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ido_dev.owl
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ido_dev.owl
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<?xml version="1.0"?>
<rdf:RDF xmlns="http://purl.obolibrary.org/obo/ido/ido_dev.owl#"
xml:base="http://purl.obolibrary.org/obo/ido/ido_dev.owl"
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:owl="http://www.w3.org/2002/07/owl#"
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"
xmlns:xml="http://www.w3.org/XML/1998/namespace"
xmlns:protege="http://protege.stanford.edu/plugins/owl/protege#"
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:obo="http://purl.obolibrary.org/obo/"
xmlns:foaf="http://xmlns.com/foaf/0.1/"
xmlns:dc="http://purl.org/dc/elements/1.1/">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/ido/ido_dev.owl">
<owl:imports rdf:resource="http://purl.obolibrary.org/obo/ido/ido-external-by-hand.owl"/>
<owl:imports rdf:resource="http://purl.obolibrary.org/obo/ido/ido-obsolete.owl"/>
<owl:imports rdf:resource="http://purl.obolibrary.org/obo/bfo/2014-05-03/classes-only.owl"/>
<owl:imports rdf:resource="http://purl.obolibrary.org/obo/ro/core.owl"/>
<owl:imports rdf:resource="http://purl.obolibrary.org/obo/ido/import_OBO.owl"/>
<owl:imports rdf:resource="http://purl.obolibrary.org/obo/iao/ontology-metadata.owl"/>
<dc:creator>Alexander Diehl</dc:creator>
<rdfs:seeAlso>http://www.infectiousdiseaseontology.org/</rdfs:seeAlso>
<rdfs:comment xml:lang="en">Attribution (CC 3 BY License): You must give appropriate credit, provide a link to the license, and indicate if changes were made. You may do so in any reasonable manner, but not in any way that suggests the licensor endorses you or your use.</rdfs:comment>
<dc:creator>Albert Goldfain</dc:creator>
<dc:date rdf:datatype="http://www.w3.org/2001/XMLSchema#date">2010-05-19</dc:date>
<dc:creator>Alan Ruttenberg</dc:creator>
<dc:creator>Bjoern Peters</dc:creator>
<rdfs:comment xml:lang="en">The core Infectious Disease Ontology is an ontology of entities generally relevant to both the biomedical and clinical aspects of infectious diseases, including terms such as 'pathogen', 'host', 'vector', and 'vaccine'. The structure of IDO adheres to the Basic Formal Ontology. Terms in IDO that are within the scope of other OBO Foundry ontologies, such as the Gene Ontology, are derived from those ontologies. Other terms are defined as cross-products of terms from Foundry ontologies to the extent possible. For more information, see http://www.infectiousdiseaseontology.org/Home.html. </rdfs:comment>
<dc:license>Creative Commons 3.0 BY</dc:license>
<dc:creator>Jie Zheng</dc:creator>
<protege:defaultLanguage>en</protege:defaultLanguage>
<dc:creator>Lindsay Cowell</dc:creator>
<rdfs:comment xml:lang="en">This ontology is in early development. Expect it to change.</rdfs:comment>
<dc:creator>Barry Smith</dc:creator>
</owl:Ontology>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Annotation properties
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://protege.stanford.edu/plugins/owl/protege#defaultLanguage -->
<owl:AnnotationProperty rdf:about="http://protege.stanford.edu/plugins/owl/protege#defaultLanguage"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000115 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000115"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000116 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000116"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000117 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000117"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000118 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000118"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000119 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000119"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000412 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000412"/>
<!-- http://purl.org/dc/elements/1.1/contributor -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/contributor"/>
<!-- http://purl.org/dc/elements/1.1/creator -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/creator"/>
<!-- http://purl.org/dc/elements/1.1/date -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/date"/>
<!-- http://www.w3.org/2000/01/rdf-schema#comment -->
<owl:AnnotationProperty rdf:about="http://www.w3.org/2000/01/rdf-schema#comment"/>
<!-- http://www.w3.org/2000/01/rdf-schema#label -->
<owl:AnnotationProperty rdf:about="http://www.w3.org/2000/01/rdf-schema#label"/>
<!-- http://www.w3.org/2000/01/rdf-schema#seeAlso -->
<owl:AnnotationProperty rdf:about="http://www.w3.org/2000/01/rdf-schema#seeAlso"/>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Object Properties
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://purl.obolibrary.org/obo/BFO_0000050 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BFO_0000050">
<owl:inverseOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/BFO_0000051 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BFO_0000051">
<rdfs:subPropertyOf rdf:resource="http://www.w3.org/2002/07/owl#topObjectProperty"/>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#TransitiveProperty"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/BFO_0000054 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BFO_0000054"/>
