scDALI (single-cell differential allelic imbalance) is a statistical model and analysis framework that leverages allele-specific analyses of single-cell data to decode cell-state-specific genetic regulation.
Please have a look at the scDALI website for more information on installation and usage!
T. Heinen, S. Secchia, J. Reddington, B. Zhao, E.E.M. Furlong, O. Stegle. scDALI: Modelling allelic heterogeneity of DNA accessibility in single-cells reveals context-specific genetic regulation. Preprint, bioRxiv (2021).