op">)</span><span class="op">[</span><span class="op">-</span><span class="num">1</span><span class="op">]</span> </span><span class="r"></span></p>
<p id="t543" class="pln"><span class="n"><a href="#t543">543</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t544" class="mis show_mis"><span class="n"><a href="#t544">544</a></span><span class="t"> <span class="key">if</span> <span class="str">' to '</span> <span class="key">in</span> <span class="nam">age_bracket</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t545" class="mis show_mis"><span class="n"><a href="#t545">545</a></span><span class="t"> <span class="nam">age_bracket</span> <span class="op">=</span> <span class="nam">age_bracket</span><span class="op">.</span><span class="nam">split</span><span class="op">(</span><span class="str">' to '</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t546" class="mis show_mis"><span class="n"><a href="#t546">546</a></span><span class="t"> <span class="key">elif</span> <span class="str">' and '</span> <span class="key">in</span> <span class="nam">age_bracket</span> <span class="key">and</span> <span class="str">'over'</span> <span class="key">not</span> <span class="key">in</span> <span class="nam">age_bracket</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t547" class="mis show_mis"><span class="n"><a href="#t547">547</a></span><span class="t"> <span class="nam">age_bracket</span> <span class="op">=</span> <span class="nam">age_bracket</span><span class="op">.</span><span class="nam">split</span><span class="op">(</span><span class="str">' and '</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t548" class="mis show_mis"><span class="n"><a href="#t548">548</a></span><span class="t"> <span class="key">elif</span> <span class="str">'over'</span> <span class="key">in</span> <span class="nam">age_bracket</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t549" class="mis show_mis"><span class="n"><a href="#t549">549</a></span><span class="t"> <span class="nam">age_bracket</span> <span class="op">=</span> <span class="nam">age_bracket</span><span class="op">.</span><span class="nam">replace</span><span class="op">(</span><span class="str">' years and over enrolled in school'</span><span class="op">,</span> <span class="str">''</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t550" class="pln"><span class="n"><a href="#t550">550</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t551" class="mis show_mis"><span class="n"><a href="#t551">551</a></span><span class="t"> <span class="key">if</span> <span class="nam">type</span><span class="op">(</span><span class="nam">age_bracket</span><span class="op">)</span> <span class="op">==</span> <span class="nam">list</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t552" class="mis show_mis"><span class="n"><a href="#t552">552</a></span><span class="t"> <span class="nam">sa</span><span class="op">,</span> <span class="nam">ea</span> <span class="op">=</span> <span class="nam">int</span><span class="op">(</span><span class="nam">age_bracket</span><span class="op">[</span><span class="num">0</span><span class="op">]</span><span class="op">)</span><span class="op">,</span> <span class="nam">int</span><span class="op">(</span><span class="nam">age_bracket</span><span class="op">[</span><span class="num">1</span><span class="op">]</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t553" class="pln"><span class="n"><a href="#t553">553</a></span><span class="t"> <span class="key">else</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t554" class="mis show_mis"><span class="n"><a href="#t554">554</a></span><span class="t"> <span class="nam">sa</span> <span class="op">=</span> <span class="nam">int</span><span class="op">(</span><span class="nam">age_bracket</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t555" class="mis show_mis"><span class="n"><a href="#t555">555</a></span><span class="t"> <span class="nam">ea</span> <span class="op">=</span> <span class="nam">sa</span> <span class="op">+</span> <span class="num">15</span> <span class="com"># estimate of when the last age bracket ends, this makes the last age bracket cover ages 35-50 inclusively</span> </span><span class="r"></span></p>
<p id="t556" class="pln"><span class="n"><a href="#t556">556</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t557" class="mis show_mis"><span class="n"><a href="#t557">557</a></span><span class="t"> <span class="key">for</span> <span class="nam">a</span> <span class="key">in</span> <span class="nam">np</span><span class="op">.</span><span class="nam">arange</span><span class="op">(</span><span class="nam">sa</span><span class="op">,</span> <span class="nam">ea</span><span class="op">+</span><span class="num">1</span><span class="op">)</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t558" class="mis show_mis"><span class="n"><a href="#t558">558</a></span><span class="t"> <span class="nam">rates</span><span class="op">[</span><span class="nam">a</span><span class="op">]</span> <span class="op">=</span> <span class="nam">np</span><span class="op">.</span><span class="nam">round</span><span class="op">(</span><span class="nam">df</span><span class="op">[</span><span class="nam">col</span><span class="op">]</span><span class="op">.</span><span class="nam">values</span><span class="op">[</span><span class="num">0</span><span class="op">]</span><span class="op">/</span><span class="num">100</span><span class="op">,</span> <span class="num">8</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t559" class="mis show_mis"><span class="n"><a href="#t559">559</a></span><span class="t"> <span class="key">return</span> <span class="nam">rates</span> </span><span class="r"></span></p>
<p id="t560" class="pln"><span class="n"><a href="#t560">560</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t561" class="pln"><span class="n"><a href="#t561">561</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t562" class="run"><span class="n"><a href="#t562">562</a></span><span class="t"><span class="key">def</span> <span class="nam">write_school_enrollment_rates</span><span class="op">(</span><span class="nam">datadir</span><span class="op">,</span> <span class="nam">locations</span><span class="op">,</span> <span class="nam">location</span><span class="op">,</span> <span class="nam">state_location</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">,</span> <span class="nam">level</span><span class="op">)</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t563" class="pln"><span class="n"><a href="#t563">563</a></span><span class="t"> <span class="str">"""</span> </span><span class="r"></span></p>
<p id="t564" class="pln"><span class="n"><a href="#t564">564</a></span><span class="t"><span class="str"> Write enrollment rates from age brackets into a file for single year ages.</span> </span><span class="r"></span></p>
<p id="t565" class="pln"><span class="n"><a href="#t565">565</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t566" class="pln"><span class="n"><a href="#t566">566</a></span><span class="t"><span class="str"> Args:</span> </span><span class="r"></span></p>
<p id="t567" class="pln"><span class="n"><a href="#t567">567</a></span><span class="t"><span class="str"> datadir (string) : file path to the data directory</span> </span><span class="r"></span></p>
<p id="t568" class="pln"><span class="n"><a href="#t568">568</a></span><span class="t"><span class="str"> locations (string or list): name of locations to filter for, either as a string or a list of multiple locations</span> </span><span class="r"></span></p>
<p id="t569" class="pln"><span class="n"><a href="#t569">569</a></span><span class="t"><span class="str"> location (string) : name of the location</span> </span><span class="r"></span></p>
<p id="t570" class="pln"><span class="n"><a href="#t570">570</a></span><span class="t"><span class="str"> state_location (string) : name of the state the location is in</span> </span><span class="r"></span></p>
<p id="t571" class="pln"><span class="n"><a href="#t571">571</a></span><span class="t"><span class="str"> country_location (string) : name of the country the location is in, which here should always be 'usa'</span> </span><span class="r"></span></p>
<p id="t572" class="pln"><span class="n"><a href="#t572">572</a></span><span class="t"><span class="str"> level (string) : name of the level at which the data are aggregated, in general 'county' but could also be 'PUMA'</span> </span><span class="r"></span></p>
<p id="t573" class="pln"><span class="n"><a href="#t573">573</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t574" class="pln"><span class="n"><a href="#t574">574</a></span><span class="t"><span class="str"> Returns:</span> </span><span class="r"></span></p>
<p id="t575" class="pln"><span class="n"><a href="#t575">575</a></span><span class="t"><span class="str"> None</span> </span><span class="r"></span></p>
<p id="t576" class="pln"><span class="n"><a href="#t576">576</a></span><span class="t"><span class="str"> """</span> </span><span class="r"></span></p>
<p id="t577" class="mis show_mis"><span class="n"><a href="#t577">577</a></span><span class="t"> <span class="nam">rates</span> <span class="op">=</span> <span class="nam">process_usa_school_enrollment_rates</span><span class="op">(</span><span class="nam">datadir</span><span class="op">,</span> <span class="nam">locations</span><span class="op">,</span> <span class="nam">location</span><span class="op">,</span> <span class="nam">state_location</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">,</span> <span class="nam">level</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t578" class="mis show_mis"><span class="n"><a href="#t578">578</a></span><span class="t"> <span class="nam">file_path</span> <span class="op">=</span> <span class="nam">os</span><span class="op">.</span><span class="nam">path</span><span class="op">.</span><span class="nam">join</span><span class="op">(</span><span class="nam">datadir</span><span class="op">,</span> <span class="str">'demographics'</span><span class="op">,</span> <span class="str">'contact_matrices_152_countries'</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">,</span> <span class="nam">state_location</span><span class="op">,</span> <span class="str">'enrollment'</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t579" class="mis show_mis"><span class="n"><a href="#t579">579</a></span><span class="t"> <span class="nam">os</span><span class="op">.</span><span class="nam">makedirs</span><span class="op">(</span><span class="nam">file_path</span><span class="op">,</span> <span class="nam">exist_ok</span><span class="op">=</span><span class="key">True</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t580" class="mis show_mis"><span class="n"><a href="#t580">580</a></span><span class="t"> <span class="nam">file_path</span> <span class="op">=</span> <span class="nam">os</span><span class="op">.</span><span class="nam">path</span><span class="op">.</span><span class="nam">join</span><span class="op">(</span><span class="nam">file_path</span><span class="op">,</span> <span class="nam">location</span> <span class="op">+</span> <span class="str">'_school_enrollment_by_age.dat'</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t581" class="mis show_mis"><span class="n"><a href="#t581">581</a></span><span class="t"> <span class="nam">f</span> <span class="op">=</span> <span class="nam">open</span><span class="op">(</span><span class="nam">file_path</span><span class="op">,</span> <span class="str">'w'</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t582" class="mis show_mis"><span class="n"><a href="#t582">582</a></span><span class="t"> <span class="nam">f</span><span class="op">.</span><span class="nam">write</span><span class="op">(</span><span class="str">'Age,Percent\n'</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t583" class="mis show_mis"><span class="n"><a href="#t583">583</a></span><span class="t"> <span class="key">for</span> <span class="nam">a</span> <span class="key">in</span> <span class="nam">rates</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t584" class="mis show_mis"><span class="n"><a href="#t584">584</a></span><span class="t"> <span class="nam">f</span><span class="op">.</span><span class="nam">write</span><span class="op">(</span><span class="nam">str</span><span class="op">(</span><span class="nam">a</span><span class="op">)</span> <span class="op">+</span> <span class="str">','</span> <span class="op">+</span> <span class="nam">str</span><span class="op">(</span><span class="nam">rates</span><span class="op">[</span><span class="nam">a</span><span class="op">]</span><span class="op">)</span> <span class="op">+</span> <span class="str">'\n'</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t585" class="mis show_mis"><span class="n"><a href="#t585">585</a></span><span class="t"> <span class="nam">f</span><span class="op">.</span><span class="nam">close</span><span class="op">(</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t586" class="pln"><span class="n"><a href="#t586">586</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t587" class="pln"><span class="n"><a href="#t587">587</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t588" class="run"><span class="n"><a href="#t588">588</a></span><span class="t"><span class="key">def</span> <span class="nam">get_school_enrollment_rates_path</span><span class="op">(</span><span class="nam">datadir</span><span class="op">,</span> <span class="nam">location</span><span class="op">=</span><span class="key">None</span><span class="op">,</span> <span class="nam">state_location</span><span class="op">=</span><span class="key">None</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">=</span><span class="key">None</span><span class="op">)</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t589" class="pln"><span class="n"><a href="#t589">589</a></span><span class="t"> <span class="str">"""</span> </span><span class="r"></span></p>
