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imaging.yaml
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---
install_resolver_dependencies: true
install_tool_dependencies: false
tools:
- name: color_deconvolution
owner: imgteam
tool_panel_section_label: "Imaging"
- name: 2d_histogram_equalization
owner: imgteam
tool_panel_section_label: "Imaging"
- name: 2d_simple_filter
owner: imgteam
tool_panel_section_label: "Imaging"
- name: anisotropic_diffusion
owner: imgteam
tool_panel_section_label: "Imaging"
- name: 2d_auto_threshold
owner: imgteam
tool_panel_section_label: "Imaging"
- name: 2d_local_threshold
owner: imgteam
tool_panel_section_label: "Imaging"
- name: landmark_registration
owner: imgteam
tool_panel_section_label: "Imaging"
- name: landmark_registration_ls
owner: imgteam
tool_panel_section_label: "Imaging"
- name: image_registration_affine
owner: imgteam
tool_panel_section_label: "Imaging"
- name: projective_transformation
owner: imgteam
tool_panel_section_label: "Imaging"
- name: projective_transformation_points
owner: imgteam
tool_panel_section_label: "Imaging"
- name: imagecoordinates_flipaxis
owner: imgteam
tool_panel_section_label: "Imaging"
- name: 2d_split_binaryimage_by_watershed
owner: imgteam
tool_panel_section_label: "Imaging"
- name: 2d_filter_segmentation_by_features
owner: imgteam
tool_panel_section_label: "Imaging"
- name: binary2labelimage
owner: imgteam
tool_panel_section_label: "Imaging"
- name: binaryimage2points
owner: imgteam
tool_panel_section_label: "Imaging"
- name: mergeneighboursinlabelimage
owner: imgteam
tool_panel_section_label: "Imaging"
- name: scale_image
owner: imgteam
tool_panel_section_label: "Imaging"
- name: slice_image
owner: imgteam
tool_panel_section_label: "Imaging"
- name: split_labelmap
owner: imgteam
tool_panel_section_label: "Imaging"
- name: concat_channels
owner: imgteam
tool_panel_section_label: "Imaging"
- name: points2binaryimage
owner: imgteam
tool_panel_section_label: "Imaging"
- name: points2labelimage
owner: imgteam
tool_panel_section_label: "Imaging"
- name: labelimage2points
owner: imgteam
tool_panel_section_label: "Imaging"
- name: permutate_axis
owner: imgteam
tool_panel_section_label: "Imaging"
- name: mahotas_features
owner: imgteam
tool_panel_section_label: "Imaging"
- name: 2d_feature_extraction
owner: imgteam
tool_panel_section_label: "Imaging"
- name: count_objects
owner: imgteam
tool_panel_section_label: "Imaging"
- name: coordinates_of_roi
owner: imgteam
tool_panel_section_label: "Imaging"
- name: detection_viz
owner: imgteam
tool_panel_section_label: "Imaging"
- name: colocalization_viz
owner: imgteam
tool_panel_section_label: "Imaging"
- name: overlay_moving_and_fixed_image
owner: imgteam
tool_panel_section_label: "Imaging"
- name: overlay_segmentation_mask
owner: imgteam
tool_panel_section_label: "Imaging"
- name: wsi_extract_top_view
owner: imgteam
tool_panel_section_label: "Imaging"
- name: visceral_evaluatesegmentation
owner: imgteam
tool_panel_section_label: "Imaging"
- name: bfconvert
owner: imgteam
tool_panel_section_label: "Imaging"
- name: image_info
owner: imgteam
tool_panel_section_label: "Imaging"
- name: imagej2_binary_to_edm
owner: imgteam
tool_panel_section_label: "Imaging"
- name: imagej2_bunwarpj_compare_elastic_raw
owner: imgteam
tool_panel_section_label: "Imaging"
- name: imagej2_bunwarpj_compose_raw_elastic
owner: imgteam
tool_panel_section_label: "Imaging"
- name: imagej2_analyze_particles_binary
owner: imgteam
tool_panel_section_label: "Imaging"
- name: imagej2_skeletonize3d
owner: imgteam
tool_panel_section_label: "Imaging"
- name: imagej2_create_image
owner: imgteam
