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Releases: OHDSI/Vocabulary-v5.0

Release notes v20211023

24 Oct 02:32
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What's new

This release provides

  • an update to CPT4, including some dearly needed codes for identifying particular CoViD19 vaccinations. Not all of the new CPT4 codes are mapped by now but we selectively targeted currently requested ones. With a future release remaining meaningful (i.e. not reserved) CPT4 concepts will be mapped as well.
  • an update to AMT based on the June 2021 version with mappings to standard concepts, with one exception (sadly): newly added vaccine concepts remain unmapped in this version due to issues with processing the current data and target structure.
  • a major overhaul of the VA Products vocabulary that has also been renamed to VANDF.
  • the addition of 20 vaccination concepts to the CVX vocabulary
  • an update to the Belgium GGR vocabulary
  • a regular update of NDC
  • a small number of OMOP extension entries (such as eye fundus examination results)

This guide can provide you more background on how to read the release notes.

Domain changes

vocabulary_idold_domain_idnew_domain_idcount
AMTDeviceDrug40
AMTDrugDevice1042
CPT4ProcedureObservation1
OMOP ExtensionMeas ValueObservation7

Newly added concepts grouped by Vocabulary_id and Domain

vocabulary_iddomain_idcount
AMTDevice2897
AMTDrug57247
CPT4Drug21
CPT4Measurement5
CPT4Observation18
CPT4Procedure267
CPT4Visit1
CVXDrug20
GGRDevice28
GGRDrug1351
NDCDevice53
NDCDrug1443
OMOP ExtensionMeasurement31
OMOP ExtensionObservation7
RxNorm ExtensionDrug43015
SPLDevice1
SPLDrug2917
UCUMUnit2
VANDFDrug17449

Standard concept changes

vocabulary_idold_standard_conceptnew_standard_conceptcount
AMTNon-standard with mappingStandard955
AMTNon-standard without mappingStandard87
AMTStandardNon-standard with mapping38
AMTStandardNon-standard without mapping2
GGRNon-standard without mappingStandard127
NDCStandardNon-standard without mapping7
SPLClassificationNon-standard without mapping2
SPLClassificationNon-standard with mapping1

Newly added concepts and their standard concept status

vocabulary_idnew_standard_conceptcount
AMTNon-standard without mapping2514
AMTStandard2892
AMTNon-standard with mapping54738
CPT4Non-standard without mapping1
CPT4Non-standard with mapping16
CPT4Classification59
CPT4Standard236
CVXNon-standard with mapping1
CVXStandard19
GGRStandard28
GGRNon-standard without mapping458
GGRNon-standard with mapping897
NDCStandard53
NDCNon-standard with mapping179
NDCNon-standard without mapping1264
OMOP ExtensionStandard38
RxNorm ExtensionNon-standard without mapping867
RxNorm ExtensionStandard42148
SPLClassification2918
UCUMStandard2
VANDFNon-standard with mapping6891
VANDFNon-standard without mapping10558

Changes of concept mapping status grouped by target domain

vocabulary_idOld target Domain/StatusNew target Domain/Statuscount
AMTDeviceDrug38
AMTDeviceNo mapping2
AMTDrugDevice955
AMTDrugNo mapping1
AMTNew conceptDevice2892
AMTNew conceptDrug54738
AMTNo mappingDevice87
AMTNo mappingDrug1640
CPT4New conceptDrug20
CPT4New conceptMeasurement5
CPT4New conceptObservation9
CPT4New conceptProcedure218
CVXNew conceptDrug20
GGRNew conceptDevice28
GGRNew conceptDrug893
GGRNo mappingDevice127
GGRNo mappingDrug7
MeSHMeasurementMeasurement/Procedure1
NDCDeviceNo mapping7
NDCNew conceptDevice53
NDCNew conceptDrug179
NDCNo mappingDrug1997
OMOP ExtensionMeas ValueObservation7
OMOP ExtensionNew conceptMeasurement31
OMOP ExtensionNew conceptObservation7
RxNorm ExtensionNew conceptDrug42148
UCUMNew conceptUnit2
VANDFNew conceptDrug6891
VANDFNo mappingDrug1463

New vocabularies added

vocabulary_id
VANDF

If you have any questions, please try to find the answers on http://forums.ohdsi.org. If you can't find it, please ask here: http://forums.ohdsi.org/t/vocabulary-release-questions/6650

Release notes v20211004

05 Oct 00:22
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This guide can provide you more background on how to read the release notes.

