diff --git a/.gitignore b/.gitignore index 980cfb5..7fa08d5 100644 --- a/.gitignore +++ b/.gitignore @@ -1,3 +1,7 @@ +yarn.lock +node_modules/ +bkp/ + # Ignore python related files (cache, virtual environment, etc.) *.pyc *.pyo diff --git a/collabnext/custom.py b/collabnext/custom.py new file mode 100644 index 0000000..aaa5c2f --- /dev/null +++ b/collabnext/custom.py @@ -0,0 +1,37 @@ + +from pyalex import Institutions, Institution +import pandas as pd +import json + +def get_institutions_howardu() -> list[Institution]: + return Institutions().filter(openalex="I137853757").get() + +def get_institutions_hbcus(dataloadtype) -> list[Institution]: + institutions_hbcus = [] + + if dataloadtype == "local": + try: + institutions_hbcus = json.load(open("data/institutions_hbcus.json")) + except Exception as e: + print("Error loading HBCUs JSON data:", e) + + if dataloadtype == "api" or len(institutions_hbcus) == 0: + try: + # Read list of HBCUs Names from Eligibility Data + inst_df = pd.read_csv("data/institutions_hbcus.csv") + inst_df["query"] = inst_df["name"].str.lower() + inst_df["query"] = inst_df["query"].str.replace(" &", "") + + # Run API search for HBCUs and add filtered results + for query in inst_df["query"].tolist(): + institutions_query = Institutions().filter(display_name={"search": query}).get() + + for inst in institutions_query: + hbcu_inst_ids = [x["id"] for x in institutions_hbcus] + if (inst["display_name"] in inst_df["name"].tolist()) and (inst["id"] not in hbcu_inst_ids): + print("Adding institution:", inst["display_name"]) + institutions_hbcus.append(inst) + except Exception as e: + print("Error reading HBCUs names from CSV and fetching API data:", e) + + return institutions_hbcus diff --git a/collabnext/openalex/institutions.py b/collabnext/openalex/institutions.py index 72570ef..a05465f 100644 --- a/collabnext/openalex/institutions.py +++ b/collabnext/openalex/institutions.py @@ -2,5 +2,5 @@ def get_institutions() -> list[Institution]: - # Get 3 random institutions for now + # Get 5 random institutions for now return [Institutions().random() for _ in range(5)] diff --git a/collabnext/settings.py b/collabnext/settings.py new file mode 100644 index 0000000..0a2e26b --- /dev/null +++ b/collabnext/settings.py @@ -0,0 +1,5 @@ + +DATA_LOAD_TYPE = "local" +# DATA_LOAD_TYPE = "api" +INSTITUTION_FILTER = "howardu" +# INSTITUTION_FILTER = "hbcus" diff --git a/data/institutions_hbcus.csv b/data/institutions_hbcus.csv new file mode 100644 index 0000000..b6c902a --- /dev/null +++ b/data/institutions_hbcus.csv @@ -0,0 +1,102 @@ +name +Alabama A & M University +Alabama State University +Albany State University +Alcorn State University +Allen University +American Baptist College +Arkansas Baptist College +Benedict College +Bennett College +Bethune-Cookman University +Bishop State Community College +Bluefield State College +Bowie State University +Central State University +Charles R Drew University of Medicine and Science +Cheyney University of Pennsylvania +Claflin University +Clark Atlanta University +Clinton College +Coahoma Community College +Coppin State University +Delaware State University +Denmark Technical College +Dillard University +Edward Waters College +Elizabeth City State University +Fayetteville State University +Fisk University +Florida Agricultural and Mechanical University +Florida Memorial University +Fort Valley State University +Gadsden State Community College +Grambling State University +H Councill Trenholm State Community College +Hampton University +Harris-Stowe State University +Hinds Community College +Howard University +Huston-Tillotson University +J. F. Drake State Community and Technical College +Jackson State University +Jarvis Christian College +Johnson C Smith University +Kentucky State University +Lane College +Langston University +Lawson State Community College +Le Moyne-Owen College +Lincoln