<!-- http://purl.obolibrary.org/obo/BFO_0000055 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BFO_0000055"/>
<!-- http://purl.obolibrary.org/obo/BFO_0000062 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BFO_0000062"/>
<!-- http://purl.obolibrary.org/obo/BFO_0000063 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BFO_0000063"/>
<!-- http://purl.obolibrary.org/obo/BFO_0000066 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BFO_0000066"/>
<!-- http://purl.obolibrary.org/obo/IDO_0000660 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/IDO_0000660">
<rdfs:label xml:lang="en">results_in</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/IDO_0000664 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/IDO_0000664">
<rdfs:range rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
<rdfs:label>has_material_basis_in</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0000052 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0000052"/>
<!-- http://purl.obolibrary.org/obo/RO_0000053 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0000053"/>
<!-- http://purl.obolibrary.org/obo/RO_0000056 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0000056"/>
<!-- http://purl.obolibrary.org/obo/RO_0000057 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0000057"/>
<!-- http://purl.obolibrary.org/obo/RO_0000085 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0000085"/>
<!-- http://purl.obolibrary.org/obo/RO_0000087 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0000087"/>
<!-- http://purl.obolibrary.org/obo/RO_0000091 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0000091"/>
<!-- http://purl.obolibrary.org/obo/RO_0001015 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0001015"/>
<!-- http://purl.obolibrary.org/obo/RO_0001025 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0001025"/>
<!-- http://purl.obolibrary.org/obo/RO_0002212 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002212"/>
<!-- http://purl.obolibrary.org/obo/RO_0002213 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002213"/>
<!-- http://purl.obolibrary.org/obo/RO_0002215 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002215"/>
<!-- http://purl.obolibrary.org/obo/RO_0002234 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002234"/>
<!-- http://purl.obolibrary.org/obo/RO_0002297 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002297"/>
<!-- http://www.w3.org/2002/07/owl#topObjectProperty -->
<owl:ObjectProperty rdf:about="http://www.w3.org/2002/07/owl#topObjectProperty"/>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Classes
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://purl.obolibrary.org/obo/BFO_0000015 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000015"/>
<!-- http://purl.obolibrary.org/obo/BFO_0000016 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000016"/>
<!-- http://purl.obolibrary.org/obo/BFO_0000019 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000019"/>
<!-- http://purl.obolibrary.org/obo/BFO_0000023 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000023"/>
<!-- http://purl.obolibrary.org/obo/BFO_0000027 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000027"/>
<!-- http://purl.obolibrary.org/obo/BFO_0000038 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000038"/>
<!-- http://purl.obolibrary.org/obo/BFO_0000040 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000040"/>
<!-- http://purl.obolibrary.org/obo/CARO_0000000 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/CARO_0000000">
<owl:disjointWith rdf:resource="http://purl.obolibrary.org/obo/IDO_0000504"/>
<owl:disjointWith rdf:resource="http://purl.obolibrary.org/obo/IDO_0000528"/>
<owl:disjointWith rdf:resource="http://purl.obolibrary.org/obo/IDO_0000544"/>
<owl:disjointWith rdf:resource="http://purl.obolibrary.org/obo/IDO_0000555"/>
<owl:disjointWith rdf:resource="http://purl.obolibrary.org/obo/IDO_0000556"/>
<owl:disjointWith rdf:resource="http://purl.obolibrary.org/obo/IDO_0000558"/>
<owl:disjointWith rdf:resource="http://purl.obolibrary.org/obo/IDO_0000559"/>
<owl:disjointWith rdf:resource="http://purl.obolibrary.org/obo/IDO_0000560"/>
<owl:disjointWith rdf:resource="http://purl.obolibrary.org/obo/IDO_0000561"/>
<owl:disjointWith rdf:resource="http://purl.obolibrary.org/obo/IDO_0000562"/>
<owl:disjointWith rdf:resource="http://purl.obolibrary.org/obo/IDO_0000586"/>
<owl:disjointWith rdf:resource="http://purl.obolibrary.org/obo/IDO_0000617"/>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/CHEBI_23367 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/CHEBI_23367"/>
<!-- http://purl.obolibrary.org/obo/CL_0000000 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/CL_0000000"/>
<!-- http://purl.obolibrary.org/obo/CL_0000738 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/CL_0000738"/>
<!-- http://purl.obolibrary.org/obo/GO_0000003 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0000003"/>
<!-- http://purl.obolibrary.org/obo/GO_0002250 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0002250"/>
<!-- http://purl.obolibrary.org/obo/GO_0002443 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0002443"/>
