_pkgdown.yml

template:
  params:
    bootswatch: cosmo

home:
  links:
  - text: Ask a question
    href: http://forums.ohdsi.org

reference:
  - title: "P-value calibration"
    desc: >
      Functions for calibrating p-values based on an empirical null distribution estimated using negative controls.
    contents:
      - fitNull 
      - fitMcmcNull
      - fitNullNonNormalLl
      - computeTraditionalP 
      - calibrateP 
      - plotMcmcTrace 
      - plotForest 
      - plotCalibration 
      - plotCalibrationEffect 
      - plotExpectedType1Error 
      - computeExpectedAbsoluteSystematicError
      - compareEase
  - title: "Confidence interval calibration"
    desc: >
      Functions for calibrating confidence intervals based on a systematic error model fitted using negative and positive controls.
    contents:
      - fitSystematicErrorModel 
      - convertNullToErrorModel
      - computeTraditionalCi     
      - calibrateConfidenceInterval 
      - plotTrueAndObserved 
      - evaluateCiCalibration 
      - plotCiCalibration 
      - plotCiCalibrationEffect 
      - plotCiCoverage 
      - plotErrorModel 
  - title: "MaxSPRT and calibration"
    desc: >
      Functions for performing empirical calibration when adjusting for sequential testing using MaxSPRT.
    contents:
      - calibrateLlr
      - computeCvBinomial
      - computeCvPoisson
      - computeCvPoissonRegression
  - title: "Data"
    desc: >
      Data (real and simulated) for testing and demonstrating empirical calibration.
    contents:
      - sccs
      - caseControl 
      - cohortMethod 
      - southworthReplication 
      - grahamReplication       
      - simulateControls 
      - simulateMaxSprtData
      
navbar:
  structure:
    right: [hades, github]
  components:
    hades:
      text: hadesLogo
      href: https://ohdsi.github.io/Hades