What's new

  • We released the updated version of ATC (07-Sep-2021 version with 2022 additions). New concepts were added and hierarchical relationships were improved. We will soon publish a more detailed article about the ATC work.
  • New ICDO Topography-Histology combinations were added. All metastatic ICDO Conditions are mapped to the Cancer Modifier vocabulary now. Going forward this will be the common practice of metastatic cancer mapping. SNOMED secondary malignant neoplasm concepts will be made non-standard in the next SNOMED release.
  • Cancer Modifier Metastasis concept class was cleaned up, some redundant codes were de-standardized.
  • OMOP Extension: we added the EORTC Quality of Life Questionnaire С30 and the EuroQol five dimension three level scale to the OMOP Extension vocabulary as well as some specific Immunoglobulin lab tests and Meas values.
  • ISBT has received its regular update with 28-Sep-2021 version.
  • NDC has received its regular update with 03-Oct-2021 version.

Domain changes

there were no changes here

Newly added concepts grouped by Vocabulary_id and Domain

vocabulary_iddomain_idcount
ATCDrug344
Cancer ModifierMeasurement2
ICDO3Condition125
ISBTDevice29
ISBT AttributeObservation3
NDCDevice6
NDCDrug4228
OMOP ExtensionMeasurement12
OMOP ExtensionMeas Value7
OMOP ExtensionObservation30
SPLDrug4926

Standard concept changes

vocabulary_idold_standard_conceptnew_standard_conceptcount
ATCClassificationNon-standard with mapping76
ATCClassificationNon-standard without mapping7
ATCClassificationNon-standard with mapping3
Cancer ModifierStandardNon-standard without mapping5
Cancer ModifierStandardNon-standard with mapping4
ICDO3StandardNon-standard with mapping34
ICDO3Non-standard with mappingStandard1
SPLClassificationNon-standard with mapping1

Newly added concepts and their standard concept status

vocabulary_idnew_standard_conceptcount
ATCNon-standard without mapping3
ATCClassification60
ATCNon-standard with mapping86
ATCClassification229
Cancer ModifierStandard2
CDMStandard113
ICDO3Non-standard with mapping125
ISBTStandard29
ISBT AttributeClassification3
NDCStandard6
NDCNon-standard with mapping483
NDCNon-standard without mapping3745
OMOP ExtensionStandard49
SPLClassification4926

Changes of concept mapping status grouped by target domain

vocabulary_idOld target Domain/StatusNew target Domain/Statuscount
ATCDrugNo mapping9
ATCNew conceptDrug281
ATCNo mappingDevice1
ATCNo mappingDrug195
ATCNo mappingObservation2
Cancer ModifierMeasurementNo mapping5
Cancer ModifierNew conceptMeasurement2
CDMNew conceptMetadata113
ICD10CNConditionNo mapping9
ICDO3ConditionMeasurement251
ICDO3New conceptMeasurement125
ISBTNew conceptDevice29
NDCNew conceptDevice6
NDCNew conceptDrug483
NDCNo mappingDrug3267
OMOP ExtensionNew conceptMeasurement12
OMOP ExtensionNew conceptMeas Value7
OMOP ExtensionNew conceptObservation30
SNOMEDCondition/MeasurementCondition1

New vocabularies added

there were no changes here


If you have any questions, please try to find the answers on http://forums.ohdsi.org. If you can't find it, please ask here: http://forums.ohdsi.org/t/vocabulary-release-questions/6650

Release notes v20210902

02 Sep 21:24
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This guide can provide you more background on how to read the release notes.

What's new

  • We have updated (v 9.2) and replaced the existing vocabulary "PHDSC" (Payer Typology) by its proper name SOPT while leaving all existing concept IDs intact. Please review your ETL logic if you have referenced to this vocabulary_id and replace this reference accordingly with "SOPT".
  • The most recent NDC/SPL content has been used and we have fixed a couple of missing NDC to RxNorm relationships from a previous RxNorm update.
  • One additional clinical test was added to the OMOP extension vocabulary.