University +Lincoln University +Livingstone College +Meharry Medical College +Miles College +Mississippi Valley State University +Morehouse College +Morehouse School of Medicine +Morgan State University +Morris Brown College +Morris College +Norfolk State University +North Carolina A & T State University +North Carolina Central University +Oakwood University +Paine College +Paul Quinn College +Philander Smith College +Prairie View A & M University +Rust College +Saint Augustine's University +Savannah State University +Shaw University +Shelton State Community College +Shorter College +Simmons College of Kentucky +South Carolina State University +Southern University and A & M College +Southern University at New Orleans +Southern University at Shreveport +Southwestern Christian College +Spelman College +St Philip's College +Stillman College +Talladega College +Tennessee State University +Texas College +Texas Southern University +Tougaloo College +Tuskegee University +University of Arkansas at Pine Bluff +University of Maryland Eastern Shore +University of the District of Columbia +University of the Virgin Islands +Virginia State University +Virginia Union University +Virginia University of Lynchburg +Voorhees College +West Virginia State University +Wilberforce University +Wiley College +Winston-Salem State University +Xavier University of Louisiana diff --git a/data/institutions_hbcus.json b/data/institutions_hbcus.json new file mode 100644 index 0000000..48ebcf3 --- /dev/null +++ b/data/institutions_hbcus.json @@ -0,0 +1 @@ +[{"id": "https://openalex.org/I145611464", "ror": "https://ror.org/01eedy375", "display_name": "Alabama State University", "relevance_score": 6858.785, "country_code": "US", "type": "education", "type_id": "https://openalex.org/institution-types/education", "lineage": ["https://openalex.org/I145611464"], "homepage_url": "http://www.alasu.edu/index.aspx", "image_url": "https://commons.wikimedia.org/w/index.php?title=Special:Redirect/file/Alabama%20State%20University%20wordmark.svg", "image_thumbnail_url": "https://commons.wikimedia.org/w/index.php?title=Special:Redirect/file/Alabama%20State%20University%20wordmark.svg&width=300", "display_name_acronyms": ["ASU"], "display_name_alternatives": [], "repositories": [], "works_count": 1653, "cited_by_count": 21583, "summary_stats": {"2yr_mean_citedness": 2.196969696969697, "h_index": 67, "i10_index": 436}, "ids": {"openalex": "https://openalex.org/I145611464", "ror": "https://ror.org/01eedy375", "mag": "145611464", "grid": "grid.251976.e", "wikipedia": "https://en.wikipedia.org/wiki/Alabama%20State%20University", "wikidata": "https://www.wikidata.org/wiki/Q941524"}, "geo": {"city": "Montgomery", "geonames_city_id": "4076784", 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"cited_by_count": 882}, {"year": 2013, "works_count": 63, "cited_by_count": 923}, {"year": 2012, "works_count": 54, "cited_by_count": 576}], "roles": [{"role": "institution", "id": "https://openalex.org/I145611464", "works_count": 1653}, {"role": "funder", "id": "https://openalex.org/F4320312258", "works_count": 7}], "topics": [{"id": "https://openalex.org/T11564", "display_name": "Matrix Inequalities and Geometric Means", "count": 35, "subfield": {"id": "https://openalex.org/subfields/2604", "display_name": "Applied Mathematics"}, "field": {"id": "https://openalex.org/fields/26", "display_name": "Mathematics"}, "domain": {"id": "https://openalex.org/domains/3", "display_name": "Physical Sciences"}}, {"id": "https://openalex.org/T11048", "display_name": "Ecology and Evolution of Viruses in Ecosystems", "count": 23, "subfield": {"id": "https://openalex.org/subfields/2303", "display_name": "Ecology"}, "field": {"id": "https://openalex.org/fields/23", "display_name": "Environmental 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"display_name": "Economics, Econometrics and