<!-- http://purl.obolibrary.org/obo/GO_0006955 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0006955"/>
<!-- http://purl.obolibrary.org/obo/GO_0006959 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0006959"/>
<!-- http://purl.obolibrary.org/obo/GO_0008150 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0008150"/>
<!-- http://purl.obolibrary.org/obo/GO_0019814 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0019814"/>
<!-- http://purl.obolibrary.org/obo/GO_0019815 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0019815"/>
<!-- http://purl.obolibrary.org/obo/GO_0032502 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0032502"/>
<!-- http://purl.obolibrary.org/obo/GO_0042101 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0042101"/>
<!-- http://purl.obolibrary.org/obo/GO_0043093 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0043093"/>
<!-- http://purl.obolibrary.org/obo/GO_0044403 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0044403"/>
<!-- http://purl.obolibrary.org/obo/GO_0044406 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0044406"/>
<!-- http://purl.obolibrary.org/obo/GO_0044411 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0044411"/>
<!-- http://purl.obolibrary.org/obo/GO_0045087 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0045087"/>
<!-- http://purl.obolibrary.org/obo/GO_0048525 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0048525"/>
<!-- http://purl.obolibrary.org/obo/GO_0051234 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0051234">
<obo:IAO_0000412>Gene Ontology: http://purl.obolibrary.org/obo/go.owl</obo:IAO_0000412>
<rdfs:label>establishment of localization</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/GO_0065007 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0065007"/>
<!-- http://purl.obolibrary.org/obo/GO_0085030 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0085030"/>
<!-- http://purl.obolibrary.org/obo/GO_0085031 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0085031"/>
<!-- http://purl.obolibrary.org/obo/IDO_0000400 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000400">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000023"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000052"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0100026"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000056"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/GO_0044403"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</rdfs:subClassOf>
<owl:disjointWith rdf:resource="http://purl.obolibrary.org/obo/IDO_0000405"/>
<owl:disjointWith rdf:resource="http://purl.obolibrary.org/obo/IDO_0000417"/>
<owl:disjointWith rdf:resource="http://purl.obolibrary.org/obo/IDO_0000424"/>
<owl:disjointWith rdf:resource="http://purl.obolibrary.org/obo/IDO_0000430"/>
<owl:disjointWith rdf:resource="http://purl.obolibrary.org/obo/IDO_0000431"/>
<owl:disjointWith rdf:resource="http://purl.obolibrary.org/obo/IDO_0000432"/>
<owl:disjointWith rdf:resource="http://purl.obolibrary.org/obo/IDO_0000433"/>
<owl:disjointWith rdf:resource="http://purl.obolibrary.org/obo/IDO_0000434"/>
<owl:disjointWith rdf:resource="http://purl.obolibrary.org/obo/IDO_0000435"/>
<owl:disjointWith rdf:resource="http://purl.obolibrary.org/obo/IDO_0000629"/>
<owl:disjointWith rdf:resource="http://purl.obolibrary.org/obo/IDO_0000635"/>
<obo:IAO_0000115 xml:lang="en">A role borne by an organism in symbiosis.</obo:IAO_0000115>
<obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
<obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
<obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
<rdfs:comment>The role is realized in symbiosis.</rdfs:comment>
<rdfs:label xml:lang="en">symbiont role</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IDO_0000401 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000401">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IDO_0000400"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000052"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0100026"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000056"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/GO_0085030"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000115 xml:lang="en">A symbiont role borne by an organism in virtue of the fact that both symbionts derive a growth, survival, or fitness advantage from symbiosis.</obo:IAO_0000115>
<obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
<obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
<obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
<rdfs:comment>The role is realized in processes that result in the growth, survival, or fitness advantage of either organism.</rdfs:comment>
<rdfs:label xml:lang="en">mutualist role</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IDO_0000402 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000402">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IDO_0000400"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000052"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0100026"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000056"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/GO_0085031"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000115 xml:lang="en">A symbiont role borne by an organism in virtue of the fact that it derives a growth, survival, or fitness advantage from symbiosis, but the other symbiont is neither advantaged nor disadvantaged.</obo:IAO_0000115>
<obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
<obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
<obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
<rdfs:comment>The role is realized in processes that result in the commensal's growth, survival, or fitness advantage.</rdfs:comment>
<rdfs:label xml:lang="en">commensal role</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IDO_0000403 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000403">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IDO_0000400"/>
<obo:IAO_0000115 xml:lang="en">A symbiont role borne by an organism in virtue of the fact that it derives a growth, survival, or fitness advantage from symbiosis while the other symbiont's growth, survival, or fitness is reduced.</obo:IAO_0000115>
<obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
<obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
<obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
<rdfs:comment>In the medical community, the term 'parasite' is used with the narrower meaning of eukaryotic pathogen.</rdfs:comment>
<rdfs:comment>The role is realized in processes that result in the parasite's growth, survival, or fitness advantage or in the other organism's growth, survival, or fitness reduction.</rdfs:comment>
<rdfs:label xml:lang="en">parasite role</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IDO_0000404 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000404">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IDO_0000405"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000052"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/IDO_0000596"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0001025"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IDO_0000531"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000115 xml:lang="en">A role borne by an infectious agent when contained in a host in which its infectious disposition can be realized.</obo:IAO_0000115>
<obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
<obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
<obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
<rdfs:label xml:lang="en">infectious agent role</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IDO_0000405 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000405">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000023"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000052"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IDO_0000528"/>
</owl:Restriction>
</rdfs:subClassOf>
<owl:disjointWith rdf:resource="http://purl.obolibrary.org/obo/IDO_0000417"/>
<owl:disjointWith rdf:resource="http://purl.obolibrary.org/obo/IDO_0000424"/>
<owl:disjointWith rdf:resource="http://purl.obolibrary.org/obo/IDO_0000430"/>
<owl:disjointWith rdf:resource="http://purl.obolibrary.org/obo/IDO_0000431"/>
<owl:disjointWith rdf:resource="http://purl.obolibrary.org/obo/IDO_0000432"/>
<owl:disjointWith rdf:resource="http://purl.obolibrary.org/obo/IDO_0000433"/>
<owl:disjointWith rdf:resource="http://purl.obolibrary.org/obo/IDO_0000434"/>
<owl:disjointWith rdf:resource="http://purl.obolibrary.org/obo/IDO_0000435"/>
<owl:disjointWith rdf:resource="http://purl.obolibrary.org/obo/IDO_0000629"/>
<owl:disjointWith rdf:resource="http://purl.obolibrary.org/obo/IDO_0000635"/>
<obo:IAO_0000115 xml:lang="en">A role borne by pathogen in virtue of the fact that it or one of its products is sufficiently close to an organism towards which it has the pathogenic disposition to allow realization of the pathogenic disposition.</obo:IAO_0000115>
<obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
<obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
<obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
<rdfs:comment>Clostridium botulinum is an example of an entity with the capability to bear the pathogen role but that does not have the capability to bear the infectious agent role or the parasite role. The influenza viruses are examples of organisms that can bear both the infectious agent and pathogen roles.</rdfs:comment>
<rdfs:label xml:lang="en">pathogen role</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IDO_0000406 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000406">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IDO_0000452"/>
<rdfs:subClassOf>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000052"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0100026"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000054"/>
<owl:allValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000015"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IDO_0000625"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/TRANS_0000000"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/IDO_0000626"/>
<owl:Class>
<owl:complementOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000066"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IDO_0000457"/>
</owl:Restriction>
</owl:complementOf>
