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.gitlab-ci.yml
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stages:
- setup
- builds
- run
- tests
- cleanup
# JOB_DIR points to a persistent working space used for most stages in this pipeline but
# that is unique to this pipeline.
# We use the "fetch" strategy to speed up the startup of stages
variables:
JOB_DIR: "/gpfs/f5/gfdl_o/scratch/oar.gfdl.mom6-account/runner/builds/$CI_PIPELINE_ID"
GIT_STRATEGY: fetch
# Always eport value of $JOB_DIR
before_script:
- echo Job directory set to $JOB_DIR
# Test that merge with dev/gfdl works.
p:merge:
stage: setup
tags:
- mom6-ci-c5
script:
- git pull --no-edit https://github.com/NOAA-GFDL/MOM6.git dev/gfdl
# Setup the persistent JOB_DIR for all subsequent stages
#
# This basically setups up a complete tree much as a user would in their workflow
p:clone:
stage: setup
tags:
- mom6-ci-c5
script:
# NOTE: We could sweep any builds older than 3 days here if needed
#- find $HOME/ci/[0-9]* -mtime +3 -delete 2> /dev/null || true
- .gitlab/pipeline-ci-tool.sh create-job-dir
#.gitlab/pipeline-ci-tool.sh clean-job-dir
# Make work spaces for running simultaneously in parallel jobs
#
# Each work space is a clone of MOM6-examples with symbolic links for the build and data directories
# so they can share executables which can run simultaneously without interfering with each other
s:work-space:pgi:
stage: setup
tags:
- mom6-ci-c5
needs: ["p:clone"]
script:
- .gitlab/pipeline-ci-tool.sh copy-test-space pgi
s:work-space:intel:
stage: setup
tags:
- mom6-ci-c5
needs: ["p:clone"]
script:
- .gitlab/pipeline-ci-tool.sh copy-test-space intel
s:work-space:gnu:
stage: setup
tags:
- mom6-ci-c5
needs: ["p:clone"]
script:
- .gitlab/pipeline-ci-tool.sh copy-test-space gnu
s:work-space:gnu-restarts:
stage: setup
tags:
- mom6-ci-c5
needs: ["p:clone"]
script:
- .gitlab/pipeline-ci-tool.sh copy-test-space gnu-rst
# Compile executables
#
# gnu:repro, gnu:debug, intel:repro and pgi:repro are used by their respective run:* jobs
# gnu:ice-only-nolib and gnu:ocean-only-nolibs are not used but simply test that the model compiles without libraries
compile:pgi:repro:
stage: builds
needs: ["p:clone"]
tags:
- mom6-ci-c5
script:
- .gitlab/pipeline-ci-tool.sh mrs-compile repro_pgi
compile:intel:repro:
stage: builds
needs: ["p:clone"]
tags:
- mom6-ci-c5
script:
- .gitlab/pipeline-ci-tool.sh mrs-compile repro_intel
compile:gnu:repro:
stage: builds
needs: ["p:clone"]
tags:
- mom6-ci-c5
script:
- .gitlab/pipeline-ci-tool.sh mrs-compile repro_gnu mrs-compile static_gnu
compile:gnu:debug:
stage: builds
needs: ["p:clone"]
tags:
- mom6-ci-c5
script:
- .gitlab/pipeline-ci-tool.sh mrs-compile debug_gnu
compile:gnu:ocean-only-nolibs:
stage: builds
needs: ["p:clone"]
tags:
- mom6-ci-c5
script:
- .gitlab/pipeline-ci-tool.sh nolibs-ocean-only-compile gnu
compile:gnu:ice-ocean-nolibs:
stage: builds
needs: ["p:clone"]
tags:
- mom6-ci-c5
script:
- .gitlab/pipeline-ci-tool.sh nolibs-ocean-ice-compile gnu
# Runs
run:pgi:
stage: run
needs: ["s:work-space:pgi","compile:pgi:repro"]
tags:
- mom6-ci-c5
script:
- sbatch --clusters=c5 --nodes=12 --time=${MOM6_RUN_JOB_DURATION:=15:00} --account=gfdl_o --qos=debug --job-name=mom6_pgi_tests --output=log.$CI_JOB_ID --wait .gitlab/pipeline-ci-tool.sh run-suite pgi SNL && ( egrep -v 'pagefaults|HiWaterMark=' log.$CI_JOB_ID ; echo Job returned normally ) || ( cat log.$CI_JOB_ID ; echo Job failed ; exit 911 )
