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test_parallel_192
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COMPILING
Running on bee_bs.tre
TREE-QMC version 3.0.4
COMMAND: ./tree-qmc --hybrid --bootstrap -i /ssd1/treeqmc/bee_bs.tre -o bee_bs.out
SETTINGS:
input file: /ssd1/treeqmc/bee_bs.tre
output file: bee_bs.out
weighting mode: hybrid
support min: 0
support max: 100
support default: 0
normalization for artifical taxa mode: n2
execution mode: efficient
random seed for refinement: 12345
random seed for max-cut: 1
max-cut heuristic iteration limit: 10
LOGGING:
Reading input
Found
853 trees
32 taxa
0 polytomies across all trees
Constructing species tree
At most 59 subproblems:
0 subproblems computed.
Parlay time: total: 0.0748
Parlay time: total: 0.0879
Parlay time: total: 0.0984
Parlay time: total: 0.1111
Parlay time: total: 0.1233
Parlay time: total: 0.1467
Parlay time: total: 0.1543
10 subproblems computed.
Parlay time: total: 0.1605
Parlay time: total: 0.1668
Parlay time: total: 0.1732
Parlay time: total: 0.1791
20 subproblems computed.
Parlay time: total: 0.2009
Parlay time: total: 0.2152
Parlay time: total: 0.2232
Parlay time: total: 0.2305
Parlay time: total: 0.2361
30 subproblems computed.
Parlay time: total: 0.2413
Parlay time: total: 0.2524
Parlay time: total: 0.2615
Parlay time: total: 0.2719
Parlay time: total: 0.2794
40 subproblems computed.
Parlay time: total: 0.2860
Parlay time: total: 0.2958
Parlay time: total: 0.3037
Parlay time: total: 0.3097
Parlay time: total: 0.3175
50 subproblems computed.
Parlay time: total: 0.3255
Parlay time: total: 0.3330
Parlay time: total: 0.3391
59 subproblems computed.
Printing species tree
(((((((Hoplonomia_elliotii,Acunomia_melanderi),Curvinomia_chalybeata),Austronomia_australica),(Lipotriches_justiciae,Lipotriches_collaris)),(Afronomia_circumnitens,Macronomia_clavisetis)),((Dieunomia_heteropoda,Dieunomia_triangulifera),(Dufourea_novaeangliae,Lasioglossum_albipes))),((((((((Pseudapis_oxybeloides,Pseudapis_siamensis),((Pseudapis_nilotica,Pseudapis_flavolobata),Pseudapis_interstitinervis)),((Pseudapis_riftensis,Pseudapis_pandeana),Pseudapis_kenyensis)),Pseudapis_cinerea),(Nomiapis_bispinosa,Nomiapis_diversipes)),(Steganomus_junodi,Steganomus_ennediensis)),Ruginomia_rugiventris),(((Pachynomia_tshibindica,Pachynomia_amoenula),Pachynomia_flavicarpa),((Stictonomia_aliceae,Stictonomia_schubotzi),Stictonomia_sangaensis))));
Writing species tree
Parlay time: Execution time: : 1.3518
32,29,29,0,0,0.000000
Running on whale_bayes.tre
TREE-QMC version 3.0.4
COMMAND: ./tree-qmc --hybrid --bootstrap -i /ssd1/treeqmc/whale_bayes.tre -o whale_bayes.out
SETTINGS:
input file: /ssd1/treeqmc/whale_bayes.tre
output file: whale_bayes.out
weighting mode: hybrid
support min: 0
support max: 100
support default: 0
normalization for artifical taxa mode: n2
execution mode: efficient
random seed for refinement: 12345
random seed for max-cut: 1
max-cut heuristic iteration limit: 10
LOGGING:
Reading input
Found
3191 trees
98 taxa
0 polytomies across all trees
Constructing species tree
At most 191 subproblems:
0 subproblems computed.
Parlay time: total: 1.4371
Parlay time: total: 1.6545
Parlay time: total: 1.7306
Parlay time: total: 1.7706
Parlay time: total: 1.8107
Parlay time: total: 1.8478
Parlay time: total: 1.8869
10 subproblems computed.
Parlay time: total: 1.9246
Parlay time: total: 1.9793
Parlay time: total: 2.0240
Parlay time: total: 2.0631
Parlay time: total: 2.1146
20 subproblems computed.
Parlay time: total: 2.1705
Parlay time: total: 2.2225
Parlay time: total: 2.2901
Parlay time: total: 2.3305
Parlay time: total: 2.3921
30 subproblems computed.
Parlay time: total: 2.4329
Parlay time: total: 2.4691
Parlay time: total: 2.6099
Parlay time: total: 2.7270
Parlay time: total: 2.7786
40 subproblems computed.
Parlay time: total: 2.8280
Parlay time: total: 2.8846
Parlay time: total: 2.9356
Parlay time: total: 2.9728
Parlay time: total: 3.0116
50 subproblems computed.
Parlay time: total: 3.0555
Parlay time: total: 3.0961
Parlay time: total: 3.1404
Parlay time: total: 3.1807
60 subproblems computed.
Parlay time: total: 3.2635
Parlay time: total: 3.3115
Parlay time: total: 3.3489
Parlay time: total: 3.4004
Parlay time: total: 3.4489
Parlay time: total: 3.4899
70 subproblems computed.
Parlay time: total: 3.5386
Parlay time: total: 3.6062
Parlay time: total: 3.6559
Parlay time: total: 3.6931
80 subproblems computed.
Parlay time: total: 3.7431
Parlay time: total: 3.8154
Parlay time: total: 3.8768
Parlay time: total: 3.9293
Parlay time: total: 3.9958
90 subproblems computed.
Parlay time: total: 4.0395
Parlay time: total: 4.0848
Parlay time: total: 4.1302
Parlay time: total: 4.1688
Parlay time: total: 4.2066
100 subproblems computed.
Parlay time: total: 4.5644
Parlay time: total: 4.6790
Parlay time: total: 4.7306
Parlay time: total: 4.7675
Parlay time: total: 4.8045
Parlay time: total: 4.8564
110 subproblems computed.
Parlay time: total: 4.9032
Parlay time: total: 4.9441
Parlay time: total: 5.0599
Parlay time: total: 5.2332
Parlay time: total: 5.3165
120 subproblems computed.
Parlay time: total: 5.3880
Parlay time: total: 5.4393
Parlay time: total: 5.4808
Parlay time: total: 5.5201
Parlay time: total: 5.5597
130 subproblems computed.
Parlay time: total: 5.6060
Parlay time: total: 5.6479
Parlay time: total: 5.6876
Parlay time: total: 5.7294
140 subproblems computed.
Parlay time: total: 5.7678
Parlay time: total: 5.8098
Parlay time: total: 5.8539
Parlay time: total: 5.8873
Parlay time: total: 5.9317
150 subproblems computed.
Parlay time: total: 5.9919
Parlay time: total: 6.0460
Parlay time: total: 6.1315
Parlay time: total: 6.1890
Parlay time: total: 6.2585
Parlay time: total: 6.2967
160 subproblems computed.
Parlay time: total: 6.3450
Parlay time: total: 6.3921
Parlay time: total: 6.4367
Parlay time: total: 6.4758
170 subproblems computed.
Parlay time: total: 6.5179
Parlay time: total: 6.5676
Parlay time: total: 6.6061
Parlay time: total: 6.6476
180 subproblems computed.
Parlay time: total: 6.6966
Parlay time: total: 6.7984
Parlay time: total: 6.8545
Parlay time: total: 6.9135
Parlay time: total: 6.9628
190 subproblems computed.
191 subproblems computed.