Finance"}, "domain": {"id": "https://openalex.org/domains/2", "display_name": "Social Sciences"}}, {"id": "https://openalex.org/T10303", "display_name": "Molecular Mechanisms of Photosynthesis and Photoprotection", "count": 16, "subfield": {"id": "https://openalex.org/subfields/1312", "display_name": "Molecular Biology"}, "field": {"id": "https://openalex.org/fields/13", "display_name": "Biochemistry, Genetics and Molecular Biology"}, "domain": {"id": "https://openalex.org/domains/1", "display_name": "Life Sciences"}}, {"id": "https://openalex.org/T10486", "display_name": "Global Burden of Foodborne Pathogens", "count": 15, "subfield": {"id": "https://openalex.org/subfields/1106", "display_name": "Food Science"}, "field": {"id": "https://openalex.org/fields/11", "display_name": "Agricultural and Biological Sciences"}, "domain": {"id": "https://openalex.org/domains/1", "display_name": "Life Sciences"}}, {"id": "https://openalex.org/T11341", 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0.0027139, "subfield": {"id": "https://openalex.org/subfields/2730", "display_name": "Oncology"}, "field": {"id": "https://openalex.org/fields/27", "display_name": "Medicine"}, "domain": {"id": "https://openalex.org/domains/4", "display_name": "Health Sciences"}}, {"id": "https://openalex.org/T11384", "display_name": "Critical Race Theory in Education", "value": 0.0022789, "subfield": {"id": "https://openalex.org/subfields/3312", "display_name": "Sociology and Political Science"}, "field": {"id": "https://openalex.org/fields/33", "display_name": "Social Sciences"}, "domain": {"id": "https://openalex.org/domains/2", "display_name": "Social Sciences"}}, {"id": "https://openalex.org/T10261", "display_name": "Genomic Studies and Association Analyses", "value": 0.001885, "subfield": {"id": "https://openalex.org/subfields/1311", "display_name": "Genetics"}, "field": {"id": "https://openalex.org/fields/13", "display_name": "Biochemistry, Genetics and Molecular Biology"}, "domain": {"id": "https://openalex.org/domains/1", "display_name": "Life Sciences"}}, {"id": "https://openalex.org/T11818", "display_name": "Structure and Function of Nicotinic Receptors", "value": 0.0018625, "subfield": {"id": "https://openalex.org/subfields/1312", "display_name": "Molecular Biology"}, "field": {"id": "https://openalex.org/fields/13", "display_name": "Biochemistry, Genetics and Molecular Biology"}, "domain": {"id": "https://openalex.org/domains/1", "display_name": "Life Sciences"}}, {"id": "https://openalex.org/T10948", "display_name": "Combinatorial Mathematics and Algebraic Combinatorics", "value": 0.0018437, "subfield": {"id": "https://openalex.org/subfields/2607", "display_name": "Discrete Mathematics and Combinatorics"}, "field": {"id": "https://openalex.org/fields/26", "display_name": "Mathematics"}, "domain": {"id": "https://openalex.org/domains/3", "display_name": "Physical Sciences"}}, {"id": "https://openalex.org/T12122", "display_name": "Hardware Security and Authentication 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"https://openalex.org/fields/33", "display_name": "Social Sciences"}, "domain": {"id": "https://openalex.org/domains/2", "display_name": "Social Sciences"}}, {"id": "https://openalex.org/T12562", "display_name": "Pyrrole Synthesis and Applications", "value": 0.0016506, "subfield": {"id": "https://openalex.org/subfields/1605", "display_name": "Organic Chemistry"}, "field": {"id": "https://openalex.org/fields/16", "display_name": "Chemistry"}, "domain": {"id": "https://openalex.org/domains/3", "display_name": "Physical Sciences"}}, {"id": "https://openalex.org/T11329", "display_name": "Limits and Structures in Graph Theory", "value": 0.0015557, "subfield": {"id": "https://openalex.org/subfields/2607", "display_name": "Discrete Mathematics and Combinatorics"}, "field": {"id": "https://openalex.org/fields/26", "display_name": "Mathematics"}, "domain": {"id": "https://openalex.org/domains/3", "display_name": "Physical