Adding annotation of potential doublets to anndata obs #861
Workflow file for this run
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#schema: https://github.com/softprops/github-actions-schemas/blob/master/workflow.json | |
name: "Build containers" | |
on: | |
push: | |
branches: [main, dev] | |
tags: | |
- "v*" # Push events to matching v*, i.e. v1.0, v20.15.10 | |
pull_request: | |
branches: [main, dev] | |
workflow_dispatch: | |
permissions: | |
id-token: write | |
actions: write | |
contents: read | |
packages: write | |
jobs: | |
pre_job: | |
continue-on-error: true | |
runs-on: ubuntu-latest | |
# Map a step output to a job output | |
outputs: | |
should_skip: ${{ steps.skip_check.outputs.should_skip }} | |
paths_result: ${{ steps.skip_check.outputs.paths_result }} | |
steps: | |
- id: skip_check | |
uses: fkirc/skip-duplicate-actions@v5 | |
if: ${{ !github.event.act }} | |
with: | |
concurrent_skipping: "same_content_newer" | |
skip_after_successful_duplicate: "true" | |
do_not_skip: '["workflow_dispatch"]' | |
paths_filter: | | |
python: | |
paths: | |
- 'pyproject.toml' | |
- 'poetry.lock' | |
- 'src/pixelator/**' | |
build: | |
name: "Build" | |
runs-on: ubuntu-latest | |
needs: [pre_job] | |
if: needs.pre_job.outputs.paths_result == '{}' || !fromJSON(needs.pre_job.outputs.paths_result).python.should_skip | |
steps: | |
- name: Checkout | |
uses: actions/checkout@v4 | |
with: | |
fetch-depth: 0 | |
fetch-tags: true | |
- name: Set up build environment | |
id: setup_build_env | |
uses: ./.github/actions/setup-image-build-env | |
- name: Build and push images | |
id: build_image | |
uses: ./.github/actions/build-dev-image | |
with: | |
cache-from: "type=registry,ref=ghcr.io/pixelgentechnologies/pixelator:dev-buildcache" | |
cache-to: "type=registry,ref=ghcr.io/pixelgentechnologies/pixelator:dev-buildcache,mode=max" |