From 975bb86699350c3d720db154affc943ba646e715 Mon Sep 17 00:00:00 2001 From: Martin Bole <113352405+MartinBoleSlo@users.noreply.github.com> Date: Fri, 16 Feb 2024 14:47:23 +0100 Subject: [PATCH 1/6] Added examples of license uses in 26-licenses.md --- docs/_Research-Data-Management/26-licenses.md | 16 ++++++++++++++++ 1 file changed, 16 insertions(+) diff --git a/docs/_Research-Data-Management/26-licenses.md b/docs/_Research-Data-Management/26-licenses.md index e2f72722..a4316cf8 100644 --- a/docs/_Research-Data-Management/26-licenses.md +++ b/docs/_Research-Data-Management/26-licenses.md @@ -51,6 +51,22 @@ There are different versions of CC that consist of the core license with further ## Usage Creators can declare a works license by selecting it during upload to a website/database/repository or attaching a line stating the title, author and license to the published work. +Here we look at some examples of license usage, found on [Zenodo](https://zenodo.org/). + +### [CC BY 4.0](https://creativecommons.org/licenses/by/4.0/) example usage +We are going to be looking at two examples here: +1. [Metagenome-assembled genomes (MAGs), colorectal cancer (CRC)](https://zenodo.org/records/7008911) [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.7008911.svg)](https://doi.org/10.5281/zenodo.7008911) +2. [Metagenome assemblies and metagenome-assembled genomes from the Daphnia magna microbiota](https://zenodo.org/records/4435010) [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.4435010.svg)](https://doi.org/10.5281/zenodo.4435010) + +Both datasets have been submitted to Zenodo under the CC BY 4.0 license. That means that the data that has been deposited is free to share and free to redistribute (including commercially) in any format or medium. It also enables the data user to build upon or transform it for any purpose (including commercial use). However, the license requires the data user to give appropriate credit to the submitter/data generator. In addition, the reuser must also provide a link to the license and disclose any changes made when licensing their work when derived from work already under deed license. + +## [CC0](https://creativecommons.org/publicdomain/zero/1.0/) example usage +We are going to be looking at two examples here: +1. [Data from: Mining for NRPS and PKS genes revealed a high diversity in the Sphagnum bog metagenome](https://zenodo.org/records/4976456) [![DOI](https://zenodo.org/badge/DOI/10.5061/dryad.hf56v.svg)](https://doi.org/10.5061/dryad.hf56v) +2. [Data from: Generational conservation of composition and diversity of field-acquired midgut microbiota in Anopheles gambiae sensu lato during colonization in the laboratory](https://zenodo.org/records/5001400) [![DOI](https://zenodo.org/badge/DOI/10.5061/dryad.98jj7gk.svg)](https://doi.org/10.5061/dryad.98jj7gk) + +Both datasets have been submitted to Zenodo under the CC0 license. That means that the data that has been deposited is in the public domain. That implies that the data deposited can be copied, modified, distributed, and used even for commercial purposes, and the depositor/generator of the data waives their right to the work. The reuser of data does not need to seek the permission of the data/material submitter or generator. + # Software licenses When software sources are distributed, it is considered good practice to specify an already established license under which it can be used. Software developed in the context of science and funded by public money, usually needs to be made available free of charge and in open source by requirements of the funder or the governing institution's policies. From f16e9bb399a92bfffd902709b94bd1930851db4b Mon Sep 17 00:00:00 2001 From: Martin Bole <113352405+MartinBoleSlo@users.noreply.github.com> Date: Fri, 16 Feb 2024 14:47:53 +0100 Subject: [PATCH 2/6] quickfix 26-licenses.md --- docs/_Research-Data-Management/26-licenses.