</owl:Class>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:allValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</rdfs:subClassOf>
<obo:IAO_0000115 xml:lang="en">An infectious disposition to become part of a disorder only in organisms whose defenses are compromised.</obo:IAO_0000115>
<obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
<obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
<obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
<obo:IAO_0000118 xml:lang="en">opportunitistic pathogenic disposition</obo:IAO_0000118>
<rdfs:comment>The disposition is realized in a process by which the bearer becomes part of a disorder in an immunocompromised host.</rdfs:comment>
<rdfs:comment xml:lang="en">This includes individuals who are immunocompromised or who have damaged barriers that normally protect against infection (e.g. skin).</rdfs:comment>
<rdfs:label xml:lang="en">opportunistic infectious disposition</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IDO_0000407 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000407">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/IDO_0000452"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000054"/>
<owl:allValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000015"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IDO_0000625"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/TRANS_0000000"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/IDO_0000626"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000066"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IDO_0000457"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:allValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IDO_0000452"/>
<obo:IAO_0000115 xml:lang="en">An infectious disposition to become part of a disorder in organisms that have intact defenses.</obo:IAO_0000115>
<obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
<obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
<obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
<rdfs:comment>A pathogen with a primary infectious disposition can cause disease or death in both immunocompromised and immunocompetent hosts.</rdfs:comment>
<rdfs:comment>A quote from page 3 of Mandell's "Principles and Practice of Infectious Diseases" (Sixth edition): "It is useful to distinguish "principal" pathogens, which regularly cause disease in some proportion of susceptible individuals with apparently intact defense systems, from other potentially pathogenic microorganisms. ... even for most organisms classified as principal pathogens, for example, Staphylococcus aureus and the pneumococcus, some impairment or local breakdown in normal host defense mechanisms must occur for these bacteria to cause disease. ... Thus, it seems clear that the capacity of certain microorganisms to cause disease in seemingly uncompromised human hosts on a regular basis reflects some fundamental difference in their virulence capabilities from those of opportunists and the more numerous commensal species that rarely, if ever, cause disease."</rdfs:comment>
<rdfs:label xml:lang="en">primary infectious disposition</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IDO_0000408 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000408">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IDO_0000629"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000052"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0100026"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OGMS_0000087"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IDO_0000522"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</rdfs:subClassOf>
<owl:disjointWith rdf:resource="http://purl.obolibrary.org/obo/IDO_0000415"/>
<obo:IAO_0000115 xml:lang="en">A host role borne by an organism in virtue of the fact that its extended organism contains a second organism and provides an environment supportive for the survival, growth, maturation, or reproduction of that organism. </obo:IAO_0000115>
<obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
<obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
<obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
<rdfs:comment>The relevant environmental resources may include nutrient resources, warmth, or moisture.</rdfs:comment>
<rdfs:comment>The role is realized in processes in which the host makes the relevant environmental resources available to its partner in symbiosis. A bearer of a symbiont host role is bearer also of a symbiont role.</rdfs:comment>
<rdfs:label xml:lang="en">symbiont host role</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IDO_0000409 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000409">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IDO_0000408"/>
<obo:IAO_0000115 xml:lang="en">A symbiont host role borne by an organism in virtue of the fact that its partner in symbiosis reaches developmental maturity or reproduces sexually in the host. </obo:IAO_0000115>
<obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
<obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
<obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
<obo:IAO_0000118 xml:lang="en">primary host role</obo:IAO_0000118>
<rdfs:comment>The role is realized in developmental and reproduction processes of the host's partner in symbiosis.</rdfs:comment>
