Add examples with tests for various ways to include <morphology> and … #260


	name: Build all NML Java

	on:
	push:
	branches: [ master, development, experimental, documentation_update, osb, update ]
	pull_request:
	branches: [ master, development, experimental, documentation_update, osb, update ]

	jobs:
	build:
	runs-on: ubuntu-latest
	strategy:
	fail-fast: false
	matrix:
	java: [ '8', '11', '16', '17', '19', '21' ]

	steps:
	- uses: actions/checkout@v4

	- name: Set up JDK ${{ matrix.java }}
	uses: actions/setup-java@v4
	with:
	java-version: ${{ matrix.java }}
	java-package: jdk
	distribution: 'adopt'

	- name: Install NeuroML 2 with Maven
	run: \|
	java -version
	mvn install

	- name: Install jNeuroML
	run: \|
	export main_repo_branch=${GITHUB_REF##*/}
	if [[ ${main_repo_branch} != "master" && ${main_repo_branch} != "development" && ${main_repo_branch} != "experimental" && ${main_repo_branch} != "osb" ]]; then main_repo_branch=development ; fi
	echo Using branch $main_repo_branch
	git clone https://github.com/NeuroML/jNeuroML.git
	cd jNeuroML
	git checkout $main_repo_branch
	python getNeuroML.py $main_repo_branch # will call mvn install on this & other repos
	ls -alt
	mvn dependency:tree
	./jnml -v
	cd ..

	- name: Install OMV
	run: \|
	pwd
	echo $GITHUB_WORKSPACE
	export PATH=$PATH:$GITHUB_WORKSPACE/jNeuroML
	export JNML_HOME=$GITHUB_WORKSPACE/jNeuroML
	pip install git+https://github.com/OpenSourceBrain/osb-model-validation
	omv list -V
	env
	pip freeze

	- name: Test examples using OMV
	run: \|
	cd $GITHUB_WORKSPACE/NeuroML2/LEMSexamples
	omv all -V --engine=jNeuroML --ignore-non-py3
	omv list -V

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