format-and-test.yml

name: clang-format, build and run
on: [push]
jobs:
  format-and-build:
    runs-on: ubuntu-latest
    steps:
      - name: Check out repository code
        uses: actions/checkout@v4
      - name: Install clang-format-18
        run: |
            sudo apt update
            sudo apt install pipx
            pipx ensurepath
            pipx install clang-format
      - name: Run clang-format h, cpp and hpp files
        run: find . -iname '*.h' -o -iname '*.cpp' -o -iname '*.hpp' | xargs clang-format --dry-run -Werror
      - name: Build
        run: |
          # install catch2
          git clone https://github.com/catchorg/Catch2.git
          cd Catch2
          cmake -B build -S . -DBUILD_TESTING=OFF
          sudo cmake --build build/ --target install
          cd ..

          mkdir build && cd build/
          cmake ..
          cmake --build .
      - name: Run model
        run: |
          mkdir sample_results
          build/src/transfil\_N -s sample_inputs/scenario.xml -n sample_inputs/population_distribution.csv -p sample_inputs/random_parameters.txt -g sample_inputs/random_seeds.txt -r 2 -t 1 -o sample_results
      - name: Run tests
        run: |
          ctest --test-dir build/tests --output-on-failure