Domain changes

there were no changes here

Newly added concepts grouped by Vocabulary_id and Domain

vocabulary_iddomain_idcount
NDCDevice2
NDCDrug1508
OMOP ExtensionMeasurement1
SOPTPayer6
SPLDevice3
SPLDrug1972

Standard concept changes

vocabulary_idold_standard_conceptnew_standard_conceptcount
SOPTStandardNon-standard with mapping1

Newly added concepts and their standard concept status

vocabulary_idnew_standard_conceptcount
NDCStandard2
NDCNon-standard with mapping95
NDCNon-standard without mapping1413
OMOP ExtensionStandard1
SOPTNon-standard with mapping1
SOPTStandard5
SPLClassification1975

Changes of concept mapping status grouped by target domain

vocabulary_idOld target Domain/StatusNew target Domain/Statuscount
NDCNew conceptDevice2
NDCNew conceptDrug95
NDCNo mappingDrug362
OMOP ExtensionNew conceptMeasurement1
SOPTNew conceptPayer6

New vocabularies added

vocabulary_id
SOPT

If you have any questions, please try to find the answers on http://forums.ohdsi.org. If you can't find it, please ask here: http://forums.ohdsi.org/t/vocabulary-release-questions/6650

Release notes v20210818

18 Aug 22:56
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This guide can provide you more background on how to read the release notes.

What's new

  • OncoTree is added to the OMOP Vocabulary. It has relationships to ICDO and mappings to the corresponding standard concepts (ICDO3, SNOMED). The more detailed information is here
  • RxNorm update with Aug-2021 version

Domain changes

there were no changes here

Newly added concepts grouped by Vocabulary_id and Domain

vocabulary_iddomain_idcount
ICDO3Condition6
OncoTreeCondition869
RxNormDrug906

Standard concept changes

vocabulary_idold_standard_conceptnew_standard_conceptcount
ICDO3StandardNon-standard without mapping1
RxNormStandardNon-standard without mapping40
RxNormStandardNon-standard with mapping16
RxNormClassificationNon-standard without mapping16
RxNorm ExtensionStandardNon-standard with mapping30

Newly added concepts and their standard concept status

vocabulary_idnew_standard_conceptcount
ICDO3Standard6
OncoTreeNon-standard without mapping2
OncoTreeNon-standard with mapping875
RelationshipNon-standard without mapping4
RxNormNon-standard with mapping21
RxNormNon-standard without mapping36
RxNormClassification91
RxNormStandard758
VocabularyNon-standard without mapping1

Changes of concept mapping status grouped by target domain

vocabulary_idOld target Domain/StatusNew target Domain/Statuscount
AMISDrugNo mapping2
AMTDrugNo mapping7
ATCDrugNo mapping1
CIELDrugNo mapping1
CTDDrugNo mapping2
DA_FranceDrugNo mapping1
dm+dDrugNo mapping3
GCN_SEQNODrugNo mapping3
GemscriptDrugNo mapping4
GPIDrugNo mapping8
GRRDrugNo mapping1
HCPCSDrugNo mapping1
ICDO3ConditionNo mapping5
ICDO3New conceptCondition6
JMDCDrugNo mapping1
LPD_AustraliaDrugNo mapping1
MeSHDrugNo mapping2
NCCDDrugNo mapping2
NDCDrugNo mapping18
Nebraska LexiconDrugNo mapping4
OncoTreeNew conceptCondition867
RxNormDrugNo mapping49
RxNormNew conceptDrug779
RxNorm ExtensionDrugNo mapping2
SNOMEDDrugNo mapping5
SNOMEDNo mappingDrug553
SPLDrugNo mapping13

New vocabularies added

vocabulary_id
OncoTree

If you have any questions, please try to find the answers on http://forums.ohdsi.org. If you can't find it, please ask here: http://forums.ohdsi.org/t/vocabulary-release-questions/6650