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/_Research-Data-Management/26-licenses.md b/docs/_Research-Data-Management/26-licenses.md index a4316cf8..557d1a48 100644 --- a/docs/_Research-Data-Management/26-licenses.md +++ b/docs/_Research-Data-Management/26-licenses.md @@ -60,7 +60,7 @@ We are going to be looking at two examples here: Both datasets have been submitted to Zenodo under the CC BY 4.0 license. That means that the data that has been deposited is free to share and free to redistribute (including commercially) in any format or medium. It also enables the data user to build upon or transform it for any purpose (including commercial use). However, the license requires the data user to give appropriate credit to the submitter/data generator. In addition, the reuser must also provide a link to the license and disclose any changes made when licensing their work when derived from work already under deed license. -## [CC0](https://creativecommons.org/publicdomain/zero/1.0/) example usage +### [CC0](https://creativecommons.org/publicdomain/zero/1.0/) example usage We are going to be looking at two examples here: 1. [Data from: Mining for NRPS and PKS genes revealed a high diversity in the Sphagnum bog metagenome](https://zenodo.org/records/4976456) [![DOI](https://zenodo.org/badge/DOI/10.5061/dryad.hf56v.svg)](https://doi.org/10.5061/dryad.hf56v) 2. [Data from: Generational conservation of composition and diversity of field-acquired midgut microbiota in Anopheles gambiae sensu lato during colonization in the laboratory](https://zenodo.org/records/5001400) [![DOI](https://zenodo.org/badge/DOI/10.5061/dryad.98jj7gk.svg)](https://doi.org/10.5061/dryad.98jj7gk) From b577bf0737b3645503588de77313183405c03b21 Mon Sep 17 00:00:00 2001 From: Martin Bole <113352405+MartinBoleSlo@users.noreply.github.com> Date: Tue, 20 Feb 2024 13:06:53 +0100 Subject: [PATCH 3/6] No hyperlinks in Headers docs/_Research-Data-Management/26-licenses.md Co-authored-by: Charlie Pauvert --- docs/_Research-Data-Management/26-licenses.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/_Research-Data-Management/26-licenses.md b/docs/_Research-Data-Management/26-licenses.md index 557d1a48..0e451ad0 100644 --- a/docs/_Research-Data-Management/26-licenses.md +++ b/docs/_Research-Data-Management/26-licenses.md @@ -53,7 +53,7 @@ Creators can declare a works license by selecting it during upload to a website/ Here we look at some examples of license usage, found on [Zenodo](https://zenodo.org/). -### [CC BY 4.0](https://creativecommons.org/licenses/by/4.0/) example usage +### CC BY 4.0 example usage We are going to be looking at two examples here: 1. [Metagenome-assembled genomes (MAGs), colorectal cancer (CRC)](https://zenodo.org/records/7008911) [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.7008911.svg)](https://doi.org/10.5281/zenodo.7008911) 2. [Metagenome assemblies and metagenome-assembled genomes from the Daphnia magna microbiota](https://zenodo.org/records/4435010) [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.4435010.svg)](https://doi.org/10.5281/zenodo.4435010) From e113f88ad59dae78e62a5c505608cc01b3ec2d40 Mon Sep 17 00:00:00 2001 From: Martin Bole <113352405+MartinBoleSlo@users.noreply.github.com> Date: Tue, 20 Feb 2024 13:12:37 +0100 Subject: [PATCH 4/6] Remove hyperlink from header CC0 docs/_Research-Data-Management/26-licenses.md Co-authored-by: Charlie Pauvert --- docs/_Research-Data-Management/26-licenses.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/_Research-Data-Management/26-licenses.md b/docs/_Research-Data-Management/26-licenses.md index 0e451ad0..28c12ac2 100644 --- a/docs/_Research-Data-Management/26-licenses.md +++ b/docs/_Research-Data-Management/26-licenses.md @@ -60,7 +60,7 @@ We are going to be looking at two examples here: Both datasets have been submitted to Zenodo under the CC BY 4.0 license. That means that the data that has been deposited is free to share and free to redistribute (including commercially) in any format or medium. It also enables the data user to build upon or transform it for any purpose (including commercial use). However, the license requires the data user to give appropriate credit to the submitter/data generator. In addition, the reuser must also provide a link to the license and disclose any changes made when licensing their work when derived from work already under deed license. -### [CC0](https://creativecommons.org/publicdomain/zero/1.0/) example usage +### CC0 example usage We are going to be looking at two examples here: 1. [Data from: Mining for NRPS and PKS genes revealed a high diversity in the Sphagnum bog metagenome](https://zenodo.org/records/4976456) [![DOI](https://zenodo.org/badge/DOI/10.5061/dryad.hf56v.svg)](https://doi.org/10.5061/dryad.hf56v) 2. [Data from: Generational conservation of composition and diversity of field-acquired midgut microbiota in Anopheles gambiae sensu lato during colonization in the laboratory](https://zenodo.org/records/5001400) [![DOI](https://zenodo.org/badge/DOI/10.5061/dryad.98jj7gk.svg)](https://doi.org/10.5061/dryad.98jj7gk) From 182a1411c450d81b0098c0ff14caf72efb89dc04 Mon Sep 17 00:00:00 2001 From: Martin Bole <113352405+MartinBoleSlo@users.noreply.github.com> Date: Tue, 20 Feb 2024 14:04:33 +0100 Subject: [PATCH 5/6] Add hyperlink, replace reuser with user docs/_Research-Data-Management/26-licenses.md --- docs/_Research-Data-Management/26-licenses.