<p id="t590" class="pln"><span class="n"><a href="#t590">590</a></span><span class="t"><span class="str"> Get a file_path for enrollment rates by age.</span> </span><span class="r"></span></p>
<p id="t591" class="pln"><span class="n"><a href="#t591">591</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t592" class="pln"><span class="n"><a href="#t592">592</a></span><span class="t"><span class="str"> Args:</span> </span><span class="r"></span></p>
<p id="t593" class="pln"><span class="n"><a href="#t593">593</a></span><span class="t"><span class="str"> datadir (string) : file path to the data directory</span> </span><span class="r"></span></p>
<p id="t594" class="pln"><span class="n"><a href="#t594">594</a></span><span class="t"><span class="str"> location (string) : name of the location</span> </span><span class="r"></span></p>
<p id="t595" class="pln"><span class="n"><a href="#t595">595</a></span><span class="t"><span class="str"> state_location (string) : name of the state the location is in</span> </span><span class="r"></span></p>
<p id="t596" class="pln"><span class="n"><a href="#t596">596</a></span><span class="t"><span class="str"> country_location (string) : name of the country the location is in</span> </span><span class="r"></span></p>
<p id="t597" class="pln"><span class="n"><a href="#t597">597</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t598" class="pln"><span class="n"><a href="#t598">598</a></span><span class="t"><span class="str"> Returns:</span> </span><span class="r"></span></p>
<p id="t599" class="pln"><span class="n"><a href="#t599">599</a></span><span class="t"><span class="str"> A file path to the school enrollment rates.</span> </span><span class="r"></span></p>
<p id="t600" class="pln"><span class="n"><a href="#t600">600</a></span><span class="t"><span class="str"> """</span> </span><span class="r"></span></p>
<p id="t601" class="run"><span class="n"><a href="#t601">601</a></span><span class="t"> <span class="nam">levels</span> <span class="op">=</span> <span class="op">[</span><span class="nam">location</span><span class="op">,</span> <span class="nam">state_location</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">]</span> </span><span class="r"></span></p>
<p id="t602" class="run"><span class="n"><a href="#t602">602</a></span><span class="t"> <span class="key">if</span> <span class="nam">all</span><span class="op">(</span><span class="nam">level</span> <span class="key">is</span> <span class="key">None</span> <span class="key">for</span> <span class="nam">level</span> <span class="key">in</span> <span class="nam">levels</span><span class="op">)</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t603" class="mis show_mis"><span class="n"><a href="#t603">603</a></span><span class="t"> <span class="key">raise</span> <span class="nam">NotImplementedError</span><span class="op">(</span><span class="str">"Missing input strings. Try again."</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t604" class="run"><span class="n"><a href="#t604">604</a></span><span class="t"> <span class="key">elif</span> <span class="nam">country_location</span> <span class="key">is</span> <span class="key">None</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t605" class="mis show_mis"><span class="n"><a href="#t605">605</a></span><span class="t"> <span class="key">raise</span> <span class="nam">NotImplementedError</span><span class="op">(</span><span class="str">"Missing country_location string. Please check that you have supplied this string."</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t606" class="run"><span class="n"><a href="#t606">606</a></span><span class="t"> <span class="key">elif</span> <span class="nam">state_location</span> <span class="key">is</span> <span class="key">None</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t607" class="mis show_mis"><span class="n"><a href="#t607">607</a></span><span class="t"> <span class="key">return</span> <span class="nam">os</span><span class="op">.</span><span class="nam">path</span><span class="op">.</span><span class="nam">join</span><span class="op">(</span><span class="nam">datadir</span><span class="op">,</span> <span class="str">'demographics'</span><span class="op">,</span> <span class="str">'contact_matrices_152_countries'</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">,</span> <span class="str">'enrollment'</span><span class="op">,</span> <span class="nam">country_location</span> <span class="op">+</span> <span class="str">'_school_enrollment_by_age.dat'</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t608" class="run"><span class="n"><a href="#t608">608</a></span><span class="t"> <span class="key">elif</span> <span class="nam">location</span> <span class="key">is</span> <span class="key">None</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t609" class="mis show_mis"><span class="n"><a href="#t609">609</a></span><span class="t"> <span class="key">return</span> <span class="nam">os</span><span class="op">.</span><span class="nam">path</span><span class="op">.</span><span class="nam">join</span><span class="op">(</span><span class="nam">datadir</span><span class="op">,</span> <span class="str">'demographics'</span><span class="op">,</span> <span class="str">'contact_matrices_152_countries'</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">,</span> <span class="nam">state_location</span><span class="op">,</span> <span class="str">'enrollment'</span><span class="op">,</span> <span class="nam">state_location</span> <span class="op">+</span> <span class="str">'_school_enrollment_by_age.dat'</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t610" class="pln"><span class="n"><a href="#t610">610</a></span><span class="t"> <span class="key">else</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t611" class="run"><span class="n"><a href="#t611">611</a></span><span class="t"> <span class="key">return</span> <span class="nam">os</span><span class="op">.</span><span class="nam">path</span><span class="op">.</span><span class="nam">join</span><span class="op">(</span><span class="nam">datadir</span><span class="op">,</span> <span class="str">'demographics'</span><span class="op">,</span> <span class="str">'contact_matrices_152_countries'</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">,</span> <span class="nam">state_location</span><span class="op">,</span> <span class="str">'enrollment'</span><span class="op">,</span> <span class="nam">location</span> <span class="op">+</span> <span class="str">'_school_enrollment_by_age.dat'</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t612" class="pln"><span class="n"><a href="#t612">612</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t613" class="pln"><span class="n"><a href="#t613">613</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t614" class="run"><span class="n"><a href="#t614">614</a></span><span class="t"><span class="key">def</span> <span class="nam">get_school_enrollment_rates</span><span class="op">(</span><span class="nam">datadir</span><span class="op">,</span> <span class="nam">location</span><span class="op">=</span><span class="key">None</span><span class="op">,</span> <span class="nam">state_location</span><span class="op">=</span><span class="key">None</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">=</span><span class="key">None</span><span class="op">,</span> <span class="nam">file_path</span><span class="op">=</span><span class="key">None</span><span class="op">,</span> <span class="nam">use_default</span><span class="op">=</span><span class="key">False</span><span class="op">)</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t615" class="pln"><span class="n"><a href="#t615">615</a></span><span class="t"> <span class="str">"""</span> </span><span class="r"></span></p>
<p id="t616" class="pln"><span class="n"><a href="#t616">616</a></span><span class="t"><span class="str"> Get dictionary of enrollment rates by age. If use_default, then we'll first try to look for location specific</span> </span><span class="r"></span></p>
<p id="t617" class="pln"><span class="n"><a href="#t617">617</a></span><span class="t"><span class="str"> data and if that's not available we'll use default data from Seattle, WA. This may not be appropriate for the population</span> </span><span class="r"></span></p>
<p id="t618" class="pln"><span class="n"><a href="#t618">618</a></span><span class="t"><span class="str"> under study so it's best to provide as much data as you can for the specific population.</span> </span><span class="r"></span></p>
<p id="t619" class="pln"><span class="n"><a href="#t619">619</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t620" class="pln"><span class="n"><a href="#t620">620</a></span><span class="t"><span class="str"> Args:</span> </span><span class="r"></span></p>
<p id="t621" class="pln"><span class="n"><a href="#t621">621</a></span><span class="t"><span class="str"> datadir (string) : file path to the data directory</span> </span><span class="r"></span></p>
<p id="t622" class="pln"><span class="n"><a href="#t622">622</a></span><span class="t"><span class="str"> location (string) : name of the location</span> </span><span class="r"></span></p>
<p id="t623" class="pln"><span class="n"><a href="#t623">623</a></span><span class="t"><span class="str"> state_location (string) : name of the state the location is in</span> </span><span class="r"></span></p>
<p id="t624" class="pln"><span class="n"><a href="#t624">624</a></span><span class="t"><span class="str"> country_location (string) : name of the country the location is in</span> </span><span class="r"></span></p>
<p id="t625" class="pln"><span class="n"><a href="#t625">625</a></span><span class="t"><span class="str"> file_path (string) : file path to user specified gender by age bracket distribution data</span> </span><span class="r"></span></p>
<p id="t626" class="pln"><span class="n"><a href="#t626">626</a></span><span class="t"><span class="str"> use_default (bool) : if True, try to first use the other parameters to find data specific to the location under study, otherwise returns default data drawing from Seattle, Washington.</span> </span><span class="r"></span></p>
<p id="t627" class="pln"><span class="n"><a href="#t627">627</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t628" class="pln"><span class="n"><a href="#t628">628</a></span><span class="t"><span class="str"> Returns:</span> </span><span class="r"></span></p>
<p id="t629" class="pln"><span class="n"><a href="#t629">629</a></span><span class="t"><span class="str"> A dictionary of school enrollment rates by age.</span> </span><span class="r"></span></p>
<p id="t630" class="pln"><span class="n"><a href="#t630">630</a></span><span class="t"><span class="str"> """</span> </span><span class="r"></span></p>
<p id="t631" class="run"><span class="n"><a href="#t631">631</a></span><span class="t"> <span class="key">if</span> <span class="nam">file_path</span> <span class="key">is</span> <span class="key">None</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t632" class="run"><span class="n"><a href="#t632">632</a></span><span class="t"> <span class="nam">file_path</span> <span class="op">=</span> <span class="nam">get_school_enrollment_rates_path</span><span class="op">(</span><span class="nam">datadir</span><span class="op">,</span> <span class="nam">location</span><span class="op">,</span> <span class="nam">state_location</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t633" class="run"><span class="n"><a href="#t633">633</a></span><span class="t"> <span class="key">try</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t634" class="run"><span class="n"><a href="#t634">634</a></span><span class="t"> <span class="nam">df</span> <span class="op">=</span> <span class="nam">pd</span><span class="op">.</span><span class="nam">read_csv</span><span class="op">(</span><span class="nam">file_path</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t635" class="run"><span class="n"><a href="#t635">635</a></span><span class="t"> <span class="key">except</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t636" class="run"><span class="n"><a href="#t636">636</a></span><span class="t"> <span class="key">if</span> <span class="nam">use_default</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t637" class="run"><span class="n"><a href="#t637">637</a></span><span class="t"> <span class="nam">file_path</span> <span class="op">=</span> <span class="nam">get_school_enrollment_rates_path</span><span class="op">(</span><span class="nam">datadir</span><span class="op">,</span> <span class="nam">location</span><span class="op">=</span><span class="str">'seattle_metro'</span><span class="op">,</span> <span class="nam">state_location</span><span class="op">=</span><span class="str">'Washington'</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">=</span><span class="str">'usa'</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t638" class="run"><span class="n"><a href="#t638">638</a></span><span class="t"> <span class="nam">df</span> <span class="op">=</span> <span class="nam">pd</span><span class="op">.</span><span class="nam">read_csv</span><span class="op">(</span><span class="nam">file_path</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t639" class="pln"><span class="n"><a href="#t639">639</a></span><span class="t"> <span class="key">else</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t640" class="mis show_mis"><span class="n"><a href="#t640">640</a></span><span class="t"> <span class="key">raise</span> <span class="nam">NotImplementedError</span><span class="op">(</span><span class="str">"Data unavailable for the location specified. Please check input strings or set use_default to True to use default values from Seattle, Washington."</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t641" class="run"><span class="n"><a href="#t641">641</a></span><span class="t"> <span class="key">return</span> <span class="nam">dict</span><span class="op">(</span><span class="nam">zip</span><span class="op">(</span><span class="nam">df</span><span class="op">.</span><span class="nam">Age</span><span class="op">,</span> <span class="nam">df</span><span class="op">.</span><span class="nam">Percent</span><span class="op">)</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t642" class="pln"><span class="n"><a href="#t642">642</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t643" class="pln"><span class="n"><a href="#t643">643</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t644" class="pln"><span class="n"><a href="#t644">644</a></span><span class="t"><span class="com"># Generalized function for any location that has enrollment sizes</span> </span><span class="r"></span></p>