- test -f $JOB_DIR/CI-BATCH-SUCCESS-pgi-SNL || ( echo Batch job did not complete ; exit 911 )
run:intel:
stage: run
needs: ["s:work-space:intel","compile:intel:repro"]
tags:
- mom6-ci-c5
script:
- sbatch --clusters=c5 --nodes=12 --time=${MOM6_RUN_JOB_DURATION:=15:00} --account=gfdl_o --qos=debug --job-name=mom6_intel_tests --output=log.$CI_JOB_ID --wait .gitlab/pipeline-ci-tool.sh run-suite intel SNL && ( egrep -v 'pagefaults|HiWaterMark=' log.$CI_JOB_ID ; echo Job returned normally ) || ( cat log.$CI_JOB_ID ; echo Job failed ; exit 911 )
- test -f $JOB_DIR/CI-BATCH-SUCCESS-intel-SNL || ( echo Batch job did not complete ; exit 911 )
run:gnu:
stage: run
needs: ["s:work-space:gnu","compile:gnu:repro","compile:gnu:debug"]
tags:
- mom6-ci-c5
script:
- sbatch --clusters=c5 --nodes=12 --time=${MOM6_RUN_JOB_DURATION:=15:00} --account=gfdl_o --qos=debug --job-name=mom6_gnu_tests --output=log.$CI_JOB_ID --wait .gitlab/pipeline-ci-tool.sh run-suite gnu SNLDT && ( egrep -v 'pagefaults|HiWaterMark=' log.$CI_JOB_ID ; echo Job returned normally ) || ( cat log.$CI_JOB_ID ; echo Job failed ; exit 911 )
- test -f $JOB_DIR/CI-BATCH-SUCCESS-gnu-SNLDT || ( echo Batch job did not complete ; exit 911 )
run:gnu-restarts:
stage: run
needs: ["s:work-space:gnu-restarts","compile:gnu:repro"]
tags:
- mom6-ci-c5
script:
- sbatch --clusters=c5 --nodes=12 --time=${MOM6_RUN_JOB_DURATION:=15:00} --account=gfdl_o --qos=debug --job-name=mom6_gnu_restarts --output=log.$CI_JOB_ID --wait .gitlab/pipeline-ci-tool.sh run-suite gnu R && ( egrep -v 'pagefaults|HiWaterMark=' log.$CI_JOB_ID ; echo Job returned normally ) || ( cat log.$CI_JOB_ID ; echo Job failed ; exit 911 )
- test -f $JOB_DIR/CI-BATCH-SUCCESS-gnu-R || ( echo Batch job did not complete ; exit 911 )
# GH/autoconf tests (duplicates the GH actions tests)
#
# These stages replace the "before_script" and so start in the transient work-space provided by gitlab.
# We work here to avoid collisions with parallel jobs
actions:gnu:
stage: tests
needs: []
tags:
- mom6-ci-c5
before_script:
- echo -e "\e[0Ksection_start:`date +%s`:submodules[collapsed=true]\r\e[0KCloning submodules"
- git submodule init ; git submodule update
- echo -e "\e[0Ksection_end:`date +%s`:submodules\r\e[0K"
script:
- echo -e "\e[0Ksection_start:`date +%s`:compile[collapsed=true]\r\e[0KCompiling executables"
- cd .testing
- module unload darshan-runtime intel PrgEnv-intel ; module load PrgEnv-gnu/8.5.0 cray-hdf5 cray-netcdf ; module switch gcc-native/12.3
- FC=ftn MPIFC=ftn CC=cc make -s -j
- MPIRUN= FC=ftn MPIFC=ftn CC=cc make preproc -s -j
- echo -e "\e[0Ksection_end:`date +%s`:compile\r\e[0K"
- (echo '#!/bin/bash';echo 'make MPIRUN="srun -mblock --exclusive" test -s -j') > job.sh
- sbatch --clusters=c5 --nodes=2 --time=0:10:00 --account=gfdl_o --qos=debug --job-name=MOM6.gnu.testing --output=log.$CI_JOB_ID --wait job.sh || ( cat log.$CI_JOB_ID ; exit 911 ) && make test -s
- make test.summary
actions:intel:
stage: tests
needs: []
tags:
- mom6-ci-c5
before_script:
- echo -e "\e[0Ksection_start:`date +%s`:submodules[collapsed=true]\r\e[0KCloning submodules"
- git submodule init ; git submodule update
