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bgruening.yaml
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---
install_repository_dependencies: true
install_resolver_dependencies: true
install_tool_dependencies: false
tools:
- name: mafft
owner: rnateam
tool_panel_section_label: Multiple Alignments
- name: plotly_ml_performance_plots
owner: bgruening
tool_panel_section_label: Graph/Display Data
- name: plotly_regression_performance_plots
owner: bgruening
tool_panel_section_label: Graph/Display Data
- name: pandas_rolling_window
owner: bgruening
tool_panel_section_label: Statistics
- name: split_file_to_collection
owner: bgruening
tool_panel_section_label: Collection Operations
- name: graphicsmagick_image_convert
owner: bgruening
tool_panel_section_label: "Convert Formats"
- name: glimmer_glimmer_to_gff
owner: bgruening
tool_panel_section_label: "Convert Formats"
- name: graphicsmagick_image_montage
owner: bgruening
tool_panel_section_label: "Convert Formats"
# - name: run_jupyter_job
# owner: bgruening
# tool_panel_section_label: Machine Learning
- name: sklearn_svm_classifier
owner: bgruening
tool_panel_section_label: Machine Learning
- name: sklearn_train_test_eval
owner: bgruening
tool_panel_section_label: Machine Learning
- name: model_prediction
owner: bgruening
tool_panel_section_label: Machine Learning
- name: keras_batch_models
owner: bgruening
tool_panel_section_label: Machine Learning
- name: keras_model_builder
owner: bgruening
tool_panel_section_label: Machine Learning
- name: keras_model_config
owner: bgruening
tool_panel_section_label: Machine Learning
- name: sklearn_sample_generator
owner: bgruening
tool_panel_section_label: Machine Learning
- name: sklearn_estimator_attributes
owner: bgruening
tool_panel_section_label: Machine Learning
- name: sklearn_stacking_ensemble_models
owner: bgruening
tool_panel_section_label: Machine Learning
- name: sklearn_searchcv
owner: bgruening
tool_panel_section_label: Machine Learning
- name: sklearn_build_pipeline
owner: bgruening
tool_panel_section_label: Machine Learning
- name: sklearn_pairwise_metrics
owner: bgruening
tool_panel_section_label: Machine Learning
- name: sklearn_nn_classifier
owner: bgruening
tool_panel_section_label: Machine Learning
- name: sklearn_numeric_clustering
owner: bgruening
tool_panel_section_label: Machine Learning
- name: sklearn_ensemble
owner: bgruening
tool_panel_section_label: Machine Learning
- name: sklearn_feature_selection
owner: bgruening
tool_panel_section_label: Machine Learning
- name: sklearn_data_preprocess
owner: bgruening
tool_panel_section_label: Machine Learning
- name: sklearn_clf_metrics
owner: bgruening
tool_panel_section_label: Machine Learning
- name: sklearn_regression_metrics
owner: bgruening
tool_panel_section_label: Machine Learning
- name: sklearn_discriminant_classifier
owner: bgruening
tool_panel_section_label: Machine Learning
- name: sklearn_generalized_linear
owner: bgruening
tool_panel_section_label: Machine Learning
- name: sklearn_model_validation
owner: bgruening
tool_panel_section_label: Machine Learning
- name: sklearn_fitted_model_eval
owner: bgruening
tool_panel_section_label: Machine Learning
- name: sklearn_model_fit
owner: bgruening
tool_panel_section_label: Machine Learning
- name: sklearn_train_test_split
owner: bgruening
tool_panel_section_label: Machine Learning
- name: sklearn_lightgbm
owner: bgruening
tool_panel_section_label: Machine Learning
- name: sklearn_pca
owner: bgruening
tool_panel_section_label: Machine Learning
- name: ml_visualization_ex
owner: bgruening
tool_panel_section_label: Machine Learning
- name: keras_train_and_eval
owner: bgruening
tool_panel_section_label: Machine Learning
- name: scipy_sparse
owner: bgruening
tool_panel_section_label: Statistics
- name: nanopolish_variants
owner: bgruening
tool_panel_section_label: Nanopore
- name: nanopolish_methylation
owner: bgruening
tool_panel_section_label: Nanopore
- name: nanopolish_eventalign
owner: bgruening
tool_panel_section_label: Nanopore
- name: nanopolish_polya
owner: bgruening
tool_panel_section_label: Nanopore
- name: racon
owner: bgruening
tool_panel_section_label: Assembly
- name: flye
owner: bgruening
tool_panel_section_label: Assembly
- name: mitohifi
owner: bgruening
tool_panel_section_label: Assembly
- name: tgsgapcloser
owner: bgruening
tool_panel_section_label: Assembly
- name: graphmap_overlap
owner: bgruening
tool_panel_section_label: Mapping
- name: graphmap_align
owner: bgruening
tool_panel_section_label: Mapping
- name: create_tool_recommendation_model
owner: bgruening
tool_panel_section_label: Statistics
- name: replace_column_by_key_value_file
owner: bgruening
tool_panel_section_label: Text Manipulation
- name: diff
owner: bgruening
tool_panel_section_label: Text Manipulation
- name: add_line_to_file
owner: bgruening
tool_panel_section_label: Text Manipulation
- name: sklearn_to_categorical
owner: bgruening
tool_panel_section_label: Machine Learning
- name: fastq_info
owner: bgruening
tool_panel_section_label: Quality Control
- name: trim_galore
owner: bgruening
tool_panel_section_label: FASTA/FASTQ
- name: gfastats
owner: bgruening
tool_panel_section_label: FASTA/FASTQ
- name: music_compare
owner: bgruening
tool_panel_section_label: Single-cell
- name: music_manipulate_eset
owner: bgruening
tool_panel_section_label: Single-cell
- name: music_inspect_eset
owner: bgruening
tool_panel_section_label: Single-cell
- name: music_deconvolution
owner: bgruening
tool_panel_section_label: Single-cell
- name: music_construct_eset
owner: bgruening
tool_panel_section_label: Single-cell
- name: pharmcat
owner: bgruening
tool_panel_section_label: Variant Calling
- name: itsx
owner: bgruening
tool_panel_section_label: Metagenomic Analysis
- name: antismash
owner: bgruening
tool_panel_section_label: Annotation
- name: 10x_bamtofastq
owner: bgruening
tool_panel_section_label: Single-cell