DESCRIPTION

Package: plotgardener
Title: Coordinate-Based Genomic Visualization Package for R
Version: 1.10.2
Date: 2024-06-28
Author: Nicole Kramer [aut, cre], Eric S. Davis [aut], Craig Wenger [aut],
    Sarah Parker [ctb], Erika Deoudes [art], Michael Love [ctb],
    Douglas H. Phanstiel [aut, cre, cph]
Maintainer: Nicole Kramer <nekramer27@gmail.com>,
            Douglas Phanstiel <douglas_phanstiel@med.unc.edu>
Description: 
    Coordinate-based genomic visualization package for R. It grants users
    the ability to programmatically produce complex, multi-paneled figures. Tailored for
    genomics, plotgardener allows users to visualize large complex genomic datasets and
    provides exquisite control over how plots are placed and arranged on a page. 
Depends: R (>= 4.1.0)
License: MIT + file LICENSE
URL: https://phanstiellab.github.io/plotgardener, https://github.com/PhanstielLab/plotgardener
Encoding: UTF-8
RoxygenNote: 7.3.1
Imports:
    curl,
    data.table,
    dplyr,
    GenomeInfoDb,
    GenomicRanges,
    grDevices,
    grid,
    ggplotify,
    IRanges,
    methods,
    plyranges,
    purrr,
    Rcpp,
    RColorBrewer,
    rlang,
    stats,
    strawr,
    tools,
    utils,
    withr
biocViews: 
    Visualization, 
    GenomeAnnotation, 
    FunctionalGenomics, 
    GenomeAssembly,
    HiC
LinkingTo: 
    Rcpp
Suggests:
    AnnotationDbi,
    AnnotationHub,
    BSgenome,
    BSgenome.Hsapiens.UCSC.hg19,
    ComplexHeatmap,
    GenomicFeatures,
    ggplot2,
    InteractionSet,
    knitr,
    org.Hs.eg.db,
    rtracklayer,
    plotgardenerData,
    pdftools,
    png,
    rmarkdown,
    scales,
    showtext,
    testthat (>= 3.0.0),
    TxDb.Hsapiens.UCSC.hg19.knownGene
VignetteBuilder: knitr
Config/testthat/edition: 3
BugReports: https://github.com/PhanstielLab/plotgardener/issues