tool_panel_section_label: "Imaging"
- name: imagej2_noise
owner: imgteam
tool_panel_section_label: "Imaging"
- name: imagej2_find_edges
owner: imgteam
tool_panel_section_label: "Imaging"
- name: imagej2_shadows
owner: imgteam
tool_panel_section_label: "Imaging"
- name: imagej2_bunwarpj_compose_raw
owner: imgteam
tool_panel_section_label: "Imaging"
- name: imagej2_enhance_contrast
owner: imgteam
tool_panel_section_label: "Imaging"
- name: imagej2_find_maxima
owner: imgteam
tool_panel_section_label: "Imaging"
- name: imagej2_bunwarpj_align
owner: imgteam
tool_panel_section_label: "Imaging"
- name: imagej2_watershed_binary
owner: imgteam
tool_panel_section_label: "Imaging"
- name: imagej2_bunwarpj_raw_transform
owner: imgteam
tool_panel_section_label: "Imaging"
- name: imagej2_smooth
owner: imgteam
tool_panel_section_label: "Imaging"
- name: imagej2_analyze_skeleton
owner: imgteam
tool_panel_section_label: "Imaging"
- name: imagej2_bunwarpj_compare_elastic
owner: imgteam
tool_panel_section_label: "Imaging"
- name: imagej2_bunwarpj_compare_raw
owner: imgteam
tool_panel_section_label: "Imaging"
- name: imagej2_bunwarpj_convert_to_raw
owner: imgteam
tool_panel_section_label: "Imaging"
- name: imagej2_make_binary
owner: imgteam
tool_panel_section_label: "Imaging"
- name: imagej2_sharpen
owner: imgteam
tool_panel_section_label: "Imaging"
- name: imagej2_bunwarpj_compose_elastic
owner: imgteam
tool_panel_section_label: "Imaging"
- name: imagej2_adjust_threshold_binary
owner: imgteam
tool_panel_section_label: "Imaging"
- name: imagej2_math
owner: imgteam
tool_panel_section_label: "Imaging"
- name: imagej2_bunwarpj_elastic_transform
owner: imgteam
tool_panel_section_label: "Imaging"
- name: imagej2_bunwarpj_adapt_transform
owner: imgteam
tool_panel_section_label: "Imaging"
- name: cp_cellprofiler
owner: bgruening
tool_panel_section_label: "Imaging"
- name: cp_common
owner: bgruening
tool_panel_section_label: "Imaging"
- name: cp_color_to_gray
owner: bgruening
tool_panel_section_label: "Imaging"
- name: cp_tile
owner: bgruening
tool_panel_section_label: "Imaging"
- name: cp_track_objects
owner: bgruening
tool_panel_section_label: "Imaging"
- name: cp_overlay_outlines
owner: bgruening
tool_panel_section_label: "Imaging"
- name: cp_convert_objects_to_image
owner: bgruening
tool_panel_section_label: "Imaging"
- name: cp_display_data_on_image
owner: bgruening
tool_panel_section_label: "Imaging"
- name: cp_enhance_or_suppress_features
owner: bgruening
tool_panel_section_label: "Imaging"
- name: cp_export_to_spreadsheet
owner: bgruening
tool_panel_section_label: "Imaging"
- name: cp_gray_to_color
owner: bgruening
tool_panel_section_label: "Imaging"
- name: cp_identify_primary_objects
owner: bgruening
tool_panel_section_label: "Imaging"
- name: cp_mask_image
owner: bgruening
tool_panel_section_label: "Imaging"
- name: cp_measure_granularity
owner: bgruening
tool_panel_section_label: "Imaging"
- name: cp_measure_image_area_occupied
owner: bgruening
tool_panel_section_label: "Imaging"
- name: cp_measure_image_intensity
owner: bgruening
tool_panel_section_label: "Imaging"
- name: cp_measure_image_quality
owner: bgruening
tool_panel_section_label: "Imaging"
- name: cp_measure_object_intensity
owner: bgruening
tool_panel_section_label: "Imaging"
- name: cp_measure_object_size_shape
owner: bgruening
tool_panel_section_label: "Imaging"
- name: cp_measure_texture
owner: bgruening
tool_panel_section_label: "Imaging"
- name: cp_relate_objects
owner: bgruening
tool_panel_section_label: "Imaging"
- name: cp_save_images
owner: bgruening
tool_panel_section_label: "Imaging"
- name: cp_image_math
owner: bgruening
tool_panel_section_label: "Imaging"