Release notes v20210816

16 Aug 23:59
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Domain changes

there were no changes here

Newly added concepts grouped by Vocabulary_id and Domain

vocabulary_iddomain_idcount
ISBTDevice12
ISBT AttributeObservation2
NDCDevice9
NDCDrug2448
PPIObservation39
SPLDevice2
SPLDrug2239

Standard concept changes

vocabulary_idold_standard_conceptnew_standard_conceptcount
PPIStandardNon-standard with mapping1

Newly added concepts and their standard concept status

vocabulary_idnew_standard_conceptcount
ISBTStandard12
ISBT AttributeClassification2
NDCStandard9
NDCNon-standard with mapping335
NDCNon-standard without mapping2113
PPINon-standard with mapping18
PPIStandard21
SPLClassification2241

Changes of concept mapping status grouped by target domain

vocabulary_idOld target Domain/StatusNew target Domain/Statuscount
ISBTNew conceptDevice12
NDCNew conceptDevice9
NDCNew conceptDrug335
NDCNo mappingDrug2253
PPINew conceptCondition12
PPINew conceptDrug2
PPINew conceptMeas Value4
PPINew conceptObservation21
PPIObservationMeas Value1

New vocabularies added

there were no changes here


If you have any questions, please try to find the answers on http://forums.ohdsi.org. If you can't find it, please ask here: http://forums.ohdsi.org/t/vocabulary-release-questions/6650

Release notes v20210806

06 Aug 22:22
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What's new

  • Gemscript vocabulary: a bug in the v20210713 release has been fixed. What was wrong, but has been fixed now: (i) the actual update to Feb 2021 version didn't happen, so all the new concepts were missing; (ii) all Gemscript concepts were deprecated by mistake. Mappings were not lost, but Devices that don't have mappings to SNOMED were deStandardized.
  • Additionally, we made Devices missing in the current Gemscript source Standard. They're Standard and Valid concepts now, but with valid_end_date < '31-Dec-2099'. This approach was already used in ICD10PCS, ICD9Proc, HCPCS, CPT4 vocabularies in cases where invalidated concepts don't have any relevant replacement or mappings, but still persist in the source, and there might be a need to query them in studies.
  • NDC/SPL regular weekly update.

Domain changes

vocabulary_idold_domain_idnew_domain_idcount
GemscriptDeviceDrug157
GemscriptDrugDevice2962

Newly added concepts grouped by Vocabulary_id and Domain

vocabulary_iddomain_idcount
GemscriptDevice1202
GemscriptDrug862
NDCDevice2
NDCDrug725
SPLDrug972

Standard concept changes

vocabulary_idold_standard_conceptnew_standard_conceptcount
GemscriptNon-standard without mappingStandard64752
GemscriptNon-standard with mappingStandard1

Newly added concepts and their standard concept status

vocabulary_idnew_standard_conceptcount
GemscriptStandard8
GemscriptNon-standard without mapping51
GemscriptNon-standard with mapping2011
NDCStandard2
NDCNon-standard with mapping53
NDCNon-standard without mapping672
SPLClassification972

Changes of concept mapping status grouped by target domain

vocabulary_idOld target Domain/StatusNew target Domain/Statuscount
GemscriptDevice/DrugDevice13
GemscriptDevice/DrugDrug5
GemscriptDrugDevice107
GemscriptNew conceptDevice1202
GemscriptNew conceptDrug811
GemscriptNo mappingDevice72457
GemscriptNo mappingDrug227
NDCNew conceptDevice2
NDCNew conceptDrug53

New vocabularies added

there were no changes here


If you have any questions, please try to find the answers on http://forums.ohdsi.org. If you can't find it, please ask here: http://forums.ohdsi.org/t/vocabulary-release-questions/6650

