Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Problems encountered when CQL3D and AORSA are used together #51

Open
yang5891 opened this issue Dec 17, 2024 · 3 comments
Open

Problems encountered when CQL3D and AORSA are used together #51

yang5891 opened this issue Dec 17, 2024 · 3 comments

Comments

@yang5891
Copy link

Hello professor, now I want to use the CQL3D program with the AORSA program in combination. Is it just necessary to put the nc file in the run folder here? But I get an error when I put the nc file generated by CQL3D into the aorsa2d.in folder where I run.

The following error message is displayed:
before ncopn netcdfnm=
cql.nc

after ncopn ncid= 65536 istatus 0
before ncdid xdim
after inq_dimid xdim= 1 istatus 0
after inq_dimid ydim= 2 istatus 0
after inq_dimid rdim= 844085952 istatus 0
after inq_dimid kdim= 28 istatus 0
proc_cql3d_op: after nf90_inq_dimid nt_id = 35 istatus = 0
proc_cql3d_op: after inquire dimenstion, # of t steps = 4 istatus=
0
ncdiminq: ncid 65536: NetCDF: Invalid dimension ID or name

Here's how I should fix it？
@jcwright77
Copy link
Contributor

jcwright77 commented Dec 17, 2024 via email

@yang5891
Copy link
Author

we don't provide that degree of support for aorsa. you should establish a collaboration with those who do that work
On 2024-12-17 06:49, yang5891 wrote: Hello professor, now I want to use the CQL3D program with the AORSA program in combination. Is it just necessary to put the nc file in the run folder here? But I get an error when I put the nc file generated by CQL3D into the aorsa2d.in folder where I run. The following error message is displayed: before ncopn netcdfnm= cql.nc after ncopn ncid= 65536 istatus 0 before ncdid xdim after inq_dimid xdim= 1 istatus 0 after inq_dimid ydim= 2 istatus 0 after inq_dimid rdim= 844085952 istatus 0 after inq_dimid kdim= 28 istatus 0 proc_cql3d_op: after nf90_inq_dimid nt_id = 35 istatus = 0 proc_cql3d_op: after inquire dimenstion, # of t steps = 4 istatus= 0 ncdiminq: ncid 65536: NetCDF: Invalid dimension ID or name Here's how I should fix it？ -- Reply to this email directly, view it on GitHub [1], or unsubscribe [2]. You are receiving this because you are subscribed to this thread.Message ID: @.***>
-- -john Principal Research Scientist John Wright Office 617-253-9612 zoom: https://mit.zoom.us/my/jcwright Links: ------ [1] #51 [2] https://github.com/notifications/unsubscribe-auth/AB7SLTPHTRLKVTYP46X3P6L2GAFUHAVCNFSM6AAAAABTYHUOYOVHI2DSMVQWIX3LMV43ASLTON2WKOZSG42DINZSGE2DMNI --=_5df8434a9ade3c77d31336433ce728cc Content-Transfer-Encoding: quoted-printable Content-Type: text/html; charset=UTF-8 <meta http-equiv=3D"Content-Type" content=3D"text/html; charset= =3DUTF-8" /><body style=3D'font-size: 10pt; font-family: Verdana,Gen= eva,sans-serif'>

we don't provide that degree of support for aorsa. you should establish = a collaboration with those who do that work

<p id=3D"reply-intro">On 2024-12-17 06:49, yang5891 wrote:

<blockquote type=3D"cite" style=3D"padding: 0 0.4em; border-left: #1010ff 2= px solid; margin: 0"> <div id=3D"replybody1">


<p dir=3D"auto">Hello professor, now I want to use the CQL3D program with t= he AORSA program in combination. Is it just necessary to put the nc file in= the run folder here? But I get an error when I put the nc file generated b= y CQL3D into the aorsa2d.in folder where I run.

