README.md

Environments

This directory contains the necessary files to create the conda environments.

We have the following environments:

• scDINO.yaml: Environment for running scDINO
• timelapse_env.yaml: Environment for running the timelapse analysis
• R_env.yaml: Environment for running the R scripts

Creating the environments

To create the environments, execute the following command:

conda env create -f scDINO.yaml
conda env create -f timelapse_env.yaml
conda env create -f R_env.yaml

The environments will be activated when each shell script is run.