Release notes v20210727_major

28 Jul 03:36
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What's new

  • This vocabulary release is supposed to be a "major" one and might be used for a while in order to support a stable ETL process.
  • Provider Domain fix: concept naming, hierarchy, and consistency were improved. Some of the concepts (including duplicative) were deStandardized and mapped over to their equivalents. A couple of new grouping concepts were added. Some concepts were moved between the Provider and Visit Domains.
  • Visit Domain small fix: concept naming was improved, a new grouping concept was added.
  • New Visit concepts for the Alternative care sites have been added.
  • Genomic vocabularies reorganization has been done. Standard genomic concepts changed vocabularies from "HGNC" and "OMOP Extension" to "OMOP Genomic", concept codes were changed to OMOPXXXXXX. Concept classes "Gene", "Genomic Variant", "Transrcipt Variant" were replaced to "Genetic Variation", "DNA variant", "RNA Variant" accordingly. Hierarchy direction for standard genomic concepts were changed to (from ancestor to descendants): Genetic Variation -> DNA Variant -> RNA Variant -> Protein Variant. The naming convention was changed - "measurement of" statement was added to emphasize that these concepts are measurements that require values (positive, negative, etc.).
  • Some scales, lab and clinical tests have been introduced into the "OMOP Extension" vocabulary.
  • NDC/SPL regular weekly update.

Domain changes

vocabulary_idold_domain_idnew_domain_idcount
Medicare SpecialtyProviderVisit1
NUCCProviderVisit2

Newly added concepts grouped by Vocabulary_id and Domain

vocabulary_iddomain_idcount
NDCDevice16
NDCDrug1972
OMOP ExtensionMeasurement64
OMOP ExtensionProcedure1
OMOP GenomicMeasurement32810
ProviderProvider2
SPLDrug3244
UB04 Point of OriginVisit1
VisitVisit2

Standard concept changes

vocabulary_idold_standard_conceptnew_standard_conceptcount
ABMSStandardNon-standard with mapping3
ABMSNon-standard with mappingStandard1
HES SpecialtyStandardNon-standard with mapping7
Medicare SpecialtyNon-standard with mappingStandard5
NUCCStandardNon-standard with mapping31
NUCCNon-standard with mappingStandard8
OMOP GenomicNon-standard without mappingStandard316
OMOP GenomicStandardNon-standard with mapping47
SPLClassificationNon-standard with mapping1
SupplierStandardNon-standard without mapping1

Newly added concepts and their standard concept status

vocabulary_idnew_standard_conceptcount
NDCStandard16
NDCNon-standard with mapping89
NDCNon-standard without mapping1883
OMOP ExtensionStandard65
OMOP GenomicStandard32810
ProviderStandard2
SPLClassification3244
UB04 Point of OriginNon-standard with mapping1
VisitStandard2
VocabularyNon-standard without mapping1

Changes of concept mapping status grouped by target domain

vocabulary_idOld target Domain/StatusNew target Domain/Statuscount
CGINo mappingMeasurement87
CIViCNo mappingMeasurement96
JAXNo mappingMeasurement2194
Medicare SpecialtyProviderNo mapping1
Medicare SpecialtyProviderVisit1
NDCNew conceptDevice16
NDCNew conceptDrug89
NDCNo mappingDrug4
NUCCNo mappingProvider2
NUCCNo mappingVisit1
NUCCProviderVisit2
OMOP ExtensionNew conceptMeasurement64
OMOP ExtensionNew conceptProcedure1
OMOP GenomicNew conceptMeasurement32810
OMOP GenomicNo mappingMeasurement316
OncoKBNo mappingMeasurement3175
ProviderNew conceptProvider2
SPLNo mappingDrug1
SupplierProviderNo mapping1
UB04 Point of OriginNew conceptVisit1
UK BiobankProviderNo mapping10
VisitNew conceptVisit2

New vocabularies added

vocabulary_id
OMOP Genomic

If you have any questions, please try to find the answers on http://forums.ohdsi.org. If you can't find it, please ask here: http://forums.ohdsi.org/t/vocabulary-release-questions/6650

Release notes v20210713

14 Jul 01:13
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This guide can provide you more background on how to read the release notes.

What's new

  • dm+d vocabulary has been updated with its 6.3.0 (28 June 2021) version.
  • Gemscript vocabulary has been updated with its Feb 2021 version.
  • The bug in the Gemscript vocabulary has been found. Please check here what was fixed afterward with the v20210806 release.
  • RxNorm Extension has been updated in order to support dm+d/Gemscript refresh.
  • ICD10CM and ICD10 minor mapping fixes (#504, #496, forum_#14268).
  • NDC/SPL regular weekly update.
  • Read vocabulary mappings have been actualized with the current SNOMED version.
  • Read vocabulary Race mappings have been fixed (1-to-many links are cleaned up).
  • ISBT/ISBT Attribute vocabularies have been updated with the 7.52.0 July 2021 version.