<p dir=3D"auto">The following error message is displayed:
before ncopn= netcdfnm=3D
cql.nc

<p dir=3D"auto">after ncopn ncid=3D 65536 istatus 0
before ncdid xdim<= br />after inq_dimid xdim=3D 1 istatus 0
after inq_dimid ydim=3D 2 ist= atus 0
after inq_dimid rdim=3D 844085952 istatus 0
after inq_dimi= d kdim=3D 28 istatus 0
proc_cql3d_op: after nf90_inq_dimid nt_id =3D 3= 5 istatus =3D 0
proc_cql3d_op: after inquire dimenstion, # of t steps = =3D 4 istatus=3D
0
ncdiminq: ncid 65536: NetCDF: Invalid dimensio= n ID or name

<p dir=3D"auto">Here's how I should fix it=EF=BC=9F

<p style=3D"font-size: small; -webkit-text-size-adjust: none; color: #666;"=
—
Reply to this email directly, <a href=3D"https://github.com/O=
RNL-Fusion/aorsa/issues/51" target=3D"_blank" rel=3D"noopener noreferrer">v= iew it on GitHub, or <a href=3D"https://github.com/notifications/unsubs= cribe-auth/AB7SLTPHTRLKVTYP46X3P6L2GAFUHAVCNFSM6AAAAABTYHUOYOVHI2DSMVQWIX3L= MV43ASLTON2WKOZSG42DINZSGE2DMNI" target=3D"_blank" rel=3D"noopener noreferr= er">unsubscribe.
You are receiving this because you are subscribed= to this thread.<img src=3D"https://github.com/notifications/beacon/AB7SLTP= AQXX6CXDFE672VIL2GAFUHA5CNFSM6AAAAABTYHUOYOWGG33NNVSW45C7OR4XAZNFJFZXG5LFVJ= RW63LNMVXHIX3JMTHKHGJAHE.gif" width=3D"1" height=3D"1" /><span style=3D"col= or: transparent; font-size: 0; display: none; visibility: hidden; overflow:= hidden; opacity: 0; width: 0px; height: 0px; max-width: 0; max-height: 0; = mso-hide: all;">Message ID: </issues/51<sp= an>@github.com>


<div id=3D"signature">--
<div class=3D"pre" style=3D"margin: 0; padding: 0; font-family: monospace">= -john
Principal Research Scientist John Wright
Office 617-253-96= 12
zoom: <a href=3D"https://mit.zoom.us/my/jcwright" target=3D"_blank"= rel=3D"noopener noreferrer">https://mit.zoom.us/my/jcwright
<br /=

[…](#) --=_5df8434a9ade3c77d31336433ce728cc--

Teacher, but I see that the AORSA program has this application, and the setting only needs to set the ndist to 1 and use the CQL3D calculation to calculate the resulting distribution function

@yang5891
Copy link
Author

we don't provide that degree of support for aorsa. you should establish a collaboration with those who do that work
On 2024-12-17 06:49, yang5891 wrote: Hello professor, now I want to use the CQL3D program with the AORSA program in combination. Is it just necessary to put the nc file in the run folder here? But I get an error when I put the nc file generated by CQL3D into the aorsa2d.in folder where I run. The following error message is displayed: before ncopn netcdfnm= cql.nc after ncopn ncid= 65536 istatus 0 before ncdid xdim after inq_dimid xdim= 1 istatus 0 after inq_dimid ydim= 2 istatus 0 after inq_dimid rdim= 844085952 istatus 0 after inq_dimid kdim= 28 istatus 0 proc_cql3d_op: after nf90_inq_dimid nt_id = 35 istatus = 0 proc_cql3d_op: after inquire dimenstion, # of t steps = 4 istatus= 0 ncdiminq: ncid 65536: NetCDF: Invalid dimension ID or name Here's how I should fix it？ -- Reply to this email directly, view it on GitHub [1], or unsubscribe [2]. You are receiving this because you are subscribed to this thread.Message ID: @.***>
-- -john Principal Research Scientist John Wright Office 617-253-9612 zoom: https://mit.zoom.us/my/jcwright Links: ------ [1] #51 [2] https://github.com/notifications/unsubscribe-auth/AB7SLTPHTRLKVTYP46X3P6L2GAFUHAVCNFSM6AAAAABTYHUOYOVHI2DSMVQWIX3LMV43ASLTON2WKOZSG42DINZSGE2DMNI --=_5df8434a9ade3c77d31336433ce728cc Content-Transfer-Encoding: quoted-printable Content-Type: text/html; charset=UTF-8 <meta http-equiv=3D"Content-Type" content=3D"text/html; charset= =3DUTF-8" /><body style=3D'font-size: 10pt; font-family: Verdana,Gen= eva,sans-serif'>

we don't provide that degree of support for aorsa. you should establish = a collaboration with those who do that work

