diff --git a/input/fsh/examples/add-condition-transaction-example-1.fsh b/input/fsh/examples/0001-add-condition-transaction-example.1.fsh
similarity index 98%
rename from input/fsh/examples/add-condition-transaction-example-1.fsh
rename to input/fsh/examples/0001-add-condition-transaction-example.1.fsh
index 84ad930..a210650 100644
--- a/input/fsh/examples/add-condition-transaction-example-1.fsh
+++ b/input/fsh/examples/0001-add-condition-transaction-example.1.fsh
@@ -8,7 +8,7 @@ Alias: $DataOperation = http://terminology.hl7.org/CodeSystem/v3-DataOperation
 Alias: $CareConnect-SDSJobRoleName-1 = https://fhir.hl7.org.uk/STU3/CodeSystem/CareConnect-SDSJobRoleName-1
 Alias: $RARecord-AdjustmentCategory-1 = https://fhir.nhs.uk/STU3/CodeSystem/RARecord-AdjustmentCategory-1
 
-Instance: add-condition-transaction-example-1
+Instance: 0001-add-condition-transaction-example.1
 InstanceOf: Bundle
 Usage: #example
 * type = #transaction
diff --git a/input/fsh/examples/add-condition-transaction-example-2.fsh b/input/fsh/examples/0002-add-condition-transaction-example.2.fsh
similarity index 98%
rename from input/fsh/examples/add-condition-transaction-example-2.fsh
rename to input/fsh/examples/0002-add-condition-transaction-example.2.fsh
index ed427f1..f96190a 100644
--- a/input/fsh/examples/add-condition-transaction-example-2.fsh
+++ b/input/fsh/examples/0002-add-condition-transaction-example.2.fsh
@@ -8,7 +8,7 @@ Alias: $DataOperation = http://terminology.hl7.org/CodeSystem/v3-DataOperation
 Alias: $CareConnect-SDSJobRoleName-1 = https://fhir.hl7.org.uk/STU3/CodeSystem/CareConnect-SDSJobRoleName-1
 Alias: $RARecord-AdjustmentCategory-1 = https://fhir.nhs.uk/STU3/CodeSystem/RARecord-AdjustmentCategory-1
 
-Instance: add-condition-transaction-example-2
+Instance: 0002-add-condition-transaction-example.2
 InstanceOf: Bundle
 Usage: #example
 * type = #transaction
diff --git a/input/queries/add-condition-transaction-example-1.md b/input/queries/0001-add-condition-transaction-example.1.md
similarity index 100%
rename from input/queries/add-condition-transaction-example-1.md
rename to input/queries/0001-add-condition-transaction-example.1.md
diff --git a/input/queries/add-condition-transaction-example-2.md b/input/queries/0002-add-condition-transaction-example.2.md
similarity index 100%
rename from input/queries/add-condition-transaction-example-2.md
rename to input/queries/0002-add-condition-transaction-example.2.md
diff --git a/scripts/run-examples.sh b/scripts/run-examples.sh
index 01c45e9..1769513 100755
--- a/scripts/run-examples.sh
+++ b/scripts/run-examples.sh
@@ -14,7 +14,7 @@ SCRIPT_ROOT=$( cd "$(dirname "${BASH_SOURCE[0]}")" ; pwd -P );
 for EXAMPLE in ./input/fsh/examples/*; do
 
   # Get the filename from the path
-  EXAMPLE=$(echo $EXAMPLE | awk -F '/' '{print $5}');
+  EXAMPLE=$(echo $EXAMPLE | awk -F '/' '{print $5}' | awk -F '.' '{print $1}');
 
   # This relies on SUSHI having been ran to generate JSON representations of the resources.
   GENERATED=$(echo ./fsh-generated/resources/*${EXAMPLE%.*}*);