- echo -e "\e[0Ksection_end:`date +%s`:submodules\r\e[0K"
script:
- echo -e "\e[0Ksection_start:`date +%s`:compile[collapsed=true]\r\e[0KCompiling executables"
- cd .testing
- module unload darshan-runtime ; module unload intel cray-libsci cray-mpich PrgEnv-intel ; module load PrgEnv-intel intel/2023.2.0 cray-hdf5 cray-netcdf cray-mpich
- FC=ftn MPIFC=ftn CC=cc make -s -j
- MPIRUN= FC=ftn MPIFC=ftn CC=cc make preproc -s -j
- echo -e "\e[0Ksection_end:`date +%s`:compile\r\e[0K"
- (echo '#!/bin/bash';echo 'make MPIRUN="srun -mblock --exclusive" test -s -j') > job.sh
- sbatch --clusters=c5 --nodes=2 --time=0:10:00 --account=gfdl_o --qos=debug --job-name=MOM6.intel.testing --output=log.$CI_JOB_ID --wait job.sh || ( cat log.$CI_JOB_ID ; exit 911 ) && make test -s
- make test.summary
# Tests
#
# stats file tests involve comparing the check sums of the generated files against the check sums in the stats-repo
# log file tests involve comparing the check sums of the generated files against the check sums in MOM6-examples
t:pgi:symmetric:
stage: tests
needs: ["run:pgi"]
tags:
- mom6-ci-c5
script:
- .gitlab/pipeline-ci-tool.sh check-stats pgi S
t:pgi:non-symmetric:
stage: tests
needs: ["run:pgi"]
tags:
- mom6-ci-c5
script:
- .gitlab/pipeline-ci-tool.sh check-stats pgi N
t:pgi:layout:
stage: tests
needs: ["run:pgi"]
tags:
- mom6-ci-c5
script:
- .gitlab/pipeline-ci-tool.sh check-stats pgi L
t:pgi:params:
stage: tests
needs: ["run:pgi"]
tags:
- mom6-ci-c5
script:
- .gitlab/pipeline-ci-tool.sh check-params pgi
allow_failure: true
t:intel:symmetric:
stage: tests
needs: ["run:intel"]
tags:
- mom6-ci-c5
script:
- .gitlab/pipeline-ci-tool.sh check-stats intel S
t:intel:non-symmetric:
stage: tests
needs: ["run:intel"]
tags:
- mom6-ci-c5
script:
- .gitlab/pipeline-ci-tool.sh check-stats intel N
t:intel:layout:
stage: tests
needs: ["run:intel"]
tags:
- mom6-ci-c5
script:
- .gitlab/pipeline-ci-tool.sh check-stats intel L
t:intel:params:
stage: tests
needs: ["run:intel"]
tags:
- mom6-ci-c5
script:
- .gitlab/pipeline-ci-tool.sh check-params intel
allow_failure: true
t:gnu:symmetric:
stage: tests
needs: ["run:gnu"]
tags:
- mom6-ci-c5
script:
- .gitlab/pipeline-ci-tool.sh check-stats gnu S
t:gnu:non-symmetric:
stage: tests
needs: ["run:gnu"]
tags:
- mom6-ci-c5
script:
- .gitlab/pipeline-ci-tool.sh check-stats gnu N
t:gnu:layout:
stage: tests
needs: ["run:gnu"]
tags:
- mom6-ci-c5
script:
- .gitlab/pipeline-ci-tool.sh check-stats gnu L
t:gnu:static:
stage: tests
needs: ["run:gnu"]
tags:
- mom6-ci-c5
script:
- .gitlab/pipeline-ci-tool.sh check-stats gnu T
t:gnu:symmetric-debug:
stage: tests
needs: ["run:gnu"]
tags:
- mom6-ci-c5
script:
- .gitlab/pipeline-ci-tool.sh check-stats gnu D
t:gnu:restart:
stage: tests
needs: ["run:gnu-restarts"]
tags:
- mom6-ci-c5
script:
- .gitlab/pipeline-ci-tool.sh check-stats gnu R
t:gnu:params:
stage: tests
needs: ["run:gnu"]
tags:
- mom6-ci-c5
script:
- .gitlab/pipeline-ci-tool.sh check-params gnu
allow_failure: true
t:gnu:diags:
stage: tests
needs: ["run:gnu"]
tags:
- mom6-ci-c5
script:
- .gitlab/pipeline-ci-tool.sh check-diags gnu
allow_failure: true
# We cleanup ONLY if the preceding stages were completed successfully
cleanup:
stage: cleanup
tags:
- mom6-ci-c5
before_script:
- echo Skipping usual preamble
script:
- rm -rf $HOME/ci/$CI_PIPELINE_ID
- rm -rf $JOB_DIR