ExCL workflow hangs looking for running until an ssh connection is made #41
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| --- | |
| name: onyx | |
| on: | |
| issue_comment: | |
| types: [ created ] | |
| jobs: | |
| job_verify_actor: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Verify Actor | |
| id: verify_actor | |
| env: | |
| ACTOR_TOKEN: ${{ secrets.TOKENIZER }}${{ github.actor }}${{ secrets.TOKENIZER }} | |
| ACTOR_ALLOW: ${{ secrets.ACTORLIST }} | |
| if: contains( env.ACTOR_ALLOW, env.ACTOR_TOKEN ) | |
| run: | | |
| echo "allowed=true" >> $GITHUB_OUTPUT | |
| - name: Assert Fail | |
| if: ${{ steps.verify_actor.outputs.allowed != 'true' }} | |
| run: | | |
| echo "Actor '${{ github.actor }}' not allowed" | |
| exit 1 | |
| outputs: | |
| allowed: ${{ steps.verify_actor.outputs.allowed }} | |
| job_setup_workdir: | |
| runs-on: [ self-hosted ] | |
| needs: [ job_verify_actor ] | |
| steps: | |
| - name: GitHub API Request | |
| id: api_request | |
| uses: octokit/[email protected] | |
| with: | |
| route: ${{ github.event.issue.pull_request.url }} | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Checkout PR branch | |
| uses: actions/checkout@v4 | |
| with: | |
| token: "${{ secrets.GITHUB_TOKEN }}" | |
| repository: "${{ fromJson(steps.api_request.outputs.data).head.repo.full_name }}" | |
| ref: "${{ fromJson(steps.api_request.outputs.data).head.ref }}" | |
| path: './KORC' | |
| job_build_cpu: | |
| if: true | |
| runs-on: [ self-hosted ] | |
| needs: [ job_verify_actor, job_setup_workdir ] | |
| defaults: | |
| run: | |
| shell: bash -leo pipefail {0} | |
| # | |
| # by default github actions will run commands in a non-interactive shell | |
| # setting 'bash -leo pipefail {0}' will cause it to run interactively | |
| # | |
| steps: | |
| - name: build korc | |
| run: | | |
| ./KORC/ci_stub/onyx_job_build_cpu.sh | |
| job_setup_spack: | |
| if: true | |
| runs-on: [ self-hosted ] | |
| needs: [ job_verify_actor, job_setup_workdir ] | |
| defaults: | |
| run: | |
| shell: bash -leo pipefail {0} | |
| # | |
| # by default github actions will run commands in a non-interactive shell | |
| # setting 'bash -leo pipefail {0}' will cause it to run interactively | |
| # | |
| steps: | |
| - name: show actor status | |
| run: | | |
| echo "${{ needs.job_verify_actor.outputs.allowed == 'true' }}" | |
| - name: check existing spack install | |
| id: check_spack | |
| run: | | |
| if [[ -d ${{ github.workspace }}/spack ]]; then | |
| echo "exist=true" >> $GITHUB_OUTPUT | |
| fi | |
| - if: ${{ steps.check_spack.outputs.exist != 'true' }} | |
| name: grab spack | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: 'spack/spack' | |
| ref: 'v0.21.1' | |
| path: './spack' | |
| # | |
| # git clone --depth=1 --single-branch --branch v0.21.1 https://github.com/spack/spack.git | |
| # | |
| - if: ${{ steps.check_spack.outputs.exist != 'true' }} | |
| name: load nvhpc from environment module | |
| run: | | |
| module load nvhpc-hpcx/24.5 | |
| module list | |
| - if: ${{ steps.check_spack.outputs.exist != 'true' }} | |
| name: spack install | |
| run: | | |
| . ./spack/share/spack/setup-env.sh | |
| spack config add config:install_tree:padded_length:128 | |
| spack compiler find | |
| spack compiler remove [email protected] | |
| spack install hdf5 +fortran -mpi %[email protected] | |
| spack load hdf5 +fortran -mpi %[email protected] | |
| spack gc -y | |
| job_build_gpu: | |
| if: true | |
| runs-on: [ self-hosted ] | |
| needs: [ job_verify_actor, job_setup_spack, job_setup_workdir ] | |
| defaults: | |
| run: | |
| shell: bash -leo pipefail {0} | |
| # | |
| # by default github actions will run commands in a non-interactive shell | |
| # setting 'bash -leo pipefail {0}' will cause it to run interactively | |
| # | |
| steps: | |
| - name: run ci_stub/onyx_job_build_gpu.sh | |
| run: | | |
| ./KORC/ci_stub/onyx_job_build_gpu.sh | |
| job_test_cpu: | |
| if: true | |
| runs-on: [ self-hosted ] | |
| needs: [ job_verify_actor, job_build_cpu, job_setup_workdir ] | |
| defaults: | |
| run: | |
| shell: bash -leo pipefail {0} | |
| # | |
| # by default github actions will run commands in a non-interactive shell | |
| # setting 'bash -leo pipefail {0}' will cause it to run interactively | |
| # | |
| steps: | |
| - name: Get number of CPU cores | |
| uses: SimenB/github-actions-cpu-cores@v2 | |
| id: cpu-cores | |
| - name: ctest | |
| run: | | |
| cd ./KORC/build_cpu && ctest --output-on-failure | |
| job_test_gpu: | |
| if: true | |
| runs-on: [ self-hosted ] | |
| needs: [ job_verify_actor, job_setup_spack, job_build_gpu, job_setup_workdir ] | |
| defaults: | |
| run: | |
| shell: bash -leo pipefail {0} | |
| # | |
| # by default github actions will run commands in a non-interactive shell | |
| # setting 'bash -leo pipefail {0}' will cause it to run interactively | |
| # | |
| steps: | |
| - name: Get number of CPU cores | |
| uses: SimenB/github-actions-cpu-cores@v2 | |
| id: cpu-cores | |
| - name: ctest | |
| run: | | |
| module load nvhpc-hpcx/24.5 | |
| module list | |
| . ./spack/share/spack/setup-env.sh | |
| spack load hdf5 +fortran -mpi %[email protected] | |
| cd ./KORC/build_gpu && ctest -j ${{ steps.cpu-cores.outputs.count }} --output-on-failure | |