From 36b37160a0f6fa6497fb628d56ccb2dbb30fca45 Mon Sep 17 00:00:00 2001 From: Thomas Kuilman Date: Tue, 19 Aug 2014 17:49:32 +0200 Subject: [PATCH] Make captureRegionsBedFile optional --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index a3e0811..0eed2b9 100644 --- a/README.md +++ b/README.md @@ -79,13 +79,13 @@ Minor bugs # Changes and additions we are currently working on - [ ] Extract binSize from bins.bed file -- [ ] Make captureRegionsBedFile optional - [ ] Different input structure to indicate which bam files should be used as controls - [ ] Change from MACS 1.4 to other ChIP seq tool available in R (chipseq from bioconductor?) - [ ] Change from Samtools to Rsamtools - [ ] Remove all unix specific functions and commands - [ ] Clean up code - [ ] Compile into bioConductor package +- [x] Make captureRegionsBedFile optional - [x] Allow processing of single-end sequences - [x] Increase speed for generating bins in `preENCODER`