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[cudapoa] overlapping vertical/diagonal update of score matrix with horizontal update #587

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r-mafi opened this issue Oct 15, 2020 · 0 comments
Open

[cudapoa] overlapping vertical/diagonal update of score matrix with horizontal update #587

r-mafi opened this issue Oct 15, 2020 · 0 comments
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cudapoa GPU-based partial order alignment enhancement New feature or request

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r-mafi commented Oct 15, 2020

investigate overlapping vertical/diagonal update of score matrix in NW with horizontal update. A crude measurement on a short-read set indicated up to 40% of the time can be spent on vertical/diagonal update.
@r-mafi r-mafi added enhancement New feature or request cudapoa GPU-based partial order alignment labels Oct 15, 2020
@r-mafi r-mafi self-assigned this Oct 15, 2020
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cudapoa GPU-based partial order alignment enhancement New feature or request
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