Printing species tree
((((((((((((((Mper,Mpni),Mden),Mste),MgraAUS),Mhec),((Mbow,Mcar),MlayAUS)),(((Mmir,Meur),Mgin),Mbid)),(Hamp,Hpla9120)),Zcav),Tshe),(Barn,Bbai76728)),((((((((((Bede66737,BedeAUS),Bbor),Bmus49099),((Bphy_baits,Bphy),Mnov)),Erob133443),(Bacu,BbonAUS)),Cmar59905),(((Egla13086,Ejap43864),EausAUS),Bmys)),((((((Oari,Phod),Orle),Gaar),(Btau,Treu2)),(((Vpac,Cbac),Ecab),Sscr)),(Clib,Hippo))),((Kbre,Ksim),Pmac))),((Igeo,Pbla7349),Lvex)),((((((((((((((Dcap108471,Dcap79929),(DdelSJR,Ddeltrop4525)),((Lhos30470,Lhos452),(((Slon16012,Slon24923),Scly1726),Scly1724))),Scoe),(((Sfro7784,Sfro7782),(Satt18473,Satt38219)),Tadu79924)),Ttru),Schi),Sflu9837),((((((Gmel,Gmac39091),(Fatt,Pele)),Pcra123188),Ggri),(Sbre18437,Sbre116871)),(Obre,Ohei))),((((Chea7320,Laus),Ccom40),(Lobl,Lobs)),(Lbor,LperAUS))),Lalb),Oorc),Lacu),(((((Pspi,Pdio),Ppho),Npho),Pdal),(Dleu,Mmon))));
Writing species tree
Parlay time: Execution time: : 11.3666
98,95,95,0,0,0.000000
Running on avian_uce_trees_3679.tre
TREE-QMC version 3.0.4
COMMAND: ./tree-qmc --hybrid --bootstrap -i /ssd1/treeqmc/avian_uce_trees_3679.tre -o avian_uce_trees_3679.out
SETTINGS:
input file: /ssd1/treeqmc/avian_uce_trees_3679.tre
output file: avian_uce_trees_3679.out
weighting mode: hybrid
support min: 0
support max: 100
support default: 0
normalization for artifical taxa mode: n2
execution mode: efficient
random seed for refinement: 12345
random seed for max-cut: 1
max-cut heuristic iteration limit: 10
LOGGING:
Reading input
Found
3679 trees
48 taxa
0 polytomies across all trees
Constructing species tree
At most 91 subproblems:
0 subproblems computed.
Parlay time: total: 0.4113
Parlay time: total: 0.4669
Parlay time: total: 0.5106
Parlay time: total: 0.5576
Parlay time: total: 0.6319
Parlay time: total: 0.6616
Parlay time: total: 0.6839
10 subproblems computed.
Parlay time: total: 0.7065
Parlay time: total: 0.7533
Parlay time: total: 0.7826
Parlay time: total: 0.8091
Parlay time: total: 0.8425
20 subproblems computed.
Parlay time: total: 0.8759
Parlay time: total: 0.9305
Parlay time: total: 0.9624
Parlay time: total: 0.9929
30 subproblems computed.
Parlay time: total: 1.0195
Parlay time: total: 1.0429
Parlay time: total: 1.2018
Parlay time: total: 1.2518
Parlay time: total: 1.2763
40 subproblems computed.
Parlay time: total: 1.2983
Parlay time: total: 1.4281
Parlay time: total: 1.4624
Parlay time: total: 1.4912
Parlay time: total: 1.5152
Parlay time: total: 1.5383
50 subproblems computed.
Parlay time: total: 1.5632
Parlay time: total: 1.6600
Parlay time: total: 1.7462
60 subproblems computed.
Parlay time: total: 1.8446
Parlay time: total: 1.8934
Parlay time: total: 1.9452
Parlay time: total: 1.9723
Parlay time: total: 1.9951
Parlay time: total: 2.0193
70 subproblems computed.
Parlay time: total: 2.0592
Parlay time: total: 2.0895
Parlay time: total: 2.1123
Parlay time: total: 2.1456
Parlay time: total: 2.1762
80 subproblems computed.
Parlay time: total: 2.2072
Parlay time: total: 2.2414
Parlay time: total: 2.2711
Parlay time: total: 2.3011
90 subproblems computed.
91 subproblems computed.
Printing species tree
(((((((((GEOFO,TAEGU),CORBR),MANVI),ACACH),(MELUN,NESNO)),FALPE),CARCR),(((((HALLE,HALAL),CATAU),TYTAL),((((MERNU,PICPU),BUCRH),APAVI),LEPDI)),COLST)),((((((GALGA,MELGA),ANAPL),(STRCA,TINMA)),(PODCR,PHORU)),(((PTEGU,MESUN),COLLI),((CHLUN,TAUER),CUCCA))),(((((((PYGAD,APTFO),FULGL),(((EGRGA,PELCR),NIPNI),PHACA)),GAVST),(EURHE,PHALE)),((CHAPE,CALAN),CAPCA)),((OPHHO,CHAVO),BALRE))));
Writing species tree
Parlay time: Execution time: : 4.4674
48,45,45,0,0,0.000000
Running on 1_best_cds5756.tre
rm: cannot remove '1_best_cds5756.out': No such file or directory
TREE-QMC version 3.0.4
COMMAND: ./tree-qmc --hybrid --bootstrap -i /ssd1/treeqmc/1_best_cds5756.tre -o 1_best_cds5756.out
SETTINGS:
input file: /ssd1/treeqmc/1_best_cds5756.tre
output file: 1_best_cds5756.out
weighting mode: hybrid
support min: 0
support max: 100
support default: 0
normalization for artifical taxa mode: n2
execution mode: efficient
random seed for refinement: 12345
random seed for max-cut: 1
max-cut heuristic iteration limit: 10
LOGGING:
Reading input
Found
5756 trees
125 taxa
0 polytomies across all trees
Constructing species tree
At most 245 subproblems:
0 subproblems computed.
Parlay time: total: 3.5427
1 subproblems computed.
Printing species tree
(mnrnvhlln,ptlnrhync,grntllpct,crvsmndld,crvsbrchy,strnsvlgr,cthrsstlt,fcdllbcll,prnllstrp,cmrhynchs,gespzfrts,junchymls,zntrchlbc,mlspzmldm,serinscnr,erythrrgl,tnpyggttt,lnchrstrt,hrndrstcr,stchyrsrf,zstrpsbrb,psdpdcshm,parusmajr,cynstscrl,pittasrdd,empdnxtrl,mncsvtlln,corappltr,chrxphlnc,lpdthrxcr,nplmchrys,columbalv,ptgnsfsct,atlntsrgr,blrcrglrm,nippnnppn,lptsmsdsc,antrstmsc,rhynchtsj,erypyghls,nyctbsgrn,ptrclsgtt,cathartsr,pdrgsstrg,cuclscnrs,opsthcmsh,brhnsbstr,chrdrsvcf,lmslppncb,cldrspygm,cldrspgnx,turnixvlx,rsstrdcty,mlpsttcsn,amazncllr,nstrntbls,strgpshbr,sttrnscrp,mstrnsncl,phlcrcrxc,egrttgrzt,agthlsbnn,hmprcncmt,chatrplgc,calyptenn,upupaepps,hlcynsngl,merpsnbcs,erystmsgl,pslpgnhmc,pcdspbscn,galbulade,pdcpscrst,carmcrstt,phncptrsr,accptrnss,hltslbcll,hltslccph,aqlchryst,phthnlptr,colsstrts,allgtrmss,strthcmls,apteryxrw,aptryxhst,apteryxwn,rheaamrcn,tnmsgttts,ansrbrchy,ansrcydms,ansrcygnd,anspltyrh,aythyflgl,ansrnssmp,chauntrqt,alctrlthm,penelpplt,cllpplsqm,clnsvrgnn,bmbsclthr,gallsglls,chryslphs,phsnsclch,mlgrsgllp,ctrnxjpnc,numdmlgrs,gavistllt,frgtmgnfc,chlmydtsm,flmrsglcl,plcnscrsp,ciconimgr,thlssrchc,aptndytsf,pygsclsdl,falcchrrg,flcprgrns,tytoalblb,athncnclr,bcrsrhncr,apldrmvtt,trcrythrl,acnthsttc,pipraflcd,pavcrstts);
Writing species tree
Parlay time: Execution time: : 149.9601
125,0,0,0,0,0.000000
Running on butterfly_bs.tre
rm: cannot remove 'butterfly_bs.out': No such file or directory
TREE-QMC version 3.0.4
COMMAND: ./tree-qmc --hybrid --bootstrap -i /ssd1/treeqmc/butterfly_bs.tre -o butterfly_bs.out
SETTINGS:
input file: /ssd1/treeqmc/butterfly_bs.tre
output file: butterfly_bs.out
weighting mode: hybrid
support min: 0
support max: 100
support default: 0
normalization for artifical taxa mode: n2
execution mode: efficient
random seed for refinement: 12345
random seed for max-cut: 1
max-cut heuristic iteration limit: 10
LOGGING:
Reading input
Found
1930 trees
203 taxa
0 polytomies across all trees
Constructing species tree
At most 401 subproblems:
0 subproblems computed.
