DESCRIPTION

Package: fitPoly
Type: Package
Title: Genotype Calling for Bi-Allelic Marker Assays
Version: 4.0.0
Date: 2024-03-15
Author: Roeland E. Voorrips, Gerrit Gort, Alejandro Therese Navarro
Maintainer: Alejandro Therese Navarro <alejandro.theresenavarro@wur.nl>
Description: Genotyping assays for bi-allelic markers (e.g. SNPs) produce
	signal intensities for the two alleles. 'fitPoly' assigns genotypes 
	(allele dosages) to a collection of polyploid samples based on these
	signal intensities. 'fitPoly' replaces the older package 'fitTetra' that was
	limited (a.o.) to only tetraploid populations whereas 'fitPoly' accepts any
	ploidy level. Reference: Voorrips RE, Gort G, Vosman B (2011)
	<doi:10.1186/1471-2105-12-172>. 
	New functions added on conversion of data from SNP array software formats, 
	drawing of XY-scatterplots with or without genotype colors,
    checking against expected F1 segregation patterns,
    comparing results from two different assays (probes) for the same SNP,
    recovery from a saveMarkerModels crash.
License: GPL-2
Depends: R (>= 3.2.0)
Imports: foreach, devEMF, doParallel, grDevices
Suggests: knitr, rmarkdown
RoxygenNote: 7.3.1
VignetteBuilder: knitr
NeedsCompilation: no
Encoding: UTF-8