<p id="t645" class="pln"><span class="n"><a href="#t645">645</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t646" class="run"><span class="n"><a href="#t646">646</a></span><span class="t"><span class="key">def</span> <span class="nam">get_school_size_brackets_path</span><span class="op">(</span><span class="nam">datadir</span><span class="op">,</span> <span class="nam">location</span><span class="op">=</span><span class="key">None</span><span class="op">,</span> <span class="nam">state_location</span><span class="op">=</span><span class="key">None</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">=</span><span class="key">None</span><span class="op">)</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t647" class="pln"><span class="n"><a href="#t647">647</a></span><span class="t"> <span class="str">"""</span> </span><span class="r"></span></p>
<p id="t648" class="pln"><span class="n"><a href="#t648">648</a></span><span class="t"><span class="str"> Get file_path for school size brackets specific to the location under study.</span> </span><span class="r"></span></p>
<p id="t649" class="pln"><span class="n"><a href="#t649">649</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t650" class="pln"><span class="n"><a href="#t650">650</a></span><span class="t"><span class="str"> Args:</span> </span><span class="r"></span></p>
<p id="t651" class="pln"><span class="n"><a href="#t651">651</a></span><span class="t"><span class="str"> datadir (string) : file path to the data directory</span> </span><span class="r"></span></p>
<p id="t652" class="pln"><span class="n"><a href="#t652">652</a></span><span class="t"><span class="str"> location (string) : name of the location</span> </span><span class="r"></span></p>
<p id="t653" class="pln"><span class="n"><a href="#t653">653</a></span><span class="t"><span class="str"> state_location (string) : name of the state the location is in</span> </span><span class="r"></span></p>
<p id="t654" class="pln"><span class="n"><a href="#t654">654</a></span><span class="t"><span class="str"> country_location (string) : name of the country the location is in</span> </span><span class="r"></span></p>
<p id="t655" class="pln"><span class="n"><a href="#t655">655</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t656" class="pln"><span class="n"><a href="#t656">656</a></span><span class="t"><span class="str"> Returns:</span> </span><span class="r"></span></p>
<p id="t657" class="pln"><span class="n"><a href="#t657">657</a></span><span class="t"><span class="str"> A file path to school size brackets.</span> </span><span class="r"></span></p>
<p id="t658" class="pln"><span class="n"><a href="#t658">658</a></span><span class="t"><span class="str"> """</span> </span><span class="r"></span></p>
<p id="t659" class="run"><span class="n"><a href="#t659">659</a></span><span class="t"> <span class="nam">levels</span> <span class="op">=</span> <span class="op">[</span><span class="nam">location</span><span class="op">,</span> <span class="nam">state_location</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">]</span> </span><span class="r"></span></p>
<p id="t660" class="run"><span class="n"><a href="#t660">660</a></span><span class="t"> <span class="key">if</span> <span class="nam">all</span><span class="op">(</span><span class="nam">level</span> <span class="key">is</span> <span class="key">None</span> <span class="key">for</span> <span class="nam">level</span> <span class="key">in</span> <span class="nam">levels</span><span class="op">)</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t661" class="mis show_mis"><span class="n"><a href="#t661">661</a></span><span class="t"> <span class="key">raise</span> <span class="nam">NotImplementedError</span><span class="op">(</span><span class="str">"Missing input strings. Try again."</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t662" class="run"><span class="n"><a href="#t662">662</a></span><span class="t"> <span class="key">elif</span> <span class="nam">country_location</span> <span class="key">is</span> <span class="key">None</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t663" class="mis show_mis"><span class="n"><a href="#t663">663</a></span><span class="t"> <span class="key">raise</span> <span class="nam">NotImplementedError</span><span class="op">(</span><span class="str">"Missing country_location string. Please check that you have supplied this string."</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t664" class="run"><span class="n"><a href="#t664">664</a></span><span class="t"> <span class="key">elif</span> <span class="nam">state_location</span> <span class="key">is</span> <span class="key">None</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t665" class="mis show_mis"><span class="n"><a href="#t665">665</a></span><span class="t"> <span class="key">return</span> <span class="nam">os</span><span class="op">.</span><span class="nam">path</span><span class="op">.</span><span class="nam">join</span><span class="op">(</span><span class="nam">datadir</span><span class="op">,</span> <span class="str">'demographics'</span><span class="op">,</span> <span class="str">'contact_matrices_152_countries'</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">,</span> <span class="str">'schools'</span><span class="op">,</span> <span class="str">'school_size_brackets.dat'</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t666" class="run"><span class="n"><a href="#t666">666</a></span><span class="t"> <span class="key">elif</span> <span class="nam">location</span> <span class="key">is</span> <span class="key">None</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t667" class="mis show_mis"><span class="n"><a href="#t667">667</a></span><span class="t"> <span class="key">return</span> <span class="nam">os</span><span class="op">.</span><span class="nam">path</span><span class="op">.</span><span class="nam">join</span><span class="op">(</span><span class="nam">datadir</span><span class="op">,</span> <span class="str">'demographics'</span><span class="op">,</span> <span class="str">'contact_matrices_152_countries'</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">,</span> <span class="nam">state_location</span><span class="op">,</span> <span class="str">'schools'</span><span class="op">,</span> <span class="str">'school_size_brackets.dat'</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t668" class="pln"><span class="n"><a href="#t668">668</a></span><span class="t"> <span class="key">else</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t669" class="run"><span class="n"><a href="#t669">669</a></span><span class="t"> <span class="key">return</span> <span class="nam">os</span><span class="op">.</span><span class="nam">path</span><span class="op">.</span><span class="nam">join</span><span class="op">(</span><span class="nam">datadir</span><span class="op">,</span> <span class="str">'demographics'</span><span class="op">,</span> <span class="str">'contact_matrices_152_countries'</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">,</span> <span class="nam">state_location</span><span class="op">,</span> <span class="str">'schools'</span><span class="op">,</span> <span class="nam">location</span> <span class="op">+</span> <span class="str">'_school_size_brackets.dat'</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t670" class="pln"><span class="n"><a href="#t670">670</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t671" class="pln"><span class="n"><a href="#t671">671</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t672" class="run"><span class="n"><a href="#t672">672</a></span><span class="t"><span class="key">def</span> <span class="nam">get_school_size_brackets</span><span class="op">(</span><span class="nam">datadir</span><span class="op">,</span> <span class="nam">location</span><span class="op">=</span><span class="key">None</span><span class="op">,</span> <span class="nam">state_location</span><span class="op">=</span><span class="key">None</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">=</span><span class="key">None</span><span class="op">,</span> <span class="nam">file_path</span><span class="op">=</span><span class="key">None</span><span class="op">,</span> <span class="nam">use_default</span><span class="op">=</span><span class="key">False</span><span class="op">)</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t673" class="pln"><span class="n"><a href="#t673">673</a></span><span class="t"> <span class="str">"""</span> </span><span class="r"></span></p>
<p id="t674" class="pln"><span class="n"><a href="#t674">674</a></span><span class="t"><span class="str"> Get school size brackets: depends on the source/location of the data. If use_default, then we'll</span> </span><span class="r"></span></p>
<p id="t675" class="pln"><span class="n"><a href="#t675">675</a></span><span class="t"><span class="str"> first try to look for location specific data and if that's not available we'll use default data from Seattle, WA.</span> </span><span class="r"></span></p>
<p id="t676" class="pln"><span class="n"><a href="#t676">676</a></span><span class="t"><span class="str"> This may not be appropriate for the population under study so it's best to provide as much data as you can for the</span> </span><span class="r"></span></p>
<p id="t677" class="pln"><span class="n"><a href="#t677">677</a></span><span class="t"><span class="str"> specific population.</span> </span><span class="r"></span></p>
<p id="t678" class="pln"><span class="n"><a href="#t678">678</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t679" class="pln"><span class="n"><a href="#t679">679</a></span><span class="t"><span class="str"> Args:</span> </span><span class="r"></span></p>
<p id="t680" class="pln"><span class="n"><a href="#t680">680</a></span><span class="t"><span class="str"> datadir (string) : file path to the data directory</span> </span><span class="r"></span></p>
<p id="t681" class="pln"><span class="n"><a href="#t681">681</a></span><span class="t"><span class="str"> location (string) : name of the location</span> </span><span class="r"></span></p>
<p id="t682" class="pln"><span class="n"><a href="#t682">682</a></span><span class="t"><span class="str"> state_location (string) : name of the state the location is in</span> </span><span class="r"></span></p>
<p id="t683" class="pln"><span class="n"><a href="#t683">683</a></span><span class="t"><span class="str"> country_location (string) : name of the country the location is in</span> </span><span class="r"></span></p>
<p id="t684" class="pln"><span class="n"><a href="#t684">684</a></span><span class="t"><span class="str"> file_path (string) : file path to user specified gender by age bracket distribution data</span> </span><span class="r"></span></p>
<p id="t685" class="pln"><span class="n"><a href="#t685">685</a></span><span class="t"><span class="str"> use_default (bool) : if True, try to first use the other parameters to find data specific to the location under study, otherwise returns default data drawing from Seattle, Washington.</span> </span><span class="r"></span></p>
<p id="t686" class="pln"><span class="n"><a href="#t686">686</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t687" class="pln"><span class="n"><a href="#t687">687</a></span><span class="t"><span class="str"> Returns:</span> </span><span class="r"></span></p>
<p id="t688" class="pln"><span class="n"><a href="#t688">688</a></span><span class="t"><span class="str"> A dictionary of school size brackets.</span> </span><span class="r"></span></p>
<p id="t689" class="pln"><span class="n"><a href="#t689">689</a></span><span class="t"><span class="str"> """</span> </span><span class="r"></span></p>
