PProcess 'PhilosopherFilter' finished, exit code: 2 Process returned non-zero exit code, stopping

[baynec2]

- Upload your log file
(If a log file hasn't been generated, go to the 'Run' tab in FragPipe, click 'Export Log', zip the resulting "log_[date_time].txt" file to avoid truncation, then attach the zipped file by drag & drop here.)

log_2024-09-16_18-23-59.txt
log_2024-10-23_16-04-31.txt

- Describe the issue or question:

A couple of weeks ago, I ran some data through fragpipe and it worked great (see log_2024-09-16_18-23-59.txt)

I wanted to change some of the parameters of the workflow, so I modified them and re-ran on the same files. Before doing this, I had updated to the newest version of Fragpipe and related software.

Upon doing this I got the Process 'PhilosopherFilter' finished, exit code: 2 error, so I figured it had to do with some of the parameters I changed.

However, when I loaded the workflow settings from the run that had previously worked- I got the same error. See attached log_2024-10-23_16-04-31.txt

I have tried increasing the FDR threshold, and several other options all with no luck. Would you be able to help me troubleshoot what is causing this error?

Thanks,
Charlie