ci.yml

# This workflow will build a Java project with Maven
# For more information see: https://help.github.com/actions/language-and-framework-guides/building-and-testing-java-with-maven

name: Java CI with Maven

on:
  push:
    branches:  [ master, development, experimental, osb* ]
  pull_request:
    branches:  [ master, development, experimental, osb* ]

jobs:
  build_and_test:

    runs-on: ${{ matrix.runs-on }}
    strategy:
      fail-fast: false
      matrix:
        java: [ '8', '11', '16', '17', '19', '21' ]
        runs-on: [ubuntu-latest, macos-12, windows-2019] # Note macos-12, not latest/14, due to hdf5 install issue
        exclude:
          - runs-on: macos-latest
            java: "8"
          - runs-on: macos-latest
            java: "16"

    name: Test on Java ${{ matrix.Java }} on ${{ matrix.runs-on }}
    steps:
    - uses: actions/checkout@v4
    - name: Set up JDK ${{ matrix.Java }}
      uses: actions/setup-java@v4
      with:
        java-version: ${{ matrix.Java }}
        distribution: 'adopt'

    - name: Install using getNeuroML.py (non Win)
      env:
        main_repo_branch: ${GITHUB_REF_NAME}
      if: ${{ matrix.runs-on != 'windows-2019' }}
      run: |
        export main_repo_branch=${{env.main_repo_branch}}
        if [[ ${main_repo_branch} != "master" && ${main_repo_branch} != "development" && ${main_repo_branch} != "experimental" && ${main_repo_branch} != *"osb"* ]]; then main_repo_branch=development ; fi
        echo Using branch $main_repo_branch

        python getNeuroML.py $main_repo_branch  -dont_switch_jneuroml_branch # will call mvn install on this & other repos
        mvn dependency:tree
        ./jnml -v

    - name: Install using getNeuroML.py (Win)
      if: ${{ matrix.runs-on == 'windows-2019' }}
      run: |
        $env:main_repo_branch=$env:GITHUB_REF_NAME
        if ( $env:main_repo_branch -ne "master" -and $env:main_repo_branch -ne "development" -and $env:main_repo_branch -ne "experimental" -and $env:main_repo_branch -notlike '*osb*' ) { $env:main_repo_branch="development" }
        echo "Using branch $env:main_repo_branch..."

        python getNeuroML.py $env:main_repo_branch -dont_switch_jneuroml_branch # will call mvn install on this & other repos

        mvn dependency:tree
        .\jnml.bat -v

    - name: Further tests (non Win)
      if: ${{ matrix.runs-on != 'windows-2019' }}
      run: |
        pwd
        ls -alt
        mkdir results
        ./jnml -validate ../NeuroML2/examples/NML2_FullNeuroML.nml # Test validate
        ./jnml ../NeuroML2/LEMSexamples/LEMS_NML2_Ex9_FN.xml -nogui # Test running with jLEMS
        ./jnml ../NeuroML2/LEMSexamples/LEMS_NML2_Ex5_DetCell.xml -nogui
        ./jnml ../NeuroML2/LEMSexamples/LEMS_NML2_Ex9_FN.xml -neuron
        ./jnml ../NeuroML2/LEMSexamples/LEMS_NML2_Ex9_FN.xml -brian
        ./jnml ../NeuroML2/LEMSexamples/LEMS_NML2_Ex9_FN.xml -sedml
        ./jnml ../NeuroML2/LEMSexamples/LEMS_NML2_Ex9_FN.xml -cvode
        ./jnml ../NeuroML2/LEMSexamples/LEMS_NML2_Ex9_FN.xml -matlab
        ./jnml ../NeuroML2/LEMSexamples/LEMS_NML2_Ex9_FN.xml -dlems
        ./jnml ../NeuroML2/LEMSexamples/LEMS_NML2_Ex9_FN.xml -eden
        ./jnml ../NeuroML2/LEMSexamples/regression-tests/LEMS_NML2_Ex5_DetCell_unformatted.xml -nogui
        ./jnml ../NeuroML2/examples/NML2_SimpleMorphology.nml  -svg
        ls -alt ../NeuroML2/examples
        ls -alt ../NeuroML2/LEMSexamples
        env

    - name: Further tests (Win)
      if: ${{ matrix.runs-on == 'windows-2019' }}
      run: |
        pwd
        mkdir results
        .\jnml.bat -validate ..\NeuroML2\examples\NML2_FullNeuroML.nml # Test validate
        .\jnml.bat ..\NeuroML2\LEMSexamples\LEMS_NML2_Ex9_FN.xml -nogui # Test running with jLEMS
        .\jnml.bat ..\NeuroML2\LEMSexamples\LEMS_NML2_Ex5_DetCell.xml -nogui
        .\jnml.bat ..\NeuroML2\LEMSexamples\LEMS_NML2_Ex9_FN.xml -neuron
        .\jnml.bat ..\NeuroML2\LEMSexamples\LEMS_NML2_Ex9_FN.xml -brian
        .\jnml.bat ..\NeuroML2\LEMSexamples\LEMS_NML2_Ex9_FN.xml -sedml
        .\jnml.bat ..\NeuroML2\LEMSexamples\LEMS_NML2_Ex9_FN.xml -cvode
        .\jnml.bat ..\NeuroML2\LEMSexamples\LEMS_NML2_Ex9_FN.xml -matlab
        .\jnml.bat ..\NeuroML2\LEMSexamples\LEMS_NML2_Ex9_FN.xml -dlems
        .\jnml.bat ..\NeuroML2\LEMSexamples\LEMS_NML2_Ex9_FN.xml -eden
        .\jnml.bat ..\NeuroML2\LEMSexamples\regression-tests\LEMS_NML2_Ex5_DetCell_unformatted.xml -nogui
        .\jnml.bat ..\NeuroML2\examples\NML2_SimpleMorphology.nml  -svg