Dockerfile

FROM intel/oneapi-hpckit:2021.2-devel-centos8 as builder
LABEL maintainer "Tom Robinson"

#-------------------------------------------------------------
## Set up packages needed
RUN yum update -y 
RUN yum install -y git
RUN yum install -y patch
RUN yum install -y zlib
RUN yum install -y wget
RUN yum install -y curl 
RUN yum install -y m4

## Set compilers
ENV FC=ifort
ENV CC=icc
ENV build=/opt
ENV IO_LIBS=${build}/io_libs
## Build zlib and szip and curl
RUN cd $build \
&& zlib="zlib-1.2.11" \
&& rm -rf zlib* \
&& wget http://www.zlib.net/zlib-1.2.11.tar.gz \
&& tar xzf zlib-1.2.11.tar.gz \
&& cd $zlib \
&& ./configure --prefix=${IO_LIBS} \
&& make \
&& make -j 20 install
ENV CC "icc -fPIC"
RUN cd $build \
&& szip="szip-2.1.1" \
&& rm -rf szip* \
&& wget https://support.hdfgroup.org/ftp/lib-external/szip/2.1.1/src/szip-2.1.1.tar.gz \
&& tar xzf szip-2.1.1.tar.gz \
&& cd $szip \
&& ./configure FC=ifort CC=icc --prefix=${IO_LIBS} CPPDEFS="-fPIC" \
&& make \
&& make -j 20 install
RUN cd $build \
&& curl="curl-7.74.0" \
&& rm -rf curl* \
&& wget https://curl.haxx.se/download/${curl}.tar.gz \
&& tar xzf ${curl}.tar.gz \
&& cd $curl \
&& ./configure FC=ifort CC=icc --prefix=${IO_LIBS} \
&& make \
&& make -j 20 install

ENV LD_LIBRARY_PATH=${IO_LIBS}/lib:${LD_LIBRARY_PATH}:/opt/io_libs/lib

## Set compilers
ENV FC=ifort
ENV CC=icc
## Install HDF5
RUN cd /opt \
&& hdf5="hdf5-1.12.0"  \
&& wget https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.12/${hdf5}/src/${hdf5}.tar.gz \
&& tar xzf ${hdf5}.tar.gz \
&& cd $hdf5 \
&& hdf5_opts="FC=ifort CC=icc --prefix=/opt/hdf5 --enable-fortran --enable-hl" \
&& ./configure $hdf5_opts \
&& make -j 20 install \
&& echo "HDF5 finished building"

#*********************
## Install NetCDF-C
#*********************
ENV LD_LIBRARY_PATH=/opt/hdf5/lib:${LD_LIBRARY_PATH}
RUN cd /opt \
&& version="4.7.4" \
&& netcdfc="netcdf-c-"${version} \
&& rm -rf netcdf \
&& wget -O ${netcdfc}.tar.gz https://github.com/Unidata/netcdf-c/archive/v${version}.tar.gz \
&& tar xzf ${netcdfc}.tar.gz \
&& cd $netcdfc \
&& ./configure --prefix=/opt/netcdf-c CPPFLAGS='-I/opt/hdf5/include -I${IO_LIBS}/include' LDFLAGS='-L/opt/hdf5/lib -L${IO_LIBS}/lib' --disable-dap \ 
&& make \
&& make -j 20 install \
&& echo " NetCDF-C finished building"

ENV LD_LIBRARY_PATH=/opt/netcdf-c/lib:${LD_LIBRARY_PATH}
ENV PATH=/opt/netcdf-c/bin:${PATH}

## Install netcdf fortran
ENV LDFLAGS="-L/opt/netcdf-c/lib -lnetcdf"
RUN cd /opt \
&& nfversion=4.5.3 \
&& netcdff="netcdf-fortran-${nfversion}" \
&& rm -rf $netcdff \
&& wget -O ${netcdff}.tar.gz https://github.com/Unidata/netcdf-fortran/archive/v${nfversion}.tar.gz \
&& tar xzf ${netcdff}.tar.gz \
&& cd $netcdff \
&& ./configure CPPFLAGS="-I/opt/netcdf-c/include -I/opt/hdf5/include/" --prefix=/opt/netcdf-fortran \
&& make \
&& make -j20 install

ENV PATH=/opt/netcdf-fortran/bin:${PATH}

ENV LD_LIBRARY_PATH=/opt/netcdf-c/lib:/opt/hdf5/lib:/opt/netcdf-fortran/lib:${LD_LIBRARY_PATH}
ENV LIBRARY_PATH=${LD_LIBRARY_PATH}

## Build the model
RUN mkdir -p /opt/AM4
RUN git clone --recursive https://github.com/NOAA-GFDL/AM4.git -b 2021.03 \
 && cd AM4/exec \
 && make HDF_INCLUDE=-I/opt/hdf5/include \
 && cp am4_xanadu_2021.03.x /opt/AM4 \
 && make clean_all

##############################################################################################################
# Stage 2 with the minimum
FROM intel/oneapi-runtime:centos8
RUN ls
COPY --from=builder /opt/netcdf-c /opt/netcdf-c
COPY --from=builder /opt/netcdf-fortran /opt/netcdf-fortran
COPY --from=builder /opt/hdf5 /opt/hdf5
COPY --from=builder /opt/AM4 /opt/AM4
ENV PATH=/opt/AM4:/opt/netcdf-fortran/bin:/opt/netcdf-c/bin:${PATH}
ENV LD_LIBRARY_PATH=/opt/netcdf-c/lib:/opt/hdf5/lib:/opt/netcdf-fortran/lib:/opt/io_libs/lib${LD_LIBRARY_PATH}
ENV LIBRARY_PATH=${LD_LIBRARY_PATH}
## Add permissions to the AM4
RUN chmod 777 /opt/AM4/am4_xanadu_2021.03.x