<p id="t690" class="run"><span class="n"><a href="#t690">690</a></span><span class="t"> <span class="key">if</span> <span class="nam">file_path</span> <span class="key">is</span> <span class="key">None</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t691" class="run"><span class="n"><a href="#t691">691</a></span><span class="t"> <span class="nam">file_path</span> <span class="op">=</span> <span class="nam">get_school_size_brackets_path</span><span class="op">(</span><span class="nam">datadir</span><span class="op">,</span> <span class="nam">location</span><span class="op">,</span> <span class="nam">state_location</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t692" class="run"><span class="n"><a href="#t692">692</a></span><span class="t"> <span class="key">try</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t693" class="run"><span class="n"><a href="#t693">693</a></span><span class="t"> <span class="nam">school_size_brackets</span> <span class="op">=</span> <span class="nam">get_age_brackets_from_df</span><span class="op">(</span><span class="nam">file_path</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t694" class="mis show_mis"><span class="n"><a href="#t694">694</a></span><span class="t"> <span class="key">except</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t695" class="mis show_mis"><span class="n"><a href="#t695">695</a></span><span class="t"> <span class="key">if</span> <span class="nam">use_default</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t696" class="mis show_mis"><span class="n"><a href="#t696">696</a></span><span class="t"> <span class="nam">file_path</span> <span class="op">=</span> <span class="nam">get_school_size_brackets_path</span><span class="op">(</span><span class="nam">datadir</span><span class="op">,</span> <span class="nam">location</span><span class="op">=</span><span class="str">'seattle_metro'</span><span class="op">,</span> <span class="nam">state_location</span><span class="op">=</span><span class="str">'Washington'</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">=</span><span class="str">'usa'</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t697" class="mis show_mis"><span class="n"><a href="#t697">697</a></span><span class="t"> <span class="nam">school_size_brackets</span> <span class="op">=</span> <span class="nam">get_age_brackets_from_df</span><span class="op">(</span><span class="nam">file_path</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t698" class="pln"><span class="n"><a href="#t698">698</a></span><span class="t"> <span class="key">else</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t699" class="mis show_mis"><span class="n"><a href="#t699">699</a></span><span class="t"> <span class="key">raise</span> <span class="nam">NotImplementedError</span><span class="op">(</span><span class="str">"Data unavailable for the location specified. Please check input strings or set use_default to True to use default values from Seattle, Washington."</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t700" class="run"><span class="n"><a href="#t700">700</a></span><span class="t"> <span class="key">return</span> <span class="nam">school_size_brackets</span> </span><span class="r"></span></p>
<p id="t701" class="pln"><span class="n"><a href="#t701">701</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t702" class="pln"><span class="n"><a href="#t702">702</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t703" class="run"><span class="n"><a href="#t703">703</a></span><span class="t"><span class="key">def</span> <span class="nam">get_school_sizes_path</span><span class="op">(</span><span class="nam">datadir</span><span class="op">,</span> <span class="nam">location</span><span class="op">=</span><span class="key">None</span><span class="op">,</span> <span class="nam">state_location</span><span class="op">=</span><span class="key">None</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">=</span><span class="key">None</span><span class="op">)</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t704" class="pln"><span class="n"><a href="#t704">704</a></span><span class="t"> <span class="str">"""</span> </span><span class="r"></span></p>
<p id="t705" class="pln"><span class="n"><a href="#t705">705</a></span><span class="t"><span class="str"> Get file_path for school sizes specific to the location under study.</span> </span><span class="r"></span></p>
<p id="t706" class="pln"><span class="n"><a href="#t706">706</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t707" class="pln"><span class="n"><a href="#t707">707</a></span><span class="t"><span class="str"> Args:</span> </span><span class="r"></span></p>
<p id="t708" class="pln"><span class="n"><a href="#t708">708</a></span><span class="t"><span class="str"> datadir (string) : file path to the data directory</span> </span><span class="r"></span></p>
<p id="t709" class="pln"><span class="n"><a href="#t709">709</a></span><span class="t"><span class="str"> location (string) : name of the location</span> </span><span class="r"></span></p>
<p id="t710" class="pln"><span class="n"><a href="#t710">710</a></span><span class="t"><span class="str"> state_location (string) : name of the state the location is in</span> </span><span class="r"></span></p>
<p id="t711" class="pln"><span class="n"><a href="#t711">711</a></span><span class="t"><span class="str"> country_location (string) : name of the country the location is in</span> </span><span class="r"></span></p>
<p id="t712" class="pln"><span class="n"><a href="#t712">712</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t713" class="pln"><span class="n"><a href="#t713">713</a></span><span class="t"><span class="str"> Returns:</span> </span><span class="r"></span></p>
<p id="t714" class="pln"><span class="n"><a href="#t714">714</a></span><span class="t"><span class="str"> A file path to school sizes.</span> </span><span class="r"></span></p>
<p id="t715" class="pln"><span class="n"><a href="#t715">715</a></span><span class="t"><span class="str"> """</span> </span><span class="r"></span></p>
<p id="t716" class="pln"><span class="n"><a href="#t716">716</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t717" class="run"><span class="n"><a href="#t717">717</a></span><span class="t"> <span class="nam">levels</span> <span class="op">=</span> <span class="op">[</span><span class="nam">location</span><span class="op">,</span> <span class="nam">state_location</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">]</span> </span><span class="r"></span></p>
<p id="t718" class="run"><span class="n"><a href="#t718">718</a></span><span class="t"> <span class="key">if</span> <span class="nam">all</span><span class="op">(</span><span class="nam">level</span> <span class="key">is</span> <span class="key">None</span> <span class="key">for</span> <span class="nam">level</span> <span class="key">in</span> <span class="nam">levels</span><span class="op">)</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t719" class="mis show_mis"><span class="n"><a href="#t719">719</a></span><span class="t"> <span class="key">raise</span> <span class="nam">NotImplementedError</span><span class="op">(</span><span class="str">"Missing input strings. Try again."</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t720" class="run"><span class="n"><a href="#t720">720</a></span><span class="t"> <span class="key">elif</span> <span class="nam">country_location</span> <span class="key">is</span> <span class="key">None</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t721" class="mis show_mis"><span class="n"><a href="#t721">721</a></span><span class="t"> <span class="key">raise</span> <span class="nam">NotImplementedError</span><span class="op">(</span><span class="str">"Missing country_location string. Please check that you have supplied this string."</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t722" class="run"><span class="n"><a href="#t722">722</a></span><span class="t"> <span class="key">elif</span> <span class="nam">state_location</span> <span class="key">is</span> <span class="key">None</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t723" class="mis show_mis"><span class="n"><a href="#t723">723</a></span><span class="t"> <span class="key">return</span> <span class="nam">os</span><span class="op">.</span><span class="nam">path</span><span class="op">.</span><span class="nam">join</span><span class="op">(</span><span class="nam">datadir</span><span class="op">,</span> <span class="str">'demographics'</span><span class="op">,</span> <span class="str">'contact_matrices_152_countries'</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">,</span> <span class="str">'schools'</span><span class="op">,</span> <span class="str">'school_sizes.dat'</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t724" class="run"><span class="n"><a href="#t724">724</a></span><span class="t"> <span class="key">elif</span> <span class="nam">location</span> <span class="key">is</span> <span class="key">None</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t725" class="mis show_mis"><span class="n"><a href="#t725">725</a></span><span class="t"> <span class="key">return</span> <span class="nam">os</span><span class="op">.</span><span class="nam">path</span><span class="op">.</span><span class="nam">join</span><span class="op">(</span><span class="nam">datadir</span><span class="op">,</span> <span class="str">'demographics'</span><span class="op">,</span> <span class="str">'contact_matrices_152_countries'</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">,</span> <span class="nam">state_location</span><span class="op">,</span> <span class="str">'schools'</span><span class="op">,</span> <span class="str">'school_sizes.dat'</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t726" class="pln"><span class="n"><a href="#t726">726</a></span><span class="t"> <span class="key">else</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t727" class="run"><span class="n"><a href="#t727">727</a></span><span class="t"> <span class="key">return</span> <span class="nam">os</span><span class="op">.</span><span class="nam">path</span><span class="op">.</span><span class="nam">join</span><span class="op">(</span><span class="nam">datadir</span><span class="op">,</span> <span class="str">'demographics'</span><span class="op">,</span> <span class="str">'contact_matrices_152_countries'</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">,</span> <span class="nam">state_location</span><span class="op">,</span> <span class="str">'schools'</span><span class="op">,</span> <span class="nam">location</span> <span class="op">+</span> <span class="str">'_school_sizes.dat'</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t728" class="pln"><span class="n"><a href="#t728">728</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t729" class="pln"><span class="n"><a href="#t729">729</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t730" class="run"><span class="n"><a href="#t730">730</a></span><span class="t"><span class="key">def</span> <span class="nam">get_school_sizes_df</span><span class="op">(</span><span class="nam">datadir</span><span class="op">,</span> <span class="nam">location</span><span class="op">=</span><span class="key">None</span><span class="op">,</span> <span class="nam">state_location</span><span class="op">=</span><span class="key">None</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">=</span><span class="key">None</span><span class="op">,</span> <span class="nam">file_path</span><span class="op">=</span><span class="key">None</span><span class="op">,</span> <span class="nam">use_default</span><span class="op">=</span><span class="key">False</span><span class="op">)</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t731" class="pln"><span class="n"><a href="#t731">731</a></span><span class="t"> <span class="str">"""</span> </span><span class="r"></span></p>
<p id="t732" class="pln"><span class="n"><a href="#t732">732</a></span><span class="t"><span class="str"> Get pandas dataframe with school enrollment sizes: depends on the country or source of contact pattern data. If use_default, then we'll first</span> </span><span class="r"></span></p>
<p id="t733" class="pln"><span class="n"><a href="#t733">733</a></span><span class="t"><span class="str"> try to look for location specific data and if that's not available we'll use default data from Seattle, WA. This may not</span> </span><span class="r"></span></p>
<p id="t734" class="pln"><span class="n"><a href="#t734">734</a></span><span class="t"><span class="str"> be appropriate for the population under study so it's best to provide as much data as you can for the specific population.</span> </span><span class="r"></span></p>
<p id="t735" class="pln"><span class="n"><a href="#t735">735</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t736" class="pln"><span class="n"><a href="#t736">736</a></span><span class="t"><span class="str"> Args:</span> </span><span class="r"></span></p>
<p id="t737" class="pln"><span class="n"><a href="#t737">737</a></span><span class="t"><span class="str"> datadir (string) : file path to the data directory</span> </span><span class="r"></span></p>
<p id="t738" class="pln"><span class="n"><a href="#t738">738</a></span><span class="t"><span class="str"> location (string) : name of the location</span> </span><span class="r"></span></p>
<p id="t739" class="pln"><span class="n"><a href="#t739">739</a></span><span class="t"><span class="str"> state_location (string) : name of the state the location is in</span> </span><span class="r"></span></p>
<p id="t740" class="pln"><span class="n"><a href="#t740">740</a></span><span class="t"><span class="str"> country_location (string) : name of the country the location is in</span> </span><span class="r"></span></p>
<p id="t741" class="pln"><span class="n"><a href="#t741">741</a></span><span class="t"><span class="str"> file_path (string) : file path to user specified gender by age bracket distribution data</span> </span><span class="r"></span></p>
<p id="t742" class="pln"><span class="n"><a href="#t742">742</a></span><span class="t"><span class="str"> use_default (bool) : if True, try to first use the other parameters to find data specific to the location under study, otherwise returns default data drawing from Seattle, Washington.</span> </span><span class="r"></span></p>
<p id="t743" class="pln"><span class="n"><a href="#t743">743</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t744" class="pln"><span class="n"><a href="#t744">744</a></span><span class="t"><span class="str"> Returns:</span> </span><span class="r"></span></p>
<p id="t745" class="pln"><span class="n"><a href="#t745">745</a></span><span class="t"><span class="str"> A pandas dataframe with school sizes.</span> </span><span class="r"></span></p>
<p id="t746" class="pln"><span class="n"><a href="#t746">746</a></span><span class="t"><span class="str"> """</span> </span><span class="r"></span></p>