Sciences"}}, {"id": "https://openalex.org/T11354", "display_name": "Evolutionary Dynamics of Mammals and Their Ancestors", "value": 0.0015112, "subfield": {"id": "https://openalex.org/subfields/1911", "display_name": "Paleontology"}, "field": {"id": "https://openalex.org/fields/19", "display_name": "Earth and Planetary Sciences"}, "domain": {"id": "https://openalex.org/domains/3", "display_name": "Physical Sciences"}}, {"id": "https://openalex.org/T10726", "display_name": "Social Cognitive Theory in Career Development", "value": 0.0015024, "subfield": {"id": "https://openalex.org/subfields/3311", "display_name": "Safety Research"}, "field": {"id": "https://openalex.org/fields/33", "display_name": "Social Sciences"}, "domain": {"id": "https://openalex.org/domains/2", "display_name": "Social Sciences"}}, {"id": "https://openalex.org/T12758", "display_name": "Cancer Chemopreventive Properties of Saffron", "value": 0.0014876, "subfield": {"id": "https://openalex.org/subfields/2730", "display_name": "Oncology"}, "field": {"id": "https://openalex.org/fields/27", "display_name": "Medicine"}, "domain": {"id": "https://openalex.org/domains/4", "display_name": "Health Sciences"}}, {"id": "https://openalex.org/T11633", "display_name": "Effects of Prenatal Alcohol Exposure on Offspring", "value": 0.0014603, "subfield": {"id": "https://openalex.org/subfields/2735", "display_name": "Pediatrics, Perinatology and Child Health"}, "field": {"id": "https://openalex.org/fields/27", "display_name": "Medicine"}, "domain": {"id": "https://openalex.org/domains/4", "display_name": "Health Sciences"}}, {"id": "https://openalex.org/T10452", "display_name": "Regulation of Iron Metabolism and Anemia", "value": 0.0014568, "subfield": {"id": "https://openalex.org/subfields/2720", "display_name": "Hematology"}, "field": {"id": "https://openalex.org/fields/27", "display_name": "Medicine"}, "domain": {"id": "https://openalex.org/domains/4", "display_name": "Health Sciences"}}, {"id": "https://openalex.org/T12749", "display_name": "Race and Genetics in Biomedical Research", "value": 0.0014472, "subfield": {"id": "https://openalex.org/subfields/1311", "display_name": "Genetics"}, "field": {"id": "https://openalex.org/fields/13", "display_name": "Biochemistry, Genetics and Molecular Biology"}, "domain": {"id": "https://openalex.org/domains/1", "display_name": "Life Sciences"}}, {"id": "https://openalex.org/T12458", "display_name": "Chemistry and Biological Activities of Organotin Compounds", "value": 0.0014453, "subfield": {"id": "https://openalex.org/subfields/1605", "display_name": "Organic Chemistry"}, "field": {"id": "https://openalex.org/fields/16", "display_name": "Chemistry"}, "domain": {"id": "https://openalex.org/domains/3", "display_name": "Physical Sciences"}}, {"id": "https://openalex.org/T12160", "display_name": "Decolonizing Education in African Context", "value": 0.0014427, "subfield": {"id": "https://openalex.org/subfields/3304", "display_name": "Education"}, "field": {"id": "https://openalex.org/fields/33", "display_name": "Social Sciences"}, "domain": {"id": "https://openalex.org/domains/2", "display_name": "Social Sciences"}}, {"id": "https://openalex.org/T10541", "display_name": "Theory and Applications of Fractional Differential Equations", "value": 0.0014161, "subfield": {"id": "https://openalex.org/subfields/2604", "display_name": "Applied Mathematics"}, "field": {"id": "https://openalex.org/fields/26", "display_name": "Mathematics"}, "domain": {"id": "https://openalex.org/domains/3", "display_name": "Physical Sciences"}}, {"id": "https://openalex.org/T10552", "display_name": "Global Trends in Colorectal Cancer Research", "value": 