From 0db25d8b60939a240744cb56fdaa530c272a57d4 Mon Sep 17 00:00:00 2001
From: Arjan Draisma <arjan.draisma@wur.nl>
Date: Tue, 16 Jul 2024 12:54:54 +0200
Subject: [PATCH] remove class

---
 tests/unit/genomics/test_runbigscape.py | 113 +++++++++++++-----------
 1 file changed, 59 insertions(+), 54 deletions(-)

diff --git a/tests/unit/genomics/test_runbigscape.py b/tests/unit/genomics/test_runbigscape.py
index 3882928b..30833dc9 100644
--- a/tests/unit/genomics/test_runbigscape.py
+++ b/tests/unit/genomics/test_runbigscape.py
@@ -3,76 +3,81 @@
 from .. import DATA_DIR
 
 
-class TestRunBigscape:
-    def test_run_bigscape_v1(self, tmp_path):
-        result = bigscape.run_bigscape(
-            antismash_path=DATA_DIR,
-            output_path=tmp_path,
-            extra_params="--help",
-            version=1,
-        )
+def test_run_bigscape_v1(tmp_path):
+    result = bigscape.run_bigscape(
+        antismash_path=DATA_DIR,
+        output_path=tmp_path,
+        extra_params="--help",
+        version=1,
+    )
+
+    assert result is True
+
+
+def test_run_bigscape_v2(tmp_path):
+    result = bigscape.run_bigscape(
+        antismash_path=DATA_DIR,
+        output_path=tmp_path,
+        extra_params="--help",
+        version=2,
+    )
+
+    assert result is True
 
-        assert result is True
 
-    def test_run_bigscape_v2(self, tmp_path):
-        result = bigscape.run_bigscape(
+def test_run_bigscape_small_dataset_v1(tmp_path):
+    result = bigscape.run_bigscape(
+        antismash_path=DATA_DIR / "bigscape/minimal_dataset",
+        output_path=tmp_path,
+        extra_params="",
+        version=1,
+    )
+
+    assert result is True
+
+
+def test_run_bigscape_small_dataset_v2(tmp_path):
+    result = bigscape.run_bigscape(
+        antismash_path=DATA_DIR / "bigscape/minimal_dataset",
+        output_path=tmp_path,
+        extra_params="",
+        version=2,
+    )
+
+    assert result is True
+
+
+def test_run_bigscape_wrong_version(tmp_path):
+    with pytest.raises(ValueError) as e:
+        bigscape.run_bigscape(
             antismash_path=DATA_DIR,
             output_path=tmp_path,
             extra_params="--help",
-            version=2,
+            version=3,
         )
 
-        assert result is True
+    assert "version" in e.value.args[0]
 
-    def test_run_bigscape_small_dataset_v1(self, tmp_path):
-        result = bigscape.run_bigscape(
-            antismash_path=DATA_DIR / "bigscape/minimal_dataset",
+
+def test_input_path_not_exist_v1(tmp_path):
+    with pytest.raises(FileNotFoundError) as e:
+        bigscape.run_bigscape(
+            antismash_path=tmp_path / "not_exist",
             output_path=tmp_path,
             extra_params="",
             version=1,
         )
 
-        assert result is True
+    assert "antismash_path" in e.value.args[0]
+
 
-    def test_run_bigscape_small_dataset_v2(self, tmp_path):
-        result = bigscape.run_bigscape(
-            antismash_path=DATA_DIR / "bigscape/minimal_dataset",
+def test_input_path_not_exist_v2(tmp_path):
+    with pytest.raises(FileNotFoundError) as e:
+        bigscape.run_bigscape(
+            antismash_path=tmp_path / "not_exist",
             output_path=tmp_path,
             extra_params="",
             version=2,
         )
 
-        assert result is True
-
-    def test_run_bigscape_wrong_version(self, tmp_path):
-        with pytest.raises(ValueError) as e:
-            bigscape.run_bigscape(
-                antismash_path=DATA_DIR,
-                output_path=tmp_path,
-                extra_params="--help",
-                version=3,
-            )
-
-        assert "version" in e.value.args[0]
-
-    def test_input_path_not_exist_v1(self, tmp_path):
-        with pytest.raises(FileNotFoundError) as e:
-            bigscape.run_bigscape(
-                antismash_path=tmp_path / "not_exist",
-                output_path=tmp_path,
-                extra_params="",
-                version=1,
-            )
-
-        assert "antismash_path" in e.value.args[0]
-
-    def test_input_path_not_exist_v2(self, tmp_path):
-        with pytest.raises(FileNotFoundError) as e:
-            bigscape.run_bigscape(
-                antismash_path=tmp_path / "not_exist",
-                output_path=tmp_path,
-                extra_params="",
-                version=2,
-            )
-
-        assert "antismash_path" in e.value.args[0]
+    assert "antismash_path" in e.value.args[0]