<p id="t747" class="run"><span class="n"><a href="#t747">747</a></span><span class="t"> <span class="key">if</span> <span class="nam">file_path</span> <span class="key">is</span> <span class="key">None</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t748" class="run"><span class="n"><a href="#t748">748</a></span><span class="t"> <span class="nam">file_path</span> <span class="op">=</span> <span class="nam">get_school_sizes_path</span><span class="op">(</span><span class="nam">datadir</span><span class="op">,</span> <span class="nam">location</span><span class="op">,</span> <span class="nam">state_location</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t749" class="run"><span class="n"><a href="#t749">749</a></span><span class="t"> <span class="key">try</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t750" class="run"><span class="n"><a href="#t750">750</a></span><span class="t"> <span class="nam">df</span> <span class="op">=</span> <span class="nam">pd</span><span class="op">.</span><span class="nam">read_csv</span><span class="op">(</span><span class="nam">file_path</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t751" class="mis show_mis"><span class="n"><a href="#t751">751</a></span><span class="t"> <span class="key">except</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t752" class="mis show_mis"><span class="n"><a href="#t752">752</a></span><span class="t"> <span class="key">if</span> <span class="nam">use_default</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t753" class="mis show_mis"><span class="n"><a href="#t753">753</a></span><span class="t"> <span class="nam">file_path</span> <span class="op">=</span> <span class="nam">get_school_sizes_path</span><span class="op">(</span><span class="nam">datadir</span><span class="op">,</span> <span class="nam">location</span><span class="op">=</span><span class="str">'seattle_metro'</span><span class="op">,</span> <span class="nam">state_location</span><span class="op">=</span><span class="str">'Washington'</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">=</span><span class="str">'usa'</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t754" class="mis show_mis"><span class="n"><a href="#t754">754</a></span><span class="t"> <span class="nam">df</span> <span class="op">=</span> <span class="nam">pd</span><span class="op">.</span><span class="nam">read_csv</span><span class="op">(</span><span class="nam">file_path</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t755" class="pln"><span class="n"><a href="#t755">755</a></span><span class="t"> <span class="key">else</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t756" class="mis show_mis"><span class="n"><a href="#t756">756</a></span><span class="t"> <span class="key">raise</span> <span class="nam">NotImplementedError</span><span class="op">(</span><span class="str">"Data unavailable for the location specified. Please check input strings or set use_default to True to use default values from Seattle, Washington."</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t757" class="run"><span class="n"><a href="#t757">757</a></span><span class="t"> <span class="key">return</span> <span class="nam">df</span> </span><span class="r"></span></p>
<p id="t758" class="pln"><span class="n"><a href="#t758">758</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t759" class="pln"><span class="n"><a href="#t759">759</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t760" class="run"><span class="n"><a href="#t760">760</a></span><span class="t"><span class="key">def</span> <span class="nam">get_school_size_distr_by_brackets_path</span><span class="op">(</span><span class="nam">datadir</span><span class="op">,</span> <span class="nam">location</span><span class="op">=</span><span class="key">None</span><span class="op">,</span> <span class="nam">state_location</span><span class="op">=</span><span class="key">None</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">=</span><span class="key">None</span><span class="op">)</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t761" class="pln"><span class="n"><a href="#t761">761</a></span><span class="t"> <span class="str">"""</span> </span><span class="r"></span></p>
<p id="t762" class="pln"><span class="n"><a href="#t762">762</a></span><span class="t"><span class="str"> Get file_path for the distribution of school size by brackets.</span> </span><span class="r"></span></p>
<p id="t763" class="pln"><span class="n"><a href="#t763">763</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t764" class="pln"><span class="n"><a href="#t764">764</a></span><span class="t"><span class="str"> Args:</span> </span><span class="r"></span></p>
<p id="t765" class="pln"><span class="n"><a href="#t765">765</a></span><span class="t"><span class="str"> datadir (string) : file path to the data directory</span> </span><span class="r"></span></p>
<p id="t766" class="pln"><span class="n"><a href="#t766">766</a></span><span class="t"><span class="str"> location (string) : name of the location</span> </span><span class="r"></span></p>
<p id="t767" class="pln"><span class="n"><a href="#t767">767</a></span><span class="t"><span class="str"> state_location (string) : name of the state the location is in</span> </span><span class="r"></span></p>
<p id="t768" class="pln"><span class="n"><a href="#t768">768</a></span><span class="t"><span class="str"> country_location (string) : name of the country the location is in</span> </span><span class="r"></span></p>
<p id="t769" class="pln"><span class="n"><a href="#t769">769</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t770" class="pln"><span class="n"><a href="#t770">770</a></span><span class="t"><span class="str"> Returns:</span> </span><span class="r"></span></p>
<p id="t771" class="pln"><span class="n"><a href="#t771">771</a></span><span class="t"><span class="str"> A file path to the distribution of school sizes by bracket.</span> </span><span class="r"></span></p>
<p id="t772" class="pln"><span class="n"><a href="#t772">772</a></span><span class="t"><span class="str"> """</span> </span><span class="r"></span></p>
<p id="t773" class="pln"><span class="n"><a href="#t773">773</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t774" class="run"><span class="n"><a href="#t774">774</a></span><span class="t"> <span class="nam">levels</span> <span class="op">=</span> <span class="op">[</span><span class="nam">location</span><span class="op">,</span> <span class="nam">state_location</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">]</span> </span><span class="r"></span></p>
<p id="t775" class="run"><span class="n"><a href="#t775">775</a></span><span class="t"> <span class="key">if</span> <span class="nam">all</span><span class="op">(</span><span class="nam">level</span> <span class="key">is</span> <span class="key">None</span> <span class="key">for</span> <span class="nam">level</span> <span class="key">in</span> <span class="nam">levels</span><span class="op">)</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t776" class="mis show_mis"><span class="n"><a href="#t776">776</a></span><span class="t"> <span class="key">raise</span> <span class="nam">NotImplementedError</span><span class="op">(</span><span class="str">"Missing input strings. Try again."</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t777" class="run"><span class="n"><a href="#t777">777</a></span><span class="t"> <span class="key">elif</span> <span class="nam">country_location</span> <span class="key">is</span> <span class="key">None</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t778" class="mis show_mis"><span class="n"><a href="#t778">778</a></span><span class="t"> <span class="key">raise</span> <span class="nam">NotImplementedError</span><span class="op">(</span><span class="str">"Missing country_location string. Please check that you have supplied this string."</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t779" class="run"><span class="n"><a href="#t779">779</a></span><span class="t"> <span class="key">elif</span> <span class="nam">state_location</span> <span class="key">is</span> <span class="key">None</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t780" class="mis show_mis"><span class="n"><a href="#t780">780</a></span><span class="t"> <span class="key">return</span> <span class="nam">os</span><span class="op">.</span><span class="nam">path</span><span class="op">.</span><span class="nam">join</span><span class="op">(</span><span class="nam">datadir</span><span class="op">,</span> <span class="str">'demographics'</span><span class="op">,</span> <span class="str">'contact_matrices_152_countries'</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">,</span> <span class="str">'schools'</span><span class="op">,</span> <span class="str">'school_size_distr.dat'</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t781" class="run"><span class="n"><a href="#t781">781</a></span><span class="t"> <span class="key">elif</span> <span class="nam">location</span> <span class="key">is</span> <span class="key">None</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t782" class="mis show_mis"><span class="n"><a href="#t782">782</a></span><span class="t"> <span class="key">return</span> <span class="nam">os</span><span class="op">.</span><span class="nam">path</span><span class="op">.</span><span class="nam">join</span><span class="op">(</span><span class="nam">datadir</span><span class="op">,</span> <span class="str">'demographics'</span><span class="op">,</span> <span class="str">'contact_matrices_152_countries'</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">,</span> <span class="nam">state_location</span><span class="op">,</span> <span class="str">'schools'</span><span class="op">,</span> <span class="str">'school_size_distr.dat'</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t783" class="pln"><span class="n"><a href="#t783">783</a></span><span class="t"> <span class="key">else</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t784" class="run"><span class="n"><a href="#t784">784</a></span><span class="t"> <span class="key">return</span> <span class="nam">os</span><span class="op">.</span><span class="nam">path</span><span class="op">.</span><span class="nam">join</span><span class="op">(</span><span class="nam">datadir</span><span class="op">,</span> <span class="str">'demographics'</span><span class="op">,</span> <span class="str">'contact_matrices_152_countries'</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">,</span> <span class="nam">state_location</span><span class="op">,</span> <span class="str">'schools'</span><span class="op">,</span> <span class="nam">location</span> <span class="op">+</span> <span class="str">'_school_size_distr.dat'</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t785" class="pln"><span class="n"><a href="#t785">785</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t786" class="pln"><span class="n"><a href="#t786">786</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t787" class="run"><span class="n"><a href="#t787">787</a></span><span class="t"><span class="key">def</span> <span class="nam">get_school_size_distr_by_brackets</span><span class="op">(</span><span class="nam">datadir</span><span class="op">,</span> <span class="nam">location</span><span class="op">=</span><span class="key">None</span><span class="op">,</span> <span class="nam">state_location</span><span class="op">=</span><span class="key">None</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">=</span><span class="key">None</span><span class="op">,</span> <span class="nam">counts_available</span><span class="op">=</span><span class="key">False</span><span class="op">,</span> <span class="nam">file_path</span><span class="op">=</span><span class="key">None</span><span class="op">,</span> <span class="nam">use_default</span><span class="op">=</span><span class="key">False</span><span class="op">)</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t788" class="pln"><span class="n"><a href="#t788">788</a></span><span class="t"> <span class="str">"""</span> </span><span class="r"></span></p>
<p id="t789" class="pln"><span class="n"><a href="#t789">789</a></span><span class="t"><span class="str"> Get distribution of school sizes by bracket. Either you have enrollments by individual school or you have school size distribution that is binned. Either way, you want to get a school size distribution.</span> </span><span class="r"></span></p>
<p id="t790" class="pln"><span class="n"><a href="#t790">790</a></span><span class="t"><span class="str"> If use_default, then we'll first try to look for location specific data and if that's not available we'll use default data from Seattle, WA. This may not</span> </span><span class="r"></span></p>
<p id="t791" class="pln"><span class="n"><a href="#t791">791</a></span><span class="t"><span class="str"> be appropriate for the population under study so it's best to provide as much data as you can for the specific population.</span> </span><span class="r"></span></p>
<p id="t792" class="pln"><span class="n"><a href="#t792">792</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t793" class="pln"><span class="n"><a href="#t793">793</a></span><span class="t"><span class="str"> Args:</span> </span><span class="r"></span></p>
<p id="t794" class="pln"><span class="n"><a href="#t794">794</a></span><span class="t"><span class="str"> datadir (string) : file path to the data directory</span> </span><span class="r"></span></p>
<p id="t795" class="pln"><span class="n"><a href="#t795">795</a></span><span class="t"><span class="str"> location (string) : name of the location</span> </span><span class="r"></span></p>
<p id="t796" class="pln"><span class="n"><a href="#t796">796</a></span><span class="t"><span class="str"> state_location (string) : name of the state the location is in</span> </span><span class="r"></span></p>