Parlay time: total: 3.4229
Parlay time: total: 5.9136
Parlay time: total: 6.1723
Parlay time: total: 6.2545
Parlay time: total: 6.2994
Parlay time: total: 6.3350
Parlay time: total: 6.3730
10 subproblems computed.
Parlay time: total: 6.4124
Parlay time: total: 6.4710
Parlay time: total: 6.5267
Parlay time: total: 6.5777
Parlay time: total: 6.6259
20 subproblems computed.
Parlay time: total: 6.6655
Parlay time: total: 6.7161
Parlay time: total: 6.7615
Parlay time: total: 6.8165
Parlay time: total: 6.8592
Parlay time: total: 6.9038
30 subproblems computed.
Parlay time: total: 6.9566
Parlay time: total: 7.0058
Parlay time: total: 7.0539
Parlay time: total: 7.1007
40 subproblems computed.
Parlay time: total: 7.1383
Parlay time: total: 7.2998
Parlay time: total: 7.4215
Parlay time: total: 7.5472
Parlay time: total: 7.7262
Parlay time: total: 7.8311
Parlay time: total: 7.8730
50 subproblems computed.
Parlay time: total: 7.9160
Parlay time: total: 7.9647
Parlay time: total: 8.0478
Parlay time: total: 8.1484
Parlay time: total: 8.2381
60 subproblems computed.
Parlay time: total: 8.2766
Parlay time: total: 8.3556
Parlay time: total: 8.4085
Parlay time: total: 8.4641
70 subproblems computed.
Parlay time: total: 8.5081
Parlay time: total: 8.5573
Parlay time: total: 8.6123
Parlay time: total: 8.6729
Parlay time: total: 8.7095
80 subproblems computed.
Parlay time: total: 8.7754
Parlay time: total: 8.8532
Parlay time: total: 8.9046
Parlay time: total: 8.9643
Parlay time: total: 9.0109
90 subproblems computed.
Parlay time: total: 9.0669
Parlay time: total: 9.1220
Parlay time: total: 9.1542
Parlay time: total: 9.1925
Parlay time: total: 9.2330
100 subproblems computed.
Parlay time: total: 9.2740
Parlay time: total: 9.3095
Parlay time: total: 9.3500
Parlay time: total: 9.3930
Parlay time: total: 9.4575
110 subproblems computed.
Parlay time: total: 9.4999
Parlay time: total: 9.5352
Parlay time: total: 9.5843
Parlay time: total: 9.6254
120 subproblems computed.
Parlay time: total: 9.6635
Parlay time: total: 9.7038
Parlay time: total: 9.7453
Parlay time: total: 9.7900
Parlay time: total: 9.8426
130 subproblems computed.
Parlay time: total: 9.8860
Parlay time: total: 9.9244
Parlay time: total: 9.9592
Parlay time: total: 10.6895
140 subproblems computed.
Parlay time: total: 10.9774
Parlay time: total: 11.0741
Parlay time: total: 11.1178
Parlay time: total: 11.1672
Parlay time: total: 11.2151
Parlay time: total: 11.2695
150 subproblems computed.
Parlay time: total: 11.3093
Parlay time: total: 11.3507
Parlay time: total: 11.3865
Parlay time: total: 11.4413
Parlay time: total: 11.5036
160 subproblems computed.
Parlay time: total: 11.5534
Parlay time: total: 11.6009
Parlay time: total: 11.6519
Parlay time: total: 11.8635
Parlay time: total: 11.9117
170 subproblems computed.
Parlay time: total: 11.9493
Parlay time: total: 11.9898
Parlay time: total: 12.0385
Parlay time: total: 12.0815
Parlay time: total: 12.1184
180 subproblems computed.
Parlay time: total: 12.1617
Parlay time: total: 12.2086
Parlay time: total: 12.3997
Parlay time: total: 12.5478
Parlay time: total: 12.6443
Parlay time: total: 12.6865
190 subproblems computed.
Parlay time: total: 12.7880
Parlay time: total: 12.9697
Parlay time: total: 13.0949
Parlay time: total: 13.1467
Parlay time: total: 13.2017
Parlay time: total: 13.2639
Parlay time: total: 13.3136
200 subproblems computed.
Parlay time: total: 13.3627
Parlay time: total: 13.4113
Parlay time: total: 13.5050
Parlay time: total: 13.5684
210 subproblems computed.
Parlay time: total: 13.6264
Parlay time: total: 13.6847
Parlay time: total: 13.7249
Parlay time: total: 13.7824
220 subproblems computed.
Parlay time: total: 13.8225
Parlay time: total: 13.8684
Parlay time: total: 13.9192
Parlay time: total: 13.9764
230 subproblems computed.
Parlay time: total: 14.0141
Parlay time: total: 14.1055
Parlay time: total: 14.2117
Parlay time: total: 14.3239
Parlay time: total: 14.3654
Parlay time: total: 14.4110
Parlay time: total: 14.4611
240 subproblems computed.
Parlay time: total: 14.5100
Parlay time: total: 14.7101
Parlay time: total: 14.8039
Parlay time: total: 14.8954
250 subproblems computed.
Parlay time: total: 14.9546
Parlay time: total: 15.0135
Parlay time: total: 15.0736
Parlay time: total: 15.1082
260 subproblems computed.
Parlay time: total: 15.1468
Parlay time: total: 15.1825
Parlay time: total: 15.2800
Parlay time: total: 15.3526
Parlay time: total: 15.4235
270 subproblems computed.
Parlay time: total: 15.4821
Parlay time: total: 15.5444
Parlay time: total: 15.6030
Parlay time: total: 15.6447
Parlay time: total: 15.6841
Parlay time: total: 15.7257
280 subproblems computed.
Parlay time: total: 15.7706
Parlay time: total: 15.8166
Parlay time: total: 15.8527
Parlay time: total: 15.8995
290 subproblems computed.
Parlay time: total: 15.9672
Parlay time: total: 16.0058
Parlay time: total: 16.0453
Parlay time: total: 16.0900
Parlay time: total: 16.1268
300 subproblems computed.
Parlay time: total: 16.1834
Parlay time: total: 16.2442
Parlay time: total: 16.2812
Parlay time: total: 16.3248
310 subproblems computed.
Parlay time: total: 16.3875
Parlay time: total: 16.4646
Parlay time: total: 16.5247
Parlay time: total: 16.5640
Parlay time: total: 16.6027
320 subproblems computed.
Parlay time: total: 16.6454
Parlay time: total: 16.7708
Parlay time: total: 16.8412
Parlay time: total: 16.8895
Parlay time: total: 16.9336
Parlay time: total: 16.9728
330 subproblems computed.
