diff --git a/processing_code/01knit-RMD-2-MD_NDSRepo.R b/processing_code/01knit-RMD-2-MD_NDSRepo.R index 0e9c7193..d60d799a 100644 --- a/processing_code/01knit-RMD-2-MD_NDSRepo.R +++ b/processing_code/01knit-RMD-2-MD_NDSRepo.R @@ -30,7 +30,7 @@ dirs <- c("R/NEON-general/neon-overview/NEON-download-explore", # set directory (order above) that you'd like to build -subDir <- dirs[10] +subDir <- dirs[11] # Inputs - Where the git repo is on your computer gitRepoPath <-"~/GitHub/NEON-Data-Skills" diff --git a/tutorials/Other/Concept-intros/test_tabs_fragment/test_code_tabs_fragment.R b/tutorials/Other/Concept-intros/test_tabs_fragment/test_code_tabs_fragment.R index 780c70dd..7d24c2fb 100644 --- a/tutorials/Other/Concept-intros/test_tabs_fragment/test_code_tabs_fragment.R +++ b/tutorials/Other/Concept-intros/test_tabs_fragment/test_code_tabs_fragment.R @@ -6,6 +6,6 @@ library(htmltools) ## ----html, echo=FALSE, warning=FALSE, message=FALSE---------------------------------------------------------- -htmltools::includeHTML("https://github.com/cklunch/NEON-Data-Skills/blob/main/tutorials-in-development/Other/test_code_tabs_fragment.html") +htmltools::includeHTML("https://raw.githubusercontent.com/NEONScience/NEON-Data-Skills/main/tutorials-in-development/Other/test_code_tabs_fragment.html") diff --git a/tutorials/Other/Concept-intros/test_tabs_fragment/test_code_tabs_fragment.Rmd b/tutorials/Other/Concept-intros/test_tabs_fragment/test_code_tabs_fragment.Rmd index 73f4028c..3108a62b 100644 --- a/tutorials/Other/Concept-intros/test_tabs_fragment/test_code_tabs_fragment.Rmd +++ b/tutorials/Other/Concept-intros/test_tabs_fragment/test_code_tabs_fragment.Rmd @@ -24,7 +24,7 @@ library(htmltools) ```{r html, echo=FALSE, warning=FALSE, message=FALSE} -htmltools::includeHTML("https://github.com/cklunch/NEON-Data-Skills/blob/main/tutorials-in-development/Other/test_code_tabs_fragment.html") +htmltools::includeHTML("https://raw.githubusercontent.com/NEONScience/NEON-Data-Skills/main/tutorials-in-development/Other/test_code_tabs_fragment.html") ``` diff --git a/tutorials/Other/Concept-intros/test_tabs_fragment/test_code_tabs_fragment.html b/tutorials/Other/Concept-intros/test_tabs_fragment/test_code_tabs_fragment.html index ff4f4ff2..11f50e86 100644 --- a/tutorials/Other/Concept-intros/test_tabs_fragment/test_code_tabs_fragment.html +++ b/tutorials/Other/Concept-intros/test_tabs_fragment/test_code_tabs_fragment.html @@ -81,1424 +81,30 @@
- -data-color-mode=“auto” data-light-theme=“light” data-dark-theme=“dark” -data-a11y-animated-images=“system” data-a11y-link-underlines=“true”

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## '@misc{https://doi.org/10.48443/fdfd-d514,\n  doi = {10.48443/FDFD-D514},\n  url = {https://data.neonscience.org/data-products/DP1.20093.001/RELEASE-2024},\n  author = {{National Ecological Observatory Network (NEON)}},\n  keywords = {chemistry, water quality, anions, cations, alkalinity, nutrients, surface water, nitrogen (N), carbon (C), total carbon (TC), acid neutralizing capacity (ANC), analytes, grab samples, chemical properties, swc, phosphorus (P)},\n  language = {en},\n  title = {Chemical properties of surface water (DP1.20093.001)},\n  publisher = {National Ecological Observatory Network (NEON)},\n  year = {2024},\n  copyright = {Creative Commons Zero v1.0 Universal}\n}\n'
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    - - - + diff --git a/tutorials/Other/Concept-intros/test_tabs_fragment/test_code_tabs_fragment.md b/tutorials/Other/Concept-intros/test_tabs_fragment/test_code_tabs_fragment.md index 9ad63865..006984cd 100644 --- a/tutorials/Other/Concept-intros/test_tabs_fragment/test_code_tabs_fragment.md +++ b/tutorials/Other/Concept-intros/test_tabs_fragment/test_code_tabs_fragment.md @@ -21,1680 +21,28 @@ urlTitle: test-code-tabs-fragment - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - NEON-Data-Skills/tutorials-in-development/Other/test_code_tabs_fragment.html at main · cklunch/NEON-Data-Skills · GitHub - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
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    +