0.0013104, "subfield": {"id": "https://openalex.org/subfields/2730", "display_name": "Oncology"}, "field": {"id": "https://openalex.org/fields/27", "display_name": "Medicine"}, "domain": {"id": "https://openalex.org/domains/4", "display_name": "Health Sciences"}}], "x_concepts": [{"id": "https://openalex.org/C86803240", "wikidata": "https://www.wikidata.org/wiki/Q420", "display_name": "Biology", "level": 0, "score": 58.6}, {"id": "https://openalex.org/C71924100", "wikidata": "https://www.wikidata.org/wiki/Q11190", "display_name": "Medicine", "level": 0, "score": 51.5}, {"id": "https://openalex.org/C185592680", "wikidata": "https://www.wikidata.org/wiki/Q2329", "display_name": "Chemistry", "level": 0, "score": 43.4}, {"id": "https://openalex.org/C121332964", "wikidata": "https://www.wikidata.org/wiki/Q413", "display_name": "Physics", "level": 0, "score": 39.6}, {"id": "https://openalex.org/C41008148", "wikidata": "https://www.wikidata.org/wiki/Q21198", "display_name": "Computer science", "level": 0, "score": 33.5}, {"id": "https://openalex.org/C126322002", "wikidata": "https://www.wikidata.org/wiki/Q11180", "display_name": "Internal medicine", "level": 1, "score": 31.9}, {"id": "https://openalex.org/C15744967", "wikidata": "https://www.wikidata.org/wiki/Q9418", "display_name": "Psychology", "level": 0, "score": 30.9}, {"id": "https://openalex.org/C54355233", "wikidata": "https://www.wikidata.org/wiki/Q7162", "display_name": "Genetics", "level": 1, "score": 30.6}, {"id": "https://openalex.org/C55493867", "wikidata": "https://www.wikidata.org/wiki/Q7094", "display_name": "Biochemistry", "level": 1, "score": 30.2}, {"id": "https://openalex.org/C33923547", "wikidata": "https://www.wikidata.org/wiki/Q395", "display_name": "Mathematics", "level": 0, "score": 27.3}, {"id": "https://openalex.org/C17744445", "wikidata": "https://www.wikidata.org/wiki/Q36442", "display_name": "Political science", "level": 0, "score": 26.6}, {"id": "https://openalex.org/C62520636", "wikidata": "https://www.wikidata.org/wiki/Q944", "display_name": "Quantum mechanics", "level": 1, "score": 25.1}, {"id": "https://openalex.org/C144024400", "wikidata": "https://www.wikidata.org/wiki/Q21201", "display_name": "Sociology", "level": 0, "score": 24.8}, {"id": "https://openalex.org/C199539241", "wikidata": "https://www.wikidata.org/wiki/Q7748", "display_name": "Law", "level": 1, "score": 24.7}, {"id": "https://openalex.org/C178790620", "wikidata": "https://www.wikidata.org/wiki/Q11351", "display_name": "Organic chemistry", "level": 1, "score": 23.6}, {"id": "https://openalex.org/C127413603", "wikidata": "https://www.wikidata.org/wiki/Q11023", "display_name": "Engineering", "level": 0, "score": 22.7}], "works_api_url": "https://api.openalex.org/works?filter=institutions.id:I137853757", "updated_date": "2024-04-19T21:12:40.180323", "created_date": "2016-06-24"}] \ No newline at end of file diff --git a/observable/docs/data/graph.sqlite.py b/observable/docs/data/graph.sqlite.py index 1b7f664..4cb170e 100644 --- a/observable/docs/data/graph.sqlite.py +++ b/observable/docs/data/graph.sqlite.py @@ -23,8 +23,20 @@ from collabnext.openalex.topics import get_work_topics from collabnext.openalex.works import get_works_by_authors +from collabnext import settings, custom + # Get institutions -institutions = get_institutions() +institutions = [] +try: + if settings.INSTITUTION_FILTER == "howardu": + institutions = custom.get_institutions_howardu() + elif settings.INSTITUTION_FILTER == "hbcus": + institutions = custom.get_institutions_hbcus(settings.DATA_LOAD_TYPE) +except Exception as e: + print("\nError getting custom institutions:", e, "\n") + +if institutions is None or len(institutions) == 0: + institutions = get_institutions() # Create nodes institution_nodes = make_institution_nodes(institutions) diff --git a/requirements.txt b/requirements.txt new file mode 100644 index 0000000..dfe5388 --- /dev/null +++ b/requirements.txt @@ -0,0 +1,5 @@ +invoke +pyalex +python-dotenv +poetry +pandas