<rdfs:label xml:lang="en">definitive host role</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IDO_0000410 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000410">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IDO_0000408"/>
<obo:IAO_0000115 xml:lang="en">A symbiont host role borne by an organism in virtue of the fact that its partner in symbiosis utilizes the host to undergo a developmental stage transition, and the host is required for continuation of the partner's life cycle.</obo:IAO_0000115>
<obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
<obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
<obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
<obo:IAO_0000118 xml:lang="en">secondary host role</obo:IAO_0000118>
<rdfs:comment>The role is realized in developmental processes of the host's partner in symbiosis.</rdfs:comment>
<rdfs:label xml:lang="en">intermediate host role</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IDO_0000411 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000411">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IDO_0000408"/>
<obo:IAO_0000115 xml:lang="en">A symbiont host role borne by an organism in virtue of the fact that its partner in symbiosis utilizes the host to undergo a developmental stage transition, but the host is not required for continuation of the partner's life cycle. </obo:IAO_0000115>
<obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
<obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
<obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
<rdfs:comment>The role is realized in developmental processes of the host's partner in symbiosis.</rdfs:comment>
<rdfs:label xml:lang="en">paratenic host role</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IDO_0000412 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000412">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IDO_0000408"/>
<obo:IAO_0000115 xml:lang="en">A symbiont host role borne by an organism in virtue of the fact that its partner in symbiosis has the infectious disposition but cannot be transmitted from the host to the partner's definitive host.</obo:IAO_0000115>
<obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
<obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
<obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
<obo:IAO_0000118 xml:lang="en">incidental host role</obo:IAO_0000118>
<rdfs:label xml:lang="en">dead-end host role</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IDO_0000413 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000413">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IDO_0000408"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000052"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0100026"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OGMS_0000087"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IDO_0000526"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000115 xml:lang="en">A symbiont host role borne by an organism in virtue of the fact that its partner in symbiosis derives from the host a growth, survival, or fitness advantage while the host's growth, survival, or fitness is reduced.</obo:IAO_0000115>
<obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
<obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
<obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
<rdfs:comment>The partner in symbiosis bears the parasite role.</rdfs:comment>
<rdfs:comment>The role is realized in processes that result in the parasite's growth, survival, or fitness advantage or in the host's growth, survival, or fitness reduction.</rdfs:comment>
<rdfs:label xml:lang="en">parasite host role</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IDO_0000414 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000414">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IDO_0000415"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000052"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0100026"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OGMS_0000087"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IDO_0000596"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000115 xml:lang="en">A pathogen host role borne by an organism in virtue of the fact that its extended organism contains an infectious agent.</obo:IAO_0000115>
<obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
<obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
<obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
<rdfs:comment>By this definition, vectors and other organisms that may not be infected are bearers of the infectious agent host role.</rdfs:comment>
<rdfs:label xml:lang="en">infectious agent host role</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IDO_0000415 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000415">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IDO_0000629"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000052"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0100026"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OGMS_0000087"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IDO_0000528"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>