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NUOPC Cap Improvements #1645

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Description

This pull requests maintains the cap by cleaning up the code for better maintainability and enhancements. Enhancements were made to the documentation, the import and export state initialization, and the import state checking

Resolves #1644

Testcase

Uses NASA Land Coupler for testing
https://github.com/esmf-org/NASA-Land-Coupler/tree/feature/lisf_upgrade

bit-for-bit results for coupled tuolumne cases

SUCCESS: coupled_tuolumne.ens020.noahmp_v4.0.1_da.nldas2 LIS_HIST_201403020000.d01.nc
SUCCESS: coupled_tuolumne.ens020.noahmp_v4.0.1_da.nldas2 LIS_HIST_201403030000.d01.nc
SUCCESS: coupled_tuolumne.noahmp.nldas2 LIS_HIST_201510020000.d01.nc
SUCCESS: coupled_tuolumne.noahmp.nldas2 LIS_HIST_201510030000.d01.nc

* add README file and guides
* update documentation using Doxygen
* add gnu/intel debug options for BUILD_TYPE=DEBUG
* update missing field value to 9.99e20
* add initialization options for import and export states
* add missing value check (disable with MISSINGVAL_SKPCPY or MISSINGVAL_IGNORE)
* call lisfinalize during cap finalize
* move configuration options to LIS_NUOPC_Flags.F90
@danrosen25
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danrosen25 commented Nov 26, 2024

@jvgeiger @dmocko @emkemp
Hi all,
I'm submitting updates to the NUOPC coupling interface (NUOPC Cap). It's going to come in a few separate different pull requests to isolate the changes. This first change is NUOPC cap only changes. I ran testing in a coupled configuration but it will need some offline regression tests.

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Cleanup NUOPC Cap for LIS
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