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Update BGC classes #37

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gcroci2 opened this issue Dec 6, 2024 · 0 comments
Open

Update BGC classes #37

gcroci2 opened this issue Dec 6, 2024 · 0 comments

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@gcroci2
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gcroci2 commented Dec 6, 2024

In nplinker, we added support for MIBiG v4.0 (#286), which uses a new schema for its metadata. Biosynthetic classes have changed in v4.0, and this is the mapping between the old and new classes (see also here):

  • NRP -> NRPS
  • Polyketide -> PKS
  • RiPP -> Ribosomal
  • Terpene -> Terpene
  • Saccharide -> Saccharide
  • Alkaloid -> Other

We need to add support to the new classes in the webapp. We could use npl.config.mibig.version to dynamically decide what BGC classes to use.

@gcroci2 gcroci2 added this to dev Dec 6, 2024
@github-project-automation github-project-automation bot moved this to Backlog in dev Dec 6, 2024
@gcroci2 gcroci2 moved this from Backlog to Todo in dev Dec 6, 2024
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