    Load neonUtilities or neonutilities package

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    R

    +
    library(neonUtilities)
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    Python

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    import neonutilities as nu
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    Get a citation

    +
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    R

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    getCitation(dpID='DP1.20093.001', release='RELEASE-2024')
    +
    ## [1] "@misc{https://doi.org/10.48443/fdfd-d514,\n  doi = {10.48443/FDFD-D514},\n  url = {https://data.neonscience.org/data-products/DP1.20093.001/RELEASE-2024},\n  author = {{National Ecological Observatory Network (NEON)}},\n  keywords = {chemistry, water quality, anions, cations, alkalinity, nutrients, surface water, nitrogen (N), carbon (C), total carbon (TC), acid neutralizing capacity (ANC), analytes, grab samples, chemical properties, swc, phosphorus (P)},\n  language = {en},\n  title = {Chemical properties of surface water (DP1.20093.001)},\n  publisher = {National Ecological Observatory Network (NEON)},\n  year = {2024},\n  copyright = {Creative Commons Zero v1.0 Universal}\n}\n"
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    +

    Python

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    nu.get_citation(dpID='DP1.20093.001', release='RELEASE-2024')
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    ## '@misc{https://doi.org/10.48443/fdfd-d514,\n  doi = {10.48443/FDFD-D514},\n  url = {https://data.neonscience.org/data-products/DP1.20093.001/RELEASE-2024},\n  author = {{National Ecological Observatory Network (NEON)}},\n  keywords = {chemistry, water quality, anions, cations, alkalinity, nutrients, surface water, nitrogen (N), carbon (C), total carbon (TC), acid neutralizing capacity (ANC), analytes, grab samples, chemical properties, swc, phosphorus (P)},\n  language = {en},\n  title = {Chemical properties of surface water (DP1.20093.001)},\n  publisher = {National Ecological Observatory Network (NEON)},\n  year = {2024},\n  copyright = {Creative Commons Zero v1.0 Universal}\n}\n'
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    diff --git a/tutorials/Other/Concept-intros/test_tabs_full_doc/test_code_tabs_document.R b/tutorials/Other/Concept-intros/test_tabs_full_doc/test_code_tabs_document.R index 6da8d665..fd4d2869 100644 --- a/tutorials/Other/Concept-intros/test_tabs_full_doc/test_code_tabs_document.R +++ b/tutorials/Other/Concept-intros/test_tabs_full_doc/test_code_tabs_document.R @@ -6,6 +6,6 @@ library(htmltools) ## ----html, echo=FALSE, warning=FALSE, message=FALSE---------------------------------------------------------- -htmltools::includeHTML("https://github.com/cklunch/NEON-Data-Skills/blob/main/tutorials-in-development/Other/test_code_tabs.html") +htmltools::includeHTML("https://raw.githubusercontent.com/NEONScience/NEON-Data-Skills/main/tutorials-in-development/Other/test_code_tabs.html") diff --git a/tutorials/Other/Concept-intros/test_tabs_full_doc/test_code_tabs_document.Rmd b/tutorials/Other/Concept-intros/test_tabs_full_doc/test_code_tabs_document.Rmd index ddcb626f..958f03ca 100644 --- a/tutorials/Other/Concept-intros/test_tabs_full_doc/test_code_tabs_document.Rmd +++ b/tutorials/Other/Concept-intros/test_tabs_full_doc/test_code_tabs_document.Rmd @@ -24,7 +24,7 @@ library(htmltools) ```{r html, echo=FALSE, warning=FALSE, message=FALSE} -htmltools::includeHTML("https://github.com/cklunch/NEON-Data-Skills/blob/main/tutorials-in-development/Other/test_code_tabs.html") +htmltools::includeHTML("https://raw.githubusercontent.com/NEONScience/NEON-Data-Skills/main/tutorials-in-development/Other/test_code_tabs.html") ``` diff --git a/tutorials/Other/Concept-intros/test_tabs_full_doc/test_code_tabs_document.html b/tutorials/Other/Concept-intros/test_tabs_full_doc/test_code_tabs_document.html index 47d587ba..f56dc812 100644 --- a/tutorials/Other/Concept-intros/test_tabs_full_doc/test_code_tabs_document.html +++ b/tutorials/Other/Concept-intros/test_tabs_full_doc/test_code_tabs_document.html @@ -81,1427 +81,380 @@

    - - -data-color-mode=“auto” data-light-theme=“light” data-dark-theme=“dark” -data-a11y-animated-images=“system” data-a11y-link-underlines=“true”

