From 42f158182f320c839970ffc8999f833e08b78ad6 Mon Sep 17 00:00:00 2001 From: pgleeson Date: Tue, 20 Aug 2024 14:45:09 +0100 Subject: [PATCH] Added more to history file --- HISTORY.md | 17 +++++++++++++++++ 1 file changed, 17 insertions(+) diff --git a/HISTORY.md b/HISTORY.md index 526e9c6..570f3d8 100644 --- a/HISTORY.md +++ b/HISTORY.md @@ -15,6 +15,23 @@ v2.3.1 / 2024-08-25 * Adds support for external / in cell element. Also simulator mappings for NEURON/NetPyNE support this. See [here](https://docs.neuroml.org/Userdocs/ImportingMorphologyFiles.html#neuroml2) for more details. Multiple examples of NeuroML2/LEMS files using this feature can be found [here](https://github.com/NeuroML/NeuroML2/tree/development/LEMSexamples/morphologies). +* pyNeuroML analysis feature updates: better support for analysing kinetic scheme based channels in `pynml-channelanalysis`; better support for plotting generated spike trains with `pynml-plotspikes`. + +* Improved testing of Java based libraries on latest versions of Java and recent Mac OS versions. + +* Improved support for adding RDF annotations to NeuroML files. + +* Added ability to load (a subset of) XPPAUT files with `pynml-xpp` and export the model to LEMS or back to XPPAUT. + +* Improvements to handling of SBML and SED-ML files - added to pynml ability to validate both formats, or run SED-ML files which refer to SBML models using simulator tellurium. + +* Added option to archive NeuroML models as COMBINE Archives with `pynml-archive`. + +* Initial support for sending archived NeuroML models to Biosimulations.org for simulation. + +* Improved ability for pynml and related tools to detect the correct file type (NeuroML or LEMS) for the appropriate export/simulation option, and give advice when an incorrect file is provided. + +* Updates to `pynml-plotmorph` for plotting morphologies in 2D, and in 3D with VisPy. v2.3 / 2023-09-20