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annotate transcriptome assembly #79

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CeciliaDeng opened this issue Oct 29, 2024 · 1 comment
Open

annotate transcriptome assembly #79

CeciliaDeng opened this issue Oct 29, 2024 · 1 comment
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discussion needed Further discussion is needed enhancement New feature or request

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@CeciliaDeng
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Description of feature

Dear team,

Sometimes, we don’t have a genome.fasta + gene.gff3 but only have transcriptome assemblies. Could you add a new feature to allow genepal to annotate transcripts.fa as input? Thanks so much!
@CeciliaDeng CeciliaDeng added the enhancement New feature or request label Oct 29, 2024
@GallVp GallVp added the discussion needed Further discussion is needed label Oct 29, 2024
@GallVp
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GallVp commented Oct 29, 2024

To address this, we need to find out,

  • Does BRAKER support transcriptome annotation?
  • Does Liftoff support transcriptome annotation?
  • Does Orthofinder support transcriptome annotation?

@GallVp GallVp removed their assignment Nov 20, 2024
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@CeciliaDeng @GallVp