Parlay time: total: 17.0197
Parlay time: total: 17.0583
Parlay time: total: 17.1017
Parlay time: total: 17.1509
340 subproblems computed.
Parlay time: total: 17.2030
Parlay time: total: 17.2417
Parlay time: total: 17.2839
Parlay time: total: 17.3364
Parlay time: total: 17.3744
350 subproblems computed.
Parlay time: total: 17.4310
Parlay time: total: 17.4801
Parlay time: total: 17.5710
Parlay time: total: 17.6348
Parlay time: total: 17.6866
Parlay time: total: 17.7263
360 subproblems computed.
Parlay time: total: 17.7685
Parlay time: total: 17.8226
Parlay time: total: 17.8824
Parlay time: total: 17.9395
370 subproblems computed.
Parlay time: total: 17.9883
Parlay time: total: 18.0434
Parlay time: total: 18.1020
Parlay time: total: 18.1508
Parlay time: total: 18.1962
380 subproblems computed.
Parlay time: total: 18.2702
Parlay time: total: 18.3326
Parlay time: total: 18.3895
Parlay time: total: 18.4346
Parlay time: total: 18.4779
Parlay time: total: 18.5145
390 subproblems computed.
Parlay time: total: 18.5635
Parlay time: total: 18.6051
Parlay time: total: 18.6430
400 subproblems computed.
401 subproblems computed.
Printing species tree
(((((((((((((((((((((((((Noctuoidea_Noctuidae_Noctuinae_Agrotis_infusa_WHANIsrmTMATRAAPEI__46,Noctuoidea_Noctuidae_Noctuinae_Striacosta_albicosta_Striacosta),Noctuoidea_Noctuidae_Noctuinae_Mythimna_separata),Noctuoidea_Noctuidae_Amphipyrinae_Sesamia_inferens),((Noctuoidea_Noctuidae_Heliothinae_Heliothis_virescens_Hv,Noctuoidea_Noctuidae_Heliothinae_Helicoverpa_zea_Hz2),(Noctuoidea_Noctuidae_Noctuinae_Spodoptera_exigua_Noctuoidea,Noctuoidea_Noctuidae_Noctuinae_Spodoptera_frugiperda))),Noctuoidea_Noctuidae_Amphipyrinae_Amphipyra_pyramidea_INShauTAVRAAPEI__16),Noctuoidea_Euteliidae_Anigraea_sp_SW130103),(((((Noctuoidea_Erebidae_Arctiinae_Phragmatobia_fuliginosa_INShauTBDRAAPEI__31,Noctuoidea_Erebidae_Arctiinae_Arctia_plantaginis_ERR1466856),Noctuoidea_Erebidae_Arctiinae_Melese_sp_FG120095),(Noctuoidea_Erebidae_Arctiinae_Amata_phegea_INShauTAERAAPEI__8,Noctuoidea_Erebidae_Arctiinae_Auriculoceryx_pterodactyliformis_RINSinlTDRRAAPEI__36)),(Noctuoidea_Erebidae_Calpinae_Phyllodes_eyndhovii_RINSinlTDNRAAPEI__171,Noctuoidea_Erebidae_Calpinae_Eudocima_salaminia_SW130232)),(Noctuoidea_Erebidae_Lymantriinae_Euproctis_chrysorrhoea,Noctuoidea_Erebidae_Lymantriinae_Lymantria_dispar_Ly3))),Noctuoidea_Nolidae_Nolinae_Manoba_major_SW130224),(Noctuoidea_Notodontidae_Nystaleinae_Notoplusia_minuta_FG120015,Noctuoidea_Notodontidae_Notodontinae_Pheosia_gnoma_INSqiqTBHRAAPEI__71)),(((((((((((Bombycoidea_Sphingidae_Macroglossinae_Xylophanes_tersa_Xter2,Bombycoidea_Sphingidae_Macroglossinae_Hyles_euphorbiae_INSinlTAYRAAPEI__56),Bombycoidea_Sphingidae_Macroglossinae_Darapsa_myron_Dara),Bombycoidea_Sphingidae_Macroglossinae_Macroglossum_pyrrhosticta_MacrH),Bombycoidea_Sphingidae_Macroglossinae_Enyo_lugubris_elug1),Bombycoidea_Sphingidae_Macroglossinae_Hemaris_diffinis_HEMA2),(((Bombycoidea_Sphingidae_Sphinginae_Sphinx_pinastri_INShauTAZRAAPEI__20,Bombycoidea_Sphingidae_Sphinginae_Ceratomia_undulosa_cunda3),Bombycoidea_Sphingidae_Sphinginae_Manduca_sexta),((Bombycoidea_Sphingidae_Smerinthinae_Parum_colligata_V005T,Bombycoidea_Sphingidae_Smerinthinae_Smerinthus_saliceti_AZ130010T),Bombycoidea_Sphingidae_Smerinthinae_Adhemarius_daphne_FG120049B))),((((Bombycoidea_Saturniidae_Saturniinae_Actias_luna_acti2,Bombycoidea_Saturniidae_Saturniinae_Saturnia_pyri_INShkeTACRAAPEI__87),Bombycoidea_Saturniidae_Saturniinae_Attacus_atlas_Attac),(Bombycoidea_Saturniidae_Ceratocampinae_Eacles_sp_FG120096B,Bombycoidea_Saturniidae_Hemileucinae_Hemileuca_maia_BuckH)),Bombycoidea_Saturniidae_Oxyteninae_Therinia_lactucina_FG120016)),(Bombycoidea_Bombycidae_Bombyx_mori_BMORI,Bombycoidea_Bombycidae_Colla_micacea_FG120013)),Bombycoidea_Endromidae_Mustilizans_dierli_RINSinlTDURAAPEI__43),(((Bombycoidea_Eupterotidae_Eupterotinae_Ganisa_similis_RINSinlTDMRAAPEI__136,Bombycoidea_Eupterotidae_Eupterotinae_Eupterote_muluana_SW13020T),Bombycoidea_Brahmaeidae_Brahmaea_hearseyi_RINSinlTDQRAAPEI__35),Bombycoidea_Bombycidae_Apatelodes_pithala_FG120036B)),((Lasiocampoidea_Lasiocampidae_Macromphaliinae_Artace_sp_FG120070B,Lasiocampoidea_Lasiocampidae_Macromphaliinae_Tolype_notialis_Tol),Lasiocampoidea_Lasiocampidae_Dendrolimus_pini_INSlupTBORAAPEI__36))),(((((((Geometroidea_Geometridae_Ennominae_Ectropis_obliqua,Geometroidea_Geometridae_Ennominae_Biston_betularia_Bb),Geometroidea_Geometridae_Ennominae_Macaria_distribuaria_GNV120029),(Geometroidea_Geometridae_Geometrinae_Nemoria_lixaria_GNV120032,Geometroidea_Geometridae_Geometrinae_Chlorosea_margaretaria_Chl)),Geometroidea_Geometridae_Larentiinae_Operophtera_brumata),Geometroidea_Geometridae_Sterrhinae_Idaea_sp_Id),(Geometroidea_Uraniidae_Epipleminae_Calledapteryx_dryopterata_Cal,Geometroidea_Uraniidae_Uraniinae_Lyssa_zampa_RINSinlTDLRAAPEI__126)),(Geometroidea_Epicopeiidae_Epicopeia_hainseii_Epc3,Geometroidea_Sematuridae_Sematurinae_Mania_lunus_INSerlTAWRABPEI__19))),(((((Drepanoidea_Drepanidae_Thyatirinae_Pseudothyatira_cymatophoroides_Pc,Drepanoidea_Drepanidae_Thyatirinae_Thyatira_batis_INSnfrTBCRAAPEI__17),Drepanoidea_Drepanidae_Cyclidiinae_Cyclidia_substigmaria_Dcy),(Drepanoidea_Drepanidae_Drepaninae_Tridrepana_flava_SW130064,Drepanoidea_Drepanidae_Drepaninae_Macrauzata_submontana_RINSinlTDPRAAPEI__34)),Drepanoidea_Doidae_Doa_sp_Do2),Drepanoidea_Cimeliidae_Axia_margarita_Ax)),(Mimallonoidea_Mimallonidae_Menevia_lantona_INSerlTBRRAAPEI__75,Mimallonoidea_Mimallonidae_Lacosoma_chiridota_Mim)),((((Pyraloidea_Crambidae_Crambinae_Catoptria_oregonicus_Cr4,Pyraloidea_Crambidae_Crambinae_Catoptria_falsella_INSlupTAXRAAPEI__11),(Pyraloidea_Crambidae_Crambinae_Chilo_suppressalis,Pyraloidea_Crambidae_Crambinae_Myelobia_sp_FG120071B)),((Pyraloidea_Crambidae_Spilomelinae_Cnaphalocrocis_medinalis_SRR64791,Pyraloidea_Pyralidae_Spilomelinae_Spilomela_sp_INSerlTAIRAAPEI__75),Pyraloidea_Crambidae_Spilomelinae_Cirrhochrista_sp_RINSinlTDSRAAPEI__37)),((Pyraloidea_Pyralidae_Phycitinae_Plodia_interpunctella,Pyraloidea_Pyralidae_Amyelois_transitella_Pyraloidea),Pyraloidea_Pyralidae_Galleriinae_Galleria_melonella_Gal))),((((Gelechioidea_Cosmopterigidae_Cosmopteriginae_Hyposmocoma_kahamanoa_RINysjTAAABRAAPEI__215,Gelechioidea_Autostichidae_Autostichinae_Autosticha_sp_RINSinlTDTRAAPEI__41),(Gelechioidea_Gelechiidae_Dichomeridinae_Dichomeris_punctidiscella_Dch,Gelechioidea_Gelechiidae_Gelechiinae_Tuta_absoluta)),Gelechioidea_Depressariidae_Psilocorsis_reflexella_Psi),Gelechioidea_Depressariidae_Stenomatinae_Antaeotricha_schlaegeri_Ant)),((((Thyridoidea_Thyrididae_Canaea_sp_RINSinlTDVRAAPEI__44,Thyridoidea_Thyrididae_Striglinae_Striglina_suzukii_Ssk),Thyridoidea_Thyrididae_Pseudothyris_sepulchralis_GNV139006),Thyridoidea_Thyrididae_Siculodinae_Zeuzerodes_maculata_FG120079),Calliduloidea_Callidulidae_Callidulinae_Pterodecta_felderi_INSerlTABRAAPEI__84)),(((Pterophoroidea_Pterophoridae_Pterophorinae_Pterophorus_pentadactyla_INSlupTBTRAAPEI__44,Pterophoroidea_Pterophoridae_Pterophorinae_Emmelina_monodactyla_Emm),Pterophoroidea_Pterophoridae_Pterophorinae_Lantanophaga_pusillidactyla_GNV120027),Alucitoidea_Alucitidae_Alucita_desmodactyla_ANIsrmTAAORAAPEI__215)),((((((Papilionoidea_Pieridae_Coliadinae_Colias_croceus_INShkeTBFRAAPEI__79,Papilionoidea_Pieridae_Coliadinae_Phoebis_sennae),((Papilionoidea_Pieridae_Pierinae_Hebomoia_glaucippe_BRF140003,Papilionoidea_Pieridae_Pierinae_Anthocharis_cardamines_INSnfrTAYRAAPEI__13),Papilionoidea_Pieridae_Pierinae_Ascia_monuste_BRF140001)),(((((Papilionoidea_Nymphalidae_Satyrinae_Bicyclus_anynana_INShkeTATRAAPEI__56,Papilionoidea_Nymphalidae_Satyrinae_Pararge_aegeria_INSfrgTADRAAPEI__22),Papilionoidea_Nymphalidae_Satyrinae_Maniola_jurtina),(((Papilionoidea_Nymphalidae_Nymphalinae_Junonia_coenia,Papilionoidea_Nymphalidae_Nymphalinae_Melitaea_cinxia),Papilionoidea_Nymphalidae_Nymphalinae_Polygonia_c*album_INSfrgTAJRAAPEI__20),Papilionoidea_Nymphalidae_Heliconiinae_Heliconius_melpomene_Papilionoidea)),Papilionoidea_Nymphalidae_Danainae_Danaus_plexippus_DPLEX),((((Papilionoidea_Lycaenidae_Polyommatinae_Hemiargus_ceraunus_GNV120025,Papilionoidea_Lycaenidae_Polyommatinae_Polyommatus_icarus_INShauTBGRAAPEI__35),Papilionoidea_Lycaenidae_Theclinae_Calycopis_cecrops_Papilionoidea),Papilionoidea_Lycaenidae_Theclinae_Cigaritis_takanonis_Papilionoidea),(Papilionoidea_Riodinidae_Riodininae_Semomesia_capanea_FG120077,Papilionoidea_Riodinidae_Riodininae_Mycastor_nealces_INSerlTBMRAAPEI__57)))),((((Papilionoidea_Hesperiidae_Hesperiinae_Thymelicus_sylvestris,Papilionoidea_Hesperiidae_Hesperiinae_Lerema_accius),Papilionoidea_Hesperiidae_Megathyminae_Megathymus_yuccae_GNV139000),Papilionoidea_Hesperiidae_Hesperiinae_Hylephila_phyleus_GNV120020),Papilionoidea_Hesperiidae_Eudamiinae_Urbanus_proteus_INSerlTBFRAAPEI__36)),(Papilionoidea_Hedylidae_Macrosoma_hedylaria_FG120122,Papilionoidea_Hedylidae_Macrosoma_sp_RINSinlTEBRAAPEI__71)),(((Papilionoidea_Papilionidae_Papilioninae_Papilio_machaon_Papilionoidea,Papilionoidea_Papilionidae_Papilioninae_Papilio_glaucus_SRR850324),Papilionoidea_Papilionidae_Papilioninae_Parides_eurimedes_INSjdsTAJRAAPEI__36),Papilionoidea_Papilionidae_Parnassiinae_Luehdorfia_chinensis))),((((Sesioidea_Sesiidae_Sesiinae_Podosesia_syringae_Podo,Sesioidea_Sesiidae_Sesiinae_Bembecia_ichneumoniformis_INSlupTBGRAAPEI__20),Sesioidea_Sesiidae_Sesiinae_Vitacea_polistiformis_Vit),(((Cossoidea_Cossidae_Zeuzerinae_Psychonoctua_personalis_Ppr2,Cossoidea_Cossidae_Zeuzerinae_Morpheis_pyracmon_INSerlTAQRAAPEI__118),((((Sesioidea_Castniidae_Castniinae_Synemon_plana_Cul,Sesioidea_Castniidae_Castniinae_Telchin_licus_SRR1204999),Cossoidea_Cossidae_Archaeoses_polygrapha_Arc),(Cossoidea_Cossidae_Cossinae_Prionoxystus_robiniae_Prob2,Cossoidea_Cossidae_Cossinae_Culama_sp_Cul2)),Cossoidea_Cossidae_Hypoptinae_Givira_mucida_Giv2)),Cossoidea_Cossidae_Cossulinae_Spinulata_maruga_Mar)),(((Zygaenoidea_Megalopygidae_Megalopyge_crispata_Lag,Zygaenoidea_Megalopygidae_Trosia_sp_INSerlTAFRAAPEI__62),(Zygaenoidea_Limacodidae_Demonarosa_rufotessellata_RINSinlTDXRAAPEI__56,Zygaenoidea_Dalceridae_Dalcerinae_Dalcera_abrasa_FG120035)),(Zygaenoidea_Zygaenidae_Zygaeninae_Zygaena_fausta_INSjdsTAWRAAPEI__39,Zygaenoidea_Lacturidae_Lactura_subfervens_Sub)))),((((Tortricoidea_Tortricidae_Olethreutinae_Grapholita_dimorpha_SRR803483,Tortricoidea_Tortricidae_Olethreutinae_Cydia_pomonella_Cyd),Tortricoidea_Tortricidae_Olethreutinae_Phaecasiophora_niveiguttana_Cro),Immoidea_Immidae_Imma_tetrascia_Imm),Choreutoidea_Choreutidae_Choreutinae_Hemerophila_diva_Cor5)),Urodoidea_Urodidae_Urodus_decens_Ur2),((((((((Gracillarioidea_Gracillariidae_Acrocercopinae_Acrocercops_transecta,Gracillarioidea_Gracillariidae_Phyllocnistinae_Phyllocnistis_citrella_Pcit2),Gracillarioidea_Gracillariidae_Lithocolletinae_Cameraria_ohridella_INSeqtTDMRAAPEI__95),Gracillarioidea_Gracillariidae_Ornixolinae_Philodoria_sp_CJ260),Gracillarioidea_Gracillariidae_Gracillariinae_Caloptilia_triadicae_calo),Gracillarioidea_Bucculatricidae_Bucculatrix_cristatella_ANIsrmTAASRAAPEI__220),(Yponomeutoidea_Plutellidae_Plutella_xylostella,Yponomeutoidea_Yponomeutidae_Yponomeutinae_Yponomeuta_evonymellus_INShauTBFRAAPEI__34)),Gracillarioidea_Roeslerstammiidae_Amphithera_heteroleuca_INSpmbTAHRAAPEI__206),Yponomeutoidea_Lyonetiidae_Cemiostominae_Leucoptera_coffeella_RINysjTAAAARAAPEI__214)),((Tineoidea_Tineidae_Harmacloninae_Harmaclona_sp_RINSinlTDYRAAPEI__57,Tineoidea_Tineidae_Tineinae_Tineola_bisselliella_INSswpTACRAAPEI__13),Tineoidea_Dryadaulidae_Dryadaula_visaliella_Dry)),Tineoidea_Psychidae_Oiketicinae_Thyridopteryx_ephemeraeformis_Tep2),(((((((((((((((Trichoptera_Polycentropodidae_Polycentropodinae_Plectrocnemia_sp,Trichoptera_Psychomyiidae_Psychomyiinae_Psychomyia_flavida),(Trichoptera_Stenopsychidae_Stenopsychodes_sp,Trichoptera_Philopotamidae_Philopotaminae_Philopotamus_ludificatus_Philopotamus)),Trichoptera_Hydropsychidae_Arctopsychinae_Arctopsyche_palpata),(((Trichoptera_Leptoceridae_Leptocerinae_Nectopsyche_candida,Trichoptera_Helicopsychidae_Helicopsyche_borealis),Trichoptera_Phryganeidae_Phryganeinae_Ptilostomis_semifasciata),Trichoptera_Hydroptilidae_Ptilocolepinae_Palaeagapetus_nearcticus_RINSramTAARAAPEI__209_zz)),((((Siphonaptera_Pulicidae_Archaeopsyllini_Ctenocephalides_felis,Siphonaptera_Ceratophyllidae_Ceratophyllinae_Ceratophyllus_gallinae),(Mecoptera_Boreidae_Boreus_hyemalis,Mecoptera_Bittacidae_Bittacus_pilicornis_)),((Diptera_Drosophilidae_Drosophilinae_Drosophila_melanogaster,Diptera_Tachinidae_Tachininae_Triarthria_setipennis),Diptera_Culicidae_Anophelinae_Anopheles_gambiae)),Coleoptera_Tenebrionidae_Tenebrioninae_Tribolium_castaneum_TCAST)),Micropterigoidea_Micropterigidae_Micropterix_calthella_Mica__N),Agathiphagoidea_Agathiphagidae_Agathiphaga_queenslandensis_Aga3),Heterobathmioidea_Heterobathmiidae_Heterobathmia_sp_Hsp),((Neopseustoidea_Neopseustidae_Neopseustinae_Neopseustis_meyricki_RINSinlTEERAAPEI__79,Neopseustoidea_Acanthopteroctetidae_Acanthopteroctetes_unifascia_Aca4),Eriocranioidea_Eriocraniidae_Dyseriocrania_subpurpurella_INSbusTBDRAAPEI__79)),(((Hepialoidea_Hepialidae_Phymatopus_californicus_Phm,Hepialoidea_Hepialidae_Triodia_sylvina_INSnfrTAVRAAPEI__9),Hepialoidea_Hepialidae_Cibyra_sp_FG120028B),Lophocoronoidea_Lophocoronidae_Lophocorona_astipica_Loas)),((Nepticuloidea_Nepticulidae_Nepticulinae_Enteucha_acetosae_Enac2,Nepticuloidea_Nepticulidae_Nepticulinae_Stigmella_atricapitella_ANIsrmTAAWRAAPEI__225),Nepticuloidea_Opostegidae_Oposteginae_Pseudopostega_cf.quadristrigella_Pqd)),((Adeloidea_Prodoxidae_Tegeticula_yuccasella_Tyu4,Adeloidea_Adelidae_Adelinae_Nemophora_degeerella_INShauTABRAAPEI__93),Andesianoidea_Andesianidae_Andesiana_lamellata_RINSinlTEARAAPEI__62)),(Palaephatoidea_Palaephatidae_Palaephatus_nielseni_Pro43D,Palaephatoidea_Palaephatidae_Palaephatus_luteolus_Pal)),((Tischerioidea_Tischeriidae_Tischeria_quercitella_Ts2,Tischerioidea_Tischeriidae_Coptotriche_citrinipennella_INSpmbTAIRAAPEI__207),(Palaephatoidea_Palaephatidae_Ptyssoptera_sp_Ptys,Palaephatoidea_Palaephatidae_Metaphatus_ochraceus_Met4))),Tineoidea_Meessiidae_Meessiinae_Eudarcia_simulatricella_Euds));
Writing species tree
Parlay time: Execution time: : 37.0222
203,200,200,0,0,0.000000
Running on zhang_cetacean.tre
rm: cannot remove 'zhang_cetacean.out': No such file or directory
TREE-QMC version 3.0.4
COMMAND: ./tree-qmc --hybrid --bootstrap -i /ssd1/treeqmc/zhang_cetacean.tre -o zhang_cetacean.out
SETTINGS:
input file: /ssd1/treeqmc/zhang_cetacean.tre
output file: zhang_cetacean.out
weighting mode: hybrid
support min: 0
support max: 100
support default: 0
normalization for artifical taxa mode: n2
execution mode: efficient
random seed for refinement: 12345
random seed for max-cut: 1
max-cut heuristic iteration limit: 10
LOGGING:
Reading input
Found
3191 trees
98 taxa
0 polytomies across all trees
Constructing species tree
At most 191 subproblems:
0 subproblems computed.
Parlay time: total: 1.3117
Parlay time: total: 1.5317
Parlay time: total: 1.6113
Parlay time: total: 1.6656
Parlay time: total: 1.7026
Parlay time: total: 1.7489
Parlay time: total: 1.7876
10 subproblems computed.
Parlay time: total: 1.8248
Parlay time: total: 1.8765
Parlay time: total: 1.9263
Parlay time: total: 1.9606
Parlay time: total: 2.0139
20 subproblems computed.
Parlay time: total: 2.0505
Parlay time: total: 2.1039
Parlay time: total: 2.1473
Parlay time: total: 2.1854
Parlay time: total: 2.2216
30 subproblems computed.
Parlay time: total: 2.2612
Parlay time: total: 2.2991
Parlay time: total: 2.4339
Parlay time: total: 2.5381
Parlay time: total: 2.6050
40 subproblems computed.