<p id=3D"reply-intro">On 2024-12-17 06:49, yang5891 wrote:

<blockquote type=3D"cite" style=3D"padding: 0 0.4em; border-left: #1010ff 2= px solid; margin: 0"> <div id=3D"replybody1">


<p dir=3D"auto">Hello professor, now I want to use the CQL3D program with t= he AORSA program in combination. Is it just necessary to put the nc file in= the run folder here? But I get an error when I put the nc file generated b= y CQL3D into the aorsa2d.in folder where I run.

<p dir=3D"auto">The following error message is displayed:
before ncopn= netcdfnm=3D
cql.nc

<p dir=3D"auto">after ncopn ncid=3D 65536 istatus 0
before ncdid xdim<= br />after inq_dimid xdim=3D 1 istatus 0
after inq_dimid ydim=3D 2 ist= atus 0
after inq_dimid rdim=3D 844085952 istatus 0
after inq_dimi= d kdim=3D 28 istatus 0
proc_cql3d_op: after nf90_inq_dimid nt_id =3D 3= 5 istatus =3D 0
proc_cql3d_op: after inquire dimenstion, # of t steps = =3D 4 istatus=3D
0
ncdiminq: ncid 65536: NetCDF: Invalid dimensio= n ID or name

<p dir=3D"auto">Here's how I should fix it=EF=BC=9F

<p style=3D"font-size: small; -webkit-text-size-adjust: none; color: #666;"=
—
Reply to this email directly, <a href=3D"https://github.com/O=
RNL-Fusion/aorsa/issues/51" target=3D"_blank" rel=3D"noopener noreferrer">v= iew it on GitHub, or <a href=3D"https://github.com/notifications/unsubs= cribe-auth/AB7SLTPHTRLKVTYP46X3P6L2GAFUHAVCNFSM6AAAAABTYHUOYOVHI2DSMVQWIX3L= MV43ASLTON2WKOZSG42DINZSGE2DMNI" target=3D"_blank" rel=3D"noopener noreferr= er">unsubscribe.
You are receiving this because you are subscribed= to this thread.<img src=3D"https://github.com/notifications/beacon/AB7SLTP= AQXX6CXDFE672VIL2GAFUHA5CNFSM6AAAAABTYHUOYOWGG33NNVSW45C7OR4XAZNFJFZXG5LFVJ= RW63LNMVXHIX3JMTHKHGJAHE.gif" width=3D"1" height=3D"1" /><span style=3D"col= or: transparent; font-size: 0; display: none; visibility: hidden; overflow:= hidden; opacity: 0; width: 0px; height: 0px; max-width: 0; max-height: 0; = mso-hide: all;">Message ID: </issues/51<sp= an>@github.com>


<div id=3D"signature">--
<div class=3D"pre" style=3D"margin: 0; padding: 0; font-family: monospace">= -john
Principal Research Scientist John Wright
Office 617-253-96= 12
zoom: <a href=3D"https://mit.zoom.us/my/jcwright" target=3D"_blank"= rel=3D"noopener noreferrer">https://mit.zoom.us/my/jcwright
<br /=

[…](#) --=_5df8434a9ade3c77d31336433ce728cc--

Teacher, the previous error in the read file was solved by using the old read interface.But now there are two kinds of errors after successfully reading the file:
error (1)forrtl: severe (64): input conversion error, unit 237, file /public/home/yzp/aorsa0/runc1/out237error
(2)Caught signal 11 (Segmentation fault: address not mapped to object at address 0xfea07d70)
==== backtrace (tid: 279637) ====
0 0x00000000005caecb fieldws_() ???:0
1 0x000000000065af2a MAIN__() ???:0
2 0x000000000040fde2 main() ???:0
3 0x0000000000022505 __libc_start_main() ???:0
4 0x000000000040fce9 _start() ???:0

forrtl: severe (174): SIGSEGV, segmentation fault occurred
This seems to have something to do with the nmodesx, nmodesx, nuper, and nupar settings. How should I set these parameters here?

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
2 participants
@jcwright77 @yang5891