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/_Research-Data-Management/26-licenses.md b/docs/_Research-Data-Management/26-licenses.md index 28c12ac2..f8da8992 100644 --- a/docs/_Research-Data-Management/26-licenses.md +++ b/docs/_Research-Data-Management/26-licenses.md @@ -58,7 +58,7 @@ We are going to be looking at two examples here: 1. [Metagenome-assembled genomes (MAGs), colorectal cancer (CRC)](https://zenodo.org/records/7008911) [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.7008911.svg)](https://doi.org/10.5281/zenodo.7008911) 2. [Metagenome assemblies and metagenome-assembled genomes from the Daphnia magna microbiota](https://zenodo.org/records/4435010) [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.4435010.svg)](https://doi.org/10.5281/zenodo.4435010) -Both datasets have been submitted to Zenodo under the CC BY 4.0 license. That means that the data that has been deposited is free to share and free to redistribute (including commercially) in any format or medium. It also enables the data user to build upon or transform it for any purpose (including commercial use). However, the license requires the data user to give appropriate credit to the submitter/data generator. In addition, the reuser must also provide a link to the license and disclose any changes made when licensing their work when derived from work already under deed license. +Both datasets have been submitted to Zenodo under the [CC BY 4.0 license](https://creativecommons.org/licenses/by/4.0/). That means that the data that has been deposited is free to share and free to redistribute (including commercially) in any format or medium. It also enables the data user to build upon or transform it for any purpose (including commercial use). However, the license requires the data user to give appropriate credit to the submitter/data generator. In addition, the user must also provide a link to the license and disclose any changes made when licensing their work when derived from work already under license. ### CC0 example usage We are going to be looking at two examples here: From 4e8d17b7086e14da8787bb59be2764b42a4f1e5e Mon Sep 17 00:00:00 2001 From: Martin Bole <113352405+MartinBoleSlo@users.noreply.github.com> Date: Tue, 20 Feb 2024 14:05:16 +0100 Subject: [PATCH 6/6] Add hyperlink, change reuser to user CC0 docs/_Research-Data-Management/26-licenses.md --- docs/_Research-Data-Management/26-licenses.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/_Research-Data-Management/26-licenses.md b/docs/_Research-Data-Management/26-licenses.md index f8da8992..69b5ff1b 100644 --- a/docs/_Research-Data-Management/26-licenses.md +++ b/docs/_Research-Data-Management/26-licenses.md @@ -65,7 +65,7 @@ We are going to be looking at two examples here: 1. [Data from: Mining for NRPS and PKS genes revealed a high diversity in the Sphagnum bog metagenome](https://zenodo.org/records/4976456) [![DOI](https://zenodo.org/badge/DOI/10.5061/dryad.hf56v.svg)](https://doi.org/10.5061/dryad.hf56v) 2. [Data from: Generational conservation of composition and diversity of field-acquired midgut microbiota in Anopheles gambiae sensu lato during colonization in the laboratory](https://zenodo.org/records/5001400) [![DOI](https://zenodo.org/badge/DOI/10.5061/dryad.98jj7gk.svg)](https://doi.org/10.5061/dryad.98jj7gk) -Both datasets have been submitted to Zenodo under the CC0 license. That means that the data that has been deposited is in the public domain. That implies that the data deposited can be copied, modified, distributed, and used even for commercial purposes, and the depositor/generator of the data waives their right to the work. The reuser of data does not need to seek the permission of the data/material submitter or generator. +Both datasets have been submitted to Zenodo under the [CC0 license](https://creativecommons.org/publicdomain/zero/1.0/). That means that the data that has been deposited is in the public domain. That implies that the data deposited can be copied, modified, distributed, and used even for commercial purposes, and the depositor/generator of the data waives their right to the work. The user of data does not need to seek the permission of the data/material submitter or generator. # Software licenses When software sources are distributed, it is considered good practice to specify an already established license under which it can be used.