Parlay time: total: 2.6531
Parlay time: total: 2.7098
Parlay time: total: 2.7618
Parlay time: total: 2.7948
Parlay time: total: 2.8337
50 subproblems computed.
Parlay time: total: 2.8773
Parlay time: total: 2.9156
Parlay time: total: 2.9591
Parlay time: total: 3.0009
60 subproblems computed.
Parlay time: total: 3.0895
Parlay time: total: 3.1389
Parlay time: total: 3.1761
Parlay time: total: 3.2257
Parlay time: total: 3.2782
Parlay time: total: 3.3210
70 subproblems computed.
Parlay time: total: 3.3657
Parlay time: total: 3.4356
Parlay time: total: 3.4864
Parlay time: total: 3.5251
80 subproblems computed.
Parlay time: total: 3.5750
Parlay time: total: 3.6384
Parlay time: total: 3.6979
Parlay time: total: 3.7501
Parlay time: total: 3.8090
90 subproblems computed.
Parlay time: total: 3.8562
Parlay time: total: 3.9013
Parlay time: total: 3.9470
Parlay time: total: 3.9842
Parlay time: total: 4.0217
100 subproblems computed.
Parlay time: total: 4.3304
Parlay time: total: 4.4848
Parlay time: total: 4.5402
Parlay time: total: 4.5795
Parlay time: total: 4.6146
Parlay time: total: 4.6542
110 subproblems computed.
Parlay time: total: 4.7046
Parlay time: total: 4.7457
Parlay time: total: 4.8431
Parlay time: total: 4.9279
Parlay time: total: 4.9993
120 subproblems computed.
Parlay time: total: 5.0600
Parlay time: total: 5.1123
Parlay time: total: 5.1530
Parlay time: total: 5.1919
Parlay time: total: 5.2498
130 subproblems computed.
Parlay time: total: 5.2972
Parlay time: total: 5.3419
Parlay time: total: 5.3844
Parlay time: total: 5.4254
140 subproblems computed.
Parlay time: total: 5.4652
Parlay time: total: 5.5038
Parlay time: total: 5.5485
Parlay time: total: 5.5865
Parlay time: total: 5.6324
150 subproblems computed.
Parlay time: total: 5.6939
Parlay time: total: 5.7526
Parlay time: total: 5.8383
Parlay time: total: 5.8950
Parlay time: total: 5.9659
Parlay time: total: 6.0058
160 subproblems computed.
Parlay time: total: 6.0602
Parlay time: total: 6.1075
Parlay time: total: 6.1532
Parlay time: total: 6.1920
170 subproblems computed.
Parlay time: total: 6.2336
Parlay time: total: 6.2848
Parlay time: total: 6.3259
Parlay time: total: 6.3652
180 subproblems computed.
Parlay time: total: 6.4142
Parlay time: total: 6.4802
Parlay time: total: 6.5194
Parlay time: total: 6.5772
Parlay time: total: 6.6261
190 subproblems computed.
191 subproblems computed.
Printing species tree
((((((((((((((Mper,Mpni),Mden),Mste),MgraAUS),Mhec),((Mbow,Mcar),MlayAUS)),(((Mmir,Meur),Mgin),Mbid)),(Hamp,Hpla9120)),Zcav),Tshe),(Barn,Bbai76728)),((((((((((Bede66737,BedeAUS),Bbor),Bmus49099),((Bphy_baits,Bphy),Mnov)),Erob133443),(Bacu,BbonAUS)),Cmar59905),(((Egla13086,Ejap43864),EausAUS),Bmys)),((((((Oari,Phod),Orle),Gaar),(Btau,Treu2)),(((Vpac,Cbac),Ecab),Sscr)),(Clib,Hippo))),((Kbre,Ksim),Pmac))),((Igeo,Pbla7349),Lvex)),((((((((((((((Dcap108471,Dcap79929),(DdelSJR,Ddeltrop4525)),((Lhos30470,Lhos452),(((Slon16012,Slon24923),Scly1726),Scly1724))),Scoe),(((Sfro7784,Sfro7782),(Satt18473,Satt38219)),Tadu79924)),Ttru),Schi),Sflu9837),((((((Gmel,Gmac39091),(Fatt,Pele)),Pcra123188),Ggri),(Sbre18437,Sbre116871)),(Obre,Ohei))),((((Chea7320,Laus),Ccom40),(Lobl,Lobs)),(Lbor,LperAUS))),Lalb),Oorc),Lacu),(((((Pspi,Pdio),Ppho),Npho),Pdal),(Dleu,Mmon))));
Writing species tree
Parlay time: Execution time: : 11.0463
98,95,95,0,0,0.000000
Running on 1_best_intron4871.tre
rm: cannot remove '1_best_intron4871.out': No such file or directory
TREE-QMC version 3.0.4
COMMAND: ./tree-qmc --hybrid --bootstrap -i /ssd1/treeqmc/1_best_intron4871.tre -o 1_best_intron4871.out
SETTINGS:
input file: /ssd1/treeqmc/1_best_intron4871.tre
output file: 1_best_intron4871.out
weighting mode: hybrid
support min: 0
support max: 100
support default: 0
normalization for artifical taxa mode: n2
execution mode: efficient
random seed for refinement: 12345
random seed for max-cut: 1
max-cut heuristic iteration limit: 10
LOGGING:
Reading input
Found
4871 trees
125 taxa
0 polytomies across all trees
Constructing species tree
At most 245 subproblems:
0 subproblems computed.
Parlay time: total: 3.0372
1 subproblems computed.
Printing species tree
(ciconimgr,nippnnppn,phncptrsr,phlcrcrxc,pdrgsstrg,phthnlptr,carmcrstt,strgpshbr,nstrntbls,amazncllr,mlpsttcsn,lptsmsdsc,cathartsr,apldrmvtt,opsthcmsh,pcdspbscn,colsstrts,pdcpscrst,mstrnsncl,gavistllt,athncnclr,nyctbsgrn,plcnscrsp,aptndytsf,pygsclsdl,columbalv,ptgnsfsct,sttrnscrp,cldrspygm,cldrspgnx,rsstrdcty,turnixvlx,chrdrsvcf,brhnsbstr,lmslppncb,atlntsrgr,chlmydtsm,cuclscnrs,apteryxwn,apteryxrw,aptryxhst,strthcmls,tnmsgttts,rheaamrcn,alctrlthm,chauntrqt,penelpplt,numdmlgrs,gallsglls,chryslphs,phsnsclch,mlgrsgllp,clnsvrgnn,cllpplsqm,ansrnssmp,ansrbrchy,ansrcydms,ansrcygnd,aythyflgl,anspltyrh,egrttgrzt,ptrclsgtt,blrcrglrm,antrstmsc,trcrythrl,agthlsbnn,calyptenn,hmprcncmt,chatrplgc,upupaepps,erystmsgl,hlcynsngl,merpsnbcs,galbulade,bcrsrhncr,erypyghls,rhynchtsj,thlssrchc,chrxphlnc,corappltr,mncsvtlln,lpdthrxcr,nplmchrys,empdnxtrl,pittasrdd,mnrnvhlln,ptlnrhync,grntllpct,crvsbrchy,crvsmndld,psdpdcshm,cynstscrl,parusmajr,strnsvlgr,cthrsstlt,fcdllbcll,serinscnr,cmrhynchs,gespzfrts,zntrchlbc,junchymls,mlspzmldm,tnpyggttt,erythrrgl,lnchrstrt,prnllstrp,hrndrstcr,stchyrsrf,zstrpsbrb,acnthsttc,frgtmgnfc,flmrsglcl,falcchrrg,flcprgrns,tytoalblb,aqlchryst,hltslccph,hltslbcll,accptrnss,pipraflcd,pslpgnhmc,ctrnxjpnc,bmbsclthr,pavcrstts,allgtrmss);
Writing species tree
Parlay time: Execution time: : 140.8494
125,0,0,0,0,0.000000
Running on avian14k_bs.tre
rm: cannot remove 'avian14k_bs.out': No such file or directory
TREE-QMC version 3.0.4
COMMAND: ./tree-qmc --hybrid --bootstrap -i /ssd1/treeqmc/avian14k_bs.tre -o avian14k_bs.out
SETTINGS:
input file: /ssd1/treeqmc/avian14k_bs.tre
output file: avian14k_bs.out
weighting mode: hybrid
support min: 0
support max: 100
support default: 0
normalization for artifical taxa mode: n2
execution mode: efficient
random seed for refinement: 12345
random seed for max-cut: 1
max-cut heuristic iteration limit: 10
LOGGING:
Reading input
Found
14446 trees
48 taxa
0 polytomies across all trees
Constructing species tree
At most 91 subproblems:
0 subproblems computed.