<p id="t797" class="pln"><span class="n"><a href="#t797">797</a></span><span class="t"><span class="str"> country_location (string) : name of the country the location is in</span> </span><span class="r"></span></p>
<p id="t798" class="pln"><span class="n"><a href="#t798">798</a></span><span class="t"><span class="str"> counts_available (bool) : if True, a list of school sizes is available and a count of the sizes can be constructed</span> </span><span class="r"></span></p>
<p id="t799" class="pln"><span class="n"><a href="#t799">799</a></span><span class="t"><span class="str"> file_path (string) : file path to user specified distribution data</span> </span><span class="r"></span></p>
<p id="t800" class="pln"><span class="n"><a href="#t800">800</a></span><span class="t"><span class="str"> use_default (bool) : if True, try to first use the other parameters to find data specific to the location under study, otherwise returns default data drawing from Seattle, Washington.</span> </span><span class="r"></span></p>
<p id="t801" class="pln"><span class="n"><a href="#t801">801</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t802" class="pln"><span class="n"><a href="#t802">802</a></span><span class="t"><span class="str"> Returns:</span> </span><span class="r"></span></p>
<p id="t803" class="pln"><span class="n"><a href="#t803">803</a></span><span class="t"><span class="str"> A dictionary of the distribution of school sizes by bracket.</span> </span><span class="r"></span></p>
<p id="t804" class="pln"><span class="n"><a href="#t804">804</a></span><span class="t"><span class="str"> """</span> </span><span class="r"></span></p>
<p id="t805" class="pln"><span class="n"><a href="#t805">805</a></span><span class="t"> <span class="com"># create size distribution from enrollment counts</span> </span><span class="r"></span></p>
<p id="t806" class="run"><span class="n"><a href="#t806">806</a></span><span class="t"> <span class="key">if</span> <span class="nam">counts_available</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t807" class="run"><span class="n"><a href="#t807">807</a></span><span class="t"> <span class="key">try</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t808" class="run"><span class="n"><a href="#t808">808</a></span><span class="t"> <span class="nam">df</span> <span class="op">=</span> <span class="nam">get_school_sizes_df</span><span class="op">(</span><span class="nam">datadir</span><span class="op">,</span> <span class="nam">location</span><span class="op">,</span> <span class="nam">state_location</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t809" class="mis show_mis"><span class="n"><a href="#t809">809</a></span><span class="t"> <span class="key">except</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t810" class="mis show_mis"><span class="n"><a href="#t810">810</a></span><span class="t"> <span class="key">if</span> <span class="nam">use_default</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t811" class="mis show_mis"><span class="n"><a href="#t811">811</a></span><span class="t"> <span class="nam">df</span> <span class="op">=</span> <span class="nam">get_school_sizes_df</span><span class="op">(</span><span class="nam">datadir</span><span class="op">,</span> <span class="nam">use_default</span><span class="op">=</span><span class="nam">use_default</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t812" class="pln"><span class="n"><a href="#t812">812</a></span><span class="t"> <span class="key">else</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t813" class="mis show_mis"><span class="n"><a href="#t813">813</a></span><span class="t"> <span class="key">raise</span> <span class="nam">NotImplementedError</span><span class="op">(</span><span class="str">"Data unavailable for the location specified. Please check input strings or set use_default to True to use default values from Seattle, Washington."</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t814" class="run"><span class="n"><a href="#t814">814</a></span><span class="t"> <span class="nam">sizes</span> <span class="op">=</span> <span class="nam">df</span><span class="op">.</span><span class="nam">iloc</span><span class="op">[</span><span class="op">:</span><span class="op">,</span> <span class="num">0</span><span class="op">]</span><span class="op">.</span><span class="nam">values</span> </span><span class="r"></span></p>
<p id="t815" class="run"><span class="n"><a href="#t815">815</a></span><span class="t"> <span class="nam">size_count</span> <span class="op">=</span> <span class="nam">Counter</span><span class="op">(</span><span class="nam">sizes</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t816" class="pln"><span class="n"><a href="#t816">816</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t817" class="run"><span class="n"><a href="#t817">817</a></span><span class="t"> <span class="nam">size_brackets</span> <span class="op">=</span> <span class="nam">get_school_size_brackets</span><span class="op">(</span><span class="nam">datadir</span><span class="op">,</span> <span class="nam">location</span><span class="op">,</span> <span class="nam">state_location</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">)</span> <span class="com"># add option to give input filenames!</span> </span><span class="r"></span></p>
<p id="t818" class="run"><span class="n"><a href="#t818">818</a></span><span class="t"> <span class="nam">size_by_bracket_dic</span> <span class="op">=</span> <span class="nam">spb</span><span class="op">.</span><span class="nam">get_age_by_brackets_dic</span><span class="op">(</span><span class="nam">size_brackets</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t819" class="pln"><span class="n"><a href="#t819">819</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t820" class="run"><span class="n"><a href="#t820">820</a></span><span class="t"> <span class="nam">bracket_count</span> <span class="op">=</span> <span class="nam">dict</span><span class="op">.</span><span class="nam">fromkeys</span><span class="op">(</span><span class="nam">np</span><span class="op">.</span><span class="nam">arange</span><span class="op">(</span><span class="nam">len</span><span class="op">(</span><span class="nam">size_brackets</span><span class="op">)</span><span class="op">)</span><span class="op">,</span> <span class="num">0</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t821" class="pln"><span class="n"><a href="#t821">821</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t822" class="pln"><span class="n"><a href="#t822">822</a></span><span class="t"> <span class="com"># aggregate the counts by bracket or bins</span> </span><span class="r"></span></p>
<p id="t823" class="run"><span class="n"><a href="#t823">823</a></span><span class="t"> <span class="key">for</span> <span class="nam">s</span> <span class="key">in</span> <span class="nam">size_count</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t824" class="run"><span class="n"><a href="#t824">824</a></span><span class="t"> <span class="nam">b</span> <span class="op">=</span> <span class="nam">size_by_bracket_dic</span><span class="op">[</span><span class="nam">s</span><span class="op">]</span> </span><span class="r"></span></p>
<p id="t825" class="run"><span class="n"><a href="#t825">825</a></span><span class="t"> <span class="nam">bracket_count</span><span class="op">[</span><span class="nam">b</span><span class="op">]</span> <span class="op">+=</span> <span class="nam">size_count</span><span class="op">[</span><span class="nam">s</span><span class="op">]</span> </span><span class="r"></span></p>
<p id="t826" class="pln"><span class="n"><a href="#t826">826</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t827" class="run"><span class="n"><a href="#t827">827</a></span><span class="t"> <span class="nam">size_distr</span> <span class="op">=</span> <span class="nam">spb</span><span class="op">.</span><span class="nam">norm_dic</span><span class="op">(</span><span class="nam">bracket_count</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t828" class="pln"><span class="n"><a href="#t828">828</a></span><span class="t"> <span class="com"># read in size distribution from data file</span> </span><span class="r"></span></p>
<p id="t829" class="pln"><span class="n"><a href="#t829">829</a></span><span class="t"> <span class="key">else</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t830" class="run"><span class="n"><a href="#t830">830</a></span><span class="t"> <span class="key">if</span> <span class="nam">file_path</span> <span class="key">is</span> <span class="key">None</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t831" class="run"><span class="n"><a href="#t831">831</a></span><span class="t"> <span class="nam">file_path</span> <span class="op">=</span> <span class="nam">get_school_size_distr_by_brackets_path</span><span class="op">(</span><span class="nam">datadir</span><span class="op">,</span> <span class="nam">location</span><span class="op">,</span> <span class="nam">state_location</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t832" class="run"><span class="n"><a href="#t832">832</a></span><span class="t"> <span class="key">try</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t833" class="run"><span class="n"><a href="#t833">833</a></span><span class="t"> <span class="nam">df</span> <span class="op">=</span> <span class="nam">pd</span><span class="op">.</span><span class="nam">read_csv</span><span class="op">(</span><span class="nam">file_path</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t834" class="mis show_mis"><span class="n"><a href="#t834">834</a></span><span class="t"> <span class="key">except</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t835" class="mis show_mis"><span class="n"><a href="#t835">835</a></span><span class="t"> <span class="key">if</span> <span class="nam">use_default</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t836" class="mis show_mis"><span class="n"><a href="#t836">836</a></span><span class="t"> <span class="nam">file_path</span> <span class="op">=</span> <span class="nam">get_school_size_distr_by_brackets_path</span><span class="op">(</span><span class="nam">datadir</span><span class="op">,</span> <span class="nam">location</span><span class="op">=</span><span class="str">'seattle_metro'</span><span class="op">,</span> <span class="nam">state_location</span><span class="op">=</span><span class="str">'Washington'</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">=</span><span class="str">'usa'</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t837" class="mis show_mis"><span class="n"><a href="#t837">837</a></span><span class="t"> <span class="nam">df</span> <span class="op">=</span> <span class="nam">pd</span><span class="op">.</span><span class="nam">read_csv</span><span class="op">(</span><span class="nam">file_path</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t838" class="pln"><span class="n"><a href="#t838">838</a></span><span class="t"> <span class="key">else</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t839" class="mis show_mis"><span class="n"><a href="#t839">839</a></span><span class="t"> <span class="key">raise</span> <span class="nam">NotImplementedError</span><span class="op">(</span><span class="str">"Data unavailable for the location specified. Please check input strings or set use_default to True to use default values from Seattle, Washington."</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t840" class="run"><span class="n"><a href="#t840">840</a></span><span class="t"> <span class="nam">size_distr</span> <span class="op">=</span> <span class="nam">dict</span><span class="op">(</span><span class="nam">zip</span><span class="op">(</span><span class="nam">df</span><span class="op">.</span><span class="nam">size_bracket</span><span class="op">,</span> <span class="nam">df</span><span class="op">.</span><span class="nam">percent</span><span class="op">)</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t841" class="run"><span class="n"><a href="#t841">841</a></span><span class="t"> <span class="nam">size_distr</span> <span class="op">=</span> <span class="nam">spb</span><span class="op">.</span><span class="nam">norm_dic</span><span class="op">(</span><span class="nam">size_distr</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t842" class="pln"><span class="n"><a href="#t842">842</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t843" class="run"><span class="n"><a href="#t843">843</a></span><span class="t"> <span class="key">return</span> <span class="nam">size_distr</span> </span><span class="r"></span></p>
<p id="t844" class="pln"><span class="n"><a href="#t844">844</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t845" class="pln"><span class="n"><a href="#t845">845</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t846" class="run"><span class="n"><a href="#t846">846</a></span><span class="t"><span class="key">def</span> <span class="nam">write_school_size_distr_by_brackets</span><span class="op">(</span><span class="nam">datadir</span><span class="op">,</span> <span class="nam">location</span><span class="op">=</span><span class="key">None</span><span class="op">,</span> <span class="nam">state_location</span><span class="op">=</span><span class="key">None</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">=</span><span class="key">None</span><span class="op">,</span> <span class="nam">counts_available</span><span class="op">=</span><span class="key">True</span><span class="op">)</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t847" class="pln"><span class="n"><a href="#t847">847</a></span><span class="t"> <span class="str">"""</span> </span><span class="r"></span></p>
<p id="t848" class="pln"><span class="n"><a href="#t848">848</a></span><span class="t"><span class="str"> Write school size distribution by brackets to file.</span> </span><span class="r"></span></p>