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    <button id="icon-button-da0655e3-81a9-44c5-b1d4-16cae4d2aa02" aria-labelledby="tooltip-91e16c5a-8991-448e-a2a8-e05235344903" type="button" data-view-component="true" class="Button Button--iconOnly Button--invisible Button--medium flash-close js-flash-close">  <svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-x Button-visual">
    -<path d="M3.72 3.72a.75.75 0 0 1 1.06 0L8 6.94l3.22-3.22a.749.749 0 0 1 1.275.326.749.749 0 0 1-.215.734L9.06 8l3.22 3.22a.749.749 0 0 1-.326 1.275.749.749 0 0 1-.734-.215L8 9.06l-3.22 3.22a.751.751 0 0 1-1.042-.018.751.751 0 0 1-.018-1.042L6.94 8 3.72 4.78a.75.75 0 0 1 0-1.06Z"></path>
    -
    - -Dismiss alert +
    +

    Python

    +
    import neonutilities as nu
    -
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    <div id="js-flash-container" class="flash-container" data-turbo-replace>
    -
    - +
    +

    Get a citation

    +
    +

    R

    +
    getCitation(dpID='DP1.20093.001', release='RELEASE-2024')
    +
    ## [1] "@misc{https://doi.org/10.48443/fdfd-d514,\n  doi = {10.48443/FDFD-D514},\n  url = {https://data.neonscience.org/data-products/DP1.20093.001/RELEASE-2024},\n  author = {{National Ecological Observatory Network (NEON)}},\n  keywords = {chemistry, water quality, anions, cations, alkalinity, nutrients, surface water, nitrogen (N), carbon (C), total carbon (TC), acid neutralizing capacity (ANC), analytes, grab samples, chemical properties, swc, phosphorus (P)},\n  language = {en},\n  title = {Chemical properties of surface water (DP1.20093.001)},\n  publisher = {National Ecological Observatory Network (NEON)},\n  year = {2024},\n  copyright = {Creative Commons Zero v1.0 Universal}\n}\n"
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      <div class="d-flex flex-nowrap flex-justify-end mb-3  px-3 px-lg-5" style="gap: 1rem;">
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    <span class="author flex-self-stretch" itemprop="author">
    -  <a class="url fn" rel="author" data-hovercard-type="user" data-hovercard-url="/users/cklunch/hovercard" data-octo-click="hovercard-link-click" data-octo-dimensions="link_type:self" href="/cklunch">
    -    cklunch
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    -/ - -NEON-Data-Skills -

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    <span></span><span class="Label Label--secondary v-align-middle mr-1">Public</span>
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        </div>
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    -
    +
    +

    Python

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    nu.get_citation(dpID='DP1.20093.001', release='RELEASE-2024')
    +
    ## '@misc{https://doi.org/10.48443/fdfd-d514,\n  doi = {10.48443/FDFD-D514},\n  url = {https://data.neonscience.org/data-products/DP1.20093.001/RELEASE-2024},\n  author = {{National Ecological Observatory Network (NEON)}},\n  keywords = {chemistry, water quality, anions, cations, alkalinity, nutrients, surface water, nitrogen (N), carbon (C), total carbon (TC), acid neutralizing capacity (ANC), analytes, grab samples, chemical properties, swc, phosphorus (P)},\n  language = {en},\n  title = {Chemical properties of surface water (DP1.20093.001)},\n  publisher = {National Ecological Observatory Network (NEON)},\n  year = {2024},\n  copyright = {Creative Commons Zero v1.0 Universal}\n}\n'
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          <nav data-pjax="#js-repo-pjax-container" aria-label="Repository" data-view-component="true" class="js-repo-nav js-sidenav-container-pjax js-responsive-underlinenav overflow-hidden UnderlineNav px-3 px-md-4 px-lg-5">
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    <react-app -app-name=“react-code-view” -initial-path=”/cklunch/NEON-Data-Skills/blob/main/tutorials-in-development/Other/test_code_tabs.html” -style=“display: block; min-height: calc(100vh - 64px)” -data-ssr=“false” -data-lazy=“false” -data-alternate=“false”

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    </main>
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          <footer class="footer pt-8 pb-6 f6 color-fg-muted p-responsive" role="contentinfo" >
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    <template id="snippet-clipboard-copy-button">
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    - - -
    </div>
    +
    +// add bootstrap table styles to pandoc tables
    +function bootstrapStylePandocTables() {
    +  $('tr.odd').parent('tbody').parent('table').addClass('table table-condensed');
    +}
    +$(document).ready(function () {
    +  bootstrapStylePandocTables();
    +});
    +
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    +
     
     
    -
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    diff --git a/tutorials/Other/Concept-intros/test_tabs_full_doc/test_code_tabs_document.md b/tutorials/Other/Concept-intros/test_tabs_full_doc/test_code_tabs_document.md
    index 7258808f..5aecf9e0 100644
    --- a/tutorials/Other/Concept-intros/test_tabs_full_doc/test_code_tabs_document.md
    +++ b/tutorials/Other/Concept-intros/test_tabs_full_doc/test_code_tabs_document.md
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