Parlay time: total: 1.5724
Parlay time: total: 1.6315
Parlay time: total: 1.6828
Parlay time: total: 1.7424
Parlay time: total: 2.6342
Parlay time: total: 4.1765
10 subproblems computed.
Parlay time: total: 4.3603
Parlay time: total: 4.5091
Parlay time: total: 4.6731
Parlay time: total: 4.8158
Parlay time: total: 4.9157
Parlay time: total: 5.0215
20 subproblems computed.
Parlay time: total: 5.1098
Parlay time: total: 5.1995
Parlay time: total: 5.2878
Parlay time: total: 5.3580
30 subproblems computed.
Parlay time: total: 5.4352
Parlay time: total: 5.5319
Parlay time: total: 5.6136
Parlay time: total: 6.2080
Parlay time: total: 6.5014
Parlay time: total: 6.8346
40 subproblems computed.
Parlay time: total: 7.1493
Parlay time: total: 7.2825
Parlay time: total: 7.4151
Parlay time: total: 7.5746
Parlay time: total: 7.7945
Parlay time: total: 7.8633
Parlay time: total: 7.9978
50 subproblems computed.
Parlay time: total: 8.0997
Parlay time: total: 8.1903
Parlay time: total: 8.2984
60 subproblems computed.
Parlay time: total: 8.4126
Parlay time: total: 8.4831
Parlay time: total: 8.6068
Parlay time: total: 8.6955
Parlay time: total: 8.8236
70 subproblems computed.
Parlay time: total: 8.9209
Parlay time: total: 9.2131
Parlay time: total: 9.2962
Parlay time: total: 9.3812
80 subproblems computed.
Parlay time: total: 9.4711
Parlay time: total: 9.5391
Parlay time: total: 9.6027
Parlay time: total: 9.6942
90 subproblems computed.
91 subproblems computed.
Printing species tree
(((((GEOFO,TAEGU),CORBR),MANVI),ACACH),(((((((((((MELGA,GALGA),ANAPL),(TINMA,STRCA)),((PODCR,PHORU),(((PTEGU,MESUN),COLLI),((TAUER,CHLUN),CUCCA)))),((CALAN,CHAPE),CAPCA)),((((((APTFO,PYGAD),FULGL),(((EGRGA,PELCR),NIPNI),PHACA)),GAVST),(EURHE,PHALE)),((BALRE,CHAVO),OPHHO))),(((HALLE,HALAL),CATAU),TYTAL)),(((((MERNU,PICPU),BUCRH),APAVI),LEPDI),COLST)),CARCR),FALPE),(MELUN,NESNO)));
Writing species tree
Parlay time: Execution time: : 13.2144
48,45,45,0,0,0.000000
Running on CNEE_abayes_gene_trees_sorted.tre
rm: cannot remove 'CNEE_abayes_gene_trees_sorted.out': No such file or directory
TREE-QMC version 3.0.4
COMMAND: ./tree-qmc --hybrid --bootstrap -i /ssd1/treeqmc/CNEE_abayes_gene_trees_sorted.tre -o CNEE_abayes_gene_trees_sorted.out
SETTINGS:
input file: /ssd1/treeqmc/CNEE_abayes_gene_trees_sorted.tre
output file: CNEE_abayes_gene_trees_sorted.out
weighting mode: hybrid
support min: 0
support max: 100
support default: 0
normalization for artifical taxa mode: n2
execution mode: efficient
random seed for refinement: 12345
random seed for max-cut: 1
max-cut heuristic iteration limit: 10
LOGGING:
Reading input
Found
12676 trees
15 taxa
0 polytomies across all trees
Constructing species tree
At most 25 subproblems:
0 subproblems computed.
Parlay time: total: 0.1855
Parlay time: total: 0.2300
Parlay time: total: 0.2653
Parlay time: total: 0.3028
Parlay time: total: 0.4057
Parlay time: total: 0.4717
10 subproblems computed.
Parlay time: total: 0.5328
Parlay time: total: 0.5952
Parlay time: total: 0.6452
Parlay time: total: 0.6944
20 subproblems computed.
Parlay time: total: 0.7394
Parlay time: total: 0.7797
25 subproblems computed.
Printing species tree
((((cryCin,tinGut),(eudEle,notPer)),anoDid),(((((aptHaa,aptOwe),(aptRow,aptMan)),(casCas,droNov)),(rheAme,rhePen)),(strCam,galGal)));
Writing species tree
Parlay time: Execution time: : 1.3761
15,12,12,0,0,0.000000
Running on zhang_papilionidae.tre
rm: cannot remove 'zhang_papilionidae.out': No such file or directory
TREE-QMC version 3.0.4
COMMAND: ./tree-qmc --hybrid --bootstrap -i /ssd1/treeqmc/zhang_papilionidae.tre -o zhang_papilionidae.out
SETTINGS:
input file: /ssd1/treeqmc/zhang_papilionidae.tre
output file: zhang_papilionidae.out
weighting mode: hybrid
support min: 0
support max: 100
support default: 0
normalization for artifical taxa mode: n2
execution mode: efficient
random seed for refinement: 12345
random seed for max-cut: 1
max-cut heuristic iteration limit: 10
LOGGING:
Reading input
WARNING: Input tree on line 348 has fewer than 4 species so ignoring
WARNING: Input tree on line 3996 has fewer than 4 species so ignoring
WARNING: Input tree on line 4474 has fewer than 4 species so ignoring
WARNING: Input tree on line 4760 has fewer than 4 species so ignoring
WARNING: Input tree on line 5154 has fewer than 4 species so ignoring
WARNING: Input tree on line 5252 has fewer than 4 species so ignoring
WARNING: Input tree on line 5387 has fewer than 4 species so ignoring
Found
6398 trees
61 taxa
0 polytomies across all trees
Constructing species tree
At most 117 subproblems:
0 subproblems computed.
Parlay time: total: 1.0215
Parlay time: total: 1.5682
Parlay time: total: 1.7851
Parlay time: total: 1.8397
Parlay time: total: 1.8735
Parlay time: total: 1.9077
Parlay time: total: 1.9622
10 subproblems computed.
Parlay time: total: 1.9906
Parlay time: total: 2.0298
Parlay time: total: 2.0703
Parlay time: total: 2.1166
Parlay time: total: 2.1800
20 subproblems computed.
Parlay time: total: 2.4055
Parlay time: total: 2.5108
Parlay time: total: 2.6859
Parlay time: total: 2.7649
Parlay time: total: 2.8162
Parlay time: total: 2.8606
30 subproblems computed.
Parlay time: total: 2.9059
Parlay time: total: 2.9532
Parlay time: total: 2.9890
Parlay time: total: 3.0258
40 subproblems computed.
Parlay time: total: 3.0689
Parlay time: total: 3.1137
Parlay time: total: 3.1513
Parlay time: total: 3.1917
Parlay time: total: 3.2265
50 subproblems computed.
Parlay time: total: 3.2715
Parlay time: total: 3.3130
Parlay time: total: 3.3647
Parlay time: total: 3.4009