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Pipeline fails at TSEBRA step if non-coding transcripts are present in the Liftoff reference GFF #121

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GallVp opened this issue Dec 4, 2024 · 0 comments · Fixed by #122
Open

Pipeline fails at TSEBRA step if non-coding transcripts are present in the Liftoff reference GFF #121

GallVp opened this issue Dec 4, 2024 · 0 comments · Fixed by #122
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0.6.0

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GallVp commented Dec 4, 2024

Description of the bug

If Liftoff creates genes with no CDS features, TSEBRA fails.

These genes can be filtered with gffread -C

Command used and terminal output

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Relevant files

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System information

plant-food-research-open/genepal: 0.5.0
@GallVp GallVp added the bug Something isn't working label Dec 4, 2024
@GallVp GallVp added this to the 0.6.0 milestone Dec 4, 2024
@GallVp GallVp self-assigned this Dec 4, 2024
This was referenced Dec 4, 2024
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@GallVp GallVp linked a pull request Dec 5, 2024 that will close this issue
Fixed TSEBRA failure issue #122
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Fixed TSEBRA failure issue Plant-Food-Research-Open/genepal
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