Domain changes

vocabulary_idold_domain_idnew_domain_idcount
dm+dDeviceDrug803
dm+dDrugDevice100
ICD10CMConditionObservation1
NDCDrugDevice1
ReadConditionMetadata31
ReadConditionObservation254
ReadConditionProcedure5
ReadConditionType Concept1
ReadMeasurementCondition1
ReadMetadataObservation1
ReadObservationCondition492
ReadObservationMeasurement4444
ReadObservationMetadata31
ReadObservationProcedure322
ReadObservationSpec Anatomic Site2
ReadPlace of ServiceVisit46
ReadProcedureDrug1
ReadProcedureMeasurement238
ReadProcedureMetadata2
ReadProcedureObservation20
ReadRaceObservation20
ReadType ConceptObservation22

Newly added concepts grouped by Vocabulary_id and Domain

vocabulary_iddomain_idcount
dm+dDevice1904
dm+dDrug2076
ISBTDevice87
ISBT AttributeDevice1
ISBT AttributeObservation1
NDCDevice103
NDCDrug6156
RxNorm ExtensionDrug3640
SPLDevice1
SPLDrug7530

Standard concept changes

vocabulary_idold_standard_conceptnew_standard_conceptcount
dm+dStandardNon-standard with mapping4069
dm+dStandardNon-standard without mapping627
dm+dNon-standard without mappingStandard340
dm+dNon-standard with mappingStandard72
GemscriptStandardNon-standard without mapping55084
NDCNon-standard without mappingStandard1
SPLClassificationNon-standard without mapping3

Newly added concepts and their standard concept status

vocabulary_idnew_standard_conceptcount
dm+dNon-standard without mapping269
dm+dNon-standard with mapping1807
dm+dStandard1904
ISBTStandard87
ISBT AttributeClassification2
NDCStandard103
NDCNon-standard without mapping2595
NDCNon-standard with mapping3561
RxNorm ExtensionNon-standard without mapping112
RxNorm ExtensionStandard3528
SPLClassification7531

Changes of concept mapping status grouped by target domain

vocabulary_idOld target Domain/StatusNew target Domain/Statuscount
dm+dDeviceDrug181
dm+dDeviceNo mapping627
dm+dDrugDevice72
dm+dDrugNo mapping5674
dm+dNew conceptDevice1904
dm+dNew conceptDrug1807
dm+dNo mappingDevice340
dm+dNo mappingDrug8
GemscriptDeviceNo mapping62052
GemscriptDevice/DrugDrug76
ICD10ConditionCondition/Measurement8
ICD10CMConditionCondition/Measurement19
ICD10CMConditionObservation1
ISBTNew conceptDevice87
NDCNew conceptDevice103
NDCNew conceptDrug3561
NDCNo mappingDevice1
NDCNo mappingDrug3108
ReadConditionObservation3
ReadDrugDrug/Observation2
ReadDrugDrug/Procedure33
ReadDrug/ObservationDrug13
ReadDrug/ProcedureDrug177
ReadNo mappingCondition325
ReadNo mappingDevice1
ReadNo mappingDrug1
ReadNo mappingMeasurement5
ReadNo mappingObservation280
ReadNo mappingProcedure60
ReadNo mappingSpec Anatomic Site2
ReadProcedureDrug7
RxNorm ExtensionNew conceptDrug3528

New vocabularies added

there were no changes here


If you have any questions, please try to find the answers on http://forums.ohdsi.org. If you can't find it, please ask here: http://forums.ohdsi.org/t/vocabulary-release-questions/6650

Release notes v20210617

17 Jun 20:37
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Domain changes

vocabulary_idold_domain_idnew_domain_idcount
GRRDrugDevice2

Newly added concepts grouped by Vocabulary_id and Domain

vocabulary_iddomain_idcount
GRRDevice1789
GRRDrug5047
RxNorm ExtensionDrug3134

Standard concept changes

vocabulary_idold_standard_conceptnew_standard_conceptcount
GRRNon-standard without mappingStandard2

