diff --git a/data/modules/vg/Example1.vgstats b/data/modules/vg/Example1.vgstats new file mode 100644 index 00000000..52eae604 --- /dev/null +++ b/data/modules/vg/Example1.vgstats @@ -0,0 +1,16 @@ +Total alignments: 729236214 +Total primary: 729236214 +Total secondary: 0 +Total aligned: 721047578 +Total perfect: 357674895 +Total gapless (softclips allowed): 715967271 +Total paired: 729236214 +Total properly paired: 718683476 +Alignment score: mean 142.001, median 156, stdev 29.1807, max 161 (357674895 reads) +Mapping quality: mean 53.1302, median 60, stdev 17.6347, max 60 (603414249 reads) +Insertions: 6533534 bp in 2282841 read events +Deletions: 10519502 bp in 4179720 read events +Substitutions: 490824539 bp in 490824539 read events +Softclips: 10030341073 bp in 232993653 read events +Total time: 315875 seconds +Speed: 2308.62 reads/second diff --git a/data/modules/vg/Example2.vgstats b/data/modules/vg/Example2.vgstats new file mode 100644 index 00000000..2faeb399 --- /dev/null +++ b/data/modules/vg/Example2.vgstats @@ -0,0 +1,16 @@ +Total alignments: 786889820 +Total primary: 786889820 +Total secondary: 0 +Total aligned: 777651532 +Total perfect: 382250293 +Total gapless (softclips allowed): 772411557 +Total paired: 786889820 +Total properly paired: 774424970 +Alignment score: mean 141.081, median 156, stdev 30.4529, max 161 (382250293 reads) +Mapping quality: mean 52.9098, median 60, stdev 17.7611, max 60 (643610302 reads) +Insertions: 6503589 bp in 2310323 read events +Deletions: 10842444 bp in 4336335 read events +Substitutions: 544551412 bp in 544551412 read events +Softclips: 11476128752 bp in 248401284 read events +Total time: 771240 seconds +Speed: 1020.29 reads/second diff --git a/data/modules/vg/Example3.vgstats b/data/modules/vg/Example3.vgstats new file mode 100644 index 00000000..5498871a --- /dev/null +++ b/data/modules/vg/Example3.vgstats @@ -0,0 +1,16 @@ +Total alignments: 739258320 +Total primary: 739258320 +Total secondary: 0 +Total aligned: 729017724 +Total perfect: 251306095 +Total gapless (softclips allowed): 724990210 +Total paired: 739258320 +Total properly paired: 725827578 +Alignment score: mean 130.776, median 142, stdev 33.5437, max 161 (251306095 reads) +Mapping quality: mean 52.1781, median 60, stdev 18.2659, max 60 (582452618 reads) +Insertions: 5044236 bp in 1811571 read events +Deletions: 7921323 bp in 3216687 read events +Substitutions: 410262341 bp in 410262341 read events +Softclips: 18040474418 bp in 380727161 read events +Total time: 242513 seconds +Speed: 3048.32 reads/second diff --git a/data/modules/vg/Example4.vgstats b/data/modules/vg/Example4.vgstats new file mode 100644 index 00000000..b3aab9fc --- /dev/null +++ b/data/modules/vg/Example4.vgstats @@ -0,0 +1,16 @@ +Total alignments: 730548654 +Total primary: 730548654 +Total secondary: 0 +Total aligned: 721307398 +Total perfect: 386672125 +Total gapless (softclips allowed): 717664852 +Total paired: 730548654 +Total properly paired: 718768480 +Alignment score: mean 128.009, median 127, stdev 31.1766, max 161 (233234730 reads) +Mapping quality: mean 52.6357, median 60, stdev 18.0368, max 60 (589508652 reads) +Insertions: 4426348 bp in 1586522 read events +Deletions: 7453493 bp in 2949472 read events +Substitutions: 286626521 bp in 286626521 read events +Softclips: 10771990278 bp in 243191179 read events +Total time: 329860 seconds +Speed: 2214.72 reads/second diff --git a/data/modules/vg/Example5.vgstats b/data/modules/vg/Example5.vgstats new file mode 100644 index 00000000..2999214e --- /dev/null +++ b/data/modules/vg/Example5.vgstats @@ -0,0 +1,16 @@ +Total alignments: 664591582 +Total primary: 664591582 +Total secondary: 0 +Total aligned: 655979478 +Total perfect: 363516082 +Total gapless (softclips allowed): 652860524 +Total paired: 664591582 +Total properly paired: 654215568 +Alignment score: mean 126.901, median 120, stdev 30.9958, max 161 (206026986 reads) +Mapping quality: mean 53.2774, median 60, stdev 17.3, max 60 (544260913 reads) +Insertions: 3526767 bp in 1328111 read events +Deletions: 6021632 bp in 2530401 read events +Substitutions: 233700838 bp in 233700838 read events +Softclips: 9414144709 bp in 214751192 read events +Total time: 244311 seconds +Speed: 2720.27 reads/second diff --git a/data/modules/vg/Example6.vgstats b/data/modules/vg/Example6.vgstats new file mode 100644 index 00000000..14cb7b8b --- /dev/null +++ b/data/modules/vg/Example6.vgstats @@ -0,0 +1,16 @@ +Total alignments: 692190260 +Total primary: 692190260 +Total secondary: 0 +Total aligned: 682558448 +Total perfect: 342923792 +Total gapless (softclips allowed): 679220872 +Total paired: 692190260 +Total properly paired: 680099028 +Alignment score: mean 125.714, median 121, stdev 31.9556, max 161 (204203139 reads) +Mapping quality: mean 52.374, median 60, stdev 18.2084, max 60 (550224357 reads) +Insertions: 4040508 bp in 1436180 read events +Deletions: 6791516 bp in 2698121 read events +Substitutions: 262736438 bp in 262736438 read events +Softclips: 11863306621 bp in 258005799 read events +Total time: 252920 seconds +Speed: 2736.8 reads/second