<p id="t849" class="pln"><span class="n"><a href="#t849">849</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t850" class="pln"><span class="n"><a href="#t850">850</a></span><span class="t"><span class="str"> Args:</span> </span><span class="r"></span></p>
<p id="t851" class="pln"><span class="n"><a href="#t851">851</a></span><span class="t"><span class="str"> datadir (string) : file path to the data directory</span> </span><span class="r"></span></p>
<p id="t852" class="pln"><span class="n"><a href="#t852">852</a></span><span class="t"><span class="str"> location (string) : name of the location</span> </span><span class="r"></span></p>
<p id="t853" class="pln"><span class="n"><a href="#t853">853</a></span><span class="t"><span class="str"> state_location (string) : name of the state the location is in</span> </span><span class="r"></span></p>
<p id="t854" class="pln"><span class="n"><a href="#t854">854</a></span><span class="t"><span class="str"> country_location (string) : name of the country the location is in</span> </span><span class="r"></span></p>
<p id="t855" class="pln"><span class="n"><a href="#t855">855</a></span><span class="t"><span class="str"> counts_available (bool) : if True, a list of school sizes is available and a count of the sizes can be constructed</span> </span><span class="r"></span></p>
<p id="t856" class="pln"><span class="n"><a href="#t856">856</a></span><span class="t"><span class="str"> use_default (bool) : if True, try to first use the other parameters to find data specific to the location under study, otherwise returns default data drawing from Seattle, Washington.</span> </span><span class="r"></span></p>
<p id="t857" class="pln"><span class="n"><a href="#t857">857</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t858" class="pln"><span class="n"><a href="#t858">858</a></span><span class="t"><span class="str"> Returns:</span> </span><span class="r"></span></p>
<p id="t859" class="pln"><span class="n"><a href="#t859">859</a></span><span class="t"><span class="str"> A dictionary of the distribution of school sizes by bracket.</span> </span><span class="r"></span></p>
<p id="t860" class="pln"><span class="n"><a href="#t860">860</a></span><span class="t"><span class="str"> """</span> </span><span class="r"></span></p>
<p id="t861" class="pln"><span class="n"><a href="#t861">861</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t862" class="mis show_mis"><span class="n"><a href="#t862">862</a></span><span class="t"> <span class="nam">size_distr</span> <span class="op">=</span> <span class="nam">get_school_size_distr_by_brackets</span><span class="op">(</span><span class="nam">datadir</span><span class="op">,</span> <span class="nam">location</span><span class="op">=</span><span class="nam">location</span><span class="op">,</span> <span class="nam">state_location</span><span class="op">=</span><span class="nam">state_location</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">=</span><span class="nam">country_location</span><span class="op">,</span> <span class="nam">counts_available</span><span class="op">=</span><span class="nam">counts_available</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t863" class="mis show_mis"><span class="n"><a href="#t863">863</a></span><span class="t"> <span class="nam">sorted_keys</span> <span class="op">=</span> <span class="nam">sorted</span><span class="op">(</span><span class="nam">size_distr</span><span class="op">.</span><span class="nam">keys</span><span class="op">(</span><span class="op">)</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t864" class="pln"><span class="n"><a href="#t864">864</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t865" class="mis show_mis"><span class="n"><a href="#t865">865</a></span><span class="t"> <span class="nam">levels</span> <span class="op">=</span> <span class="op">[</span><span class="nam">location</span><span class="op">,</span> <span class="nam">state_location</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">]</span> </span><span class="r"></span></p>
<p id="t866" class="mis show_mis"><span class="n"><a href="#t866">866</a></span><span class="t"> <span class="key">if</span> <span class="nam">all</span><span class="op">(</span><span class="nam">level</span> <span class="key">is</span> <span class="key">None</span> <span class="key">for</span> <span class="nam">level</span> <span class="key">in</span> <span class="nam">levels</span><span class="op">)</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t867" class="mis show_mis"><span class="n"><a href="#t867">867</a></span><span class="t"> <span class="key">raise</span> <span class="nam">NotImplementedError</span><span class="op">(</span><span class="str">"Missing input strings. Try again."</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t868" class="mis show_mis"><span class="n"><a href="#t868">868</a></span><span class="t"> <span class="key">if</span> <span class="nam">country_location</span> <span class="key">is</span> <span class="key">None</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t869" class="mis show_mis"><span class="n"><a href="#t869">869</a></span><span class="t"> <span class="key">raise</span> <span class="nam">NotImplementedError</span><span class="op">(</span><span class="str">"Missing country_location string. Please check that you have supplied this string."</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t870" class="mis show_mis"><span class="n"><a href="#t870">870</a></span><span class="t"> <span class="key">elif</span> <span class="nam">state_location</span> <span class="key">is</span> <span class="key">None</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t871" class="mis show_mis"><span class="n"><a href="#t871">871</a></span><span class="t"> <span class="nam">file_path</span> <span class="op">=</span> <span class="nam">os</span><span class="op">.</span><span class="nam">path</span><span class="op">.</span><span class="nam">join</span><span class="op">(</span><span class="nam">datadir</span><span class="op">,</span> <span class="str">'demographics'</span><span class="op">,</span> <span class="str">'contact_matrices_152_countries'</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">,</span> <span class="str">'schools'</span><span class="op">,</span> <span class="str">'school_size_distr.dat'</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t872" class="mis show_mis"><span class="n"><a href="#t872">872</a></span><span class="t"> <span class="key">elif</span> <span class="nam">location</span> <span class="key">is</span> <span class="key">None</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t873" class="mis show_mis"><span class="n"><a href="#t873">873</a></span><span class="t"> <span class="nam">file_path</span> <span class="op">=</span> <span class="nam">os</span><span class="op">.</span><span class="nam">path</span><span class="op">.</span><span class="nam">join</span><span class="op">(</span><span class="nam">datadir</span><span class="op">,</span> <span class="str">'demographics'</span><span class="op">,</span> <span class="str">'contact_matrices_152_countries'</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">,</span> <span class="nam">state_location</span><span class="op">,</span> <span class="str">'schools'</span><span class="op">,</span> <span class="str">'school_size_distr.dat'</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t874" class="pln"><span class="n"><a href="#t874">874</a></span><span class="t"> <span class="key">else</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t875" class="mis show_mis"><span class="n"><a href="#t875">875</a></span><span class="t"> <span class="nam">file_path</span> <span class="op">=</span> <span class="nam">os</span><span class="op">.</span><span class="nam">path</span><span class="op">.</span><span class="nam">join</span><span class="op">(</span><span class="nam">datadir</span><span class="op">,</span> <span class="str">'demographics'</span><span class="op">,</span> <span class="str">'contact_matrices_152_countries'</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">,</span> <span class="nam">state_location</span><span class="op">,</span> <span class="str">'schools'</span><span class="op">,</span> <span class="nam">location</span> <span class="op">+</span> <span class="str">'_school_size_distr.dat'</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t876" class="pln"><span class="n"><a href="#t876">876</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t877" class="mis show_mis"><span class="n"><a href="#t877">877</a></span><span class="t"> <span class="nam">f</span> <span class="op">=</span> <span class="nam">open</span><span class="op">(</span><span class="nam">file_path</span><span class="op">,</span> <span class="str">'w'</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t878" class="mis show_mis"><span class="n"><a href="#t878">878</a></span><span class="t"> <span class="nam">f</span><span class="op">.</span><span class="nam">write</span><span class="op">(</span><span class="str">'size_bracket,percent\n'</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t879" class="mis show_mis"><span class="n"><a href="#t879">879</a></span><span class="t"> <span class="key">for</span> <span class="nam">k</span> <span class="key">in</span> <span class="nam">sorted_keys</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t880" class="mis show_mis"><span class="n"><a href="#t880">880</a></span><span class="t"> <span class="nam">f</span><span class="op">.</span><span class="nam">write</span><span class="op">(</span><span class="nam">str</span><span class="op">(</span><span class="nam">k</span><span class="op">)</span> <span class="op">+</span> <span class="str">','</span> <span class="op">+</span> <span class="nam">str</span><span class="op">(</span><span class="nam">size_distr</span><span class="op">[</span><span class="nam">k</span><span class="op">]</span><span class="op">)</span> <span class="op">+</span> <span class="str">'\n'</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t881" class="mis show_mis"><span class="n"><a href="#t881">881</a></span><span class="t"> <span class="nam">f</span><span class="op">.</span><span class="nam">close</span><span class="op">(</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t882" class="pln"><span class="n"><a href="#t882">882</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t883" class="pln"><span class="n"><a href="#t883">883</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t884" class="pln"><span class="n"><a href="#t884">884</a></span><span class="t"><span class="com"># binning school sizes for Seattle</span> </span><span class="r"></span></p>
<p id="t885" class="run"><span class="n"><a href="#t885">885</a></span><span class="t"><span class="key">def</span> <span class="nam">get_usa_school_sizes_by_bracket</span><span class="op">(</span><span class="nam">datadir</span><span class="op">,</span> <span class="nam">location</span><span class="op">,</span> <span class="nam">state_location</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">)</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t886" class="pln"><span class="n"><a href="#t886">886</a></span><span class="t"> <span class="str">"""</span> </span><span class="r"></span></p>
<p id="t887" class="pln"><span class="n"><a href="#t887">887</a></span><span class="t"><span class="str"> Get distribution of school sizes by bracket specifically for the US.</span> </span><span class="r"></span></p>
<p id="t888" class="pln"><span class="n"><a href="#t888">888</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t889" class="pln"><span class="n"><a href="#t889">889</a></span><span class="t"><span class="str"> Args:</span> </span><span class="r"></span></p>
<p id="t890" class="pln"><span class="n"><a href="#t890">890</a></span><span class="t"><span class="str"> datadir (string) : file path to the data directory</span> </span><span class="r"></span></p>
<p id="t891" class="pln"><span class="n"><a href="#t891">891</a></span><span class="t"><span class="str"> location (string) : name of the location</span> </span><span class="r"></span></p>
<p id="t892" class="pln"><span class="n"><a href="#t892">892</a></span><span class="t"><span class="str"> state_location (string) : name of the state the location is in</span> </span><span class="r"></span></p>
<p id="t893" class="pln"><span class="n"><a href="#t893">893</a></span><span class="t"><span class="str"> country_location (string) : name of the country the location is in, which should be the 'usa'</span> </span><span class="r"></span></p>
<p id="t894" class="pln"><span class="n"><a href="#t894">894</a></span><span class="t"><span class="str"> size_distr_file_path (string) : file path to user specified gender by age bracket distribution data</span> </span><span class="r"></span></p>
<p id="t895" class="pln"><span class="n"><a href="#t895">895</a></span><span class="t"><span class="str"> use_default (bool) : if True, try to first use the other parameters to find data specific to the location under study, otherwise returns default data drawing from Seattle, Washington.</span> </span><span class="r"></span></p>
<p id="t896" class="pln"><span class="n"><a href="#t896">896</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t897" class="pln"><span class="n"><a href="#t897">897</a></span><span class="t"><span class="str"> Returns:</span> </span><span class="r"></span></p>
<p id="t898" class="pln"><span class="n"><a href="#t898">898</a></span><span class="t"><span class="str"> A dictionary of the distribution of school sizes by bracket.</span> </span><span class="r"></span></p>
<p id="t899" class="pln"><span class="n"><a href="#t899">899</a></span><span class="t"><span class="str"> """</span> </span><span class="r"></span></p>
