diff --git a/docs/_Software-Development/02-toolsurvey.md b/docs/_Software-Development/02-toolsurvey.md index 209258b7..fefec829 100644 --- a/docs/_Software-Development/02-toolsurvey.md +++ b/docs/_Software-Development/02-toolsurvey.md @@ -9,7 +9,7 @@ The following data is compiled from a questionnaire of Q4 2022 and is targeted a The goal is to gather this information centrally in NFDI4Microbiota to assess the span of tools and derive consortium-wide guidelines for the tightest integration possible. -# Applications +## Applications ### checkM2 (EMBL) Assessing the quality of metagenome-derived genome bins using machine learning @@ -60,7 +60,7 @@ license: [LGPL 3.0](https://opensource.org/license/lgpl-3-0/) link: [https://gitlab.com/paulklemm_PHD/proteinortho](https://gitlab.com/paulklemm_PHD/proteinortho) -# Benchmarks +## Benchmarks ### AMBER (Helmholtz-HZI) Assessment of Metagenome BinnERs @@ -71,7 +71,7 @@ license: [GPL 3.0](https://opensource.org/license/gpl-3-0/) link: [https://github.com/CAMI-challenge/AMBER](https://github.com/CAMI-challenge/AMBER) -# Databases +## Databases ### BacDive (DSMZ) "BacDive is the worldwide largest database for standardized bacterial information. @@ -102,7 +102,7 @@ license: [CC BY](http://creativecommons.org/licenses/by/4.0/?ref=chooser-v1) link: [https://mediadive.dsmz.de](https://mediadive.dsmz.de) -# Pipelines +## Pipelines ### BioAutoML (UFZ) BioAutoML: Automated Feature Engineering and Metalearning for Classification of Biological Sequences @@ -199,7 +199,7 @@ license: [BSD3](https://opensource.org/license/bsd-3-clause/) link: [https://qiita.ucsd.edu/](https://qiita.ucsd.edu/) -# Webservices +## Webservices ### iPath (EMBL) Interactive Pathways Explorer (iPath) is a web-based tool for the visualization, analysis and customization of various pathway maps.