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I am having trouble running the achilles profile from the main branch. I am using Windows 11 (10.0.22631 Build 22631) and Docker version 26.1.4, build 5650f9b.
PS C:\Code\Broadsea> docker compose --profile default --profile achilles up
time="2025-02-06T10:44:03Z" level=warning msg="C:\\Code\\Broadsea\\docker-compose.yml: `version` is obsolete"
[+] Running 66/49
✔ ohdsi-atlas-from-image Pulled 216.1s
✔ traefik Pulled 204.9s
✔ broadsea-hades Pulled 174.4s
✔ ohdsi-webapi-from-image Pulled 197.9s
✔ broadsea-atlasdb Pulled 202.7s
[+] Building 10.9s (23/24) docker:desktop-linux
=> [broadsea-content internal] load build definition from Dockerfile 0.0s
=> => transferring dockerfile: 1.18kB 0.0s
=> [broadsea-content internal] load metadata for docker.io/rocker/verse:latest 1.0s
=> [broadsea-content internal] load metadata for docker.io/library/nginx:latest 1.6s
=> [broadsea-run-achilles internal] load build definition from Dockerfile 0.0s
=> => transferring dockerfile: 727B 0.0s
=> [broadsea-run-achilles internal] load metadata for docker.io/rocker/r-ver:4.2.3 1.0s
=> [broadsea-run-achilles internal] load .dockerignore 0.0s
=> => transferring context: 2B 0.0s
=> CACHED [broadsea-run-achilles stage-0 1/4] FROM docker.io/rocker/r-ver:4.2.3@sha256:6dff804fb051f7c38cf9ebcaf307b5102b46e5187ffe2ce921d760a26facd693 0.0s
=> CACHED [broadsea-run-achilles stage-0 2/4] RUN --mount=type=secret,id=GITHUB_PAT GITHUB_PAT=$(cat /run/secrets/GITHUB_PAT) 0.0s
=> ERROR [broadsea-run-achilles stage-0 3/4] RUN <<EOF (apt-get update...) 9.7s
=> [broadsea-content internal] load .dockerignore 0.0s
=> => transferring context: 2B 0.0s
=> [broadsea-content quarto 1/9] FROM docker.io/rocker/verse:latest@sha256:81107b21ff85bef0f4acab42826b834dc2bbcd172fc54568d2f69e41ab3586ce 0.0s
=> [broadsea-content internal] load build context 0.0s
=> => transferring context: 443B 0.0s
=> [broadsea-content stage-1 1/2] FROM docker.io/library/nginx:latest@sha256:91734281c0ebfc6f1aea979cffeed5079cfe786228a71cc6f1f46a228cde6e34 7.9s
=> => resolve docker.io/library/nginx:latest@sha256:91734281c0ebfc6f1aea979cffeed5079cfe786228a71cc6f1f46a228cde6e34 0.0s
=> => sha256:088eea90c3d0a540ee5686e7d7471acbd4063b6e97eaf49b5e651665eb7f4dc7 2.29kB / 2.29kB 0.0s
=> => sha256:e19db8451adb4b9c6dc54aaec5c9fd8917d5267d249a977b95dab00ce960e4bf 43.95MB / 43.95MB 7.1s
=> => sha256:91734281c0ebfc6f1aea979cffeed5079cfe786228a71cc6f1f46a228cde6e34 10.27kB / 10.27kB 0.0s
=> => sha256:97662d24417b316f60607afbca9f226a2ba58f09d642f27b8e197a89859ddc8e 8.58kB / 8.58kB 0.0s
=> => sha256:c29f5b76f736a8b555fd191c48d6581bb918bcd605a7cbcc76205dd6acff3260 28.21MB / 28.21MB 3.9s
=> => sha256:24ff42a0d907c9f6e59a6ce8ad8691f8b72ffad5e1e55584612b86cb632f5cfa 627B / 627B 1.5s
=> => sha256:c558df2179491b5490a7b895e422fffcddcfaec6c045d49907048d32a2ab5784 955B / 955B 2.4s
=> => sha256:976e8f6b25dd4b8451fa52d71524f61103d32dca1af6b1ddb70b0ea848a3e373 403B / 403B 2.6s
=> => sha256:6c78b0ba1a32d228d04680a4dc7bd67a21f2e30f6fc032b5648d0cae756efe14 1.21kB / 1.21kB 2.8s
=> => sha256:84cade77a8319515342dbc0f9d9ce4bbddd2d95f93646091b61a4ca318164a44 1.40kB / 1.40kB 3.0s
=> => extracting sha256:c29f5b76f736a8b555fd191c48d6581bb918bcd605a7cbcc76205dd6acff3260 0.9s
=> => extracting sha256:e19db8451adb4b9c6dc54aaec5c9fd8917d5267d249a977b95dab00ce960e4bf 0.6s
=> => extracting sha256:24ff42a0d907c9f6e59a6ce8ad8691f8b72ffad5e1e55584612b86cb632f5cfa 0.0s