Newly added concepts and their standard concept status

vocabulary_idnew_standard_conceptcount
GRRStandard1789
GRRNon-standard with mapping2386
GRRNon-standard without mapping2661
RxNorm ExtensionNon-standard without mapping133
RxNorm ExtensionStandard3001

Changes of concept mapping status grouped by target domain

vocabulary_idOld target Domain/StatusNew target Domain/Statuscount
GRRNew conceptDevice1789
GRRNew conceptDrug2386
GRRNo mappingDevice2
GRRNo mappingDrug127
RxNorm ExtensionNew conceptDrug3001

New vocabularies added

there were no changes here


If you have any questions, please try to find the answers on http://forums.ohdsi.org. If you can't find it, please ask here: http://forums.ohdsi.org/t/vocabulary-release-questions/6650

Release notes v20210608

08 Jun 21:31
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What's new

  • RxNorm vocabulary has been updated with its May 2021 release.
  • "Multiple Ingredients" (MINs) concept entries have been added to the RxNorm vocabulary and the respective concept class introduced. MINs are non-Standard concepts and do not participate in the hierarchy. They are mapped over to the respective Ingredients by "Maps to" relationships.
  • The LOINC vocabulary has been updated with its 2.69 Dec 2020 version (main source) as well as the May 20 2021 prelease data. (prerelease source).
  • LOINC COVID-related lab tests are rolled up to the respective parent concept of the "Measurement of Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)" hierarchy.
  • Deprecated LOINC concepts (not replaced by LOINC with new concepts) are mapped over to the respective Standard concepts in SNOMED and other vocabularies.
  • ISBT vocabulary has been updated with its 7.51.1, May 2021 version.

Domain changes

vocabulary_idold_domain_idnew_domain_idcount
LOINCMeasurementObservation8
LOINCObservationMeasurement1

Newly added concepts grouped by Vocabulary_id and Domain

vocabulary_iddomain_idcount
ISBTDevice32
LOINCMeasurement1761
LOINCMeas Value328
LOINCObservation1325
RxNormDrug4465

Standard concept changes

vocabulary_idold_standard_conceptnew_standard_conceptcount
LOINCClassificationNon-standard without mapping60
LOINCStandardNon-standard with mapping24
LOINCStandardNon-standard without mapping5
LOINCNon-standard without mappingStandard3
LOINCNon-standard without mappingClassification1
RxNorm ExtensionStandardNon-standard with mapping22

Newly added concepts and their standard concept status

vocabulary_idnew_standard_conceptcount
Concept ClassNon-standard without mapping1
ISBTStandard32
LOINCClassification875
LOINCNon-standard without mapping895
LOINCStandard1644
RxNormClassification31
RxNormStandard303
RxNormNon-standard without mapping666
RxNormNon-standard with mapping9493

Changes of concept mapping status grouped by target domain

vocabulary_idOld target Domain/StatusNew target Domain/Statuscount
AMTDrugNo mapping1
ATCDrugNo mapping2
CTDDrugNo mapping3
dm+dDrugNo mapping3
GemscriptDrugNo mapping4
GRRDrugNo mapping8
HCPCSDrugNo mapping1
HemOncDrugNo mapping1
ISBTNew conceptDevice32
LOINCMeasurementNo mapping3
LOINCMeasurementObservation6
LOINCMeasurementProcedure2
LOINCNew conceptMeasurement996
LOINCNew conceptMeas Value328
LOINCNew conceptObservation320
LOINCNo mappingMeasurement378
LOINCNo mappingProcedure2
LOINCObservationNo mapping2
LPD_AustraliaDrugNo mapping1
LPD_BelgiumDrugNo mapping3
RxNormNew conceptDrug3768
RxNormNo mappingDrug1
SNOMEDMeasurementNo mapping18
SNOMEDNo mappingDrug10

New vocabularies added

there were no changes here


If you have any questions, please try to find the answers on http://forums.ohdsi.org. If you can't find it, please ask here: http://forums.ohdsi.org/t/vocabulary-release-questions/6650