<p id="t900" class="mis show_mis"><span class="n"><a href="#t900">900</a></span><span class="t"> <span class="nam">df</span> <span class="op">=</span> <span class="nam">get_school_sizes_df</span><span class="op">(</span><span class="nam">datadir</span><span class="op">,</span> <span class="nam">location</span><span class="op">,</span> <span class="nam">state_location</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t901" class="mis show_mis"><span class="n"><a href="#t901">901</a></span><span class="t"> <span class="nam">sizes</span> <span class="op">=</span> <span class="nam">df</span><span class="op">.</span><span class="nam">iloc</span><span class="op">[</span><span class="op">:</span><span class="op">,</span> <span class="num">0</span><span class="op">]</span><span class="op">.</span><span class="nam">values</span> </span><span class="r"></span></p>
<p id="t902" class="mis show_mis"><span class="n"><a href="#t902">902</a></span><span class="t"> <span class="nam">size_count</span> <span class="op">=</span> <span class="nam">Counter</span><span class="op">(</span><span class="nam">sizes</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t903" class="pln"><span class="n"><a href="#t903">903</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t904" class="mis show_mis"><span class="n"><a href="#t904">904</a></span><span class="t"> <span class="nam">size_brackets</span> <span class="op">=</span> <span class="nam">get_school_size_brackets</span><span class="op">(</span><span class="nam">datadir</span><span class="op">,</span> <span class="nam">location</span><span class="op">,</span> <span class="nam">state_location</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t905" class="mis show_mis"><span class="n"><a href="#t905">905</a></span><span class="t"> <span class="nam">size_by_bracket_dic</span> <span class="op">=</span> <span class="nam">spb</span><span class="op">.</span><span class="nam">get_age_by_brackets_dic</span><span class="op">(</span><span class="nam">size_brackets</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t906" class="pln"><span class="n"><a href="#t906">906</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t907" class="mis show_mis"><span class="n"><a href="#t907">907</a></span><span class="t"> <span class="nam">bracket_count</span> <span class="op">=</span> <span class="nam">dict</span><span class="op">.</span><span class="nam">fromkeys</span><span class="op">(</span><span class="nam">np</span><span class="op">.</span><span class="nam">arange</span><span class="op">(</span><span class="nam">len</span><span class="op">(</span><span class="nam">size_brackets</span><span class="op">)</span><span class="op">)</span><span class="op">,</span> <span class="num">0</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t908" class="pln"><span class="n"><a href="#t908">908</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t909" class="mis show_mis"><span class="n"><a href="#t909">909</a></span><span class="t"> <span class="key">for</span> <span class="nam">s</span> <span class="key">in</span> <span class="nam">size_count</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t910" class="mis show_mis"><span class="n"><a href="#t910">910</a></span><span class="t"> <span class="nam">bracket_count</span><span class="op">[</span><span class="nam">size_by_bracket_dic</span><span class="op">[</span><span class="nam">s</span><span class="op">]</span><span class="op">]</span> <span class="op">+=</span> <span class="nam">size_count</span><span class="op">[</span><span class="nam">s</span><span class="op">]</span> </span><span class="r"></span></p>
<p id="t911" class="pln"><span class="n"><a href="#t911">911</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t912" class="mis show_mis"><span class="n"><a href="#t912">912</a></span><span class="t"> <span class="nam">count_by_mean</span> <span class="op">=</span> <span class="op">{</span><span class="op">}</span> </span><span class="r"></span></p>
<p id="t913" class="pln"><span class="n"><a href="#t913">913</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t914" class="mis show_mis"><span class="n"><a href="#t914">914</a></span><span class="t"> <span class="key">for</span> <span class="nam">b</span> <span class="key">in</span> <span class="nam">bracket_count</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t915" class="mis show_mis"><span class="n"><a href="#t915">915</a></span><span class="t"> <span class="nam">size</span> <span class="op">=</span> <span class="nam">int</span><span class="op">(</span><span class="nam">np</span><span class="op">.</span><span class="nam">mean</span><span class="op">(</span><span class="nam">size_brackets</span><span class="op">[</span><span class="nam">b</span><span class="op">]</span><span class="op">)</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t916" class="mis show_mis"><span class="n"><a href="#t916">916</a></span><span class="t"> <span class="nam">count_by_mean</span><span class="op">[</span><span class="nam">size</span><span class="op">]</span> <span class="op">=</span> <span class="nam">bracket_count</span><span class="op">[</span><span class="nam">b</span><span class="op">]</span> </span><span class="r"></span></p>
<p id="t917" class="pln"><span class="n"><a href="#t917">917</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t918" class="mis show_mis"><span class="n"><a href="#t918">918</a></span><span class="t"> <span class="key">return</span> <span class="nam">count_by_mean</span> </span><span class="r"></span></p>
<p id="t919" class="pln"><span class="n"><a href="#t919">919</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t920" class="pln"><span class="n"><a href="#t920">920</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t921" class="run"><span class="n"><a href="#t921">921</a></span><span class="t"><span class="key">def</span> <span class="nam">get_employment_rates_path</span><span class="op">(</span><span class="nam">datadir</span><span class="op">,</span> <span class="nam">location</span><span class="op">=</span><span class="key">None</span><span class="op">,</span> <span class="nam">state_location</span><span class="op">=</span><span class="key">None</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">=</span><span class="key">None</span><span class="op">)</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t922" class="pln"><span class="n"><a href="#t922">922</a></span><span class="t"> <span class="str">"""</span> </span><span class="r"></span></p>
<p id="t923" class="pln"><span class="n"><a href="#t923">923</a></span><span class="t"><span class="str"> Get file_path for employment rates by age.</span> </span><span class="r"></span></p>
<p id="t924" class="pln"><span class="n"><a href="#t924">924</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t925" class="pln"><span class="n"><a href="#t925">925</a></span><span class="t"><span class="str"> Args:</span> </span><span class="r"></span></p>
<p id="t926" class="pln"><span class="n"><a href="#t926">926</a></span><span class="t"><span class="str"> datadir (string) : file path to the data directory</span> </span><span class="r"></span></p>
<p id="t927" class="pln"><span class="n"><a href="#t927">927</a></span><span class="t"><span class="str"> location (string) : name of the location</span> </span><span class="r"></span></p>
<p id="t928" class="pln"><span class="n"><a href="#t928">928</a></span><span class="t"><span class="str"> state_location (string) : name of the state the location is in</span> </span><span class="r"></span></p>
<p id="t929" class="pln"><span class="n"><a href="#t929">929</a></span><span class="t"><span class="str"> country_location (string) : name of the country the location is in</span> </span><span class="r"></span></p>
<p id="t930" class="pln"><span class="n"><a href="#t930">930</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t931" class="pln"><span class="n"><a href="#t931">931</a></span><span class="t"><span class="str"> Returns:</span> </span><span class="r"></span></p>
<p id="t932" class="pln"><span class="n"><a href="#t932">932</a></span><span class="t"><span class="str"> A file path to employment rates by age.</span> </span><span class="r"></span></p>
<p id="t933" class="pln"><span class="n"><a href="#t933">933</a></span><span class="t"><span class="str"> """</span> </span><span class="r"></span></p>
<p id="t934" class="run"><span class="n"><a href="#t934">934</a></span><span class="t"> <span class="nam">levels</span> <span class="op">=</span> <span class="op">[</span><span class="nam">location</span><span class="op">,</span> <span class="nam">state_location</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">]</span> </span><span class="r"></span></p>
<p id="t935" class="run"><span class="n"><a href="#t935">935</a></span><span class="t"> <span class="key">if</span> <span class="nam">all</span><span class="op">(</span><span class="nam">level</span> <span class="key">is</span> <span class="key">None</span> <span class="key">for</span> <span class="nam">level</span> <span class="key">in</span> <span class="nam">levels</span><span class="op">)</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t936" class="mis show_mis"><span class="n"><a href="#t936">936</a></span><span class="t"> <span class="key">raise</span> <span class="nam">NotImplementedError</span><span class="op">(</span><span class="str">"Missing input strings. Try again."</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t937" class="run"><span class="n"><a href="#t937">937</a></span><span class="t"> <span class="key">elif</span> <span class="nam">country_location</span> <span class="key">is</span> <span class="key">None</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t938" class="mis show_mis"><span class="n"><a href="#t938">938</a></span><span class="t"> <span class="key">raise</span> <span class="nam">NotImplementedError</span><span class="op">(</span><span class="str">"Missing country_location string. Please check that you have supplied this string."</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t939" class="run"><span class="n"><a href="#t939">939</a></span><span class="t"> <span class="key">elif</span> <span class="nam">state_location</span> <span class="key">is</span> <span class="key">None</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t940" class="mis show_mis"><span class="n"><a href="#t940">940</a></span><span class="t"> <span class="key">return</span> <span class="nam">os</span><span class="op">.</span><span class="nam">path</span><span class="op">.</span><span class="nam">join</span><span class="op">(</span><span class="nam">datadir</span><span class="op">,</span> <span class="str">'demographics'</span><span class="op">,</span> <span class="str">'contact_matrices_152_countries'</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">,</span> <span class="str">'employment'</span><span class="op">,</span> <span class="str">'employment_rates_by_age.dat'</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t941" class="run"><span class="n"><a href="#t941">941</a></span><span class="t"> <span class="key">elif</span> <span class="nam">location</span> <span class="key">is</span> <span class="key">None</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t942" class="mis show_mis"><span class="n"><a href="#t942">942</a></span><span class="t"> <span class="key">return</span> <span class="nam">os</span><span class="op">.</span><span class="nam">path</span><span class="op">.</span><span class="nam">join</span><span class="op">(</span><span class="nam">datadir</span><span class="op">,</span> <span class="str">'demographics'</span><span class="op">,</span> <span class="str">'contact_matrices_152_countries'</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">,</span> <span class="nam">state_location</span><span class="op">,</span> <span class="str">'employment'</span><span class="op">,</span> <span class="str">'employment_rates_by_age.dat'</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t943" class="pln"><span class="n"><a href="#t943">943</a></span><span class="t"> <span class="key">else</span><span class="op">:</span> </span><span class="r"></span></p>
<p id="t944" class="run"><span class="n"><a href="#t944">944</a></span><span class="t"> <span class="key">return</span> <span class="nam">os</span><span class="op">.</span><span class="nam">path</span><span class="op">.</span><span class="nam">join</span><span class="op">(</span><span class="nam">datadir</span><span class="op">,</span> <span class="str">'demographics'</span><span class="op">,</span> <span class="str">'contact_matrices_152_countries'</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">,</span> <span class="nam">state_location</span><span class="op">,</span> <span class="str">'employment'</span><span class="op">,</span> <span class="nam">location</span> <span class="op">+</span> <span class="str">'_employment_rates_by_age.dat'</span><span class="op">)</span> </span><span class="r"></span></p>
<p id="t945" class="pln"><span class="n"><a href="#t945">945</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t946" class="pln"><span class="n"><a href="#t946">946</a></span><span class="t"> </span><span class="r"></span></p>
<p id="t947" class="run"><span class="n"><a href="#t947">947</a></span><span class="t"><span class="key">def</span> <span class="nam">get_employment_rates</span><span class="op">(</span><span class="nam">datadir</span><span class="op">,</span> <span class="nam">location</span><span class="op">,</span> <span class="nam">state_location</span><span class="op">,</span> <span class="nam">country_location</span><span class="op">,</span> <span class="nam">file_path</span><span class="op">=</span><span class="key">None</span><span class="op">,</span> <span class="nam">use_default</span><span class="op">=</span><span class="key">False</span><span class="op">)</span><span class="op">:</span> </span><span class="r"></span></p>