=> => extracting sha256:c558df2179491b5490a7b895e422fffcddcfaec6c045d49907048d32a2ab5784 0.0s
=> => extracting sha256:976e8f6b25dd4b8451fa52d71524f61103d32dca1af6b1ddb70b0ea848a3e373 0.0s
=> => extracting sha256:6c78b0ba1a32d228d04680a4dc7bd67a21f2e30f6fc032b5648d0cae756efe14 0.0s
=> => extracting sha256:84cade77a8319515342dbc0f9d9ce4bbddd2d95f93646091b61a4ca318164a44 0.0s
=> CACHED [broadsea-content quarto 2/9] WORKDIR /tmp 0.0s
=> CACHED [broadsea-content quarto 3/9] RUN apt-get install -y --no-install-recommends wget 0.0s
=> CACHED [broadsea-content quarto 4/9] RUN wget https://github.com/quarto-dev/quarto-cli/releases/download/v1.3.433/quarto-1.3.433-linux-amd64.deb 0.0s
=> CACHED [broadsea-content quarto 5/9] RUN dpkg -i /tmp/quarto-1.3.433-linux-amd64.deb 0.0s
=> CACHED [broadsea-content quarto 6/9] COPY images /tmp/content/images 0.0s
=> CACHED [broadsea-content quarto 7/9] COPY apps.csv /tmp/content/apps.csv 0.0s
=> CACHED [broadsea-content quarto 8/9] COPY index.qmd /tmp/content/index.qmd 0.0s
=> CACHED [broadsea-content quarto 9/9] RUN quarto render /tmp/content/index.qmd -P CONTENT_TITLE:'${CONTENT_TITLE}' -P CONTENT_ARES_DISPLAY:'${CONTENT_ARES_DISPLAY}' -P CONTENT_ATLAS_DISPLA 0.0s
=> [broadsea-content stage-1 2/2] COPY --from=quarto /tmp/content /usr/share/nginx/html/ 0.1s
=> [broadsea-content] exporting to image 0.0s
=> => exporting layers 0.0s
=> => writing image sha256:b07e1eedb29d9063dc6c8a91c4c6595d7aa3e3ce4ca67154981d9191c052a883 0.0s
=> => naming to docker.io/library/broadsea-broadsea-content 0.0s
------
> [broadsea-run-achilles stage-0 3/4] RUN <<EOF (apt-get update...):
0.244 E: Invalid operation update
0.250 Reading package lists...
0.255 Building dependency tree...
0.256 Reading state information...
0.257 E: Unable to locate package openjdk-11-jre-headless
0.258 E: Invalid operation clean
: not foundsh: 5:
' is not available for this version of R
9.688
9.688 A version of this package for your version of R might be available elsewhere,
9.688 see the ideas at
9.688 https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages
9.688 In addition: Warning message:
' is not available for this version of R
9.688
9.688 A version of this package for your version of R might be available elsewhere,
9.688 see the ideas at
9.688 https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages
9.699 /bin/sh: 8: rJava: not found
9.699 /bin/sh: 9: remotes: not found
9.699 /bin/sh: 10: ParallelLogger: not found
9.699 /bin/sh: 11: SqlRender: not found
: not foundsh: 12: DatabaseConnector
: not foundlocal/lib/R/bin/Rcmd: 64: exec: javareconf
------
failed to solve: process "/bin/sh -c apt-get update\r\napt-get install -y --no-install-recommends openjdk-11-jre-headless\r\napt-get clean\r\nrm -rf /var/lib/apt/lists/*\r\n\r\n# The default GitHub Actions runner has 2 vCPUs (https://docs.github.com/en/actions/using-github-hosted-runners/about-github-hosted-runners)\r\ninstall2.r --error --ncpus 2 --skipinstalled --repos \"https://packagemanager.posit.co/cran/latest\" \\\r\n rJava \\\r\n remotes \\ \r\n ParallelLogger \\\r\n SqlRender \\\r\n DatabaseConnector\r\nR CMD javareconf\r\n" did not complete successfully: exit code: 127
The text was updated successfully, but these errors were encountered:
Hello,
I am having trouble running the
achilles
profile from themain
branch. I am using Windows 11 (10.0.22631 Build 22631) and Docker version 26.1.4, build 5650f9b.The text was updated successfully, but these errors were encountered: