diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md new file mode 100644 index 000000000..281d5f979 --- /dev/null +++ b/CONTRIBUTING.md @@ -0,0 +1,43 @@ +# Contributing to Helios + +Thanks for contributing to [Helios](https://github.com/PlantSimulationLab/Helios)! + +The following set of guidelines should be taken as suggestion, rather than rules. These are currently a work-in-progress, and will evolve along with the project. + +If you have comments or suggestions, please feel free to [open an issue](https://github.com/PlantSimulationLab/Helios/issues/new) or [submit a pull-request](https://github.com/PlantSimulationLab/Helios/compare) to this file. + +## Editing Documentation + +Documentation source files for the Helios core can be found in `doc/UserGuide.dox`, and for each plugin in the corresponding plug-in directory sub-folder `doc/*.dox`. These files are written in [Doxygen](https://www.doxygen.nl/index.html) format. Additionally, documentation for data structures, functions, methods, etc. is written directly in the corresponding header file, and also uses Doxygen syntax. + +If you edit the documentation and want to view the changes, you can build the documentation HTML files. To do this, you need to have Doxygen installed on your system. Then, navigate to the Helios root directory and run: + +```bash +doxygen doc/Doxyfile +``` + +To view the built documentation, open the file `doc/html/index.html` in a web browser. + +## Submitting Changes + +To submit a change, please submit a pull request. There are two methods for doing this if you do not have a 'contributor' role in the Helios repo: + +1. Fork the Helios repo, push changes to a branch, and [create a pull-request on github](https://docs.github.com/en/pull-requests/collaborating-with-pull-requests/proposing-changes-to-your-work-with-pull-requests/creating-a-pull-request-from-a-fork). +2. You can use the GitHub web interface to [submit a pull request](https://docs.github.com/en/pull-requests/collaborating-with-pull-requests/proposing-changes-to-your-work-with-pull-requests/creating-a-pull-request). + +Please make edits to the latest version of the master to the extent possible in order to allow for straight-forward merging of the changes into the master. Pull requests should include a clear list of changes summarizing the overall contents of the change. + +Each individual commits should be prefaced with a one-line summary of the intended change. Large and complex commits may also include a longer description, separated by at least one line: + +``` +$ git commit -m "A brief summary of the commit. +> +> A paragraph describing the change in greater detail." +``` + +## Style Guide + +Below are a few general guidelines to follow when contributing to Helios: +1. **Case**: Helios generally uses UpperCamelCase for class names, lowerCamelCase for method names, and snake_case for variable names. +2. **Const Ref**: Use const references (const &) for function/method arguments when passing non-scalar values. + diff --git a/core/include/Context.h b/core/include/Context.h index 2cb1a70b8..91d543004 100755 --- a/core/include/Context.h +++ b/core/include/Context.h @@ -4347,6 +4347,12 @@ class Context{ * \return Size/length of global data array */ size_t getGlobalDataSize( const char* label ) const; + + //! List the labels for all global data in the Context + /** + * \return Vector of labels for all global data + */ + std::vector listGlobalData() const; //! Check if global data 'label' exists /** diff --git a/core/include/helios_vector_types.h b/core/include/helios_vector_types.h index 47d537335..7ec14ca87 100755 --- a/core/include/helios_vector_types.h +++ b/core/include/helios_vector_types.h @@ -352,10 +352,11 @@ struct vec2{ float y; //! Normalize vector components such that the magnitude is unity. - void normalize(){ + vec2 normalize(){ float mag = sqrt( x*x + y*y ); x/=mag; y/=mag; + return {x,y}; } //! Compute the vector magnitude @@ -510,11 +511,12 @@ struct vec3{ float z; //! Normalize vector components such that the magnitude is unity. - void normalize(){ + vec3 normalize(){ float mag = sqrt( x*x + y*y + z*z ); x/=mag; y/=mag; z/=mag; + return {x,y,z}; } //! Compute the vector magnitude @@ -681,12 +683,13 @@ struct vec4{ float w; //! Normalize vector components such that the magnitude is unity. - void normalize(){ + vec4 normalize(){ float mag = sqrt( x*x + y*y + z*z + w*w ); x/=mag; y/=mag; z/=mag; w/=mag; + return {x,y,z,w}; } //! Compute the vector magnitude diff --git a/core/src/Context.cpp b/core/src/Context.cpp index cf6733976..08ec9de50 100755 --- a/core/src/Context.cpp +++ b/core/src/Context.cpp @@ -66,12 +66,7 @@ void Context::addTexture( const char* texture_file ){ } bool Context::doesTextureFileExist(const char* texture_file ) const{ - if (FILE *file = fopen(texture_file, "r")) { - fclose(file); - return true; - } else { - return false; - } + return std::filesystem::exists(texture_file); } bool Context::validateTextureFileExtenstion( const char* texture_file ) const{ @@ -99,7 +94,7 @@ Texture::Texture( const char* texture_file ){ //-------- load transparency channel (if exists) ------------// - if( hastransparencychannel ){ + if( ext==".png" ){ transparencydata = readPNGAlpha( filename ); image_resolution = make_int2(int(transparencydata.front().size()),int(transparencydata.size())); }else{ @@ -3559,9 +3554,12 @@ float Tube::getSegmentVolume( uint segment_index ) const{ void Tube::appendTubeSegment( const helios::vec3 &node_position, float node_radius, const helios::RGBcolor &node_color ){ + //\todo This is a computationally inefficient method for appending the tube, but it ensures that there is no twisting of the tube relative to the previous tube segments. + if( node_radius<0 ){ helios_runtime_error("ERROR (Tube::appendTubeSegment): Node radius must be positive."); } + node_radius = std::max((float)1e-5, node_radius); uint radial_subdivisions = subdiv; @@ -3569,8 +3567,6 @@ void Tube::appendTubeSegment( const helios::vec3 &node_position, float node_radi std::vector cfact(radial_subdivisions + 1); std::vector sfact(radial_subdivisions + 1); - vec3 nvec(0.1817f,0.6198f,0.7634f);//random vector to get things going - for(int j=0; j < radial_subdivisions + 1; j++ ){ cfact[j]=cosf(2.f*float(M_PI)*float(j)/float(radial_subdivisions)); sfact[j]=sinf(2.f*float(M_PI)*float(j)/float(radial_subdivisions)); @@ -3585,24 +3581,53 @@ void Tube::appendTubeSegment( const helios::vec3 &node_position, float node_radi int node_count = nodes.size(); - for( int i=node_count-3; i 0.99f) { + initial_radial = vec3(0.0f, 1.0f, 0.0f); // Avoid parallel vectors + } + previous_radial_dir = cross(axial_vector, initial_radial).normalize(); + } else { + if (i == node_count - 1) { + axial_vector = nodes[i] - nodes[i - 1]; + } else { + axial_vector = 0.5f * ((nodes[i] - nodes[i - 1]) + (nodes[i + 1] - nodes[i])); + } + axial_vector.normalize(); - vec3 orthogonal_dir = cross(radial_dir, axial_vector); - orthogonal_dir.normalize(); + // Calculate radial direction using parallel transport + vec3 rotation_axis = cross(previous_axial_vector, axial_vector); + if (rotation_axis.magnitude() > 1e-6) { + float angle = acos(previous_axial_vector * axial_vector); + previous_radial_dir = rotatePointAboutLine(previous_radial_dir, vec3(0.0f, 0.0f, 0.0f), rotation_axis, angle); + } + previous_radial_dir.normalize(); + } - for(int j=0; j < radial_subdivisions + 1; j++ ){ + previous_axial_vector = axial_vector; - vec3 normal = cfact.at(j)*radius.at(i)*radial_dir + sfact.at(j)*radius.at(i)*orthogonal_dir; - triangle_vertices.at(i).at(j)=nodes.at(i)+normal; + vec3 radial_dir = previous_radial_dir; + vec3 orthogonal_dir = cross(radial_dir, axial_vector); + orthogonal_dir.normalize(); + if( i1 || textureuv_ufrac.y>1 ){ + } else if (textureuv_ufrac.x < 0 || textureuv_ufrac.y < 0 || textureuv_ufrac.x > 1 || textureuv_ufrac.y > 1) { helios_runtime_error("ERROR (Tube::appendTubeSegment): Texture U fraction must be between 0 and 1."); } + node_radius = std::max((float)1e-5, node_radius); uint radial_subdivisions = subdiv; @@ -3649,48 +3677,76 @@ void Tube::appendTubeSegment( const helios::vec3 &node_position, float node_radi std::vector cfact(radial_subdivisions + 1); std::vector sfact(radial_subdivisions + 1); - vec3 nvec(0.1817f,0.6198f,0.7634f);//random vector to get things going - - for(int j=0; j < radial_subdivisions + 1; j++ ){ - cfact[j]=cosf(2.f*float(M_PI)*float(j)/float(radial_subdivisions)); - sfact[j]=sinf(2.f*float(M_PI)*float(j)/float(radial_subdivisions)); + for (int j = 0; j < radial_subdivisions + 1; j++) { + cfact[j] = cosf(2.f * float(M_PI) * float(j) / float(radial_subdivisions)); + sfact[j] = sinf(2.f * float(M_PI) * float(j) / float(radial_subdivisions)); } - triangle_vertices.resize( triangle_vertices.size() + 1 ); - triangle_vertices.back().resize(radial_subdivisions+1); - std::vector > uv; - resize_vector( uv, radial_subdivisions + 1, 2 ); + triangle_vertices.resize(triangle_vertices.size() + 1); + triangle_vertices.back().resize(radial_subdivisions + 1); + std::vector> uv; + resize_vector(uv, radial_subdivisions + 1, 2); - nodes.push_back( node_position ); - radius.push_back( node_radius ); - colors.push_back( RGB::black ); + nodes.push_back(node_position); + radius.push_back(node_radius); + colors.push_back(RGB::black); int node_count = nodes.size(); - for( int i=node_count-3; i 0.99f) { + initial_radial = vec3(0.0f, 1.0f, 0.0f); // Avoid parallel vectors + } + previous_radial_dir = cross(axial_vector, initial_radial).normalize(); + } else { + if (i == node_count - 1) { + axial_vector = nodes[i] - nodes[i - 1]; + } else { + axial_vector = 0.5f * ((nodes[i] - nodes[i - 1]) + (nodes[i + 1] - nodes[i])); + } + axial_vector.normalize(); - vec3 radial_dir = nvec - axial_vector * (nvec * axial_vector); - radial_dir.normalize(); + // Calculate radial direction using parallel transport + vec3 rotation_axis = cross(previous_axial_vector, axial_vector); + if (rotation_axis.magnitude() > 1e-6) { + float angle = acos(previous_axial_vector * axial_vector); + previous_radial_dir = rotatePointAboutLine(previous_radial_dir, vec3(0.0f, 0.0f, 0.0f), rotation_axis, angle); + } + previous_radial_dir.normalize(); + } + previous_axial_vector = axial_vector; + + vec3 radial_dir = previous_radial_dir; vec3 orthogonal_dir = cross(radial_dir, axial_vector); orthogonal_dir.normalize(); - for(int j=0; j < radial_subdivisions + 1; j++ ){ - - vec3 normal = cfact.at(j)*radius.at(i)*radial_dir + sfact.at(j)*radius.at(i)*orthogonal_dir; - triangle_vertices.at(i).at(j)=nodes.at(i)+normal; + if( i ufrac{textureuv_ufrac.x, textureuv_ufrac.y}; - for( int i=0; i<2; i++ ){ - for(int j=0; j < radial_subdivisions + 1; j++ ){ - uv.at(i).at(j).x = ufrac.at(i); - uv.at(i).at(j).y = float(j)/float(radial_subdivisions); + for (int i = 0; i < 2; i++) { + for (int j = 0; j < radial_subdivisions + 1; j++) { + uv[i][j].x = ufrac[i]; + uv[i][j].y = float(j) / float(radial_subdivisions); } } @@ -3699,38 +3755,34 @@ void Tube::appendTubeSegment( const helios::vec3 &node_position, float node_radi vec3 v0, v1, v2; vec2 uv0, uv1, uv2; - //add triangles for new segment - - for(int j=0; j < radial_subdivisions; j++ ) { - - v0 = triangle_vertices.at(1).at(j); - v1 = triangle_vertices.at(1+1).at(j + 1); - v2 = triangle_vertices.at(1).at(j + 1); + // Add triangles for new segment + for (int j = 0; j < radial_subdivisions; j++) { + v0 = triangle_vertices[node_count - 2][j]; + v1 = triangle_vertices[node_count - 1][j + 1]; + v2 = triangle_vertices[node_count - 2][j + 1]; - uv0 = uv.at(0).at(j); - uv1 = uv.at(0+1).at(j+1); - uv2 = uv.at(0).at(j+1); + uv0 = uv[0][j]; + uv1 = uv[1][j + 1]; + uv2 = uv[0][j + 1]; UUIDs.push_back(context->addTriangle(v0, v1, v2, texturefile, uv0, uv1, uv2)); - v0 = triangle_vertices.at(1).at(j); - v1 = triangle_vertices.at(1+1).at(j); - v2 = triangle_vertices.at(1+1).at(j + 1); + v0 = triangle_vertices[node_count - 2][j]; + v1 = triangle_vertices[node_count - 1][j]; + v2 = triangle_vertices[node_count - 1][j + 1]; - uv0 = uv.at(0).at(j); - uv1 = uv.at(0+1).at(j); - uv2 = uv.at(0+1).at(j+1); + uv0 = uv[0][j]; + uv1 = uv[1][j]; + uv2 = uv[1][j + 1]; UUIDs.push_back(context->addTriangle(v0, v1, v2, texturefile, uv0, uv1, uv2)); - } - for( uint p : UUIDs){ + for (uint p : UUIDs) { context->setPrimitiveParentObjectID(p, this->OID); } updateTriangleVertices(); - } void Tube::scaleTubeGirth( float S ){ @@ -4370,12 +4422,12 @@ uint Context::addSphereObject(uint Ndivs, const vec3 ¢er, const vec3 &radius //top cap for( int j=0; j &n helios_runtime_error("ERROR (Context::addTubeObject): Size of `nodes' and `color' arguments must agree."); } - vec3 axial_vector, convec; + vec3 axial_vector; std::vector cfact(radial_subdivisions + 1); std::vector sfact(radial_subdivisions + 1); - std::vector > triangle_vertices; - resize_vector( triangle_vertices, radial_subdivisions + 1, node_count ); + std::vector> triangle_vertices; + resize_vector(triangle_vertices, radial_subdivisions + 1, node_count); - for(int j=0; j < radial_subdivisions + 1; j++ ){ - cfact[j]=cosf(2.f*float(M_PI)*float(j)/float(radial_subdivisions)); - sfact[j]=sinf(2.f*float(M_PI)*float(j)/float(radial_subdivisions)); + // Initialize trigonometric factors for circle points + for (int j = 0; j < radial_subdivisions + 1; j++) { + cfact[j] = cosf(2.f * float(M_PI) * float(j) / float(radial_subdivisions)); + sfact[j] = sinf(2.f * float(M_PI) * float(j) / float(radial_subdivisions)); } - for( int i=0; i 0.99f) { + initial_radial = vec3(0.0f, 1.0f, 0.0f); // Avoid parallel vectors + } + previous_radial_dir = cross(axial_vector, initial_radial).normalize(); + } else { + if (i == node_count - 1) { + axial_vector = nodes[i] - nodes[i - 1]; + } else { + axial_vector = 0.5f * ((nodes[i] - nodes[i - 1]) + (nodes[i + 1] - nodes[i])); + } + axial_vector.normalize(); - convec = cross(nvec, axial_vector); - convec.normalize(); - nvec = cross(axial_vector, convec); - nvec.normalize(); + // Calculate radial direction using parallel transport + vec3 rotation_axis = cross(previous_axial_vector, axial_vector); + if (rotation_axis.magnitude() > 1e-6) { + float angle = acos(previous_axial_vector * axial_vector); + previous_radial_dir = rotatePointAboutLine(previous_radial_dir, vec3(0.0f, 0.0f, 0.0f), rotation_axis, angle); + } + previous_radial_dir.normalize(); + } - for(int j=0; j < radial_subdivisions + 1; j++ ){ + previous_axial_vector = axial_vector; - vec3 normal = cfact[j]*radius[i]*nvec+sfact[j]*radius[i]*convec; - triangle_vertices[i][j]=nodes[i]+normal; + vec3 radial_dir = previous_radial_dir; + vec3 orthogonal_dir = cross(radial_dir, axial_vector); + orthogonal_dir.normalize(); + for (int j = 0; j < radial_subdivisions + 1; j++) { + vec3 normal = cfact[j] * radius[i] * radial_dir + sfact[j] * radius[i] * orthogonal_dir; + triangle_vertices[i][j] = nodes[i] + normal; } - } @@ -4755,93 +4817,99 @@ uint Context::addTubeObject(uint radial_subdivisions, const std::vector &n return addTubeObject( radial_subdivisions, nodes, radius, texturefile, textureuv_ufrac ); } -uint Context::addTubeObject(uint radial_subdivisions, const std::vector &nodes, const std::vector &radius, const char* texturefile, const std::vector &textureuv_ufrac ){ - - - if( !validateTextureFileExtenstion(texturefile) ){ +uint Context::addTubeObject(uint radial_subdivisions, const std::vector &nodes, const std::vector &radius, const char* texturefile, const std::vector &textureuv_ufrac) { + if (!validateTextureFileExtenstion(texturefile)) { helios_runtime_error("ERROR (Context::addTubeObject): Texture file " + std::string(texturefile) + " is not PNG or JPEG format."); - }else if( !doesTextureFileExist(texturefile) ){ + } else if (!doesTextureFileExist(texturefile)) { helios_runtime_error("ERROR (Context::addTubeObject): Texture file " + std::string(texturefile) + " does not exist."); } const uint node_count = nodes.size(); - if( node_count==0 ){ + if (node_count == 0) { helios_runtime_error("ERROR (Context::addTubeObject): Node and radius arrays are empty."); - }else if( node_count!=radius.size() ){ + } else if (node_count != radius.size()) { helios_runtime_error("ERROR (Context::addTubeObject): Size of `nodes' and `radius' arguments must agree."); - }else if( node_count!=textureuv_ufrac.size() ){ + } else if (node_count != textureuv_ufrac.size()) { helios_runtime_error("ERROR (Context::addTubeObject): Size of `nodes' and `textureuv_ufrac' arguments must agree."); } - vec3 axial_vector, convec; + vec3 axial_vector; std::vector cfact(radial_subdivisions + 1); std::vector sfact(radial_subdivisions + 1); - std::vector > triangle_vertices; - resize_vector( triangle_vertices, radial_subdivisions + 1, node_count ); - std::vector > uv; - resize_vector( uv, radial_subdivisions + 1, node_count ); + std::vector> triangle_vertices; + resize_vector(triangle_vertices, radial_subdivisions + 1, node_count); + std::vector> uv; + resize_vector(uv, radial_subdivisions + 1, node_count); - for(int j=0; j < radial_subdivisions + 1; j++ ){ - cfact[j]=cosf(2.f*float(M_PI)*float(j)/float(radial_subdivisions)); - sfact[j]=sinf(2.f*float(M_PI)*float(j)/float(radial_subdivisions)); + // Initialize trigonometric factors for circle points + for (int j = 0; j < radial_subdivisions + 1; j++) { + cfact[j] = cosf(2.f * float(M_PI) * float(j) / float(radial_subdivisions)); + sfact[j] = sinf(2.f * float(M_PI) * float(j) / float(radial_subdivisions)); } - for( int i=0; i 0.99f) { + initial_radial = vec3(0.0f, 1.0f, 0.0f); // Avoid parallel vectors + } + previous_radial_dir = cross(axial_vector, initial_radial).normalize(); + } else { + if (i == node_count - 1) { + axial_vector = nodes[i] - nodes[i - 1]; + } else { + axial_vector = 0.5f * ((nodes[i] - nodes[i - 1]) + (nodes[i + 1] - nodes[i])); + } + axial_vector.normalize(); + + // Calculate radial direction using parallel transport + vec3 rotation_axis = cross(previous_axial_vector, axial_vector); + if (rotation_axis.magnitude() > 1e-6) { + float angle = acos(previous_axial_vector * axial_vector); + previous_radial_dir = rotatePointAboutLine(previous_radial_dir, vec3(0.0f, 0.0f, 0.0f), rotation_axis, angle); + } + previous_radial_dir.normalize(); } - float norm; - convec = cross(nvec, axial_vector); - convec.normalize(); - nvec = cross(axial_vector, convec); - nvec.normalize(); + previous_axial_vector = axial_vector; - for(int j=0; j < radial_subdivisions + 1; j++ ){ + vec3 radial_dir = previous_radial_dir; + vec3 orthogonal_dir = cross(radial_dir, axial_vector); + orthogonal_dir.normalize(); - vec3 normal = cfact[j]*radius[i]*nvec+sfact[j]*radius[i]*convec; - triangle_vertices[i][j]=nodes[i]+normal; + for (int j = 0; j < radial_subdivisions + 1; j++) { + vec3 normal = cfact[j] * radius[i] * radial_dir + sfact[j] * radius[i] * orthogonal_dir; + triangle_vertices[i][j] = nodes[i] + normal; uv[i][j].x = textureuv_ufrac[i]; - uv[i][j].y = float(j)/float(radial_subdivisions); - + uv[i][j].y = float(j) / float(radial_subdivisions); } - } - std::vector UUIDs(2 * (node_count-1) * radial_subdivisions ); + std::vector UUIDs(2 * (node_count - 1) * radial_subdivisions); vec3 v0, v1, v2; vec2 uv0, uv1, uv2; - int ii=0; - for(int j=0; j < radial_subdivisions; j++ ) { + int ii = 0; + for (int j = 0; j < radial_subdivisions; j++) { for (int i = 0; i < node_count - 1; i++) { - v0 = triangle_vertices[i][j]; v1 = triangle_vertices[i + 1][j + 1]; v2 = triangle_vertices[i][j + 1]; uv0 = uv[i][j]; - uv1 = uv[i+1][j+1]; - uv2 = uv[i][j+1]; + uv1 = uv[i + 1][j + 1]; + uv2 = uv[i][j + 1]; UUIDs.at(ii) = addTriangle(v0, v1, v2, texturefile, uv0, uv1, uv2); @@ -4850,8 +4918,8 @@ uint Context::addTubeObject(uint radial_subdivisions, const std::vector &n v2 = triangle_vertices[i + 1][j + 1]; uv0 = uv[i][j]; - uv1 = uv[i+1][j]; - uv2 = uv[i+1][j+1]; + uv1 = uv[i + 1][j]; + uv2 = uv[i + 1][j + 1]; UUIDs.at(ii + 1) = addTriangle(v0, v1, v2, texturefile, uv0, uv1, uv2); @@ -4863,15 +4931,14 @@ uint Context::addTubeObject(uint radial_subdivisions, const std::vector &n auto* tube_new = (new Tube(currentObjectID, UUIDs, nodes, radius, colors, triangle_vertices, radial_subdivisions, texturefile, this)); - for( uint p : UUIDs){ + for (uint p : UUIDs) { getPrimitivePointer_private(p)->setParentObjectID(currentObjectID); } objects[currentObjectID] = tube_new; currentObjectID++; - return currentObjectID-1; - + return currentObjectID - 1; } uint Context::addBoxObject(const vec3 ¢er, const vec3 &size, const int3 &subdiv ){ diff --git a/core/src/Context_data.cpp b/core/src/Context_data.cpp index 2b2ee71a8..923e2808e 100644 --- a/core/src/Context_data.cpp +++ b/core/src/Context_data.cpp @@ -4444,6 +4444,17 @@ size_t Context::getGlobalDataSize(const char *label) const { } +std::vector Context::listGlobalData() const{ + + std::vector labels; + labels.reserve(globaldata.size()); + for( auto it=globaldata.begin(); it!=globaldata.end(); it++ ){ + labels.push_back(it->first); + } + + return labels; +} + bool Context::doesGlobalDataExist( const char* label ) const{ if( globaldata.find(label) == globaldata.end() ){ diff --git a/core/src/global.cpp b/core/src/global.cpp index 8a35599d5..383407e3d 100755 --- a/core/src/global.cpp +++ b/core/src/global.cpp @@ -1675,7 +1675,7 @@ void helios::readJPEG( const std::string &filename, uint &width, uint &height, s auto file_extension = getFileExtension(filename); if ( file_extension != ".jpg" && file_extension != ".JPG" && file_extension != ".jpeg" && file_extension != ".JPEG" ) { - throw (std::runtime_error("ERROR (Context::readJPEG): File " + filename + " is not JPEG format.")); + helios_runtime_error("ERROR (Context::readJPEG): File " + filename + " is not JPEG format."); } struct jpeg_decompress_struct cinfo; @@ -1686,7 +1686,7 @@ void helios::readJPEG( const std::string &filename, uint &width, uint &height, s int row_stride; if ((infile = fopen(filename.c_str(), "rb")) == nullptr ) { - throw (std::runtime_error("ERROR (Context::readJPEG): File " + filename + " could not be opened. Check that the file exists and that you have permission to read it.")); + helios_runtime_error("ERROR (Context::readJPEG): File " + filename + " could not be opened. Check that the file exists and that you have permission to read it."); } cinfo.err = jpeg_std_error(&jerr.pub); @@ -1712,7 +1712,9 @@ void helios::readJPEG( const std::string &filename, uint &width, uint &height, s height=cinfo.output_height; if(cinfo.output_components!=3){ - throw (std::runtime_error("ERROR (Context::readJPEG): Image file does not have RGB components.")); + helios_runtime_error("ERROR (Context::readJPEG): Image file does not have RGB components."); + }else if( width==0 || height == 0 ){ + helios_runtime_error("ERROR (Context::readJPEG): Image file is empty."); } pixel_data.resize(width*height); @@ -1743,7 +1745,7 @@ helios::int2 helios::getImageResolutionJPEG( const std::string &filename ){ auto file_extension = getFileExtension(filename); if ( file_extension != ".jpg" && file_extension != ".JPG" && file_extension != ".jpeg" && file_extension != ".JPEG" ) { - throw (std::runtime_error("ERROR (Context::getImageResolutionJPEG): File " + filename + " is not JPEG format.")); + helios_runtime_error("ERROR (Context::getImageResolutionJPEG): File " + filename + " is not JPEG format."); } struct jpeg_decompress_struct cinfo; @@ -1754,7 +1756,7 @@ helios::int2 helios::getImageResolutionJPEG( const std::string &filename ){ int row_stride; if ((infile = fopen(filename.c_str(), "rb")) == nullptr ) { - throw (std::runtime_error("ERROR (Context::getImageResolutionJPEG): File " + filename + " could not be opened. Check that the file exists and that you have permission to read it.")); + helios_runtime_error("ERROR (Context::getImageResolutionJPEG): File " + filename + " could not be opened. Check that the file exists and that you have permission to read it."); } cinfo.err = jpeg_std_error(&jerr.pub); diff --git a/doc/CHANGELOG b/doc/CHANGELOG index d04b722ef..b22af9cf6 100644 --- a/doc/CHANGELOG +++ b/doc/CHANGELOG @@ -1847,4 +1847,47 @@ The radiation model has been re-designed, with the following primary additions: *Stomatal Conductance* *Credit to Kyle Rizzo for these updates -- Added a stomatal conductance model (BMF) parameter library for a range of species. \ No newline at end of file +- Added a stomatal conductance model (BMF) parameter library for a range of species. + +[1.3.20] 2024-10-21 + +*Context* +- Texture mapping for sphere objects was not correct. The top cap was not being properly mapped, resulting in a dark spot. +- Added Context::listGlobalData() to list out all global data in the Context. +- There were still issues with tube twisting when using Context::appendTubeSegment() based on the implementation from v1.3.19. This should now be fixed. +- Modified helios vector types vec2, vec3, and vec4 normalize methods to also return the normalized vector. This allows for chaining of operations. + +*Energy Balance* +- Added overloaded version of EnergyBalanceModel::addRadiationBand() to add multiple bands at the same time by passing a vector. + +*Stomatal Conductance* +- Error in StomatalConductanceModel::setBMFCoefficientsFromLibrary(const std::string &species_name) function fixed. + +*Plant Architecture* +- Added capability of having evergreen plants. This is controlled through PlantArchitecture::setPlantPhenologicalThresholds(); +- Added olive, pistachio, and apple trees and grapevine (VSP) to the library. +- 'flower_arrangement_pattern' parameter of the internode has been removed. It currently now follows the phyllotaxy of the parent shoot. +- An error was corrected in which the first peduncle segment was being set to the internode color. +- An error was corrected that would cause inconsistent behavior of the shoot internode when there were multiple child shoots originating from the same node. +- Changed how girth scaling is handled. The shoot girth is now calculated based on the downstream leaf area. The new parameter is called "girth_area_factor", which is cm^2 branch area / m^2 downstream leaf area. +- The parameter 'flowers_per_rachis' was changed to be 'flowers_per_peduncle'. + +*Radiation Model* +- When writing output images, the radiation model now checks to make sure the output directory exists and creates it if it does not. + +*Synthetic Annotation* +- Error (Windows OS) fixed to use the filesystem library for file management instead of mkdir. Credit to Sean Banks for this edit. + +*Weber-Penn Tree* +* Credit to Corentin LEROY for these edits +- Addition of variable range parameters for WeberPenn tree generation +- Addition of a sample project to demonstrate how one could build tree orchards based on a WeberPenn XML configuration + +*Canopy Generator* +* Credit to Corentin LEROY for these edits +- Handling of parameters that were not parsed from a CanopyGenerator XML configuration for grapevine canopies +- A refactoring of the way canopy types are handled. Now all canopy classes inherit from BaseCanopyParameters, and all grapevine canopy classes inherit from BaseGrapeVineParameters. On top of that, parameters read from an XML file are stored so that canopies or individual plants can be built later on. This allows client code to have no knowledge at all about the types of canopies or plants that can be built; this information is exclusively written in the configuration file. +- Addition of variable range parameters for grapevine canopies +- Addition of parameters to create dead plants or to have missing plants (holes) in grapevine canopies +- Addition of parameters to set the cordon length independently from the plant spacing for grapevine canopies. Until now, the plant spacing was used so that there was no discontinuity between neighbor vine stocks. These new parameters allow to potentially have gaps between vine stocks, or even have them overlap with each other (if the cordon length is greater than the plant spacing). +- Addition of a sample project to demonstrate how one could build realistic vineyards based on CanopyGenerator XML configuration. \ No newline at end of file diff --git a/doc/UserGuide.dox b/doc/UserGuide.dox index 7fcc3b7b7..326d035f7 100755 --- a/doc/UserGuide.dox +++ b/doc/UserGuide.dox @@ -1,4 +1,4 @@ -/*! \mainpage Helios Documentation v1.3.19 +/*! \mainpage Helios Documentation v1.3.20


diff --git a/doc/header.html b/doc/header.html index 08d2d1b36..0a9323908 100644 --- a/doc/header.html +++ b/doc/header.html @@ -40,7 +40,7 @@ Logo -
 v1.3.19 +
 v1.3.20
diff --git a/doc/html/Helios_logo_small.png b/doc/html/Helios_logo_small.png index 15d057d70..65732fadf 100644 Binary files a/doc/html/Helios_logo_small.png and b/doc/html/Helios_logo_small.png differ diff --git a/doc/html/PlantArchitecture_cover_image.png b/doc/html/PlantArchitecture_cover_image.png new file mode 100644 index 000000000..37e806a36 Binary files /dev/null and b/doc/html/PlantArchitecture_cover_image.png differ diff --git a/doc/html/_a_p_i.html b/doc/html/_a_p_i.html index de52fcee0..84312fcd5 100644 --- a/doc/html/_a_p_i.html +++ b/doc/html/_a_p_i.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
@@ -369,9 +369,9 @@

TypeDescriptionData FieldsMember FunctionsMath OperatorsCreation Function -vec22D vector of floatsx, ynormalize(), magnitude()* (dot product), * (mult. by scalar), /, +, -, +=, ==, !=, << make_vec2() +vec22D vector of floatsx, ynormalize(), magnitude()* (dot product), * (mult. by scalar), /, +, -, +=, ==, !=, << make_vec2() -vec33D vector of floatsx, y, znormalize(), magnitude()* (dot product), * (mult. by scalar), /, +, -, +=, ==, !=, << make_vec3() +vec33D vector of floatsx, y, znormalize(), magnitude()* (dot product), * (mult. by scalar), /, +, -, +=, ==, !=, << make_vec3() vec44D vector of floatsx, y, z, wnone* (dot product), * (mult. by scalar), /, +, -, +=, ==, !=, << make_vec4() @@ -441,7 +441,7 @@

Note that the above colors can be directly passed to make_RGBAcolor to specify an alpha (transparency) value:

RGBAcolor red_trans = make_RGBAcolor( RGB::red, 0.5 );
-
helios::RGBAcolor
R-G-B-A color vector.
Definition helios_vector_types.h:1021
+
helios::RGBAcolor
R-G-B-A color vector.
Definition helios_vector_types.h:1024

Coordinate System

Helios uses a right-handed Cartesian coordinate system. (x,y,z) coordinates are typically specified using the 'vec3' data structure (see Vector Types).
@@ -531,9 +531,9 @@

UUID = context.addPatch( center, size );
}
-
helios::Context::addPatch
uint addPatch()
Add new default Patch geometric primitive, which is centered at the origin (0,0,0),...
Definition Context.cpp:1207
+
helios::Context::addPatch
uint addPatch()
Add new default Patch geometric primitive, which is centered at the origin (0,0,0),...
Definition Context.cpp:1202
helios::vec2
Vector of two elements of type 'float'.
Definition helios_vector_types.h:346
-
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:502
+
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:503

This will add the Patch shown below, with the default orientation of horizontal. (Note that the addition of the checkerboard ground and the 'Visualizer' plugin is needed to replicate this image, which is not shown in the example code.)

@@ -544,7 +544,7 @@

vec2 size = make_vec2(1,1);
SphericalCoord rotation = make_SphericalCoord(0.25*M_PI,0.5*M_PI);
context.addPatch( center, size, rotation );
-
helios::SphericalCoord
Vector of spherical coordinates (elevation,azimuth)
Definition helios_vector_types.h:1468
+
helios::SphericalCoord
Vector of spherical coordinates (elevation,azimuth)
Definition helios_vector_types.h:1471

This will first rotate the patch by 0.25 $\pi$ rad about the x-axis such that its normal is pointing toward the +y direction, THEN it will apply a clockwise azimuthal rotation of 0.5 $\pi$ rad such that its normal is pointing in the +x direction (which will be its final orientation). Note that in order to have more control over rotations, it is recommended to use the Primitive::rotate() function (see "Primitive Transformations" section below).

Adding Triangles

@@ -564,7 +564,7 @@

UUID = context.addTriangle( v0, v1, v2, RGB::red );
}
-
helios::Context::addTriangle
uint addTriangle(const helios::vec3 &vertex0, const helios::vec3 &vertex1, const helios::vec3 &vertex2)
Add new Triangle geometric primitive.
Definition Context.cpp:1323
+
helios::Context::addTriangle
uint addTriangle(const helios::vec3 &vertex0, const helios::vec3 &vertex1, const helios::vec3 &vertex2)
Add new Triangle geometric primitive.
Definition Context.cpp:1318

This will add the Triangle shown below. (Note that the addition of the checkerboard ground and the 'Visualizer' plugin is needed to replicate this image, which is not shown in the example code.)

@@ -592,7 +592,7 @@

UUID = context.addVoxel( center, size, 0, RGB::red );
}
-
helios::Context::addVoxel
uint addVoxel(const helios::vec3 &center, const helios::vec3 &size)
Add new Voxel geometric primitive.
Definition Context.cpp:1367
+
helios::Context::addVoxel
uint addVoxel(const helios::vec3 &center, const helios::vec3 &size)
Add new Voxel geometric primitive.
Definition Context.cpp:1362

This will add the Voxel shown below, with the default orientation of horizontal. (Note that the addition of the checkerboard ground and the 'visualizer' plugin is needed to replicate this image, which is not shown in the example code.)

@@ -665,7 +665,7 @@

context.translatePrimitive( UUID, translation );
}
-
helios::Context::translatePrimitive
void translatePrimitive(uint UUID, const vec3 &shift)
Translate a primitive using its UUID.
Definition Context.cpp:1401
+
helios::Context::translatePrimitive
void translatePrimitive(uint UUID, const vec3 &shift)
Translate a primitive using its UUID.
Definition Context.cpp:1396

Primitive Properties

All primitives have a common set of data that can be accessed by the same set of functions, such as the primitive surface area, the primitive vertices, etc.

@@ -820,8 +820,8 @@

context.deletePrimitive(UUID);
}
-
helios::Context::deletePrimitive
void deletePrimitive(uint UUID)
Delete a single primitive from the context.
Definition Context.cpp:1531
-
helios::Context::copyPrimitive
uint copyPrimitive(uint UUID)
Make a copy of a primitive from the context.
Definition Context.cpp:1573
+
helios::Context::deletePrimitive
void deletePrimitive(uint UUID)
Delete a single primitive from the context.
Definition Context.cpp:1526
+
helios::Context::copyPrimitive
uint copyPrimitive(uint UUID)
Make a copy of a primitive from the context.
Definition Context.cpp:1568
@@ -1011,9 +1011,9 @@

float area = object->getArea();
-
helios::CompoundObject::getArea
float getArea() const
Calculate the total one-sided surface area of the Compound Object.
Definition Context.cpp:2270
-
helios::Context::getObjectPointer
CompoundObject * getObjectPointer(uint ObjID) const
Get a pointer to a Compound Object.
Definition Context.cpp:2559
-
helios::Context::addTileObject
uint addTileObject(const vec3 &center, const vec2 &size, const SphericalCoord &rotation, const int2 &subdiv)
Add a patch that is subdivided into a regular grid of sub-patches (tiled)
Definition Context.cpp:4460
+
helios::CompoundObject::getArea
float getArea() const
Calculate the total one-sided surface area of the Compound Object.
Definition Context.cpp:2265
+
helios::Context::getObjectPointer
CompoundObject * getObjectPointer(uint ObjID) const
Get a pointer to a Compound Object.
Definition Context.cpp:2554
+
helios::Context::addTileObject
uint addTileObject(const vec3 &center, const vec2 &size, const SphericalCoord &rotation, const int2 &subdiv)
Add a patch that is subdivided into a regular grid of sub-patches (tiled)
Definition Context.cpp:4512

or a shorthand would be

uint objID; //object identifier
float area = context.getObjectPointer(objID)->getArea();
@@ -1341,14 +1341,14 @@

}
}
-
helios::Context::getTimeseriesLength
uint getTimeseriesLength(const char *label) const
Get the length of timeseries data.
Definition Context.cpp:2009
-
helios::Context::queryTimeseriesData
float queryTimeseriesData(const char *label, const Date &date, const Time &time) const
Get a timeseries data point by specifying a date and time vector.
Definition Context.cpp:1889
-
helios::Context::addTimeseriesData
void addTimeseriesData(const char *label, float value, const Date &date, const Time &time)
Add a data point to timeseries of data.
Definition Context.cpp:1818
- - -
helios::Time::second
int second
Second of minute.
Definition helios_vector_types.h:1352
-
helios::Time::hour
int hour
Hour of day.
Definition helios_vector_types.h:1356
-
helios::Time::minute
int minute
Minute of hour.
Definition helios_vector_types.h:1354
+
helios::Context::getTimeseriesLength
uint getTimeseriesLength(const char *label) const
Get the length of timeseries data.
Definition Context.cpp:2004
+
helios::Context::queryTimeseriesData
float queryTimeseriesData(const char *label, const Date &date, const Time &time) const
Get a timeseries data point by specifying a date and time vector.
Definition Context.cpp:1884
+
helios::Context::addTimeseriesData
void addTimeseriesData(const char *label, float value, const Date &date, const Time &time)
Add a data point to timeseries of data.
Definition Context.cpp:1813
+ + +
helios::Time::second
int second
Second of minute.
Definition helios_vector_types.h:1355
+
helios::Time::hour
int hour
Hour of day.
Definition helios_vector_types.h:1359
+
helios::Time::minute
int minute
Minute of hour.
Definition helios_vector_types.h:1357

Typically, data is not entered manually, but rather through an XML or text file (see Reading XML Files for information).

It is often necessary to get the number of data points in a given timeseries, which can be accomplished with the command:

uint N = context.getTimeseriesLength( "temperature" );
diff --git a/doc/html/_aerial_li_d_a_r_8cpp.html b/doc/html/_aerial_li_d_a_r_8cpp.html index fcf885826..dac6ecbad 100644 --- a/doc/html/_aerial_li_d_a_r_8cpp.html +++ b/doc/html/_aerial_li_d_a_r_8cpp.html @@ -38,7 +38,7 @@

diff --git a/doc/html/_aerial_li_d_a_r_8cpp_source.html b/doc/html/_aerial_li_d_a_r_8cpp_source.html index 36862663f..63e5c8f22 100644 --- a/doc/html/_aerial_li_d_a_r_8cpp_source.html +++ b/doc/html/_aerial_li_d_a_r_8cpp_source.html @@ -38,7 +38,7 @@ @@ -1925,20 +1925,20 @@
Visualizer::addVoxelByCenter
void addVoxelByCenter(const helios::vec3 &center, const helios::vec3 &size, const helios::SphericalCoord &rotation, const helios::RGBcolor &color, CoordinateSystem coordFlag)
Add a voxel by giving the coordinates of its center.
Definition Visualizer.cpp:1845
Visualizer::getCurrentColormap
Colormap getCurrentColormap() const
Get the current colormap used in Colorbar/visualization.
Definition Visualizer.cpp:2687
helios::Context
Stores the state associated with simulation.
Definition Context.h:1882
-
helios::Context::randu
float randu()
Draw a random number from a uniform distribution between 0 and 1.
Definition Context.cpp:1173
+
helios::Context::randu
float randu()
Draw a random number from a uniform distribution between 0 and 1.
Definition Context.cpp:1168
helios::helios_runtime_error
void helios_runtime_error(const std::string &error_message)
Function to throw a runtime error.
Definition global.cpp:29
helios::randu
float randu()
Random number from a uniform distribution between 0 and 1.
Definition global.cpp:223
helios::cart2sphere
SphericalCoord cart2sphere(const vec3 &Cartesian)
Convert Cartesian coordinates to spherical coordinates.
Definition global.cpp:610
helios::mean
float mean(const std::vector< float > &vect)
Mean value of a vector of floats.
Definition global.cpp:1002
-
helios::Context::addPatch
uint addPatch()
Add new default Patch geometric primitive, which is centered at the origin (0,0,0),...
Definition Context.cpp:1207
+
helios::Context::addPatch
uint addPatch()
Add new default Patch geometric primitive, which is centered at the origin (0,0,0),...
Definition Context.cpp:1202
helios::make_int2
int2 make_int2(int x, int y)
Make an int2 vector from two ints.
Definition helios_vector_types.h:99
-
helios::make_vec2
vec2 make_vec2(float x, float y)
Make a vec2 from two floats.
Definition helios_vector_types.h:432
-
helios::make_RGBAcolor
RGBAcolor make_RGBAcolor(float r, float g, float b, float a)
Make an RGBAcolor vector.
Definition helios_vector_types.h:1130
-
helios::make_RGBcolor
RGBcolor make_RGBcolor(float r, float g, float b)
Make an RGBcolor vector.
Definition helios_vector_types.h:951
+
helios::make_vec2
vec2 make_vec2(float x, float y)
Make a vec2 from two floats.
Definition helios_vector_types.h:433
+
helios::make_RGBAcolor
RGBAcolor make_RGBAcolor(float r, float g, float b, float a)
Make an RGBAcolor vector.
Definition helios_vector_types.h:1133
+
helios::make_RGBcolor
RGBcolor make_RGBcolor(float r, float g, float b)
Make an RGBcolor vector.
Definition helios_vector_types.h:954
helios::make_int3
int3 make_int3(int X, int Y, int Z)
Make an int3 vector from three ints.
Definition helios_vector_types.h:198
-
helios::make_vec3
vec3 make_vec3(float x, float y, float z)
Make a vec3 from three floats.
Definition helios_vector_types.h:587
-
helios::cross
vec3 cross(const vec3 &a, const vec3 &b)
Cross product of two vec3 vectors.
Definition helios_vector_types.h:597
-
helios::make_SphericalCoord
SphericalCoord make_SphericalCoord(float elevation_radians, float azimuth_radians)
Make a SphericalCoord by specifying elevation and azimuth.
Definition helios_vector_types.h:1536
+
helios::make_vec3
vec3 make_vec3(float x, float y, float z)
Make a vec3 from three floats.
Definition helios_vector_types.h:589
+
helios::cross
vec3 cross(const vec3 &a, const vec3 &b)
Cross product of two vec3 vectors.
Definition helios_vector_types.h:599
+
helios::make_SphericalCoord
SphericalCoord make_SphericalCoord(float elevation_radians, float azimuth_radians)
Make a SphericalCoord by specifying elevation and azimuth.
Definition helios_vector_types.h:1539
AerialHitPoint
Structure containing metadata for an aerial hit point.
Definition AerialLiDAR.h:64
AerialScanMetadata
Structure containing metadata for an aerial scan.
Definition AerialLiDAR.h:26
AerialScanMetadata::extent
helios::vec2 extent
(x,y) size/extent of scan surface
Definition AerialLiDAR.h:43
@@ -1949,9 +1949,9 @@
AerialScanMetadata::exitDiameter
float exitDiameter
Diameter of laser pulse at exit from the scanner.
Definition AerialLiDAR.h:53
AerialScanMetadata::scandensity
float scandensity
Scan density in points/m^2.
Definition AerialLiDAR.h:49
Colormap
RGB color map.
Definition Visualizer.h:159
-
helios::RGBAcolor
R-G-B-A color vector.
Definition helios_vector_types.h:1021
-
helios::RGBcolor
R-G-B color vector.
Definition helios_vector_types.h:841
-
helios::SphericalCoord
Vector of spherical coordinates (elevation,azimuth)
Definition helios_vector_types.h:1468
+
helios::RGBAcolor
R-G-B-A color vector.
Definition helios_vector_types.h:1024
+
helios::RGBcolor
R-G-B color vector.
Definition helios_vector_types.h:844
+
helios::SphericalCoord
Vector of spherical coordinates (elevation,azimuth)
Definition helios_vector_types.h:1471
helios::int2
Vector of two elements of type 'int'.
Definition helios_vector_types.h:44
helios::int2::y
int y
Second element in vector.
Definition helios_vector_types.h:50
helios::int2::x
int x
First element in vector.
Definition helios_vector_types.h:48
@@ -1962,15 +1962,15 @@
helios::vec2
Vector of two elements of type 'float'.
Definition helios_vector_types.h:346
helios::vec2::x
float x
First element in vector.
Definition helios_vector_types.h:350
helios::vec2::y
float y
Second element in vector.
Definition helios_vector_types.h:352
-
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:502
-
helios::vec3::x
float x
First element in vector.
Definition helios_vector_types.h:506
-
helios::vec3::z
float z
Third element in vector.
Definition helios_vector_types.h:510
-
helios::vec3::y
float y
Second element in vector.
Definition helios_vector_types.h:508
-
helios::vec4
Vector of four elements of type 'float'.
Definition helios_vector_types.h:671
-
helios::vec4::y
float y
Second element in vector.
Definition helios_vector_types.h:677
-
helios::vec4::w
float w
Fourth element in vector.
Definition helios_vector_types.h:681
-
helios::vec4::z
float z
Third element in vector.
Definition helios_vector_types.h:679
-
helios::vec4::x
float x
First element in vector.
Definition helios_vector_types.h:675
+
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:503
+
helios::vec3::x
float x
First element in vector.
Definition helios_vector_types.h:507
+
helios::vec3::z
float z
Third element in vector.
Definition helios_vector_types.h:511
+
helios::vec3::y
float y
Second element in vector.
Definition helios_vector_types.h:509
+
helios::vec4
Vector of four elements of type 'float'.
Definition helios_vector_types.h:673
+
helios::vec4::y
float y
Second element in vector.
Definition helios_vector_types.h:679
+
helios::vec4::w
float w
Fourth element in vector.
Definition helios_vector_types.h:683
+
helios::vec4::z
float z
Third element in vector.
Definition helios_vector_types.h:681
+
helios::vec4::x
float x
First element in vector.
Definition helios_vector_types.h:677
diff --git a/doc/html/_aerial_li_d_a_r_8cu.html b/doc/html/_aerial_li_d_a_r_8cu.html index 6efb9c85c..87d1472e8 100644 --- a/doc/html/_aerial_li_d_a_r_8cu.html +++ b/doc/html/_aerial_li_d_a_r_8cu.html @@ -38,7 +38,7 @@
diff --git a/doc/html/_aerial_li_d_a_r_8cu_source.html b/doc/html/_aerial_li_d_a_r_8cu_source.html index 3ddf71252..0bbf912c1 100644 --- a/doc/html/_aerial_li_d_a_r_8cu_source.html +++ b/doc/html/_aerial_li_d_a_r_8cu_source.html @@ -38,7 +38,7 @@ @@ -1778,22 +1778,22 @@
AerialLiDARcloud::getGridResolution
helios::int3 getGridResolution(void) const
Get the total number of cells in the grid.
Definition AerialLiDAR.cpp:764
AerialLiDARcloud::enableMessages
void enableMessages(void)
Enable all print messages to the screen.
Definition AerialLiDAR.cpp:284
helios::Context
Stores the state associated with simulation.
Definition Context.h:1882
-
helios::Context::randu
float randu()
Draw a random number from a uniform distribution between 0 and 1.
Definition Context.cpp:1173
-
helios::Context::getPrimitiveTextureFile
std::string getPrimitiveTextureFile(uint UUID) const
Get the path to texture map file for primitive. If primitive does not have a texture map,...
Definition Context.cpp:7036
-
helios::Context::getPrimitiveTextureUV
std::vector< vec2 > getPrimitiveTextureUV(uint UUID) const
Get u-v texture coordinates at primitive vertices.
Definition Context.cpp:7052
-
helios::Context::primitiveTextureHasTransparencyChannel
bool primitiveTextureHasTransparencyChannel(uint UUID) const
Check if primitive texture map has a transparency channel.
Definition Context.cpp:7056
-
helios::Context::getPrimitiveType
PrimitiveType getPrimitiveType(uint UUID) const
Method to get the Primitive type.
Definition Context.cpp:6861
-
helios::Context::getPrimitiveTextureSize
helios::int2 getPrimitiveTextureSize(uint UUID) const
Get the size (number of pixels) of primitive texture map image.
Definition Context.cpp:7044
-
helios::Context::getDomainBoundingBox
void getDomainBoundingBox(helios::vec2 &xbounds, helios::vec2 &ybounds, helios::vec2 &zbounds) const
Get a box that bounds all primitives in the domain.
Definition Context.cpp:2031
-
helios::Context::getAllUUIDs
std::vector< uint > getAllUUIDs() const
Get all primitive UUIDs currently in the Context.
Definition Context.cpp:1758
-
helios::Context::getPrimitiveTextureTransparencyData
const std::vector< std::vector< bool > > * getPrimitiveTextureTransparencyData(uint UUID) const
Get the transparency channel pixel data from primitive texture map. If transparency channel does not ...
Definition Context.cpp:7064
-
helios::Context::getPrimitiveVertices
std::vector< helios::vec3 > getPrimitiveVertices(uint UUID) const
Method to return the (x,y,z) coordinates of the vertices of a Primitive.
Definition Context.cpp:6999
+
helios::Context::randu
float randu()
Draw a random number from a uniform distribution between 0 and 1.
Definition Context.cpp:1168
+
helios::Context::getPrimitiveTextureFile
std::string getPrimitiveTextureFile(uint UUID) const
Get the path to texture map file for primitive. If primitive does not have a texture map,...
Definition Context.cpp:7103
+
helios::Context::getPrimitiveTextureUV
std::vector< vec2 > getPrimitiveTextureUV(uint UUID) const
Get u-v texture coordinates at primitive vertices.
Definition Context.cpp:7119
+
helios::Context::primitiveTextureHasTransparencyChannel
bool primitiveTextureHasTransparencyChannel(uint UUID) const
Check if primitive texture map has a transparency channel.
Definition Context.cpp:7123
+
helios::Context::getPrimitiveType
PrimitiveType getPrimitiveType(uint UUID) const
Method to get the Primitive type.
Definition Context.cpp:6928
+
helios::Context::getPrimitiveTextureSize
helios::int2 getPrimitiveTextureSize(uint UUID) const
Get the size (number of pixels) of primitive texture map image.
Definition Context.cpp:7111
+
helios::Context::getDomainBoundingBox
void getDomainBoundingBox(helios::vec2 &xbounds, helios::vec2 &ybounds, helios::vec2 &zbounds) const
Get a box that bounds all primitives in the domain.
Definition Context.cpp:2026
+
helios::Context::getAllUUIDs
std::vector< uint > getAllUUIDs() const
Get all primitive UUIDs currently in the Context.
Definition Context.cpp:1753
+
helios::Context::getPrimitiveTextureTransparencyData
const std::vector< std::vector< bool > > * getPrimitiveTextureTransparencyData(uint UUID) const
Get the transparency channel pixel data from primitive texture map. If transparency channel does not ...
Definition Context.cpp:7131
+
helios::Context::getPrimitiveVertices
std::vector< helios::vec3 > getPrimitiveVertices(uint UUID) const
Method to return the (x,y,z) coordinates of the vertices of a Primitive.
Definition Context.cpp:7066
helios::cart2sphere
SphericalCoord cart2sphere(const vec3 &Cartesian)
Convert Cartesian coordinates to spherical coordinates.
Definition global.cpp:610
helios::atan2_2pi
float atan2_2pi(float y, float x)
Four quadrant arc tangent between 0 and 2*pi.
Definition global.cpp:584
helios::sphere2cart
vec3 sphere2cart(const SphericalCoord &Spherical)
Convert Spherical coordinates to Cartesian coordinates.
Definition global.cpp:617
helios::acos_safe
float acos_safe(float x)
arccosine function to handle cases when round-off errors cause an argument <-1 or >1,...
Definition global.cpp:241
helios::make_int2
int2 make_int2(int x, int y)
Make an int2 vector from two ints.
Definition helios_vector_types.h:99
-
helios::cross
vec3 cross(const vec3 &a, const vec3 &b)
Cross product of two vec3 vectors.
Definition helios_vector_types.h:597
+
helios::cross
vec3 cross(const vec3 &a, const vec3 &b)
Cross product of two vec3 vectors.
Definition helios_vector_types.h:599
helios::int2
Vector of two elements of type 'int'.
Definition helios_vector_types.h:44
helios::int2::y
int y
Second element in vector.
Definition helios_vector_types.h:50
helios::int2::x
int x
First element in vector.
Definition helios_vector_types.h:48
@@ -1804,10 +1804,10 @@
helios::vec2
Vector of two elements of type 'float'.
Definition helios_vector_types.h:346
helios::vec2::x
float x
First element in vector.
Definition helios_vector_types.h:350
helios::vec2::y
float y
Second element in vector.
Definition helios_vector_types.h:352
-
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:502
-
helios::vec3::x
float x
First element in vector.
Definition helios_vector_types.h:506
-
helios::vec3::z
float z
Third element in vector.
Definition helios_vector_types.h:510
-
helios::vec3::y
float y
Second element in vector.
Definition helios_vector_types.h:508
+
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:503
+
helios::vec3::x
float x
First element in vector.
Definition helios_vector_types.h:507
+
helios::vec3::z
float z
Third element in vector.
Definition helios_vector_types.h:511
+
helios::vec3::y
float y
Second element in vector.
Definition helios_vector_types.h:509
diff --git a/doc/html/_aerial_li_d_a_r_8h.html b/doc/html/_aerial_li_d_a_r_8h.html index e5c606a06..1ddc0a1f2 100644 --- a/doc/html/_aerial_li_d_a_r_8h.html +++ b/doc/html/_aerial_li_d_a_r_8h.html @@ -38,7 +38,7 @@
diff --git a/doc/html/_aerial_li_d_a_r_8h_source.html b/doc/html/_aerial_li_d_a_r_8h_source.html index 1bc418671..94e6d1765 100644 --- a/doc/html/_aerial_li_d_a_r_8h_source.html +++ b/doc/html/_aerial_li_d_a_r_8h_source.html @@ -38,7 +38,7 @@ @@ -501,13 +501,13 @@
AerialScanMetadata::center
helios::vec3 center
(x,y,z) position of scan surface center
Definition AerialLiDAR.h:40
AerialScanMetadata::exitDiameter
float exitDiameter
Diameter of laser pulse at exit from the scanner.
Definition AerialLiDAR.h:53
AerialScanMetadata::scandensity
float scandensity
Scan density in points/m^2.
Definition AerialLiDAR.h:49
-
helios::RGBcolor
R-G-B color vector.
Definition helios_vector_types.h:841
-
helios::SphericalCoord
Vector of spherical coordinates (elevation,azimuth)
Definition helios_vector_types.h:1468
+
helios::RGBcolor
R-G-B color vector.
Definition helios_vector_types.h:844
+
helios::SphericalCoord
Vector of spherical coordinates (elevation,azimuth)
Definition helios_vector_types.h:1471
helios::int2
Vector of two elements of type 'int'.
Definition helios_vector_types.h:44
helios::int3
Vector of three elements of type 'int'.
Definition helios_vector_types.h:146
helios::vec2
Vector of two elements of type 'float'.
Definition helios_vector_types.h:346
-
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:502
-
helios::vec4
Vector of four elements of type 'float'.
Definition helios_vector_types.h:671
+
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:503
+
helios::vec4
Vector of four elements of type 'float'.
Definition helios_vector_types.h:673
diff --git a/doc/html/_aerial_li_d_a_r_doc.html b/doc/html/_aerial_li_d_a_r_doc.html index d7486208d..4cf1bf522 100644 --- a/doc/html/_aerial_li_d_a_r_doc.html +++ b/doc/html/_aerial_li_d_a_r_doc.html @@ -38,7 +38,7 @@
diff --git a/doc/html/_assets_8cpp.html b/doc/html/_assets_8cpp.html index e5ede1909..c1c27f9ec 100644 --- a/doc/html/_assets_8cpp.html +++ b/doc/html/_assets_8cpp.html @@ -38,7 +38,7 @@ @@ -125,6 +125,16 @@ + + + + + + + + + + @@ -163,8 +173,38 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + @@ -252,7 +292,7 @@

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Definition at line 131 of file Assets.cpp.

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Definition at line 137 of file Assets.cpp.

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Definition at line 134 of file Assets.cpp.

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◆ AppledPhytomerCreationFunction()

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PropertyGetter Function
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void AlmondPhytomerCallbackFunction (std::shared_ptr< Phytomer > phytomer)
 
uint AppleLeafPrototype (helios::Context *context_ptr, uint subdivisions, int compound_leaf_index)
 
uint AppleFruitPrototype (helios::Context *context_ptr, uint subdivisions, float time_since_fruit_set)
 
uint AppleFlowerPrototype (helios::Context *context_ptr, uint subdivisions, bool flower_is_open)
 
void AppledPhytomerCreationFunction (std::shared_ptr< Phytomer > phytomer, uint shoot_node_index, uint parent_shoot_node_index, uint shoot_max_nodes, float plant_age)
 
void ApplePhytomerCallbackFunction (std::shared_ptr< Phytomer > phytomer)
 
uint AsparagusLeafPrototype (helios::Context *context_ptr, uint subdivisions, int compound_leaf_index)
 
void AsparagusPhytomerCreationFunction (std::shared_ptr< Phytomer > phytomer, uint shoot_node_index, uint parent_shoot_node_index, uint shoot_max_nodes, float plant_age)
 
void CowpeaPhytomerCreationFunction (std::shared_ptr< Phytomer > phytomer, uint shoot_node_index, uint parent_shoot_node_index, uint shoot_max_nodes, float plant_age)
 
uint GrapevineLeafPrototype (helios::Context *context_ptr, uint subdivisions, int compound_leaf_index)
 
float random_float (float min, float max)
 
bool spheres_overlap (const helios::vec3 &center1, float radius1, const helios::vec3 &center2, float radius2)
 
uint GrapevineFruitPrototype (helios::Context *context_ptr, uint subdivisions, float time_since_fruit_set)
 
void GrapevinePhytomerCreationFunction (std::shared_ptr< Phytomer > phytomer, uint shoot_node_index, uint parent_shoot_node_index, uint shoot_max_nodes, float plant_age)
 
uint PuncturevineLeafPrototype (helios::Context *context_ptr, uint subdivisions, int compound_leaf_index)
 
uint OliveLeafPrototype (helios::Context *context_ptr, uint subdivisions, int compound_leaf_index)
 
uint OliveFruitPrototype (helios::Context *context_ptr, uint subdivisions, float time_since_fruit_set)
 
uint OliveFlowerPrototype (helios::Context *context_ptr, uint subdivisions, bool flower_is_open)
 
void OlivePhytomerCreationFunction (std::shared_ptr< Phytomer > phytomer, uint shoot_node_index, uint parent_shoot_node_index, uint shoot_max_nodes, float plant_age)
 
void OlivePhytomerCallbackFunction (std::shared_ptr< Phytomer > phytomer)
 
uint PistachioLeafPrototype (helios::Context *context_ptr, uint subdivisions, int compound_leaf_index)
 
uint PistachioFruitPrototype (helios::Context *context_ptr, uint subdivisions, float time_since_fruit_set)
 
uint PistachioFlowerPrototype (helios::Context *context_ptr, uint subdivisions, bool flower_is_open)
 
void PistachioPhytomerCreationFunction (std::shared_ptr< Phytomer > phytomer, uint shoot_node_index, uint parent_shoot_node_index, uint shoot_max_nodes, float plant_age)
 
void PistachioPhytomerCallbackFunction (std::shared_ptr< Phytomer > phytomer)
 
uint PuncturevineFlowerPrototype (helios::Context *context_ptr, uint subdivisions, bool flower_is_open)
 
uint RedbudLeafPrototype (helios::Context *context_ptr, uint subdivisions, int compound_leaf_index)
+ + + + + + + + + + + + + + + + + + + + + + + + + +
void AppledPhytomerCreationFunction (std::shared_ptr< Phytomer > phytomer,
uint shoot_node_index,
uint parent_shoot_node_index,
uint shoot_max_nodes,
float plant_age )
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Definition at line 191 of file Assets.cpp.

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◆ AppleFlowerPrototype()

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uint AppleFlowerPrototype (helios::Context * context_ptr,
uint subdivisions,
bool flower_is_open )
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Definition at line 185 of file Assets.cpp.

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◆ AppleFruitPrototype()

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uint AppleFruitPrototype (helios::Context * context_ptr,
uint subdivisions,
float time_since_fruit_set )
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Definition at line 179 of file Assets.cpp.

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◆ AppleLeafPrototype()

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uint AppleLeafPrototype (helios::Context * context_ptr,
uint subdivisions,
int compound_leaf_index )
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Definition at line 161 of file Assets.cpp.

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◆ ApplePhytomerCallbackFunction()

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void ApplePhytomerCallbackFunction (std::shared_ptr< Phytomer > phytomer)
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Definition at line 208 of file Assets.cpp.

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◆ GrapevineFruitPrototype()

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uint GrapevineFruitPrototype (helios::Context * context_ptr,
uint subdivisions,
float time_since_fruit_set )
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Definition at line 498 of file Assets.cpp.

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◆ GrapevineLeafPrototype()

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uint GrapevineLeafPrototype (helios::Context * context_ptr,
uint subdivisions,
int compound_leaf_index )
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Definition at line 462 of file Assets.cpp.

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◆ GrapevinePhytomerCreationFunction()

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void GrapevinePhytomerCreationFunction (std::shared_ptr< Phytomer > phytomer,
uint shoot_node_index,
uint parent_shoot_node_index,
uint shoot_max_nodes,
float plant_age )
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Definition at line 584 of file Assets.cpp.

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◆ OliveFlowerPrototype()

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uint OliveFlowerPrototype (helios::Context * context_ptr,
uint subdivisions,
bool flower_is_open )
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Definition at line 654 of file Assets.cpp.

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◆ OliveFruitPrototype()

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uint OliveFruitPrototype (helios::Context * context_ptr,
uint subdivisions,
float time_since_fruit_set )
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Definition at line 645 of file Assets.cpp.

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◆ OliveLeafPrototype()

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uint OliveLeafPrototype (helios::Context * context_ptr,
uint subdivisions,
int compound_leaf_index )
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Definition at line 622 of file Assets.cpp.

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◆ OlivePhytomerCallbackFunction()

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void OlivePhytomerCallbackFunction (std::shared_ptr< Phytomer > phytomer)
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Definition at line 664 of file Assets.cpp.

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◆ OlivePhytomerCreationFunction()

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void OlivePhytomerCreationFunction (std::shared_ptr< Phytomer > phytomer,
uint shoot_node_index,
uint parent_shoot_node_index,
uint shoot_max_nodes,
float plant_age )
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Definition at line 660 of file Assets.cpp.

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◆ PistachioFlowerPrototype()

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uint PistachioFlowerPrototype (helios::Context * context_ptr,
uint subdivisions,
bool flower_is_open )
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Definition at line 700 of file Assets.cpp.

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◆ PistachioFruitPrototype()

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uint PistachioFruitPrototype (helios::Context * context_ptr,
uint subdivisions,
float time_since_fruit_set )
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Definition at line 694 of file Assets.cpp.

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◆ PistachioLeafPrototype()

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uint PistachioLeafPrototype (helios::Context * context_ptr,
uint subdivisions,
int compound_leaf_index )
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Definition at line 674 of file Assets.cpp.

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◆ PistachioPhytomerCallbackFunction()

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void PistachioPhytomerCallbackFunction (std::shared_ptr< Phytomer > phytomer)
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Definition at line 716 of file Assets.cpp.

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◆ PistachioPhytomerCreationFunction()

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void PistachioPhytomerCreationFunction (std::shared_ptr< Phytomer > phytomer,
uint shoot_node_index,
uint parent_shoot_node_index,
uint shoot_max_nodes,
float plant_age )
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◆ random_float()

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float random_float (float min,
float max )
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◆ spheres_overlap()

+ +
+
+ + + + + + + + + + + + + + + + + + + + + +
bool spheres_overlap (const helios::vec3 & center1,
float radius1,
const helios::vec3 & center2,
float radius2 )
+
+ +

Definition at line 489 of file Assets.cpp.

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-

Definition at line 722 of file Assets.cpp.

+

Definition at line 1030 of file Assets.cpp.

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+

Definition at line 1036 of file Assets.cpp.

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Definition at line 703 of file Assets.cpp.

+

Definition at line 1011 of file Assets.cpp.

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+

Definition at line 1042 of file Assets.cpp.

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Definition at line 785 of file Assets.cpp.

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Definition at line 779 of file Assets.cpp.

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Definition at line 1087 of file Assets.cpp.

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Definition at line 756 of file Assets.cpp.

+

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Definition at line 1099 of file Assets.cpp.

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Definition at line 810 of file Assets.cpp.

+

Definition at line 1118 of file Assets.cpp.

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diff --git a/doc/html/_assets_8cpp_source.html b/doc/html/_assets_8cpp_source.html index cde28648c..7be9ef9ce 100644 --- a/doc/html/_assets_8cpp_source.html +++ b/doc/html/_assets_8cpp_source.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
@@ -196,773 +196,1093 @@
103
104uint AlmondLeafPrototype( helios::Context* context_ptr, uint subdivisions, int compound_leaf_index ){
-
105// std::vector<uint> UUIDs = context_ptr->loadOBJ( "plugins/plantarchitecture/assets/obj/AlmondLeaf.obj", make_vec3(0.,0,0), 0, nullrotation, RGB::black, "ZUP", true );
-
106// uint objID = context_ptr->addPolymeshObject( UUIDs );
-
107// return objID;
-
108
-
109 std::string leaf_texture = "plugins/plantarchitecture/assets/textures/AlmondLeaf.png";
-
110
-
111 float leaf_aspect = 0.4; //ratio of leaf width to leaf length
-
112
-
113 float midrib_fold = 0.; //fraction of folding along midrib (=0 leaf is flat, =1 leaf is completely folded in half)
-
114
-
115 float longitudinal_curvature = 0.05; //curvature factor along x-direction. (+curves upward, -curved downward)
-
116
-
117 float lateral_curvature = 0.1; //curvature factor along y-direction. (+curves upward, -curved downward)
-
118
-
119 uint objID = buildGenericLeafPrototype(context_ptr, subdivisions, leaf_texture, leaf_aspect, midrib_fold, longitudinal_curvature, lateral_curvature, 0, 0, 0, false);
-
120
-
121 return objID;
-
122
-
123}
-
124
-
125uint AlmondFruitPrototype( helios::Context* context_ptr, uint subdivisions, float time_since_fruit_set ){
-
126 std::vector<uint> UUIDs = context_ptr->loadOBJ( "plugins/plantarchitecture/assets/obj/AlmondHull_lowres.obj", make_vec3(0.,0,0), 0,nullrotation, RGB::black, "ZUP", true );
-
127 uint objID = context_ptr->addPolymeshObject( UUIDs );
-
128 return objID;
-
129}
-
130
-
131uint AlmondFlowerPrototype( helios::Context* context_ptr, uint subdivisions, bool flower_is_open ){
-
132 std::vector<uint> UUIDs = context_ptr->loadOBJ( "plugins/plantarchitecture/assets/obj/AlmondFlower.obj", make_vec3(0.0,0,0), 0,nullrotation, RGB::black, "ZUP", true );
-
133 uint objID = context_ptr->addPolymeshObject( UUIDs );
-
134 return objID;
-
135}
-
136
-
137void AlmondPhytomerCreationFunction( std::shared_ptr<Phytomer> phytomer, uint shoot_node_index, uint parent_shoot_node_index, uint shoot_max_nodes, float plant_age ) {
-
138
-
139 if( phytomer->internode_length_max < 0.01 ){ //spurs
-
140 phytomer->setInternodeMaxRadius( 0.005 );
-
141 phytomer->setVegetativeBudState( BUD_DEAD );
-
142 phytomer->scaleLeafPrototypeScale( 0.8 );
-
143 phytomer->setFloralBudState( BUD_DEAD );
-
144 }
-
145
-
146 //blind nodes
-
147// if( shoot_node_index<3 ){
-
148// phytomer->setVegetativeBudState( BUD_DEAD );
-
149// phytomer->setFloralBudState( BUD_DEAD );
-
150// }
-
151
-
152}
-
153
-
154void AlmondPhytomerCallbackFunction( std::shared_ptr<Phytomer> phytomer ){
-
155
-
156 if( phytomer->isdormant ){
-
157 if( phytomer->shoot_index.x >= phytomer->shoot_index.y-3 && phytomer->internode_length_max > 0.01 ){
-
158 phytomer->setVegetativeBudState( BUD_DORMANT ); //first two vegetative buds always break
-
159 }
-
160 }
-
161
-
162}
-
163
-
164uint AsparagusLeafPrototype( helios::Context* context_ptr, uint subdivisions, int compound_leaf_index ){
-
165
-
166 float curve_magnitude = context_ptr->randu(0.f,0.2f);
-
167
-
168 std::vector<vec3> nodes;
-
169 nodes.push_back( make_vec3(0,0,0) );
-
170 nodes.push_back( make_vec3( context_ptr->randu(0.4f,0.7f),0,-0.25f*curve_magnitude) );
-
171 nodes.push_back( make_vec3(0.95,0,-0.9f*curve_magnitude) );
-
172 nodes.push_back( make_vec3(1,0,-curve_magnitude) );
-
173
-
174 std::vector<float> radius;
-
175 radius.push_back(0.015);
-
176 radius.push_back(0.015);
-
177 radius.push_back(0.015);
-
178 radius.push_back(0.0);
-
179
-
180 std::vector<RGBcolor> colors;
-
181 colors.push_back( RGB::forestgreen );
-
182 colors.push_back( RGB::forestgreen );
-
183 colors.push_back( RGB::forestgreen );
-
184 colors.push_back( RGB::forestgreen );
-
185
-
186 uint objID = context_ptr->addTubeObject( 8, nodes, radius, colors);
-
187 context_ptr->rotateObject( objID, context_ptr->randu(0,2.f*M_PI), "x" );
+
105
+
106 std::string leaf_texture = "plugins/plantarchitecture/assets/textures/AlmondLeaf.png";
+
107
+
108 float leaf_aspect = 0.4; //ratio of leaf width to leaf length
+
109
+
110 float midrib_fold = 0.; //fraction of folding along midrib (=0 leaf is flat, =1 leaf is completely folded in half)
+
111
+
112 float longitudinal_curvature = 0.05; //curvature factor along x-direction. (+curves upward, -curved downward)
+
113
+
114 float lateral_curvature = 0.1; //curvature factor along y-direction. (+curves upward, -curved downward)
+
115
+
116 uint objID = buildGenericLeafPrototype(context_ptr, subdivisions, leaf_texture, leaf_aspect, midrib_fold, longitudinal_curvature, lateral_curvature, 0, 0, 0, false);
+
117
+
118 return objID;
+
119
+
120}
+
121
+
122uint AlmondFruitPrototype( helios::Context* context_ptr, uint subdivisions, float time_since_fruit_set ){
+
123 std::vector<uint> UUIDs = context_ptr->loadOBJ( "plugins/plantarchitecture/assets/obj/AlmondHull_lowres.obj", make_vec3(0.,0,0), 0,nullrotation, RGB::black, "ZUP", true );
+
124 uint objID = context_ptr->addPolymeshObject( UUIDs );
+
125 return objID;
+
126}
+
127
+
128uint AlmondFlowerPrototype( helios::Context* context_ptr, uint subdivisions, bool flower_is_open ){
+
129 std::vector<uint> UUIDs = context_ptr->loadOBJ( "plugins/plantarchitecture/assets/obj/AlmondFlower.obj", make_vec3(0.0,0,0), 0,nullrotation, RGB::black, "ZUP", true );
+
130 uint objID = context_ptr->addPolymeshObject( UUIDs );
+
131 return objID;
+
132}
+
133
+
134void AlmondPhytomerCreationFunction( std::shared_ptr<Phytomer> phytomer, uint shoot_node_index, uint parent_shoot_node_index, uint shoot_max_nodes, float plant_age ) {
+
135
+
136 if( phytomer->internode_length_max < 0.01 ){ //spurs
+
137 phytomer->setInternodeMaxRadius( 0.005 );
+
138 phytomer->setVegetativeBudState( BUD_DEAD );
+
139 phytomer->scaleLeafPrototypeScale( 0.8 );
+
140 phytomer->setFloralBudState( BUD_DEAD );
+
141 }
+
142
+
143 //blind nodes
+
144// if( shoot_node_index<3 ){
+
145// phytomer->setVegetativeBudState( BUD_DEAD );
+
146// phytomer->setFloralBudState( BUD_DEAD );
+
147// }
+
148
+
149}
+
150
+
151void AlmondPhytomerCallbackFunction( std::shared_ptr<Phytomer> phytomer ){
+
152
+
153 if( phytomer->isdormant ){
+
154 if( phytomer->shoot_index.x >= phytomer->shoot_index.y-3 && phytomer->internode_length_max > 0.01 ){
+
155 phytomer->setVegetativeBudState( BUD_DORMANT ); //first two vegetative buds always break
+
156 }
+
157 }
+
158
+
159}
+
160
+
161uint AppleLeafPrototype( helios::Context* context_ptr, uint subdivisions, int compound_leaf_index ){
+
162
+
163 std::string leaf_texture = "plugins/plantarchitecture/assets/textures/AppleLeaf.png";
+
164
+
165 float leaf_aspect = 0.6; //ratio of leaf width to leaf length
+
166
+
167 float midrib_fold = 0.2; //fraction of folding along midrib (=0 leaf is flat, =1 leaf is completely folded in half)
+
168
+
169 float longitudinal_curvature = 0.1; //curvature factor along x-direction. (+curves upward, -curved downward)
+
170
+
171 float lateral_curvature = 0.1; //curvature factor along y-direction. (+curves upward, -curved downward)
+
172
+
173 uint objID = buildGenericLeafPrototype(context_ptr, subdivisions, leaf_texture, leaf_aspect, midrib_fold, longitudinal_curvature, lateral_curvature, 0, 0, 0, false);
+
174
+
175 return objID;
+
176
+
177}
+
178
+
179uint AppleFruitPrototype( helios::Context* context_ptr, uint subdivisions, float time_since_fruit_set ){
+
180 std::vector<uint> UUIDs = context_ptr->loadOBJ( "plugins/plantarchitecture/assets/obj/AppleFruit.obj", make_vec3(0.,0,0), 0,nullrotation, RGB::black, "ZUP", true );
+
181 uint objID = context_ptr->addPolymeshObject( UUIDs );
+
182 return objID;
+
183}
+
184
+
185uint AppleFlowerPrototype( helios::Context* context_ptr, uint subdivisions, bool flower_is_open ){
+
186 std::vector<uint> UUIDs = context_ptr->loadOBJ( "plugins/plantarchitecture/assets/obj/AlmondFlower.obj", make_vec3(0.0,0,0), 0,nullrotation, RGB::black, "ZUP", true );
+
187 uint objID = context_ptr->addPolymeshObject( UUIDs );
188 return objID;
189}
190
-
191void AsparagusPhytomerCreationFunction( std::shared_ptr<Phytomer> phytomer, uint shoot_node_index, uint parent_shoot_node_index, uint shoot_max_nodes, float plant_age ) {
+
191void AppledPhytomerCreationFunction( std::shared_ptr<Phytomer> phytomer, uint shoot_node_index, uint parent_shoot_node_index, uint shoot_max_nodes, float plant_age ) {
192
-
193 //blind nodes
-
194 if( shoot_node_index<=2 ){
-
195 phytomer->scaleLeafPrototypeScale( 0.6 );
-
196 phytomer->setVegetativeBudState( BUD_DEAD );
-
197 }
-
198
-
199}
-
200
-
201uint BeanLeafPrototype_unifoliate(helios::Context* context_ptr, uint subdivisions, int compound_leaf_index ){
-
202 std::string leaf_texture = "plugins/plantarchitecture/assets/textures/BeanLeaf_unifoliate_centered.png";
-
203
-
204 float leaf_aspect = 0.8; //ratio of leaf width to leaf length
+
193 if( phytomer->internode_length_max < 0.01 ){ //spurs
+
194 phytomer->setInternodeMaxRadius( 0.005 );
+
195 phytomer->setVegetativeBudState( BUD_DEAD );
+
196 phytomer->scaleLeafPrototypeScale( 0.8 );
+
197 phytomer->setFloralBudState( BUD_DEAD );
+
198 }
+
199
+
200 //blind nodes
+
201 if( shoot_node_index<3 ){
+
202 phytomer->setVegetativeBudState( BUD_DEAD );
+
203 phytomer->setFloralBudState( BUD_DEAD );
+
204 }
205
-
206 float midrib_fold = 0.2; //fraction of folding along midrib (=0 leaf is flat, =1 leaf is completely folded in half)
+
206}
207
-
208 float longitudinal_curvature = -0.2; //curvature factor along x-direction. (+curves upward, -curved downward)
+
208void ApplePhytomerCallbackFunction( std::shared_ptr<Phytomer> phytomer ){
209
-
210 float lateral_curvature = -0.1; //curvature factor along y-direction. (+curves upward, -curved downward)
-
211
-
212 return buildGenericLeafPrototype(context_ptr, subdivisions, leaf_texture, leaf_aspect, midrib_fold, longitudinal_curvature, lateral_curvature, 0, 0, 0, true);
-
213
-
214}
+
210 if( phytomer->isdormant ){
+
211 if( phytomer->shoot_index.x >= phytomer->shoot_index.y-3 && phytomer->internode_length_max > 0.01 ){
+
212 phytomer->setVegetativeBudState( BUD_DORMANT ); //first two vegetative buds always break
+
213 }
+
214 }
215
-
216uint BeanLeafPrototype_trifoliate(helios::Context* context_ptr, uint subdivisions, int compound_leaf_index ){
-
217 std::string leaf_texture;
-
218 if( compound_leaf_index==0 ){
-
219 leaf_texture = "plugins/plantarchitecture/assets/textures/BeanLeaf_tip.png";
-
220 }else if( compound_leaf_index<0 ){
-
221 leaf_texture = "plugins/plantarchitecture/assets/textures/BeanLeaf_left_centered.png";
-
222 }else{
-
223 leaf_texture = "plugins/plantarchitecture/assets/textures/BeanLeaf_right_centered.png";
-
224 }
-
225
-
226 float leaf_aspect = 1.0; //ratio of leaf width to leaf length
+
216}
+
217
+
218uint AsparagusLeafPrototype( helios::Context* context_ptr, uint subdivisions, int compound_leaf_index ){
+
219
+
220 float curve_magnitude = context_ptr->randu(0.f,0.2f);
+
221
+
222 std::vector<vec3> nodes;
+
223 nodes.push_back( make_vec3(0,0,0) );
+
224 nodes.push_back( make_vec3( context_ptr->randu(0.4f,0.7f),0,-0.25f*curve_magnitude) );
+
225 nodes.push_back( make_vec3(0.95,0,-0.9f*curve_magnitude) );
+
226 nodes.push_back( make_vec3(1,0,-curve_magnitude) );
227
-
228 float midrib_fold = 0.025; //fraction of folding along midrib (=0 leaf is flat, =1 leaf is completely folded in half)
-
229
-
230 float longitudinal_curvature = context_ptr->randu(-0.3f,-0.2f); //curvature factor along x-direction. (+curves upward, -curved downward)
-
231
-
232 float lateral_curvature = -1.; //curvature factor along y-direction. (+curves upward, -curved downward)
+
228 std::vector<float> radius;
+
229 radius.push_back(0.015);
+
230 radius.push_back(0.015);
+
231 radius.push_back(0.015);
+
232 radius.push_back(0.0);
233
-
234 return buildGenericLeafPrototype(context_ptr, subdivisions, leaf_texture, leaf_aspect, midrib_fold, longitudinal_curvature, lateral_curvature, 0, 0, 0, true);
-
235
-
236}
-
237
-
238uint BeanLeafPrototype_unifoliate_OBJ(helios::Context* context_ptr, uint subdivisions, int compound_leaf_index ){
-
239 std::vector<uint> UUIDs;
-
240 UUIDs = context_ptr->loadOBJ( "plugins/plantarchitecture/assets/obj/BeanLeaf_unifoliate.obj", true );
-
241
-
242 uint objID = context_ptr->addPolymeshObject( UUIDs );
-
243 return objID;
-
244}
-
245
-
246uint BeanLeafPrototype_trifoliate_OBJ(helios::Context* context_ptr, uint subdivisions, int compound_leaf_index ){
-
247 std::vector<uint> UUIDs;
-
248 if( compound_leaf_index==0 ){
-
249 UUIDs = context_ptr->loadOBJ( "plugins/plantarchitecture/assets/obj/BeanLeaf_tip.obj", true );
-
250 }else if( compound_leaf_index<0 ){
-
251 UUIDs = context_ptr->loadOBJ( "plugins/plantarchitecture/assets/obj/BeanLeaf_left.obj", true );
-
252 }else{
-
253 UUIDs = context_ptr->loadOBJ( "plugins/plantarchitecture/assets/obj/BeanLeaf_right.obj", true );
-
254 }
-
255 uint objID = context_ptr->addPolymeshObject( UUIDs );
-
256 return objID;
-
257}
-
258
-
259uint BeanFruitPrototype( helios::Context* context_ptr, uint subdivisions, float time_since_fruit_set ){
-
260 std::vector<uint> UUIDs = context_ptr->loadOBJ( "plugins/plantarchitecture/assets/obj/BeanPod.obj", true );
-
261 uint objID = context_ptr->addPolymeshObject( UUIDs );
-
262 return objID;
-
263}
-
264
-
265uint BeanFlowerPrototype( helios::Context* context_ptr, uint subdivisions, bool flower_is_open ){
-
266 std::vector<uint> UUIDs;
-
267 if( flower_is_open ){
-
268 UUIDs = context_ptr->loadOBJ( "plugins/plantarchitecture/assets/obj/BeanFlower_open_white.obj", true );
-
269 }else{
-
270 UUIDs = context_ptr->loadOBJ( "plugins/plantarchitecture/assets/obj/BeanFlower_closed_white.obj", true );
-
271 }
-
272 uint objID = context_ptr->addPolymeshObject( UUIDs );
-
273 return objID;
-
274}
-
275
-
276void BeanPhytomerCreationFunction( std::shared_ptr<Phytomer> phytomer, uint shoot_node_index, uint parent_shoot_node_index, uint shoot_max_nodes, float plant_age ){
-
277
-
278 if( shoot_node_index>5 || phytomer->rank>1 ) {
-
279 phytomer->setVegetativeBudState(BUD_DEAD);
-
280 }else{
-
281 phytomer->setFloralBudState(BUD_DEAD);
-
282 }
+
234 std::vector<RGBcolor> colors;
+
235 colors.push_back( RGB::forestgreen );
+
236 colors.push_back( RGB::forestgreen );
+
237 colors.push_back( RGB::forestgreen );
+
238 colors.push_back( RGB::forestgreen );
+
239
+
240 uint objID = context_ptr->addTubeObject( 8, nodes, radius, colors);
+
241 context_ptr->rotateObject( objID, context_ptr->randu(0,2.f*M_PI), "x" );
+
242 return objID;
+
243}
+
244
+
245void AsparagusPhytomerCreationFunction( std::shared_ptr<Phytomer> phytomer, uint shoot_node_index, uint parent_shoot_node_index, uint shoot_max_nodes, float plant_age ) {
+
246
+
247 //blind nodes
+
248 if( shoot_node_index<=2 ){
+
249 phytomer->scaleLeafPrototypeScale( 0.6 );
+
250 phytomer->setVegetativeBudState( BUD_DEAD );
+
251 }
+
252
+
253}
+
254
+
255uint BeanLeafPrototype_unifoliate(helios::Context* context_ptr, uint subdivisions, int compound_leaf_index ){
+
256 std::string leaf_texture = "plugins/plantarchitecture/assets/textures/BeanLeaf_unifoliate_centered.png";
+
257
+
258 float leaf_aspect = 0.8; //ratio of leaf width to leaf length
+
259
+
260 float midrib_fold = 0.2; //fraction of folding along midrib (=0 leaf is flat, =1 leaf is completely folded in half)
+
261
+
262 float longitudinal_curvature = -0.2; //curvature factor along x-direction. (+curves upward, -curved downward)
+
263
+
264 float lateral_curvature = -0.1; //curvature factor along y-direction. (+curves upward, -curved downward)
+
265
+
266 return buildGenericLeafPrototype(context_ptr, subdivisions, leaf_texture, leaf_aspect, midrib_fold, longitudinal_curvature, lateral_curvature, 0, 0, 0, true);
+
267
+
268}
+
269
+
270uint BeanLeafPrototype_trifoliate(helios::Context* context_ptr, uint subdivisions, int compound_leaf_index ){
+
271 std::string leaf_texture;
+
272 if( compound_leaf_index==0 ){
+
273 leaf_texture = "plugins/plantarchitecture/assets/textures/BeanLeaf_tip.png";
+
274 }else if( compound_leaf_index<0 ){
+
275 leaf_texture = "plugins/plantarchitecture/assets/textures/BeanLeaf_left_centered.png";
+
276 }else{
+
277 leaf_texture = "plugins/plantarchitecture/assets/textures/BeanLeaf_right_centered.png";
+
278 }
+
279
+
280 float leaf_aspect = 1.0; //ratio of leaf width to leaf length
+
281
+
282 float midrib_fold = 0.025; //fraction of folding along midrib (=0 leaf is flat, =1 leaf is completely folded in half)
283
-
284 //set leaf and internode scale based on position along the shoot
-
285 float leaf_scale = fmin(1.f, 0.2 + 0.8 * plant_age / 15.f);
-
286 phytomer->scaleLeafPrototypeScale(leaf_scale);
+
284 float longitudinal_curvature = context_ptr->randu(-0.3f,-0.2f); //curvature factor along x-direction. (+curves upward, -curved downward)
+
285
+
286 float lateral_curvature = -1.; //curvature factor along y-direction. (+curves upward, -curved downward)
287
-
288 //set internode length based on position along the shoot
-
289 float inode_scale = fmin(1.f, 0.1 + 0.9 * plant_age / 15.f);
-
290 phytomer->scaleInternodeMaxLength(inode_scale);
+
288 return buildGenericLeafPrototype(context_ptr, subdivisions, leaf_texture, leaf_aspect, midrib_fold, longitudinal_curvature, lateral_curvature, 0, 0, 0, true);
+
289
+
290}
291
-
292}
-
293
-
294uint BindweedLeafPrototype( helios::Context* context_ptr, uint subdivisions, int compound_leaf_index ){
-
295 std::vector<uint> UUIDs = context_ptr->loadOBJ( "plugins/plantarchitecture/assets/obj/BindweedLeaf.obj", true );
+
292uint BeanLeafPrototype_unifoliate_OBJ(helios::Context* context_ptr, uint subdivisions, int compound_leaf_index ){
+
293 std::vector<uint> UUIDs;
+
294 UUIDs = context_ptr->loadOBJ( "plugins/plantarchitecture/assets/obj/BeanLeaf_unifoliate.obj", true );
+
295
296 uint objID = context_ptr->addPolymeshObject( UUIDs );
297 return objID;
298}
299
-
300uint BindweedFlowerPrototype( helios::Context* context_ptr, uint subdivisions, bool flower_is_open ){
-
301 std::vector<uint> UUIDs = context_ptr->loadOBJ( "plugins/plantarchitecture/assets/obj/BindweedFlower.obj", true );
-
302 uint objID = context_ptr->addPolymeshObject( UUIDs );
-
303 return objID;
-
304}
-
305
-
306uint CheeseweedLeafPrototype( helios::Context* context_ptr, uint subdivisions, int compound_leaf_index ){
-
307 std::vector<uint> UUIDs = context_ptr->loadOBJ( "plugins/plantarchitecture/assets/obj/CheeseweedLeaf.obj", true );
-
308 uint objID = context_ptr->addPolymeshObject( UUIDs );
-
309 return objID;
-
310}
-
311
-
312uint CowpeaLeafPrototype_unifoliate(helios::Context* context_ptr, uint subdivisions, int compound_leaf_index ){
-
313 std::string leaf_texture = "plugins/plantarchitecture/assets/textures/CowpeaLeaf_unifoliate_centered.png";
-
314
-
315 float leaf_aspect = 0.8; //ratio of leaf width to leaf length
-
316
-
317 float midrib_fold = 0.2; //fraction of folding along midrib (=0 leaf is flat, =1 leaf is completely folded in half)
+
300uint BeanLeafPrototype_trifoliate_OBJ(helios::Context* context_ptr, uint subdivisions, int compound_leaf_index ){
+
301 std::vector<uint> UUIDs;
+
302 if( compound_leaf_index==0 ){
+
303 UUIDs = context_ptr->loadOBJ( "plugins/plantarchitecture/assets/obj/BeanLeaf_tip.obj", true );
+
304 }else if( compound_leaf_index<0 ){
+
305 UUIDs = context_ptr->loadOBJ( "plugins/plantarchitecture/assets/obj/BeanLeaf_left.obj", true );
+
306 }else{
+
307 UUIDs = context_ptr->loadOBJ( "plugins/plantarchitecture/assets/obj/BeanLeaf_right.obj", true );
+
308 }
+
309 uint objID = context_ptr->addPolymeshObject( UUIDs );
+
310 return objID;
+
311}
+
312
+
313uint BeanFruitPrototype( helios::Context* context_ptr, uint subdivisions, float time_since_fruit_set ){
+
314 std::vector<uint> UUIDs = context_ptr->loadOBJ( "plugins/plantarchitecture/assets/obj/BeanPod.obj", true );
+
315 uint objID = context_ptr->addPolymeshObject( UUIDs );
+
316 return objID;
+
317}
318
-
319 float longitudinal_curvature = -0.2; //curvature factor along x-direction. (+curves upward, -curved downward)
-
320
-
321 float lateral_curvature = -0.1; //curvature factor along y-direction. (+curves upward, -curved downward)
-
322
-
323 return buildGenericLeafPrototype(context_ptr, subdivisions, leaf_texture, leaf_aspect, midrib_fold, longitudinal_curvature, lateral_curvature, 0, 0, 0, false);
-
324
-
325}
-
326
-
327uint CowpeaLeafPrototype_trifoliate(helios::Context* context_ptr, uint subdivisions, int compound_leaf_index ){
-
328 std::string leaf_texture;
-
329 if( compound_leaf_index==0 ){
-
330 leaf_texture = "plugins/plantarchitecture/assets/textures/CowpeaLeaf_tip_centered.png";
-
331 }else if( compound_leaf_index<0 ){
-
332 leaf_texture = "plugins/plantarchitecture/assets/textures/CowpeaLeaf_left.png";
-
333 }else{
-
334 leaf_texture = "plugins/plantarchitecture/assets/textures/CowpeaLeaf_right.png";
-
335 }
-
336
-
337 float leaf_aspect = 0.8; //ratio of leaf width to leaf length
-
338
-
339 float midrib_fold = 0.2; //fraction of folding along midrib (=0 leaf is flat, =1 leaf is completely folded in half)
+
319uint BeanFlowerPrototype( helios::Context* context_ptr, uint subdivisions, bool flower_is_open ){
+
320 std::vector<uint> UUIDs;
+
321 if( flower_is_open ){
+
322 UUIDs = context_ptr->loadOBJ( "plugins/plantarchitecture/assets/obj/BeanFlower_open_white.obj", true );
+
323 }else{
+
324 UUIDs = context_ptr->loadOBJ( "plugins/plantarchitecture/assets/obj/BeanFlower_closed_white.obj", true );
+
325 }
+
326 uint objID = context_ptr->addPolymeshObject( UUIDs );
+
327 return objID;
+
328}
+
329
+
330void BeanPhytomerCreationFunction( std::shared_ptr<Phytomer> phytomer, uint shoot_node_index, uint parent_shoot_node_index, uint shoot_max_nodes, float plant_age ){
+
331
+
332 if( shoot_node_index>5 || phytomer->rank>1 ) {
+
333 phytomer->setVegetativeBudState(BUD_DEAD);
+
334 }else{
+
335 phytomer->setFloralBudState(BUD_DEAD);
+
336 }
+
337 if( shoot_node_index<=1 && phytomer->rank == 0 ){
+
338 phytomer->setVegetativeBudState(BUD_ACTIVE);
+
339 }
340
-
341 float longitudinal_curvature = context_ptr->randu(-0.4f,-0.1f); //curvature factor along x-direction. (+curves upward, -curved downward)
-
342
-
343 float lateral_curvature = -0.4; //curvature factor along y-direction. (+curves upward, -curved downward)
+
341 //set leaf and internode scale based on position along the shoot
+
342 float leaf_scale = fmin(1.f, 0.2 + 0.8 * plant_age / 15.f);
+
343 phytomer->scaleLeafPrototypeScale(leaf_scale);
344
-
345 return buildGenericLeafPrototype(context_ptr, subdivisions, leaf_texture, leaf_aspect, midrib_fold, longitudinal_curvature, lateral_curvature, 0, 0, 0, true);
-
346
-
347}
+
345 //set internode length based on position along the shoot
+
346 float inode_scale = fmin(1.f, 0.1 + 0.9 * plant_age / 15.f);
+
347 phytomer->scaleInternodeMaxLength(inode_scale);
348
-
349uint CowpeaLeafPrototype_unifoliate_OBJ(helios::Context* context_ptr, uint subdivisions, int compound_leaf_index ){
-
350 std::vector<uint> UUIDs;
-
351 UUIDs = context_ptr->loadOBJ( "plugins/plantarchitecture/assets/obj/CowpeaLeaf_unifoliate.obj", make_vec3(0.,0,0), 0, nullrotation, RGB::black, "ZUP", true );
-
352
+
349}
+
350
+
351uint BindweedLeafPrototype( helios::Context* context_ptr, uint subdivisions, int compound_leaf_index ){
+
352 std::vector<uint> UUIDs = context_ptr->loadOBJ( "plugins/plantarchitecture/assets/obj/BindweedLeaf.obj", true );
353 uint objID = context_ptr->addPolymeshObject( UUIDs );
354 return objID;
355}
356
-
357uint CowpeaLeafPrototype_trifoliate_OBJ(helios::Context* context_ptr, uint subdivisions, int compound_leaf_index ){
-
358 std::vector<uint> UUIDs;
-
359 if( compound_leaf_index<0 ){
-
360 UUIDs = context_ptr->loadOBJ( "plugins/plantarchitecture/assets/obj/CowpeaLeaf_left_highres.obj", make_vec3(0.,0,0), 0, nullrotation, RGB::black, "ZUP", true );
-
361 }else if( compound_leaf_index==0 ){
-
362 UUIDs = context_ptr->loadOBJ( "plugins/plantarchitecture/assets/obj/CowpeaLeaf_tip_highres.obj", make_vec3(0.,0,0), 0, nullrotation, RGB::black, "ZUP", true );
-
363 }else{
-
364 UUIDs = context_ptr->loadOBJ( "plugins/plantarchitecture/assets/obj/CowpeaLeaf_right_highres.obj", make_vec3(0.,0,0), 0, nullrotation, RGB::black, "ZUP", true );
-
365 }
-
366 uint objID = context_ptr->addPolymeshObject( UUIDs );
-
367 return objID;
-
368}
-
369
-
370uint CowpeaFruitPrototype( helios::Context* context_ptr, uint subdivisions, float time_since_fruit_set ){
-
371 std::vector<uint> UUIDs = context_ptr->loadOBJ( "plugins/plantarchitecture/assets/obj/CowpeaPod.obj", make_vec3(0.,0,0), 0.75,nullrotation, RGB::black, "ZUP", true );
-
372 uint objID = context_ptr->addPolymeshObject( UUIDs );
-
373 return objID;
-
374}
+
357uint BindweedFlowerPrototype( helios::Context* context_ptr, uint subdivisions, bool flower_is_open ){
+
358 std::vector<uint> UUIDs = context_ptr->loadOBJ( "plugins/plantarchitecture/assets/obj/BindweedFlower.obj", true );
+
359 uint objID = context_ptr->addPolymeshObject( UUIDs );
+
360 return objID;
+
361}
+
362
+
363uint CheeseweedLeafPrototype( helios::Context* context_ptr, uint subdivisions, int compound_leaf_index ){
+
364 std::vector<uint> UUIDs = context_ptr->loadOBJ( "plugins/plantarchitecture/assets/obj/CheeseweedLeaf.obj", true );
+
365 uint objID = context_ptr->addPolymeshObject( UUIDs );
+
366 return objID;
+
367}
+
368
+
369uint CowpeaLeafPrototype_unifoliate(helios::Context* context_ptr, uint subdivisions, int compound_leaf_index ){
+
370 std::string leaf_texture = "plugins/plantarchitecture/assets/textures/CowpeaLeaf_unifoliate_centered.png";
+
371
+
372 float leaf_aspect = 0.8; //ratio of leaf width to leaf length
+
373
+
374 float midrib_fold = 0.2; //fraction of folding along midrib (=0 leaf is flat, =1 leaf is completely folded in half)
375
-
376uint CowpeaFlowerPrototype( helios::Context* context_ptr, uint subdivisions, bool flower_is_open ){
-
377 std::vector<uint> UUIDs;
-
378 if( flower_is_open ){
-
379 UUIDs = context_ptr->loadOBJ( "plugins/plantarchitecture/assets/obj/CowpeaFlower_open_yellow.obj", make_vec3(0.0,0,0), 0,nullrotation, RGB::black, "ZUP", true );
-
380 }else{
-
381 UUIDs = context_ptr->loadOBJ( "plugins/plantarchitecture/assets/obj/CowpeaFlower_closed_yellow.obj", make_vec3(0.0,0,0), 0,nullrotation, RGB::black, "ZUP", true );
-
382 }
-
383 uint objID = context_ptr->addPolymeshObject( UUIDs );
-
384 return objID;
-
385}
-
386
-
387void CowpeaPhytomerCreationFunction( std::shared_ptr<Phytomer> phytomer, uint shoot_node_index, uint parent_shoot_node_index, uint shoot_max_nodes, float plant_age ){
-
388
-
389 if( shoot_node_index>5 || phytomer->rank>1 ) {
-
390 phytomer->setVegetativeBudState(BUD_DEAD);
-
391 }else{
-
392 phytomer->setFloralBudState(BUD_DEAD);
-
393 }
-
394
-
395 //set leaf and internode scale based on position along the shoot
-
396 float leaf_scale = fmin(1.f, 0.2 + 0.8 * plant_age / 15.f);
-
397 phytomer->scaleLeafPrototypeScale(leaf_scale);
-
398
-
399 //set internode length based on position along the shoot
-
400 float inode_scale = fmin(1.f, 0.1 + 0.9 * plant_age / 15.f);
-
401 phytomer->scaleInternodeMaxLength(inode_scale);
-
402
-
403}
-
404
-
405uint PuncturevineLeafPrototype( helios::Context* context_ptr, uint subdivisions, int compound_leaf_index ){
-
406
-
407 std::string leaf_texture = "plugins/plantarchitecture/assets/textures/PuncturevineLeaf.png";
-
408
-
409 float leaf_aspect = 0.4; //ratio of leaf width to leaf length
-
410
-
411 float midrib_fold = 0.2; //fraction of folding along midrib (=0 leaf is flat, =1 leaf is completely folded in half)
-
412
-
413 float longitudinal_curvature = -0.1; //curvature factor along x-direction. (+curves upward, -curved downward)
-
414
-
415 float lateral_curvature = 0.4; //curvature factor along y-direction. (+curves upward, -curved downward)
-
416
-
417 return buildGenericLeafPrototype(context_ptr, subdivisions, leaf_texture, leaf_aspect, midrib_fold, longitudinal_curvature, lateral_curvature, 0, 0, 0, false);
-
418
-
419}
-
420
-
421uint PuncturevineFlowerPrototype( helios::Context* context_ptr, uint subdivisions, bool flower_is_open ){
-
422 std::vector<uint> UUIDs = context_ptr->loadOBJ( "plugins/plantarchitecture/assets/obj/PuncturevineFlower.obj", make_vec3(0.0,0,0), 0,nullrotation, RGB::black, "ZUP", true );
+
376 float longitudinal_curvature = -0.2; //curvature factor along x-direction. (+curves upward, -curved downward)
+
377
+
378 float lateral_curvature = -0.1; //curvature factor along y-direction. (+curves upward, -curved downward)
+
379
+
380 return buildGenericLeafPrototype(context_ptr, subdivisions, leaf_texture, leaf_aspect, midrib_fold, longitudinal_curvature, lateral_curvature, 0, 0, 0, false);
+
381
+
382}
+
383
+
384uint CowpeaLeafPrototype_trifoliate(helios::Context* context_ptr, uint subdivisions, int compound_leaf_index ){
+
385 std::string leaf_texture;
+
386 if( compound_leaf_index==0 ){
+
387 leaf_texture = "plugins/plantarchitecture/assets/textures/CowpeaLeaf_tip_centered.png";
+
388 }else if( compound_leaf_index<0 ){
+
389 leaf_texture = "plugins/plantarchitecture/assets/textures/CowpeaLeaf_left.png";
+
390 }else{
+
391 leaf_texture = "plugins/plantarchitecture/assets/textures/CowpeaLeaf_right.png";
+
392 }
+
393
+
394 float leaf_aspect = 0.8; //ratio of leaf width to leaf length
+
395
+
396 float midrib_fold = 0.2; //fraction of folding along midrib (=0 leaf is flat, =1 leaf is completely folded in half)
+
397
+
398 float longitudinal_curvature = context_ptr->randu(-0.4f,-0.1f); //curvature factor along x-direction. (+curves upward, -curved downward)
+
399
+
400 float lateral_curvature = -0.4; //curvature factor along y-direction. (+curves upward, -curved downward)
+
401
+
402 return buildGenericLeafPrototype(context_ptr, subdivisions, leaf_texture, leaf_aspect, midrib_fold, longitudinal_curvature, lateral_curvature, 0, 0, 0, true);
+
403
+
404}
+
405
+
406uint CowpeaLeafPrototype_unifoliate_OBJ(helios::Context* context_ptr, uint subdivisions, int compound_leaf_index ){
+
407 std::vector<uint> UUIDs;
+
408 UUIDs = context_ptr->loadOBJ( "plugins/plantarchitecture/assets/obj/CowpeaLeaf_unifoliate.obj", make_vec3(0.,0,0), 0, nullrotation, RGB::black, "ZUP", true );
+
409
+
410 uint objID = context_ptr->addPolymeshObject( UUIDs );
+
411 return objID;
+
412}
+
413
+
414uint CowpeaLeafPrototype_trifoliate_OBJ(helios::Context* context_ptr, uint subdivisions, int compound_leaf_index ){
+
415 std::vector<uint> UUIDs;
+
416 if( compound_leaf_index<0 ){
+
417 UUIDs = context_ptr->loadOBJ( "plugins/plantarchitecture/assets/obj/CowpeaLeaf_left_highres.obj", make_vec3(0.,0,0), 0, nullrotation, RGB::black, "ZUP", true );
+
418 }else if( compound_leaf_index==0 ){
+
419 UUIDs = context_ptr->loadOBJ( "plugins/plantarchitecture/assets/obj/CowpeaLeaf_tip_highres.obj", make_vec3(0.,0,0), 0, nullrotation, RGB::black, "ZUP", true );
+
420 }else{
+
421 UUIDs = context_ptr->loadOBJ( "plugins/plantarchitecture/assets/obj/CowpeaLeaf_right_highres.obj", make_vec3(0.,0,0), 0, nullrotation, RGB::black, "ZUP", true );
+
422 }
423 uint objID = context_ptr->addPolymeshObject( UUIDs );
424 return objID;
425}
426
-
427uint RedbudLeafPrototype( helios::Context* context_ptr, uint subdivisions, int compound_leaf_index ){
-
428 std::string leaf_texture = "plugins/plantarchitecture/assets/textures/RedbudLeaf.png";
-
429
-
430 float leaf_aspect = 1.0; //ratio of leaf width to leaf length
-
431
-
432 float midrib_fold = 0.2; //fraction of folding along midrib (=0 leaf is flat, =1 leaf is completely folded in half)
-
433
-
434 float longitudinal_curvature = -0.15; //curvature factor along x-direction. (+curves upward, -curved downward)
-
435
-
436 float lateral_curvature = -0.1; //curvature factor along y-direction. (+curves upward, -curved downward)
-
437
-
438 //parameters for leaf wave/wrinkles
-
439 float wave_period = 0.3f; //period factor of leaf waves
-
440 float wave_amplitude = 0.025f; // amplitude of leaf waves
-
441
-
442 uint objID = buildGenericLeafPrototype(context_ptr, subdivisions, leaf_texture, leaf_aspect, midrib_fold, longitudinal_curvature, lateral_curvature, 0, wave_period, wave_amplitude, false);
-
443 context_ptr->translateObject( objID, make_vec3(-0.3,0,0) );
-
444
-
445 return objID;
-
446}
-
447
-
448uint RedbudFlowerPrototype( helios::Context* context_ptr, uint subdivisions, bool flower_is_open ){
-
449 std::vector<uint> UUIDs = context_ptr->loadOBJ( "plugins/plantarchitecture/assets/obj/RedbudFlower_open.obj", make_vec3(0.0,0,0), 0,nullrotation, RGB::black, "ZUP", true );
-
450 return context_ptr->addPolymeshObject( UUIDs );
-
451}
-
452
-
453uint RedbudFruitPrototype( helios::Context* context_ptr, uint subdivisions, float time_since_fruit_set ){
-
454 std::vector<uint> UUIDs = context_ptr->loadOBJ( "plugins/plantarchitecture/assets/obj/RedbudPod.obj", make_vec3(0.,0,0), 0,nullrotation, RGB::black, "ZUP", true );
-
455 return context_ptr->addPolymeshObject( UUIDs );
-
456}
-
457
-
458void RedbudPhytomerCreationFunction( std::shared_ptr<Phytomer> phytomer, uint shoot_node_index, uint parent_shoot_node_index, uint shoot_max_nodes, float plant_age ){
+
427uint CowpeaFruitPrototype( helios::Context* context_ptr, uint subdivisions, float time_since_fruit_set ){
+
428 std::vector<uint> UUIDs = context_ptr->loadOBJ( "plugins/plantarchitecture/assets/obj/CowpeaPod.obj", make_vec3(0.,0,0), 0.75,nullrotation, RGB::black, "ZUP", true );
+
429 uint objID = context_ptr->addPolymeshObject( UUIDs );
+
430 return objID;
+
431}
+
432
+
433uint CowpeaFlowerPrototype( helios::Context* context_ptr, uint subdivisions, bool flower_is_open ){
+
434 std::vector<uint> UUIDs;
+
435 if( flower_is_open ){
+
436 UUIDs = context_ptr->loadOBJ( "plugins/plantarchitecture/assets/obj/CowpeaFlower_open_yellow.obj", make_vec3(0.0,0,0), 0,nullrotation, RGB::black, "ZUP", true );
+
437 }else{
+
438 UUIDs = context_ptr->loadOBJ( "plugins/plantarchitecture/assets/obj/CowpeaFlower_closed_yellow.obj", make_vec3(0.0,0,0), 0,nullrotation, RGB::black, "ZUP", true );
+
439 }
+
440 uint objID = context_ptr->addPolymeshObject( UUIDs );
+
441 return objID;
+
442}
+
443
+
444void CowpeaPhytomerCreationFunction( std::shared_ptr<Phytomer> phytomer, uint shoot_node_index, uint parent_shoot_node_index, uint shoot_max_nodes, float plant_age ){
+
445
+
446 if( shoot_node_index>5 || phytomer->rank>1 ) {
+
447 phytomer->setVegetativeBudState(BUD_DEAD);
+
448 }else{
+
449 phytomer->setFloralBudState(BUD_DEAD);
+
450 }
+
451
+
452 //set leaf and internode scale based on position along the shoot
+
453 float leaf_scale = fmin(1.f, 0.2 + 0.8 * plant_age / 15.f);
+
454 phytomer->scaleLeafPrototypeScale(leaf_scale);
+
455
+
456 //set internode length based on position along the shoot
+
457 float inode_scale = fmin(1.f, 0.1 + 0.9 * plant_age / 15.f);
+
458 phytomer->scaleInternodeMaxLength(inode_scale);
459
460}
461
-
462void RedbudPhytomerCallbackFunction( std::shared_ptr<Phytomer> phytomer ){
+
462uint GrapevineLeafPrototype( helios::Context* context_ptr, uint subdivisions, int compound_leaf_index ){
463
-
464 int Nchild_shoots = randu(0,3);
+
464 std::string leaf_texture = "plugins/plantarchitecture/assets/textures/GrapeLeaf.png";
465
-
466 if( phytomer->isdormant ){
-
467 if( phytomer->rank<=1 ){
-
468 Nchild_shoots = std::max(2,Nchild_shoots);
-
469 }
-
470 if( phytomer->shoot_index.x < phytomer->shoot_index.y-Nchild_shoots ){
-
471 phytomer->setVegetativeBudState( BUD_DEAD );
-
472 }
-
473 else{
-
474 phytomer->setFloralBudState(BUD_DEAD);
-
475 }
-
476 }
-
477
-
478}
+
466 float leaf_aspect = 1.0; //ratio of leaf width to leaf length
+
467
+
468 float midrib_fold = 0.3; //fraction of folding along midrib (=0 leaf is flat, =1 leaf is completely folded in half)
+
469
+
470 float longitudinal_curvature = context_ptr->randu(-0.4f,0.4f); //curvature factor along x-direction. (+curves upward, -curved downward)
+
471
+
472 float lateral_curvature = 0.; //curvature factor along y-direction. (+curves upward, -curved downward)
+
473
+
474 float wave_period = 0.3f; //period factor of leaf waves
+
475 float wave_amplitude = 0.1f; // amplitude of leaf waves
+
476
+
477 uint objID = buildGenericLeafPrototype(context_ptr, subdivisions, leaf_texture, leaf_aspect, midrib_fold, longitudinal_curvature, lateral_curvature, 0, wave_period, wave_amplitude, false);
+
478 context_ptr->translateObject( objID, make_vec3(-0.3,0,0) );
479
-
480uint RomaineLettuceLeafPrototype( helios::Context* context_ptr, uint subdivisions, int compound_leaf_index ){
-
481
-
482 std::string leaf_texture = "plugins/plantarchitecture/assets/textures/RomaineLettuceLeaf.png";
-
483
-
484// float leaf_aspect = 0.65; //ratio of leaf width to leaf length
-
485 float leaf_aspect = 0.85; //ratio of leaf width to leaf length
-
486
-
487 float midrib_fold = 0.2; //fraction of folding along midrib (=0 leaf is flat, =1 leaf is completely folded in half)
-
488
-
489// float longitudinal_curvature = context_ptr->randu(-0.05f,0.2f); //curvature factor along x-direction. (+curves upward, -curved downward)
-
490 float longitudinal_curvature = context_ptr->randu(-0.2f,0.05f); //curvature factor along x-direction. (+curves upward, -curved downward)
-
491
-
492 float lateral_curvature = -0.4; //curvature factor along y-direction. (+curves upward, -curved downward)
-
493
-
494 float petiole_roll = 0; //add a small radius roll at the based of the leaf to better mate with the petiole. Value is the magnitude of the roll (+rolls upward, - rolls downward)
-
495
-
496 //parameters for leaf wave/wrinkles
-
497// float wave_period = context_ptr->randu( 0.1f, 0.2f); //period factor of leaf waves
-
498 float wave_period = context_ptr->randu( 0.15f, 0.25f); //period factor of leaf waves
-
499// float wave_amplitude = context_ptr->randu(0.03f,0.075f); // amplitude of leaf waves
-
500 float wave_amplitude = context_ptr->randu(0.05f,0.1f); // amplitude of leaf waves
-
501
-
502 return buildGenericLeafPrototype(context_ptr, subdivisions, leaf_texture, leaf_aspect, midrib_fold, longitudinal_curvature, lateral_curvature, petiole_roll, wave_period, wave_amplitude, false);
-
503
-
504}
+
480 return objID;
+
481}
+
482
+
483// Function to generate random float between min and max
+
484float random_float(float min, float max) {
+
485 return min + static_cast<float>(rand()) / (static_cast<float>(RAND_MAX/(max-min)));
+
486}
+
487
+
488// Function to check if two spheres overlap
+
489bool spheres_overlap(const helios::vec3& center1, float radius1, const helios::vec3& center2, float radius2) {
+
490 float distance = std::sqrt(
+
491 std::pow(center1.x - center2.x, 2) +
+
492 std::pow(center1.y - center2.y, 2) +
+
493 std::pow(center1.z - center2.z, 2)
+
494 );
+
495 return distance < (radius1 + radius2);
+
496}
+
497
+
498uint GrapevineFruitPrototype( helios::Context* context_ptr, uint subdivisions, float time_since_fruit_set ){
+
499
+
500 int num_grapes = 75;
+
501 float height = 7.0f; // Height of the cluster
+
502 float base_radius = 2.5f; // Base radius of the cluster
+
503 float taper_factor = 0.6f; // Taper factor (higher means more taper)
+
504 float grape_radius = 0.35f; // Fixed radius for each grape
505
-
506void RomaineLettucePhytomerCreationFunction( std::shared_ptr<Phytomer> phytomer, uint shoot_node_index, uint parent_shoot_node_index, uint shoot_max_nodes, float plant_age ){
-
507
-
508 float fact = float(shoot_max_nodes-shoot_node_index)/float(shoot_max_nodes);
-
509
-
510 //set leaf scale based on position along the shoot
-
511// float scale = fmin(1.f, 1 + 0.1*fact);
-
512// phytomer->scaleLeafPrototypeScale(scale);
-
513
-
514// phytomer->rotateLeaf( 0, 0, make_AxisRotation(-deg2rad(15)*fact, 0, 0));
-
515 phytomer->rotateLeaf( 0, 0, make_AxisRotation(-deg2rad(60)*fact, 0, 0));
-
516
-
517}
-
518
-
519uint SorghumLeafPrototype( helios::Context* context_ptr, uint subdivisions, int compound_leaf_index ){
+
506 std::vector<std::pair<helios::vec3, float>> grapes;
+
507 float z_step = height / num_grapes;
+
508
+
509 // Place the first grape at the bottom center
+
510 helios::vec3 first_center(0.0f, 0.0f, 0.0f);
+
511 grapes.push_back({first_center, grape_radius});
+
512
+
513 // Attempt to place each subsequent grape close to an existing grape
+
514 int max_attempts = 100; // Number of retries to find a tight fit
+
515
+
516 for (int i = 1; i < num_grapes; ++i) {
+
517 float z = i * z_step;
+
518 // Tapered radius based on height (denser at the top, sparser at the bottom)
+
519 float taper_radius = base_radius * (1.0f - taper_factor * (z / height));
520
-
521 std::string leaf_texture = "plugins/plantarchitecture/assets/textures/SorghumLeaf.png";
-
522
-
523 float leaf_aspect = 0.2; //ratio of leaf width to leaf length
-
524
-
525 float midrib_fold_fraction = 0.3;
-
526
-
527 float longitudinal_curvature = context_ptr->randu(-1.2f,-0.8f);
-
528 float lateral_curvature = -0.3;
-
529
-
530 float petiole_roll = 0.04f;
+
521 bool placed = false;
+
522 int attempts = 0;
+
523 while (!placed && attempts < max_attempts) {
+
524 // Randomly select an existing grape as the reference point
+
525 int reference_idx = rand() % grapes.size();
+
526 const helios::vec3& reference_center = grapes[reference_idx].first;
+
527
+
528 // Pick a random offset direction from the reference grape
+
529 float angle = random_float(0, 2 * M_PI);
+
530 float distance = random_float(1.2 * grape_radius, 1.3 * grape_radius); // Keep grapes close but not overlapping
531
-
532 //parameters for leaf wave/wrinkles
-
533 float wave_period = 0.1f; //period factor of leaf waves
-
534 float wave_amplitude = 0.1f; // amplitude of leaf waves
-
535
-
536 return buildGenericLeafPrototype(context_ptr, subdivisions, leaf_texture, leaf_aspect, midrib_fold_fraction, longitudinal_curvature, lateral_curvature, petiole_roll, wave_period, wave_amplitude, false);
-
537
-
538}
-
539
-
540uint SorghumPaniclePrototype( helios::Context* context_ptr, uint subdivisions, float time_since_fruit_set ){
-
541
-
542 if( subdivisions<=1 ){
-
543 subdivisions = 3;
-
544 }
+
532 // Compute the new potential center for the grape
+
533 helios::vec3 new_center(
+
534 reference_center.x + distance * cos(angle),
+
535 reference_center.y + distance * sin(angle),
+
536 random_float(z - 0.5f * z_step, z + 0.5f * z_step)
+
537 );
+
538
+
539 // Check that the new center is within the allowable radius (for tapering)
+
540 float new_center_distance = std::sqrt(new_center.x * new_center.x + new_center.y * new_center.y);
+
541 if (new_center_distance > taper_radius) {
+
542 attempts++;
+
543 continue; // Skip if the new position exceeds the tapered radius
+
544 }
545
-
546 float panicle_height = 1;
-
547 float panicle_width = 0.08;
-
548 float width_seed = 0.08;
-
549 float height_seed = 0.25;
-
550 float seed_tilt = 50;
-
551 subdivisions = 6;
-
552
-
553 std::string seed_texture_file = "plugins/plantarchitecture/assets/textures/SorghumSeed.jpeg";
-
554 RGBcolor stem_color(0.45,0.55,0.42);
-
555
-
556 std::vector<uint> UUIDs;
-
557
-
558 panicle_height -= 0.8*height_seed;
-
559
-
560 std::vector<vec3> nodes_panicle;
-
561 std::vector<float> radius_panicle;
-
562
-
563 for (int n = 0; n < subdivisions ; n++) {
-
564 float x = 0;
-
565 float y = 0;
-
566 float z;
-
567 if( n==0 ){
-
568 z = 0.5f*height_seed/float(subdivisions-1);
-
569 }else if( n==subdivisions-1 ){
-
570 z = (subdivisions-1.5f)*height_seed/float(subdivisions-1);
-
571 }else{
-
572 z = n*height_seed/float(subdivisions-1);
-
573 }
-
574
-
575 float angle = n * M_PI /float(subdivisions-1);
-
576 float dr = 0.5f * width_seed * sin(angle);
+
546 // Check for collisions with existing grapes
+
547 bool collision = false;
+
548 for (const auto& grape : grapes) {
+
549 if (spheres_overlap(new_center, grape_radius, grape.first, grape.second)) {
+
550 collision = true;
+
551 break;
+
552 }
+
553 }
+
554
+
555 // If no collision, place the grape
+
556 if (!collision) {
+
557 grapes.push_back({new_center, grape_radius});
+
558 placed = true;
+
559 }
+
560
+
561 attempts++;
+
562 }
+
563
+
564 }
+
565
+
566 std::vector<uint> UUIDs;
+
567 for (const auto& grape : grapes) {
+
568 std::vector<uint> UUIDs_tmp = context_ptr->addSphere( 10, grape.first, grape.second, "../../../plugins/plantarchitecture/assets/textures/GrapeBerry.jpg" );
+
569 UUIDs.insert(UUIDs.end(), UUIDs_tmp.begin(), UUIDs_tmp.end());
+
570 }
+
571
+
572 context_ptr->rotatePrimitive( UUIDs, -0.5*M_PI, "y");
+
573
+
574 uint objID = context_ptr->addPolymeshObject( UUIDs );
+
575 return objID;
+
576}
577
-
578 nodes_panicle.push_back(make_vec3(x, y, z));
-
579 radius_panicle.push_back(dr);
-
580
-
581 }
-
582
-
583 std::vector<uint> UUIDs_seed_ptype = context_ptr->addTube( subdivisions, nodes_panicle, radius_panicle,seed_texture_file.c_str());
-
584
-
585 int Ntheta = ceil( 6.f*panicle_height/height_seed );
-
586 int Nphi = ceil( 2.f*M_PI*panicle_width/width_seed);
-
587
-
588 for(int j=0; j < Nphi; j++ ) {
-
589 for (int i = 0; i < Ntheta; i++) {
+
578//uint GrapevineFlowerPrototype( helios::Context* context_ptr, uint subdivisions, bool flower_is_open ){
+
579// std::vector<uint> UUIDs = context_ptr->loadOBJ( "plugins/plantarchitecture/assets/obj/OliveFlower_open.obj", make_vec3(0.0,0,0), 0,nullrotation, RGB::black, "ZUP", true );
+
580// uint objID = context_ptr->addPolymeshObject( UUIDs );
+
581// return objID;
+
582//}
+
583
+
584void GrapevinePhytomerCreationFunction( std::shared_ptr<Phytomer> phytomer, uint shoot_node_index, uint parent_shoot_node_index, uint shoot_max_nodes, float plant_age ) {
+
585
+
586 //blind nodes
+
587 if( shoot_node_index>=2 ){
+
588 phytomer->setFloralBudState( BUD_DEAD );
+
589 }
590
-
591 if( i==0 && j==0 ){
-
592 continue;
-
593 }
-
594
-
595 std::vector<uint> UUIDs_copy = context_ptr->copyPrimitive(UUIDs_seed_ptype);
-
596 context_ptr->scalePrimitive( UUIDs_copy, make_vec3(1,1,1)*context_ptr->randu(0.9f,1.1f));
-
597
-
598 float phi = 2.f * M_PI * float(j + 0.5f*float(i%2)) / float(Nphi);
-
599 float theta = acos(1 - 2 * float(i + float(j)/float(Nphi)) / float(Ntheta));
-
600 float x = sin(theta) * cos(phi);
-
601 float y = sin(theta) * sin(phi);
-
602 float z = 0.5f + 0.5f*cos(theta);
-
603
-
604 x *= 0.5f * panicle_width;
-
605 y *= 0.5f * panicle_width;
-
606 z *= panicle_height;
+
591}
+
592
+
593//void GrapevinePhytomerCallbackFunction( std::shared_ptr<Phytomer> phytomer ){
+
594//
+
595// if( phytomer->isdormant ){
+
596// if( phytomer->shoot_index.x >= phytomer->shoot_index.y-1 ){
+
597// phytomer->setVegetativeBudState( BUD_DORMANT ); //first vegetative buds always break
+
598// }
+
599// if( phytomer->shoot_index.x <= phytomer->shoot_index.y-4 ){
+
600// phytomer->setFloralBudState( BUD_DORMANT ); //first vegetative buds always break
+
601// }
+
602// }
+
603//
+
604//}
+
605
+
606uint PuncturevineLeafPrototype( helios::Context* context_ptr, uint subdivisions, int compound_leaf_index ){
607
-
608 float tilt = - deg2rad(seed_tilt) * sqrtf(1.f - z / panicle_height);
+
608 std::string leaf_texture = "plugins/plantarchitecture/assets/textures/PuncturevineLeaf.png";
609
-
610 context_ptr->rotatePrimitive(UUIDs_copy, tilt, "x");
-
611 context_ptr->rotatePrimitive(UUIDs_copy, phi - 0.5f * M_PI, "z");
-
612
-
613 context_ptr->translatePrimitive(UUIDs_copy, make_vec3(x, y, z));
-
614 UUIDs.insert(UUIDs.end(), UUIDs_copy.begin(), UUIDs_copy.end());
+
610 float leaf_aspect = 0.4; //ratio of leaf width to leaf length
+
611
+
612 float midrib_fold = 0.2; //fraction of folding along midrib (=0 leaf is flat, =1 leaf is completely folded in half)
+
613
+
614 float longitudinal_curvature = -0.1; //curvature factor along x-direction. (+curves upward, -curved downward)
615
-
616 }
-
617 }
-
618
-
619 context_ptr->deletePrimitive(UUIDs_seed_ptype);
-
620
-
621 std::vector<uint> UUIDs_sphere = context_ptr->addSphere( 10, make_vec3(0,0,0.5*panicle_height), 0.5f, seed_texture_file.c_str() );
-
622 context_ptr->scalePrimitiveAboutPoint( UUIDs_sphere, make_vec3(1.9*panicle_width, 1.9*panicle_width, 0.8*panicle_height), make_vec3(0,0,0.5*panicle_height));
-
623 UUIDs.insert(UUIDs.end(), UUIDs_sphere.begin(), UUIDs_sphere.end());
-
624
-
625 context_ptr->rotatePrimitive(UUIDs, 0.5f*M_PI, "y");
-
626 context_ptr->translatePrimitive( UUIDs, make_vec3(-0.2,0,0));
-
627
-
628 uint objID = context_ptr->addPolymeshObject( UUIDs );
-
629 return objID;
-
630
-
631}
-
632
-
633void SorghumPhytomerCreationFunction( std::shared_ptr<Phytomer> phytomer, uint shoot_node_index, uint parent_shoot_node_index, uint shoot_max_nodes, float plant_age ){
-
634
-
635 //set leaf scale based on position along the shoot
-
636 float scale = fmin(1.f, 0.7 + 0.3*float(shoot_node_index)/5.f);
-
637 phytomer->scaleLeafPrototypeScale(scale);
-
638
-
639 //set internode length based on position along the shoot
-
640 phytomer->scaleInternodeMaxLength(scale);
-
641
-
642}
-
643
-
644uint SoybeanLeafPrototype_trifoliate(helios::Context* context_ptr, uint subdivisions, int compound_leaf_index ){
-
645// std::vector<uint> UUIDs;
-
646// UUIDs = context_ptr->loadOBJ( "plugins/plantarchitecture/assets/obj/SoybeanLeaf.obj", make_vec3(0.,0,0), 0, nullrotation, RGB::black, "ZUP", true );
-
647// uint objID = context_ptr->addPolymeshObject( UUIDs );
-
648// return objID;
-
649
-
650 std::string leaf_texture = "plugins/plantarchitecture/assets/textures/SoybeanLeaf.png";
-
651
-
652 float leaf_aspect = 1.0; //ratio of leaf width to leaf length
+
616 float lateral_curvature = 0.4; //curvature factor along y-direction. (+curves upward, -curved downward)
+
617
+
618 return buildGenericLeafPrototype(context_ptr, subdivisions, leaf_texture, leaf_aspect, midrib_fold, longitudinal_curvature, lateral_curvature, 0, 0, 0, false);
+
619
+
620}
+
621
+
622uint OliveLeafPrototype( helios::Context* context_ptr, uint subdivisions, int compound_leaf_index ){
+
623
+
624// std::string leaf_texture = "plugins/plantarchitecture/assets/textures/OliveLeaf.png";
+
625//
+
626// float leaf_aspect = 0.4; //ratio of leaf width to leaf length
+
627//
+
628// float midrib_fold = 0.; //fraction of folding along midrib (=0 leaf is flat, =1 leaf is completely folded in half)
+
629//
+
630// float longitudinal_curvature = 0.05; //curvature factor along x-direction. (+curves upward, -curved downward)
+
631//
+
632// float lateral_curvature = 0.1; //curvature factor along y-direction. (+curves upward, -curved downward)
+
633//
+
634// uint objID = buildGenericLeafPrototype(context_ptr, subdivisions, leaf_texture, leaf_aspect, midrib_fold, longitudinal_curvature, lateral_curvature, 0, 0, 0, false);
+
635
+
636 std::vector<uint> UUIDs_upper = context_ptr->addTile(make_vec3(0.5,0,0), make_vec2(1,0.2), nullrotation, make_int2(subdivisions,subdivisions), "plugins/plantarchitecture/assets/textures/OliveLeaf_upper.png");
+
637 std::vector<uint> UUIDs_lower = context_ptr->addTile(make_vec3(0.5,0,-1e-4), make_vec2(1,0.2), nullrotation, make_int2(subdivisions,subdivisions), "plugins/plantarchitecture/assets/textures/OliveLeaf_lower.png");
+
638 context_ptr->rotatePrimitive( UUIDs_lower, M_PI, "x" );
+
639
+
640 UUIDs_upper.insert(UUIDs_upper.end(), UUIDs_lower.begin(), UUIDs_lower.end());
+
641 uint objID = context_ptr->addPolymeshObject( UUIDs_upper );
+
642 return objID;
+
643}
+
644
+
645uint OliveFruitPrototype( helios::Context* context_ptr, uint subdivisions, float time_since_fruit_set ){
+
646 std::vector<uint> UUIDs = context_ptr->loadOBJ( "plugins/plantarchitecture/assets/obj/OliveFruit.obj", make_vec3(0.,0,0), 0,nullrotation, RGB::black, "ZUP", true );
+
647 uint objID = context_ptr->addPolymeshObject( UUIDs );
+
648 std::vector<uint> UUIDs_fruit = context_ptr->filterPrimitivesByData( context_ptr->getObjectPrimitiveUUIDs(objID), "object_label", "fruit");
+
649// context_ptr->setPrimitiveColor( UUIDs_fruit, make_RGBcolor(0.3,0.15,0.2)); //purple
+
650 context_ptr->setPrimitiveColor( UUIDs_fruit, make_RGBcolor(0.65,0.7,0.4)); //green
+
651 return objID;
+
652}
653
-
654 float midrib_fold = 0.1; //fraction of folding along midrib (=0 leaf is flat, =1 leaf is completely folded in half)
-
655
-
656 float longitudinal_curvature = context_ptr->randu(-0.2f,0.f); //curvature factor along x-direction. (+curves upward, -curved downward)
-
657
-
658 float lateral_curvature = -0.25; //curvature factor along y-direction. (+curves upward, -curved downward)
+
654uint OliveFlowerPrototype( helios::Context* context_ptr, uint subdivisions, bool flower_is_open ){
+
655 std::vector<uint> UUIDs = context_ptr->loadOBJ( "plugins/plantarchitecture/assets/obj/OliveFlower_open.obj", make_vec3(0.0,0,0), 0,nullrotation, RGB::black, "ZUP", true );
+
656 uint objID = context_ptr->addPolymeshObject( UUIDs );
+
657 return objID;
+
658}
659
-
660 return buildGenericLeafPrototype(context_ptr, subdivisions, leaf_texture, leaf_aspect, midrib_fold, longitudinal_curvature, lateral_curvature, 0, 0, 0, true);
+
660void OlivePhytomerCreationFunction( std::shared_ptr<Phytomer> phytomer, uint shoot_node_index, uint parent_shoot_node_index, uint shoot_max_nodes, float plant_age ) {
661
662}
663
-
664uint SoybeanLeafPrototype_unifoliate(helios::Context* context_ptr, uint subdivisions, int compound_leaf_index ){
-
665 return SoybeanLeafPrototype_trifoliate(context_ptr, subdivisions, compound_leaf_index ); //\todo Add separate model for unifoliate leaves
-
666}
-
667
-
668uint SoybeanFruitPrototype( helios::Context* context_ptr, uint subdivisions, float time_since_fruit_set ){
-
669 std::vector<uint> UUIDs = context_ptr->loadOBJ( "plugins/plantarchitecture/assets/obj/SoybeanPod.obj", make_vec3(0.,0,0), 0,nullrotation, RGB::black, "ZUP", true );
-
670 uint objID = context_ptr->addPolymeshObject( UUIDs );
-
671 return objID;
+
664void OlivePhytomerCallbackFunction( std::shared_ptr<Phytomer> phytomer ){
+
665
+
666 if( phytomer->isdormant ){
+
667 if( phytomer->shoot_index.x < phytomer->shoot_index.y-8 ){
+
668 phytomer->setFloralBudState( BUD_DEAD );
+
669 }
+
670 }
+
671
672}
673
-
674uint SoybeanFlowerPrototype( helios::Context* context_ptr, uint subdivisions, bool flower_is_open ){
-
675 std::vector<uint> UUIDs;
-
676 if( flower_is_open ){
-
677 UUIDs = context_ptr->loadOBJ( "plugins/plantarchitecture/assets/obj/SoybeanFlower_open_white.obj", make_vec3(0.0,0,0), 0,nullrotation, RGB::black, "ZUP", true );
-
678 }else{
-
679 UUIDs = context_ptr->loadOBJ( "plugins/plantarchitecture/assets/obj/BeanFlower_closed_white.obj", make_vec3(0.0,0,0), 0,nullrotation, RGB::black, "ZUP", true );
-
680 }
-
681 uint objID = context_ptr->addPolymeshObject( UUIDs );
-
682 return objID;
-
683}
-
684
-
685void SoybeanPhytomerCreationFunction( std::shared_ptr<Phytomer> phytomer, uint shoot_node_index, uint parent_shoot_node_index, uint shoot_max_nodes, float plant_age ){
-
686
-
687 if( shoot_node_index>5 || phytomer->rank>1 ) {
-
688 phytomer->setVegetativeBudState(BUD_DEAD);
-
689 }else{
-
690 phytomer->setFloralBudState(BUD_DEAD);
-
691 }
-
692
-
693 //set leaf and internode scale based on position along the shoot
-
694 float leaf_scale = fmin(1.f, 0.2 + 0.8 * plant_age / 15.f);
-
695 phytomer->scaleLeafPrototypeScale(leaf_scale);
-
696
-
697 //set internode length based on position along the shoot
-
698 float inode_scale = fmin(1.f, 0.1 + 0.9 * plant_age / 15.f);
-
699 phytomer->scaleInternodeMaxLength(inode_scale);
-
700
-
701}
-
702
-
703uint StrawberryLeafPrototype( helios::Context* context_ptr, uint subdivisions, int compound_leaf_index ){
-
704
-
705 std::string leaf_texture = "plugins/plantarchitecture/assets/textures/StrawberryLeaf.png";
-
706
-
707 float leaf_aspect = 1.0; //ratio of leaf width to leaf length
-
708
-
709 float midrib_fold_fraction = 0.2;
-
710
-
711 float longitudinal_curvature = -0.01;
-
712 float lateral_curvature = -0.2;
+
674uint PistachioLeafPrototype( helios::Context* context_ptr, uint subdivisions, int compound_leaf_index ){
+
675
+
676 std::string leaf_texture = "plugins/plantarchitecture/assets/textures/PistachioLeaf.png";
+
677
+
678 float leaf_aspect = 0.6; //ratio of leaf width to leaf length
+
679
+
680 float midrib_fold = 0.; //fraction of folding along midrib (=0 leaf is flat, =1 leaf is completely folded in half)
+
681
+
682 float longitudinal_curvature = context_ptr->randu(-0.4f,0.4f); //curvature factor along x-direction. (+curves upward, -curved downward)
+
683
+
684 float lateral_curvature = 0.; //curvature factor along y-direction. (+curves upward, -curved downward)
+
685
+
686 float wave_period = 0.3f; //period factor of leaf waves
+
687 float wave_amplitude = 0.1f; // amplitude of leaf waves
+
688
+
689 uint objID = buildGenericLeafPrototype(context_ptr, subdivisions, leaf_texture, leaf_aspect, midrib_fold, longitudinal_curvature, lateral_curvature, 0, wave_period, wave_amplitude, false);
+
690
+
691 return objID;
+
692}
+
693
+
694uint PistachioFruitPrototype( helios::Context* context_ptr, uint subdivisions, float time_since_fruit_set ){
+
695 std::vector<uint> UUIDs = context_ptr->loadOBJ( "plugins/plantarchitecture/assets/obj/PistachioNut.obj", make_vec3(0.,0,0), 0,nullrotation, RGB::black, "ZUP", true );
+
696 uint objID = context_ptr->addPolymeshObject( UUIDs );
+
697 return objID;
+
698}
+
699
+
700uint PistachioFlowerPrototype( helios::Context* context_ptr, uint subdivisions, bool flower_is_open ){
+
701 std::vector<uint> UUIDs = context_ptr->loadOBJ( "plugins/plantarchitecture/assets/obj/OliveFlower_open.obj", make_vec3(0.0,0,0), 0,nullrotation, RGB::black, "ZUP", true );
+
702 uint objID = context_ptr->addPolymeshObject( UUIDs );
+
703 return objID;
+
704}
+
705
+
706void PistachioPhytomerCreationFunction( std::shared_ptr<Phytomer> phytomer, uint shoot_node_index, uint parent_shoot_node_index, uint shoot_max_nodes, float plant_age ) {
+
707
+
708 //blind nodes
+
709 if( shoot_node_index<2 ){
+
710 phytomer->setVegetativeBudState( BUD_DEAD );
+
711 phytomer->setFloralBudState( BUD_DEAD );
+
712 }
713
-
714 //parameters for leaf wave/wrinkles
-
715 float wave_period = 0.3f; //period factor of leaf waves
-
716 float wave_amplitude = 0.01f; // amplitude of leaf waves
+
714}
+
715
+
716void PistachioPhytomerCallbackFunction( std::shared_ptr<Phytomer> phytomer ){
717
-
718 return buildGenericLeafPrototype(context_ptr, subdivisions, leaf_texture, leaf_aspect, midrib_fold_fraction, longitudinal_curvature, lateral_curvature, 0, wave_period, wave_amplitude, true);
-
719
-
720}
-
721
-
722uint StrawberryFlowerPrototype( helios::Context* context_ptr, uint subdivisions, bool flower_is_open ){
-
723 std::vector<uint> UUIDs = context_ptr->loadOBJ( "plugins/plantarchitecture/assets/obj/StrawberryFlower.obj", make_vec3(0.0,0,0), 0,nullrotation, RGB::black, "ZUP", true );
-
724 uint objID = context_ptr->addPolymeshObject( UUIDs );
-
725 return objID;
-
726}
-
727
-
728uint StrawberryFruitPrototype( helios::Context* context_ptr, uint subdivisions, float time_since_fruit_set ){
-
729 std::vector<uint> UUIDs = context_ptr->loadOBJ( "plugins/plantarchitecture/assets/obj/StrawberryFruit.obj", make_vec3(0.,0,0), 0,nullrotation, RGB::black, "ZUP", true );
-
730 uint objID = context_ptr->addPolymeshObject( UUIDs );
-
731 return objID;
-
732}
-
733
-
734uint SugarbeetLeafPrototype( helios::Context* context_ptr, uint subdivisions, int compound_leaf_index ){
-
735
-
736 std::string leaf_texture = "plugins/plantarchitecture/assets/textures/SugarbeetLeaf.png";
+
718 if( phytomer->isdormant ){
+
719 if( phytomer->shoot_index.x >= phytomer->shoot_index.y-1 ){
+
720 phytomer->setVegetativeBudState( BUD_DORMANT ); //first vegetative buds always break
+
721 }
+
722 if( phytomer->shoot_index.x <= phytomer->shoot_index.y-4 ){
+
723 phytomer->setFloralBudState( BUD_DORMANT ); //first vegetative buds always break
+
724 }
+
725 }
+
726
+
727}
+
728
+
729uint PuncturevineFlowerPrototype( helios::Context* context_ptr, uint subdivisions, bool flower_is_open ){
+
730 std::vector<uint> UUIDs = context_ptr->loadOBJ( "plugins/plantarchitecture/assets/obj/PuncturevineFlower.obj", make_vec3(0.0,0,0), 0,nullrotation, RGB::black, "ZUP", true );
+
731 uint objID = context_ptr->addPolymeshObject( UUIDs );
+
732 return objID;
+
733}
+
734
+
735uint RedbudLeafPrototype( helios::Context* context_ptr, uint subdivisions, int compound_leaf_index ){
+
736 std::string leaf_texture = "plugins/plantarchitecture/assets/textures/RedbudLeaf.png";
737
-
738 float leaf_aspect = 0.4; //ratio of leaf width to leaf length
+
738 float leaf_aspect = 1.0; //ratio of leaf width to leaf length
739
-
740 float midrib_fold = 0.1; //fraction of folding along midrib (=0 leaf is flat, =1 leaf is completely folded in half)
+
740 float midrib_fold = 0.2; //fraction of folding along midrib (=0 leaf is flat, =1 leaf is completely folded in half)
741
-
742 float longitudinal_curvature = -0.2; //curvature factor along x-direction. (+curves upward, -curved downward)
+
742 float longitudinal_curvature = -0.15; //curvature factor along x-direction. (+curves upward, -curved downward)
743
-
744 float lateral_curvature = 0.4; //curvature factor along y-direction. (+curves upward, -curved downward)
+
744 float lateral_curvature = -0.1; //curvature factor along y-direction. (+curves upward, -curved downward)
745
-
746 float petiole_roll = 0.75; //add a small radius roll at the based of the leaf to better mate with the petiole. Value is the magnitude of the roll (+rolls upward, - rolls downward)
-
747
-
748 //parameters for leaf wave/wrinkles
-
749 float wave_period = context_ptr->randu( 0.08f, 0.15f); //period factor of leaf waves
-
750 float wave_amplitude = context_ptr->randu(0.02f,0.04f); // amplitude of leaf waves
-
751
-
752 return buildGenericLeafPrototype(context_ptr, subdivisions, leaf_texture, leaf_aspect, midrib_fold, longitudinal_curvature, lateral_curvature, petiole_roll, wave_period, wave_amplitude, false);
-
753
+
746 //parameters for leaf wave/wrinkles
+
747 float wave_period = 0.3f; //period factor of leaf waves
+
748 float wave_amplitude = 0.025f; // amplitude of leaf waves
+
749
+
750 uint objID = buildGenericLeafPrototype(context_ptr, subdivisions, leaf_texture, leaf_aspect, midrib_fold, longitudinal_curvature, lateral_curvature, 0, wave_period, wave_amplitude, false);
+
751 context_ptr->translateObject( objID, make_vec3(-0.3,0,0) );
+
752
+
753 return objID;
754}
755
-
756uint TomatoLeafPrototype( helios::Context* context_ptr, uint subdivisions, int compound_leaf_index ){
-
757// std::vector<uint> UUIDs = context_ptr->loadOBJ( "plugins/plantarchitecture/assets/obj/TomatoLeaf.obj", make_vec3(0.,0,0), 0, nullrotation, RGB::black, "ZUP", true );
-
758// uint objID = context_ptr->addPolymeshObject( UUIDs );
-
759// return objID;
+
756uint RedbudFlowerPrototype( helios::Context* context_ptr, uint subdivisions, bool flower_is_open ){
+
757 std::vector<uint> UUIDs = context_ptr->loadOBJ( "plugins/plantarchitecture/assets/obj/RedbudFlower_open.obj", make_vec3(0.0,0,0), 0,nullrotation, RGB::black, "ZUP", true );
+
758 return context_ptr->addPolymeshObject( UUIDs );
+
759}
760
-
761 std::string leaf_texture = "plugins/plantarchitecture/assets/textures/TomatoLeaf_centered.png";
-
762
-
763 float leaf_aspect = 0.5; //ratio of leaf width to leaf length
-
764
-
765 float midrib_fold = 0.1; //fraction of folding along midrib (=0 leaf is flat, =1 leaf is completely folded in half)
-
766
-
767 float longitudinal_curvature = context_ptr->randu(-0.45f,-0.2f); //curvature factor along x-direction. (+curves upward, -curved downward)
-
768
-
769 float lateral_curvature = -0.3; //curvature factor along y-direction. (+curves upward, -curved downward)
-
770
-
771 //parameters for leaf wave/wrinkles
-
772 float wave_period = 0.35f; //period factor of leaf waves
-
773 float wave_amplitude = 0.08f; // amplitude of leaf waves
-
774
-
775 return buildGenericLeafPrototype(context_ptr, subdivisions, leaf_texture, leaf_aspect, midrib_fold, longitudinal_curvature, lateral_curvature, 0, wave_period, wave_amplitude, false);
-
776
-
777}
-
778
-
779uint TomatoFruitPrototype( helios::Context* context_ptr, uint subdivisions, float time_since_fruit_set ){
-
780 std::vector<uint> UUIDs = context_ptr->loadOBJ( "plugins/plantarchitecture/assets/obj/TomatoFruit.obj", make_vec3(0.,0,0), 0.75,nullrotation, RGB::black, "ZUP", true );
-
781 uint objID = context_ptr->addPolymeshObject( UUIDs );
-
782 return objID;
-
783}
-
784
-
785uint TomatoFlowerPrototype( helios::Context* context_ptr, uint subdivisions, bool flower_is_open ){
-
786 std::vector<uint> UUIDs = context_ptr->loadOBJ( "plugins/plantarchitecture/assets/obj/TomatoFlower.obj", make_vec3(0.0,0,0), 0.75,nullrotation, RGB::black, "ZUP", true );
-
787 uint objID = context_ptr->addPolymeshObject( UUIDs );
-
788 return objID;
-
789}
-
790
-
791void TomatoPhytomerCreationFunction( std::shared_ptr<Phytomer> phytomer, uint shoot_node_index, uint parent_shoot_node_index, uint shoot_max_nodes, float plant_age ){
-
792
-
793 if( shoot_node_index>5 || phytomer->rank>1 ) {
-
794 phytomer->setVegetativeBudState(BUD_DEAD);
-
795 }
-
796 if( shoot_node_index<8 && phytomer->rank==0 ){
-
797 phytomer->setFloralBudState(BUD_DEAD);
-
798 }
+
761uint RedbudFruitPrototype( helios::Context* context_ptr, uint subdivisions, float time_since_fruit_set ){
+
762 std::vector<uint> UUIDs = context_ptr->loadOBJ( "plugins/plantarchitecture/assets/obj/RedbudPod.obj", make_vec3(0.,0,0), 0,nullrotation, RGB::black, "ZUP", true );
+
763 return context_ptr->addPolymeshObject( UUIDs );
+
764}
+
765
+
766void RedbudPhytomerCreationFunction( std::shared_ptr<Phytomer> phytomer, uint shoot_node_index, uint parent_shoot_node_index, uint shoot_max_nodes, float plant_age ){
+
767
+
768}
+
769
+
770void RedbudPhytomerCallbackFunction( std::shared_ptr<Phytomer> phytomer ){
+
771
+
772 int Nchild_shoots = randu(0,3);
+
773
+
774 if( phytomer->isdormant ){
+
775 if( phytomer->rank<=1 ){
+
776 Nchild_shoots = std::max(2,Nchild_shoots);
+
777 }
+
778 if( phytomer->shoot_index.x < phytomer->shoot_index.y-Nchild_shoots ){
+
779 phytomer->setVegetativeBudState( BUD_DEAD );
+
780 }
+
781 else{
+
782 phytomer->setFloralBudState(BUD_DEAD);
+
783 }
+
784 }
+
785
+
786}
+
787
+
788uint RomaineLettuceLeafPrototype( helios::Context* context_ptr, uint subdivisions, int compound_leaf_index ){
+
789
+
790 std::string leaf_texture = "plugins/plantarchitecture/assets/textures/RomaineLettuceLeaf.png";
+
791
+
792// float leaf_aspect = 0.65; //ratio of leaf width to leaf length
+
793 float leaf_aspect = 0.85; //ratio of leaf width to leaf length
+
794
+
795 float midrib_fold = 0.2; //fraction of folding along midrib (=0 leaf is flat, =1 leaf is completely folded in half)
+
796
+
797// float longitudinal_curvature = context_ptr->randu(-0.05f,0.2f); //curvature factor along x-direction. (+curves upward, -curved downward)
+
798 float longitudinal_curvature = context_ptr->randu(-0.2f,0.05f); //curvature factor along x-direction. (+curves upward, -curved downward)
799
-
800 //set leaf and internode scale based on position along the shoot
-
801 float leaf_scale = fmin(1.f, 0.5 + 0.5 * plant_age / 10.f);
-
802 phytomer->scaleLeafPrototypeScale(leaf_scale);
+
800 float lateral_curvature = -0.4; //curvature factor along y-direction. (+curves upward, -curved downward)
+
801
+
802 float petiole_roll = 0; //add a small radius roll at the based of the leaf to better mate with the petiole. Value is the magnitude of the roll (+rolls upward, - rolls downward)
803
-
804 //set internode length based on position along the shoot
-
805 float inode_scale = fmin(1.f, 0.7 + 0.3 * plant_age / 10.f);
-
806 phytomer->scaleInternodeMaxLength(inode_scale);
-
807
-
808}
+
804 //parameters for leaf wave/wrinkles
+
805// float wave_period = context_ptr->randu( 0.1f, 0.2f); //period factor of leaf waves
+
806 float wave_period = context_ptr->randu( 0.15f, 0.25f); //period factor of leaf waves
+
807// float wave_amplitude = context_ptr->randu(0.03f,0.075f); // amplitude of leaf waves
+
808 float wave_amplitude = context_ptr->randu(0.05f,0.1f); // amplitude of leaf waves
809
-
810uint WheatLeafPrototype( helios::Context* context_ptr, uint subdivisions, int compound_leaf_index ){
+
810 return buildGenericLeafPrototype(context_ptr, subdivisions, leaf_texture, leaf_aspect, midrib_fold, longitudinal_curvature, lateral_curvature, petiole_roll, wave_period, wave_amplitude, false);
811
-
812 std::string leaf_texture = "plugins/plantarchitecture/assets/textures/SorghumLeaf.png";
+
812}
813
-
814 float leaf_aspect = 0.2; //ratio of leaf width to leaf length
+
814void RomaineLettucePhytomerCreationFunction( std::shared_ptr<Phytomer> phytomer, uint shoot_node_index, uint parent_shoot_node_index, uint shoot_max_nodes, float plant_age ){
815
-
816 float midrib_fold_fraction = 0.3;
+
816 float fact = float(shoot_max_nodes-shoot_node_index)/float(shoot_max_nodes);
817
-
818 float longitudinal_curvature = context_ptr->randu(-2.2f,-1.5f);
-
819 float lateral_curvature = -0.3;
-
820
-
821 float petiole_roll = 0.04f;
-
822
-
823 //parameters for leaf wave/wrinkles
-
824 float wave_period = 0.1f; //period factor of leaf waves
-
825 float wave_amplitude = 0.05f; // amplitude of leaf waves
+
818 //set leaf scale based on position along the shoot
+
819// float scale = fmin(1.f, 1 + 0.1*fact);
+
820// phytomer->scaleLeafPrototypeScale(scale);
+
821
+
822// phytomer->rotateLeaf( 0, 0, make_AxisRotation(-deg2rad(15)*fact, 0, 0));
+
823 phytomer->rotateLeaf( 0, 0, make_AxisRotation(-deg2rad(60)*fact, 0, 0));
+
824
+
825}
826
-
827 return buildGenericLeafPrototype(context_ptr, subdivisions, leaf_texture, leaf_aspect, midrib_fold_fraction, longitudinal_curvature, lateral_curvature, petiole_roll, wave_period, wave_amplitude, false);
+
827uint SorghumLeafPrototype( helios::Context* context_ptr, uint subdivisions, int compound_leaf_index ){
828
-
829}
+
829 std::string leaf_texture = "plugins/plantarchitecture/assets/textures/SorghumLeaf.png";
830
-
831uint WheatSpikePrototype( helios::Context* context_ptr, uint subdivisions, float time_since_fruit_set ){
-
832 std::vector<uint> UUIDs = context_ptr->loadOBJ( "plugins/plantarchitecture/assets/obj/WheatSpike.obj", make_vec3(0.,0,0), 0,nullrotation, RGB::black, "ZUP", true );
-
833 uint objID = context_ptr->addPolymeshObject( UUIDs );
-
834 return objID;
-
835}
-
836
-
837void WheatPhytomerCreationFunction( std::shared_ptr<Phytomer> phytomer, uint shoot_node_index, uint parent_shoot_node_index, uint shoot_max_nodes, float plant_age ){
-
838
-
839 //set leaf scale based on position along the shoot
-
840 float scale = fmin(1.f, 0.7 + 0.3*float(shoot_node_index)/5.f);
-
841 phytomer->scaleLeafPrototypeScale(scale);
-
842
-
843 //set internode length based on position along the shoot
-
844 phytomer->scaleInternodeMaxLength(scale);
+
831 float leaf_aspect = 0.2; //ratio of leaf width to leaf length
+
832
+
833 float midrib_fold_fraction = 0.3;
+
834
+
835 float longitudinal_curvature = context_ptr->randu(-1.2f,-0.8f);
+
836 float lateral_curvature = -0.3;
+
837
+
838 float petiole_roll = 0.04f;
+
839
+
840 //parameters for leaf wave/wrinkles
+
841 float wave_period = 0.1f; //period factor of leaf waves
+
842 float wave_amplitude = 0.1f; // amplitude of leaf waves
+
843
+
844 return buildGenericLeafPrototype(context_ptr, subdivisions, leaf_texture, leaf_aspect, midrib_fold_fraction, longitudinal_curvature, lateral_curvature, petiole_roll, wave_period, wave_amplitude, false);
845
846}
+
847
+
848uint SorghumPaniclePrototype( helios::Context* context_ptr, uint subdivisions, float time_since_fruit_set ){
+
849
+
850 if( subdivisions<=1 ){
+
851 subdivisions = 3;
+
852 }
+
853
+
854 float panicle_height = 1;
+
855 float panicle_width = 0.08;
+
856 float width_seed = 0.08;
+
857 float height_seed = 0.25;
+
858 float seed_tilt = 50;
+
859 subdivisions = 6;
+
860
+
861 std::string seed_texture_file = "plugins/plantarchitecture/assets/textures/SorghumSeed.jpeg";
+
862 RGBcolor stem_color(0.45,0.55,0.42);
+
863
+
864 std::vector<uint> UUIDs;
+
865
+
866 panicle_height -= 0.8*height_seed;
+
867
+
868 std::vector<vec3> nodes_panicle;
+
869 std::vector<float> radius_panicle;
+
870
+
871 for (int n = 0; n < subdivisions ; n++) {
+
872 float x = 0;
+
873 float y = 0;
+
874 float z;
+
875 if( n==0 ){
+
876 z = 0.5f*height_seed/float(subdivisions-1);
+
877 }else if( n==subdivisions-1 ){
+
878 z = (subdivisions-1.5f)*height_seed/float(subdivisions-1);
+
879 }else{
+
880 z = n*height_seed/float(subdivisions-1);
+
881 }
+
882
+
883 float angle = float(n) * M_PI /float(subdivisions-1);
+
884 float dr = std::fmax(0.f, 0.5f * width_seed * sin(angle));
+
885
+
886 nodes_panicle.push_back(make_vec3(x, y, z));
+
887 radius_panicle.push_back(dr);
+
888
+
889 }
+
890
+
891 std::vector<uint> UUIDs_seed_ptype = context_ptr->addTube( subdivisions, nodes_panicle, radius_panicle,seed_texture_file.c_str());
+
892
+
893 int Ntheta = ceil( 6.f*panicle_height/height_seed );
+
894 int Nphi = ceil( 2.f*M_PI*panicle_width/width_seed);
+
895
+
896 for(int j=0; j < Nphi; j++ ) {
+
897 for (int i = 0; i < Ntheta; i++) {
+
898
+
899 if( i==0 && j==0 ){
+
900 continue;
+
901 }
+
902
+
903 std::vector<uint> UUIDs_copy = context_ptr->copyPrimitive(UUIDs_seed_ptype);
+
904 context_ptr->scalePrimitive( UUIDs_copy, make_vec3(1,1,1)*context_ptr->randu(0.9f,1.1f));
+
905
+
906 float phi = 2.f * M_PI * float(j + 0.5f*float(i%2)) / float(Nphi);
+
907 float theta = acos(1 - 2 * float(i + float(j)/float(Nphi)) / float(Ntheta));
+
908 float x = sin(theta) * cos(phi);
+
909 float y = sin(theta) * sin(phi);
+
910 float z = 0.5f + 0.5f*cos(theta);
+
911
+
912 x *= 0.5f * panicle_width;
+
913 y *= 0.5f * panicle_width;
+
914 z *= panicle_height;
+
915
+
916 float tilt = - deg2rad(seed_tilt) * sqrtf(1.f - z / panicle_height);
+
917
+
918 context_ptr->rotatePrimitive(UUIDs_copy, tilt, "x");
+
919 context_ptr->rotatePrimitive(UUIDs_copy, phi - 0.5f * M_PI, "z");
+
920
+
921 context_ptr->translatePrimitive(UUIDs_copy, make_vec3(x, y, z));
+
922 UUIDs.insert(UUIDs.end(), UUIDs_copy.begin(), UUIDs_copy.end());
+
923
+
924 }
+
925 }
+
926
+
927 context_ptr->deletePrimitive(UUIDs_seed_ptype);
+
928
+
929 std::vector<uint> UUIDs_sphere = context_ptr->addSphere( 10, make_vec3(0,0,0.5*panicle_height), 0.5f, seed_texture_file.c_str() );
+
930 context_ptr->scalePrimitiveAboutPoint( UUIDs_sphere, make_vec3(1.9*panicle_width, 1.9*panicle_width, 0.8*panicle_height), make_vec3(0,0,0.5*panicle_height));
+
931 UUIDs.insert(UUIDs.end(), UUIDs_sphere.begin(), UUIDs_sphere.end());
+
932
+
933 context_ptr->rotatePrimitive(UUIDs, 0.5f*M_PI, "y");
+
934 context_ptr->translatePrimitive( UUIDs, make_vec3(-0.2,0,0));
+
935
+
936 uint objID = context_ptr->addPolymeshObject( UUIDs );
+
937 return objID;
+
938
+
939}
+
940
+
941void SorghumPhytomerCreationFunction( std::shared_ptr<Phytomer> phytomer, uint shoot_node_index, uint parent_shoot_node_index, uint shoot_max_nodes, float plant_age ){
+
942
+
943 //set leaf scale based on position along the shoot
+
944 float scale = fmin(1.f, 0.7 + 0.3*float(shoot_node_index)/5.f);
+
945 phytomer->scaleLeafPrototypeScale(scale);
+
946
+
947 //set internode length based on position along the shoot
+
948 phytomer->scaleInternodeMaxLength(scale);
+
949
+
950}
+
951
+
952uint SoybeanLeafPrototype_trifoliate(helios::Context* context_ptr, uint subdivisions, int compound_leaf_index ){
+
953// std::vector<uint> UUIDs;
+
954// UUIDs = context_ptr->loadOBJ( "plugins/plantarchitecture/assets/obj/SoybeanLeaf.obj", make_vec3(0.,0,0), 0, nullrotation, RGB::black, "ZUP", true );
+
955// uint objID = context_ptr->addPolymeshObject( UUIDs );
+
956// return objID;
+
957
+
958 std::string leaf_texture = "plugins/plantarchitecture/assets/textures/SoybeanLeaf.png";
+
959
+
960 float leaf_aspect = 1.0; //ratio of leaf width to leaf length
+
961
+
962 float midrib_fold = 0.1; //fraction of folding along midrib (=0 leaf is flat, =1 leaf is completely folded in half)
+
963
+
964 float longitudinal_curvature = context_ptr->randu(-0.2f,0.f); //curvature factor along x-direction. (+curves upward, -curved downward)
+
965
+
966 float lateral_curvature = -0.25; //curvature factor along y-direction. (+curves upward, -curved downward)
+
967
+
968 return buildGenericLeafPrototype(context_ptr, subdivisions, leaf_texture, leaf_aspect, midrib_fold, longitudinal_curvature, lateral_curvature, 0, 0, 0, true);
+
969
+
970}
+
971
+
972uint SoybeanLeafPrototype_unifoliate(helios::Context* context_ptr, uint subdivisions, int compound_leaf_index ){
+
973 return SoybeanLeafPrototype_trifoliate(context_ptr, subdivisions, compound_leaf_index ); //\todo Add separate model for unifoliate leaves
+
974}
+
975
+
976uint SoybeanFruitPrototype( helios::Context* context_ptr, uint subdivisions, float time_since_fruit_set ){
+
977 std::vector<uint> UUIDs = context_ptr->loadOBJ( "plugins/plantarchitecture/assets/obj/SoybeanPod.obj", make_vec3(0.,0,0), 0,nullrotation, RGB::black, "ZUP", true );
+
978 uint objID = context_ptr->addPolymeshObject( UUIDs );
+
979 return objID;
+
980}
+
981
+
982uint SoybeanFlowerPrototype( helios::Context* context_ptr, uint subdivisions, bool flower_is_open ){
+
983 std::vector<uint> UUIDs;
+
984 if( flower_is_open ){
+
985 UUIDs = context_ptr->loadOBJ( "plugins/plantarchitecture/assets/obj/SoybeanFlower_open_white.obj", make_vec3(0.0,0,0), 0,nullrotation, RGB::black, "ZUP", true );
+
986 }else{
+
987 UUIDs = context_ptr->loadOBJ( "plugins/plantarchitecture/assets/obj/BeanFlower_closed_white.obj", make_vec3(0.0,0,0), 0,nullrotation, RGB::black, "ZUP", true );
+
988 }
+
989 uint objID = context_ptr->addPolymeshObject( UUIDs );
+
990 return objID;
+
991}
+
992
+
993void SoybeanPhytomerCreationFunction( std::shared_ptr<Phytomer> phytomer, uint shoot_node_index, uint parent_shoot_node_index, uint shoot_max_nodes, float plant_age ){
+
994
+
995 if( shoot_node_index>5 || phytomer->rank>1 ) {
+
996 phytomer->setVegetativeBudState(BUD_DEAD);
+
997 }else{
+
998 phytomer->setFloralBudState(BUD_DEAD);
+
999 }
+
1000
+
1001 //set leaf and internode scale based on position along the shoot
+
1002 float leaf_scale = fmin(1.f, 0.2 + 0.8 * plant_age / 15.f);
+
1003 phytomer->scaleLeafPrototypeScale(leaf_scale);
+
1004
+
1005 //set internode length based on position along the shoot
+
1006 float inode_scale = fmin(1.f, 0.1 + 0.9 * plant_age / 15.f);
+
1007 phytomer->scaleInternodeMaxLength(inode_scale);
+
1008
+
1009}
+
1010
+
1011uint StrawberryLeafPrototype( helios::Context* context_ptr, uint subdivisions, int compound_leaf_index ){
+
1012
+
1013 std::string leaf_texture = "plugins/plantarchitecture/assets/textures/StrawberryLeaf.png";
+
1014
+
1015 float leaf_aspect = 1.0; //ratio of leaf width to leaf length
+
1016
+
1017 float midrib_fold_fraction = 0.2;
+
1018
+
1019 float longitudinal_curvature = -0.01;
+
1020 float lateral_curvature = -0.2;
+
1021
+
1022 //parameters for leaf wave/wrinkles
+
1023 float wave_period = 0.3f; //period factor of leaf waves
+
1024 float wave_amplitude = 0.01f; // amplitude of leaf waves
+
1025
+
1026 return buildGenericLeafPrototype(context_ptr, subdivisions, leaf_texture, leaf_aspect, midrib_fold_fraction, longitudinal_curvature, lateral_curvature, 0, wave_period, wave_amplitude, true);
+
1027
+
1028}
+
1029
+
1030uint StrawberryFlowerPrototype( helios::Context* context_ptr, uint subdivisions, bool flower_is_open ){
+
1031 std::vector<uint> UUIDs = context_ptr->loadOBJ( "plugins/plantarchitecture/assets/obj/StrawberryFlower.obj", make_vec3(0.0,0,0), 0,nullrotation, RGB::black, "ZUP", true );
+
1032 uint objID = context_ptr->addPolymeshObject( UUIDs );
+
1033 return objID;
+
1034}
+
1035
+
1036uint StrawberryFruitPrototype( helios::Context* context_ptr, uint subdivisions, float time_since_fruit_set ){
+
1037 std::vector<uint> UUIDs = context_ptr->loadOBJ( "plugins/plantarchitecture/assets/obj/StrawberryFruit.obj", make_vec3(0.,0,0), 0,nullrotation, RGB::black, "ZUP", true );
+
1038 uint objID = context_ptr->addPolymeshObject( UUIDs );
+
1039 return objID;
+
1040}
+
1041
+
1042uint SugarbeetLeafPrototype( helios::Context* context_ptr, uint subdivisions, int compound_leaf_index ){
+
1043
+
1044 std::string leaf_texture = "plugins/plantarchitecture/assets/textures/SugarbeetLeaf.png";
+
1045
+
1046 float leaf_aspect = 0.4; //ratio of leaf width to leaf length
+
1047
+
1048 float midrib_fold = 0.1; //fraction of folding along midrib (=0 leaf is flat, =1 leaf is completely folded in half)
+
1049
+
1050 float longitudinal_curvature = -0.2; //curvature factor along x-direction. (+curves upward, -curved downward)
+
1051
+
1052 float lateral_curvature = 0.4; //curvature factor along y-direction. (+curves upward, -curved downward)
+
1053
+
1054 float petiole_roll = 0.75; //add a small radius roll at the based of the leaf to better mate with the petiole. Value is the magnitude of the roll (+rolls upward, - rolls downward)
+
1055
+
1056 //parameters for leaf wave/wrinkles
+
1057 float wave_period = context_ptr->randu( 0.08f, 0.15f); //period factor of leaf waves
+
1058 float wave_amplitude = context_ptr->randu(0.02f,0.04f); // amplitude of leaf waves
+
1059
+
1060 return buildGenericLeafPrototype(context_ptr, subdivisions, leaf_texture, leaf_aspect, midrib_fold, longitudinal_curvature, lateral_curvature, petiole_roll, wave_period, wave_amplitude, false);
+
1061
+
1062}
+
1063
+
1064uint TomatoLeafPrototype( helios::Context* context_ptr, uint subdivisions, int compound_leaf_index ){
+
1065// std::vector<uint> UUIDs = context_ptr->loadOBJ( "plugins/plantarchitecture/assets/obj/TomatoLeaf.obj", make_vec3(0.,0,0), 0, nullrotation, RGB::black, "ZUP", true );
+
1066// uint objID = context_ptr->addPolymeshObject( UUIDs );
+
1067// return objID;
+
1068
+
1069 std::string leaf_texture = "plugins/plantarchitecture/assets/textures/TomatoLeaf_centered.png";
+
1070
+
1071 float leaf_aspect = 0.5; //ratio of leaf width to leaf length
+
1072
+
1073 float midrib_fold = 0.1; //fraction of folding along midrib (=0 leaf is flat, =1 leaf is completely folded in half)
+
1074
+
1075 float longitudinal_curvature = context_ptr->randu(-0.45f,-0.2f); //curvature factor along x-direction. (+curves upward, -curved downward)
+
1076
+
1077 float lateral_curvature = -0.3; //curvature factor along y-direction. (+curves upward, -curved downward)
+
1078
+
1079 //parameters for leaf wave/wrinkles
+
1080 float wave_period = 0.35f; //period factor of leaf waves
+
1081 float wave_amplitude = 0.08f; // amplitude of leaf waves
+
1082
+
1083 return buildGenericLeafPrototype(context_ptr, subdivisions, leaf_texture, leaf_aspect, midrib_fold, longitudinal_curvature, lateral_curvature, 0, wave_period, wave_amplitude, false);
+
1084
+
1085}
+
1086
+
1087uint TomatoFruitPrototype( helios::Context* context_ptr, uint subdivisions, float time_since_fruit_set ){
+
1088 std::vector<uint> UUIDs = context_ptr->loadOBJ( "plugins/plantarchitecture/assets/obj/TomatoFruit.obj", make_vec3(0.,0,0), 0.75,nullrotation, RGB::black, "ZUP", true );
+
1089 uint objID = context_ptr->addPolymeshObject( UUIDs );
+
1090 return objID;
+
1091}
+
1092
+
1093uint TomatoFlowerPrototype( helios::Context* context_ptr, uint subdivisions, bool flower_is_open ){
+
1094 std::vector<uint> UUIDs = context_ptr->loadOBJ( "plugins/plantarchitecture/assets/obj/TomatoFlower.obj", make_vec3(0.0,0,0), 0.75,nullrotation, RGB::black, "ZUP", true );
+
1095 uint objID = context_ptr->addPolymeshObject( UUIDs );
+
1096 return objID;
+
1097}
+
1098
+
1099void TomatoPhytomerCreationFunction( std::shared_ptr<Phytomer> phytomer, uint shoot_node_index, uint parent_shoot_node_index, uint shoot_max_nodes, float plant_age ){
+
1100
+
1101 if( shoot_node_index>5 || phytomer->rank>1 ) {
+
1102 phytomer->setVegetativeBudState(BUD_DEAD);
+
1103 }
+
1104 if( shoot_node_index<8 && phytomer->rank==0 ){
+
1105 phytomer->setFloralBudState(BUD_DEAD);
+
1106 }
+
1107
+
1108 //set leaf and internode scale based on position along the shoot
+
1109 float leaf_scale = fmin(1.f, 0.5 + 0.5 * plant_age / 10.f);
+
1110 phytomer->scaleLeafPrototypeScale(leaf_scale);
+
1111
+
1112 //set internode length based on position along the shoot
+
1113 float inode_scale = fmin(1.f, 0.7 + 0.3 * plant_age / 10.f);
+
1114 phytomer->scaleInternodeMaxLength(inode_scale);
+
1115
+
1116}
+
1117
+
1118uint WheatLeafPrototype( helios::Context* context_ptr, uint subdivisions, int compound_leaf_index ){
+
1119
+
1120 std::string leaf_texture = "plugins/plantarchitecture/assets/textures/SorghumLeaf.png";
+
1121
+
1122 float leaf_aspect = 0.2; //ratio of leaf width to leaf length
+
1123
+
1124 float midrib_fold_fraction = 0.3;
+
1125
+
1126 float longitudinal_curvature = context_ptr->randu(-2.2f,-1.5f);
+
1127 float lateral_curvature = -0.3;
+
1128
+
1129 float petiole_roll = 0.04f;
+
1130
+
1131 //parameters for leaf wave/wrinkles
+
1132 float wave_period = 0.1f; //period factor of leaf waves
+
1133 float wave_amplitude = 0.05f; // amplitude of leaf waves
+
1134
+
1135 return buildGenericLeafPrototype(context_ptr, subdivisions, leaf_texture, leaf_aspect, midrib_fold_fraction, longitudinal_curvature, lateral_curvature, petiole_roll, wave_period, wave_amplitude, false);
+
1136
+
1137}
+
1138
+
1139uint WheatSpikePrototype( helios::Context* context_ptr, uint subdivisions, float time_since_fruit_set ){
+
1140 std::vector<uint> UUIDs = context_ptr->loadOBJ( "plugins/plantarchitecture/assets/obj/WheatSpike.obj", make_vec3(0.,0,0), 0,nullrotation, RGB::black, "ZUP", true );
+
1141 uint objID = context_ptr->addPolymeshObject( UUIDs );
+
1142 return objID;
+
1143}
+
1144
+
1145void WheatPhytomerCreationFunction( std::shared_ptr<Phytomer> phytomer, uint shoot_node_index, uint parent_shoot_node_index, uint shoot_max_nodes, float plant_age ){
+
1146
+
1147 //set leaf scale based on position along the shoot
+
1148 float scale = fmin(1.f, 0.7 + 0.3*float(shoot_node_index)/5.f);
+
1149 phytomer->scaleLeafPrototypeScale(scale);
+
1150
+
1151 //set internode length based on position along the shoot
+
1152 phytomer->scaleInternodeMaxLength(scale);
+
1153
+
1154}
buildGenericLeafPrototype
uint buildGenericLeafPrototype(helios::Context *context_ptr, uint subdivisions, const std::string &leaf_texture, float leaf_aspect_ratio, float midrib_fold_fraction, float longitudinal_curvature, float lateral_curvature, float petiole_roll, float wave_period, float wave_amplitude, bool build_petiolule)
Function to procedurally build a generic leaf prototype with features such as midrib fold,...
Definition Assets.cpp:20
helios::Context
Stores the state associated with simulation.
Definition Context.h:1882
-
helios::Context::translatePrimitive
void translatePrimitive(uint UUID, const vec3 &shift)
Translate a primitive using its UUID.
Definition Context.cpp:1401
-
helios::Context::deletePrimitive
void deletePrimitive(uint UUID)
Delete a single primitive from the context.
Definition Context.cpp:1531
-
helios::Context::rotateObject
void rotateObject(uint ObjID, float rotation_radians, const char *rotation_axis_xyz)
Rotate a single compound object about the x, y, or z axis.
Definition Context.cpp:2832
-
helios::Context::randu
float randu()
Draw a random number from a uniform distribution between 0 and 1.
Definition Context.cpp:1173
-
helios::Context::rotatePrimitive
void rotatePrimitive(uint UUID, float rot, const char *axis)
Rotate a primitive about the x, y, or z axis using its UUID.
Definition Context.cpp:1415
-
helios::Context::translateObject
void translateObject(uint ObjID, const vec3 &shift)
Translate a single compound object.
Definition Context.cpp:2822
-
helios::Context::copyPrimitive
uint copyPrimitive(uint UUID)
Make a copy of a primitive from the context.
Definition Context.cpp:1573
+
helios::Context::setPrimitiveColor
void setPrimitiveColor(uint UUID, const helios::RGBcolor &color)
Method to set the diffuse color of a Primitive.
Definition Context.cpp:7083
+
helios::Context::translatePrimitive
void translatePrimitive(uint UUID, const vec3 &shift)
Translate a primitive using its UUID.
Definition Context.cpp:1396
+
helios::Context::deletePrimitive
void deletePrimitive(uint UUID)
Delete a single primitive from the context.
Definition Context.cpp:1526
+
helios::Context::rotateObject
void rotateObject(uint ObjID, float rotation_radians, const char *rotation_axis_xyz)
Rotate a single compound object about the x, y, or z axis.
Definition Context.cpp:2827
+
helios::Context::filterPrimitivesByData
std::vector< uint > filterPrimitivesByData(const std::vector< uint > &UUIDs, const std::string &primitive_data_label, float filter_value, const std::string &comparator)
Filter a set of primitives based on their primitive data and a condition and float value.
Definition Context_data.cpp:2224
+
helios::Context::randu
float randu()
Draw a random number from a uniform distribution between 0 and 1.
Definition Context.cpp:1168
+
helios::Context::rotatePrimitive
void rotatePrimitive(uint UUID, float rot, const char *axis)
Rotate a primitive about the x, y, or z axis using its UUID.
Definition Context.cpp:1410
+
helios::Context::translateObject
void translateObject(uint ObjID, const vec3 &shift)
Translate a single compound object.
Definition Context.cpp:2817
+
helios::Context::getObjectPrimitiveUUIDs
std::vector< uint > getObjectPrimitiveUUIDs(uint ObjID) const
Get primitive UUIDs associated with compound object (single object ID input)
Definition Context.cpp:2887
+
helios::Context::copyPrimitive
uint copyPrimitive(uint UUID)
Make a copy of a primitive from the context.
Definition Context.cpp:1568
helios::Context::loadOBJ
std::vector< uint > loadOBJ(const char *filename, bool silent=false)
Load geometry contained in a Wavefront OBJ file (.obj). Model will be placed at the origin without an...
Definition Context_fileIO.cpp:3734
-
helios::Context::scalePrimitive
void scalePrimitive(uint UUID, const helios::vec3 &S)
Scale a primitive using its UUID relative to the origin (0,0,0)
Definition Context.cpp:1486
-
helios::Context::scalePrimitiveAboutPoint
void scalePrimitiveAboutPoint(uint UUID, const helios::vec3 &S, const helios::vec3 point)
Scale a primitive using its UUID about an arbitrary point in space.
Definition Context.cpp:1507
+
helios::Context::scalePrimitive
void scalePrimitive(uint UUID, const helios::vec3 &S)
Scale a primitive using its UUID relative to the origin (0,0,0)
Definition Context.cpp:1481
+
helios::Context::scalePrimitiveAboutPoint
void scalePrimitiveAboutPoint(uint UUID, const helios::vec3 &S, const helios::vec3 point)
Scale a primitive using its UUID about an arbitrary point in space.
Definition Context.cpp:1502
helios::nullrotation
SphericalCoord nullrotation
Default null SphericalCoord that applies no rotation.
Definition global.cpp:57
-
helios::Context::addTubeObject
uint addTubeObject(uint radial_subdivisions, const std::vector< vec3 > &nodes, const std::vector< float > &radius)
Add a 3D tube compound object to the Context.
Definition Context.cpp:4638
-
helios::Context::addPolymeshObject
uint addPolymeshObject(const std::vector< uint > &UUIDs)
Add new Polymesh Compound Object.
Definition Context.cpp:5276
-
helios::Context::addSphere
std::vector< uint > addSphere(uint Ndivs, const vec3 &center, float radius)
Add a spherical compound object to the Context.
Definition Context.cpp:5523
-
helios::Context::addTube
std::vector< uint > addTube(uint Ndivs, const std::vector< vec3 > &nodes, const std::vector< float > &radius)
Add a 3D tube compound object to the Context.
Definition Context.cpp:5807
+
helios::Context::addTubeObject
uint addTubeObject(uint radial_subdivisions, const std::vector< vec3 > &nodes, const std::vector< float > &radius)
Add a 3D tube compound object to the Context.
Definition Context.cpp:4690
+
helios::Context::addPolymeshObject
uint addPolymeshObject(const std::vector< uint > &UUIDs)
Add new Polymesh Compound Object.
Definition Context.cpp:5343
+
helios::Context::addSphere
std::vector< uint > addSphere(uint Ndivs, const vec3 &center, float radius)
Add a spherical compound object to the Context.
Definition Context.cpp:5590
+
helios::Context::addTube
std::vector< uint > addTube(uint Ndivs, const std::vector< vec3 > &nodes, const std::vector< float > &radius)
Add a 3D tube compound object to the Context.
Definition Context.cpp:5874
+
helios::Context::addTile
std::vector< uint > addTile(const vec3 &center, const vec2 &size, const SphericalCoord &rotation, const int2 &subdiv)
Add a patch that is subdivided into a regular grid of sub-patches (tiled)
Definition Context.cpp:5753
helios::randu
float randu()
Random number from a uniform distribution between 0 and 1.
Definition global.cpp:223
+
helios::min
float min(const std::vector< float > &vect)
Minimum value of a vector of floats.
Definition global.cpp:1018
helios::deg2rad
float deg2rad(float deg)
Convert degrees to radians.
Definition global.cpp:576
-
helios::Context::addTriangle
uint addTriangle(const helios::vec3 &vertex0, const helios::vec3 &vertex1, const helios::vec3 &vertex2)
Add new Triangle geometric primitive.
Definition Context.cpp:1323
-
helios::make_vec3
vec3 make_vec3(float x, float y, float z)
Make a vec3 from three floats.
Definition helios_vector_types.h:587
-
helios::RGBcolor
R-G-B color vector.
Definition helios_vector_types.h:841
+
helios::max
float max(const std::vector< float > &vect)
Maximum value of a vector of floats.
Definition global.cpp:1064
+
helios::Context::addTriangle
uint addTriangle(const helios::vec3 &vertex0, const helios::vec3 &vertex1, const helios::vec3 &vertex2)
Add new Triangle geometric primitive.
Definition Context.cpp:1318
+
helios::make_int2
int2 make_int2(int x, int y)
Make an int2 vector from two ints.
Definition helios_vector_types.h:99
+
helios::make_vec2
vec2 make_vec2(float x, float y)
Make a vec2 from two floats.
Definition helios_vector_types.h:433
+
helios::make_RGBcolor
RGBcolor make_RGBcolor(float r, float g, float b)
Make an RGBcolor vector.
Definition helios_vector_types.h:954
+
helios::make_vec3
vec3 make_vec3(float x, float y, float z)
Make a vec3 from three floats.
Definition helios_vector_types.h:589
+
helios::RGBcolor
R-G-B color vector.
Definition helios_vector_types.h:844
helios::vec2
Vector of two elements of type 'float'.
Definition helios_vector_types.h:346
-
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:502
+
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:503
+
helios::vec3::x
float x
First element in vector.
Definition helios_vector_types.h:507
+
helios::vec3::z
float z
Third element in vector.
Definition helios_vector_types.h:511
+
helios::vec3::y
float y
Second element in vector.
Definition helios_vector_types.h:509
diff --git a/doc/html/_assets_8h_source.html b/doc/html/_assets_8h_source.html index 5b8e942c1..dfe48ce46 100644 --- a/doc/html/_assets_8h_source.html +++ b/doc/html/_assets_8h_source.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
@@ -118,70 +118,94 @@
26void AlmondPhytomerCreationFunction( std::shared_ptr<Phytomer> phytomer, uint shoot_node_index, uint parent_shoot_node_index, uint shoot_max_nodes, float plant_age );
27void AlmondPhytomerCallbackFunction( std::shared_ptr<Phytomer> phytomer );
28
-
29uint AsparagusLeafPrototype( helios::Context* context_ptr, uint subdivisions, int compound_leaf_index );
-
30void AsparagusPhytomerCreationFunction( std::shared_ptr<Phytomer> phytomer, uint shoot_node_index, uint parent_shoot_node_index, uint shoot_max_nodes, float plant_age );
-
31
-
32uint BeanLeafPrototype_unifoliate(helios::Context* context_ptr, uint subdivisions, int compound_leaf_index );
-
33uint BeanLeafPrototype_trifoliate(helios::Context* context_ptr, uint subdivisions, int compound_leaf_index );
-
34uint BeanLeafPrototype_unifoliate_OBJ(helios::Context* context_ptr, uint subdivisions, int compound_leaf_index );
-
35uint BeanLeafPrototype_trifoliate_OBJ(helios::Context* context_ptr, uint subdivisions, int compound_leaf_index );
-
36uint BeanFruitPrototype( helios::Context* context_ptr, uint subdivisions, float time_since_fruit_set );
-
37uint BeanFlowerPrototype( helios::Context* context_ptr, uint subdivisions, bool flower_is_open=false );
-
38void BeanPhytomerCreationFunction( std::shared_ptr<Phytomer> phytomer, uint shoot_node_index, uint parent_shoot_node_index, uint shoot_max_nodes, float plant_age );
-
39
-
40uint BindweedLeafPrototype( helios::Context* context_ptr, uint subdivisions, int compound_leaf_index0 );
-
41uint BindweedFlowerPrototype( helios::Context* context_ptr, uint subdivisions, bool flower_is_open=false );
-
42
-
43uint CheeseweedLeafPrototype( helios::Context* context_ptr, uint subdivisions, int compound_leaf_index );
-
44
-
45uint CowpeaLeafPrototype_unifoliate(helios::Context* context_ptr, uint subdivisions, int compound_leaf_index );
-
46uint CowpeaLeafPrototype_trifoliate(helios::Context* context_ptr, uint subdivisions, int compound_leaf_index );
-
47uint CowpeaLeafPrototype_unifoliate_OBJ(helios::Context* context_ptr, uint subdivisions, int compound_leaf_index );
-
48uint CowpeaLeafPrototype_trifoliate_OBJ(helios::Context* context_ptr, uint subdivisions, int compound_leaf_index );
-
49uint CowpeaFruitPrototype( helios::Context* context_ptr, uint subdivisions, float time_since_fruit_set );
-
50uint CowpeaFlowerPrototype( helios::Context* context_ptr, uint subdivisions, bool flower_is_open=false );
-
51void CowpeaPhytomerCreationFunction( std::shared_ptr<Phytomer> phytomer, uint shoot_node_index, uint parent_shoot_node_index, uint shoot_max_nodes, float plant_age );
-
52
-
53uint PuncturevineLeafPrototype( helios::Context* context_ptr, uint subdivisions, int compound_leaf_index );
-
54uint PuncturevineFlowerPrototype( helios::Context* context_ptr, uint subdivisions, bool flower_is_open=false );
-
55
-
56uint RedbudLeafPrototype( helios::Context* context_ptr, uint subdivisions, int compound_leaf_index );
-
57uint RedbudFlowerPrototype( helios::Context* context_ptr, uint subdivisions, bool flower_is_open=false );
-
58uint RedbudFruitPrototype( helios::Context* context_ptr, uint subdivisions, float time_since_fruit_set );
-
59void RedbudPhytomerCreationFunction( std::shared_ptr<Phytomer> phytomer, uint shoot_node_index, uint parent_shoot_node_index, uint shoot_max_nodes, float plant_age );
-
60void RedbudPhytomerCallbackFunction( std::shared_ptr<Phytomer> phytomer );
-
61
-
62uint RomaineLettuceLeafPrototype( helios::Context* context_ptr, uint subdivisions, int compound_leaf_index );
-
63void RomaineLettucePhytomerCreationFunction( std::shared_ptr<Phytomer> phytomer, uint shoot_node_index, uint parent_shoot_node_index, uint shoot_max_nodes, float plant_age );
+
29uint AppleLeafPrototype( helios::Context* context_ptr, uint subdivisions, int compound_leaf_index );
+
30uint AppleFruitPrototype( helios::Context* context_ptr, uint subdivisions, float time_since_fruit_set );
+
31uint AppleFlowerPrototype( helios::Context* context_ptr, uint subdivisions, bool flower_is_open=false );
+
32void ApplePhytomerCreationFunction( std::shared_ptr<Phytomer> phytomer, uint shoot_node_index, uint parent_shoot_node_index, uint shoot_max_nodes, float plant_age );
+
33void ApplePhytomerCallbackFunction( std::shared_ptr<Phytomer> phytomer );
+
34
+
35uint AsparagusLeafPrototype( helios::Context* context_ptr, uint subdivisions, int compound_leaf_index );
+
36void AsparagusPhytomerCreationFunction( std::shared_ptr<Phytomer> phytomer, uint shoot_node_index, uint parent_shoot_node_index, uint shoot_max_nodes, float plant_age );
+
37
+
38uint BeanLeafPrototype_unifoliate(helios::Context* context_ptr, uint subdivisions, int compound_leaf_index );
+
39uint BeanLeafPrototype_trifoliate(helios::Context* context_ptr, uint subdivisions, int compound_leaf_index );
+
40uint BeanLeafPrototype_unifoliate_OBJ(helios::Context* context_ptr, uint subdivisions, int compound_leaf_index );
+
41uint BeanLeafPrototype_trifoliate_OBJ(helios::Context* context_ptr, uint subdivisions, int compound_leaf_index );
+
42uint BeanFruitPrototype( helios::Context* context_ptr, uint subdivisions, float time_since_fruit_set );
+
43uint BeanFlowerPrototype( helios::Context* context_ptr, uint subdivisions, bool flower_is_open=false );
+
44void BeanPhytomerCreationFunction( std::shared_ptr<Phytomer> phytomer, uint shoot_node_index, uint parent_shoot_node_index, uint shoot_max_nodes, float plant_age );
+
45
+
46uint BindweedLeafPrototype( helios::Context* context_ptr, uint subdivisions, int compound_leaf_index0 );
+
47uint BindweedFlowerPrototype( helios::Context* context_ptr, uint subdivisions, bool flower_is_open=false );
+
48
+
49uint CheeseweedLeafPrototype( helios::Context* context_ptr, uint subdivisions, int compound_leaf_index );
+
50
+
51uint CowpeaLeafPrototype_unifoliate(helios::Context* context_ptr, uint subdivisions, int compound_leaf_index );
+
52uint CowpeaLeafPrototype_trifoliate(helios::Context* context_ptr, uint subdivisions, int compound_leaf_index );
+
53uint CowpeaLeafPrototype_unifoliate_OBJ(helios::Context* context_ptr, uint subdivisions, int compound_leaf_index );
+
54uint CowpeaLeafPrototype_trifoliate_OBJ(helios::Context* context_ptr, uint subdivisions, int compound_leaf_index );
+
55uint CowpeaFruitPrototype( helios::Context* context_ptr, uint subdivisions, float time_since_fruit_set );
+
56uint CowpeaFlowerPrototype( helios::Context* context_ptr, uint subdivisions, bool flower_is_open=false );
+
57void CowpeaPhytomerCreationFunction( std::shared_ptr<Phytomer> phytomer, uint shoot_node_index, uint parent_shoot_node_index, uint shoot_max_nodes, float plant_age );
+
58
+
59uint GrapevineLeafPrototype( helios::Context* context_ptr, uint subdivisions, int compound_leaf_index );
+
60uint GrapevineFruitPrototype( helios::Context* context_ptr, uint subdivisions, float time_since_fruit_set );
+
61//uint GrapevineFlowerPrototype( helios::Context* context_ptr, uint subdivisions, bool flower_is_open=false );
+
62void GrapevinePhytomerCreationFunction( std::shared_ptr<Phytomer> phytomer, uint shoot_node_index, uint parent_shoot_node_index, uint shoot_max_nodes, float plant_age );
+
63//void GrapevinePhytomerCallbackFunction( std::shared_ptr<Phytomer> phytomer );
64
-
65uint SorghumLeafPrototype( helios::Context* context_ptr, uint subdivisions, int compound_leaf_index );
-
66uint SorghumPaniclePrototype( helios::Context* context_ptr, uint subdivisions, float time_since_fruit_set );
-
67void SorghumPhytomerCreationFunction( std::shared_ptr<Phytomer> phytomer, uint shoot_node_index, uint parent_shoot_node_index, uint shoot_max_nodes, float plant_age );
-
68
-
69uint SoybeanLeafPrototype_unifoliate(helios::Context* context_ptr, uint subdivisions, int compound_leaf_index );
-
70uint SoybeanLeafPrototype_trifoliate(helios::Context* context_ptr, uint subdivisions, int compound_leaf_index );
-
71uint SoybeanFruitPrototype( helios::Context* context_ptr, uint subdivisions, float time_since_fruit_set );
-
72uint SoybeanFlowerPrototype( helios::Context* context_ptr, uint subdivisions, bool flower_is_open=false );
-
73void SoybeanPhytomerCreationFunction( std::shared_ptr<Phytomer> phytomer, uint shoot_node_index, uint parent_shoot_node_index, uint shoot_max_nodes, float plant_age );
-
74
-
75uint StrawberryLeafPrototype(helios::Context* context_ptr, uint subdivisions, int compound_leaf_index );
-
76uint StrawberryFruitPrototype( helios::Context* context_ptr, uint subdivisions, float time_since_fruit_set );
-
77uint StrawberryFlowerPrototype( helios::Context* context_ptr, uint subdivisions, bool flower_is_open=false );
-
78void StrawberryPhytomerCreationFunction( std::shared_ptr<Phytomer> phytomer, uint shoot_node_index, uint parent_shoot_node_index, uint shoot_max_nodes, float plant_age );
+
65uint OliveLeafPrototype( helios::Context* context_ptr, uint subdivisions, int compound_leaf_index );
+
66uint OliveFruitPrototype( helios::Context* context_ptr, uint subdivisions, float time_since_fruit_set );
+
67uint OliveFlowerPrototype( helios::Context* context_ptr, uint subdivisions, bool flower_is_open=false );
+
68void OlivePhytomerCreationFunction( std::shared_ptr<Phytomer> phytomer, uint shoot_node_index, uint parent_shoot_node_index, uint shoot_max_nodes, float plant_age );
+
69void OlivePhytomerCallbackFunction( std::shared_ptr<Phytomer> phytomer );
+
70
+
71uint PistachioLeafPrototype( helios::Context* context_ptr, uint subdivisions, int compound_leaf_index );
+
72uint PistachioFruitPrototype( helios::Context* context_ptr, uint subdivisions, float time_since_fruit_set );
+
73uint PistachioFlowerPrototype( helios::Context* context_ptr, uint subdivisions, bool flower_is_open=false );
+
74void PistachioPhytomerCreationFunction( std::shared_ptr<Phytomer> phytomer, uint shoot_node_index, uint parent_shoot_node_index, uint shoot_max_nodes, float plant_age );
+
75void PistachioPhytomerCallbackFunction( std::shared_ptr<Phytomer> phytomer );
+
76
+
77uint PuncturevineLeafPrototype( helios::Context* context_ptr, uint subdivisions, int compound_leaf_index );
+
78uint PuncturevineFlowerPrototype( helios::Context* context_ptr, uint subdivisions, bool flower_is_open=false );
79
-
80uint SugarbeetLeafPrototype( helios::Context* context_ptr, uint subdivisions, int compound_leaf_index );
-
81
-
82uint TomatoLeafPrototype( helios::Context* context_ptr, uint subdivisions, int compound_leaf_index );
-
83uint TomatoFruitPrototype( helios::Context* context_ptr, uint subdivisions, float time_since_fruit_set );
-
84uint TomatoFlowerPrototype( helios::Context* context_ptr, uint subdivisions, bool flower_is_open=false );
-
85void TomatoPhytomerCreationFunction( std::shared_ptr<Phytomer> phytomer, uint shoot_node_index, uint parent_shoot_node_index, uint shoot_max_nodes, float plant_age );
-
86
-
87uint WheatLeafPrototype( helios::Context* context_ptr, uint subdivisions, int compound_leaf_index );
-
88uint WheatSpikePrototype( helios::Context* context_ptr, uint subdivisions, float time_since_fruit_set );
-
89void WheatPhytomerCreationFunction( std::shared_ptr<Phytomer> phytomer, uint shoot_node_index, uint parent_shoot_node_index, uint shoot_max_nodes, float plant_age );
-
90
-
91
-
92#endif //HELIOS_ASSETS_H
+
80uint RedbudLeafPrototype( helios::Context* context_ptr, uint subdivisions, int compound_leaf_index );
+
81uint RedbudFlowerPrototype( helios::Context* context_ptr, uint subdivisions, bool flower_is_open=false );
+
82uint RedbudFruitPrototype( helios::Context* context_ptr, uint subdivisions, float time_since_fruit_set );
+
83void RedbudPhytomerCreationFunction( std::shared_ptr<Phytomer> phytomer, uint shoot_node_index, uint parent_shoot_node_index, uint shoot_max_nodes, float plant_age );
+
84void RedbudPhytomerCallbackFunction( std::shared_ptr<Phytomer> phytomer );
+
85
+
86uint RomaineLettuceLeafPrototype( helios::Context* context_ptr, uint subdivisions, int compound_leaf_index );
+
87void RomaineLettucePhytomerCreationFunction( std::shared_ptr<Phytomer> phytomer, uint shoot_node_index, uint parent_shoot_node_index, uint shoot_max_nodes, float plant_age );
+
88
+
89uint SorghumLeafPrototype( helios::Context* context_ptr, uint subdivisions, int compound_leaf_index );
+
90uint SorghumPaniclePrototype( helios::Context* context_ptr, uint subdivisions, float time_since_fruit_set );
+
91void SorghumPhytomerCreationFunction( std::shared_ptr<Phytomer> phytomer, uint shoot_node_index, uint parent_shoot_node_index, uint shoot_max_nodes, float plant_age );
+
92
+
93uint SoybeanLeafPrototype_unifoliate(helios::Context* context_ptr, uint subdivisions, int compound_leaf_index );
+
94uint SoybeanLeafPrototype_trifoliate(helios::Context* context_ptr, uint subdivisions, int compound_leaf_index );
+
95uint SoybeanFruitPrototype( helios::Context* context_ptr, uint subdivisions, float time_since_fruit_set );
+
96uint SoybeanFlowerPrototype( helios::Context* context_ptr, uint subdivisions, bool flower_is_open=false );
+
97void SoybeanPhytomerCreationFunction( std::shared_ptr<Phytomer> phytomer, uint shoot_node_index, uint parent_shoot_node_index, uint shoot_max_nodes, float plant_age );
+
98
+
99uint StrawberryLeafPrototype(helios::Context* context_ptr, uint subdivisions, int compound_leaf_index );
+
100uint StrawberryFruitPrototype( helios::Context* context_ptr, uint subdivisions, float time_since_fruit_set );
+
101uint StrawberryFlowerPrototype( helios::Context* context_ptr, uint subdivisions, bool flower_is_open=false );
+
102void StrawberryPhytomerCreationFunction( std::shared_ptr<Phytomer> phytomer, uint shoot_node_index, uint parent_shoot_node_index, uint shoot_max_nodes, float plant_age );
+
103
+
104uint SugarbeetLeafPrototype( helios::Context* context_ptr, uint subdivisions, int compound_leaf_index );
+
105
+
106uint TomatoLeafPrototype( helios::Context* context_ptr, uint subdivisions, int compound_leaf_index );
+
107uint TomatoFruitPrototype( helios::Context* context_ptr, uint subdivisions, float time_since_fruit_set );
+
108uint TomatoFlowerPrototype( helios::Context* context_ptr, uint subdivisions, bool flower_is_open=false );
+
109void TomatoPhytomerCreationFunction( std::shared_ptr<Phytomer> phytomer, uint shoot_node_index, uint parent_shoot_node_index, uint shoot_max_nodes, float plant_age );
+
110
+
111uint WheatLeafPrototype( helios::Context* context_ptr, uint subdivisions, int compound_leaf_index );
+
112uint WheatSpikePrototype( helios::Context* context_ptr, uint subdivisions, float time_since_fruit_set );
+
113void WheatPhytomerCreationFunction( std::shared_ptr<Phytomer> phytomer, uint shoot_node_index, uint parent_shoot_node_index, uint shoot_max_nodes, float plant_age );
+
114
+
115
+
116#endif //HELIOS_ASSETS_H
helios::Context
Stores the state associated with simulation.
Definition Context.h:1882
diff --git a/doc/html/_b_l_conductance_doc.html b/doc/html/_b_l_conductance_doc.html index cc8c85b8c..aa6e8c40d 100644 --- a/doc/html/_b_l_conductance_doc.html +++ b/doc/html/_b_l_conductance_doc.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
diff --git a/doc/html/_boundary_layer_conductance_model_8cpp.html b/doc/html/_boundary_layer_conductance_model_8cpp.html index 416b4bc3e..7ad165cda 100644 --- a/doc/html/_boundary_layer_conductance_model_8cpp.html +++ b/doc/html/_boundary_layer_conductance_model_8cpp.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
diff --git a/doc/html/_boundary_layer_conductance_model_8cpp_source.html b/doc/html/_boundary_layer_conductance_model_8cpp_source.html index 983f1bf5f..3822f5d92 100644 --- a/doc/html/_boundary_layer_conductance_model_8cpp_source.html +++ b/doc/html/_boundary_layer_conductance_model_8cpp_source.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
@@ -389,22 +389,22 @@
BLConductanceModel::BLConductanceModel
BLConductanceModel(helios::Context *context)
Constructor.
Definition BoundaryLayerConductanceModel.cpp:20
BLConductanceModel::enableMessages
void enableMessages()
Enable standard output from this plug-in (default)
Definition BoundaryLayerConductanceModel.cpp:86
helios::Context
Stores the state associated with simulation.
Definition Context.h:1882
-
helios::Context::getPrimitiveArea
float getPrimitiveArea(uint UUID) const
Method to return the surface area of a Primitive.
Definition Context.cpp:6930
+
helios::Context::getPrimitiveArea
float getPrimitiveArea(uint UUID) const
Method to return the surface area of a Primitive.
Definition Context.cpp:6997
helios::Context::getPrimitiveData
void getPrimitiveData(uint UUID, const char *label, int &data) const
Get data associated with a primitive element.
Definition Context_data.cpp:1001
-
helios::Context::getPrimitiveParentObjectID
uint getPrimitiveParentObjectID(uint UUID) const
Method to return the ID of the parent object the primitive belongs to (default is object 0)
Definition Context.cpp:6894
+
helios::Context::getPrimitiveParentObjectID
uint getPrimitiveParentObjectID(uint UUID) const
Method to return the ID of the parent object the primitive belongs to (default is object 0)
Definition Context.cpp:6961
helios::Context::doesPrimitiveDataExist
bool doesPrimitiveDataExist(uint UUID, const char *label) const
Check if primitive data 'label' exists.
Definition Context_data.cpp:1169
-
helios::Context::getAllUUIDs
std::vector< uint > getAllUUIDs() const
Get all primitive UUIDs currently in the Context.
Definition Context.cpp:1758
+
helios::Context::getAllUUIDs
std::vector< uint > getAllUUIDs() const
Get all primitive UUIDs currently in the Context.
Definition Context.cpp:1753
helios::Context::getPrimitiveDataType
HeliosDataType getPrimitiveDataType(uint UUID, const char *label) const
Get the Helios data type of primitive data.
Definition Context_data.cpp:1155
-
helios::Context::getObjectArea
float getObjectArea(uint ObjID) const
Method to return the one-sided surface area of an object.
Definition Context.cpp:7797
-
helios::Context::getPrimitiveNormal
helios::vec3 getPrimitiveNormal(uint UUID) const
Method to return the normal vector of a Primitive.
Definition Context.cpp:6981
+
helios::Context::getObjectArea
float getObjectArea(uint ObjID) const
Method to return the one-sided surface area of an object.
Definition Context.cpp:7864
+
helios::Context::getPrimitiveNormal
helios::vec3 getPrimitiveNormal(uint UUID) const
Method to return the normal vector of a Primitive.
Definition Context.cpp:7048
helios::Context::setPrimitiveData
void setPrimitiveData(const uint &UUID, const char *label, const int &data)
Add data value (int) associated with a primitive element.
Definition Context_data.cpp:655
helios::cart2sphere
SphericalCoord cart2sphere(const vec3 &Cartesian)
Convert Cartesian coordinates to spherical coordinates.
Definition global.cpp:610
-
helios::Context::addPatch
uint addPatch()
Add new default Patch geometric primitive, which is centered at the origin (0,0,0),...
Definition Context.cpp:1207
-
helios::make_vec2
vec2 make_vec2(float x, float y)
Make a vec2 from two floats.
Definition helios_vector_types.h:432
-
helios::make_vec3
vec3 make_vec3(float x, float y, float z)
Make a vec3 from three floats.
Definition helios_vector_types.h:587
-
helios::make_SphericalCoord
SphericalCoord make_SphericalCoord(float elevation_radians, float azimuth_radians)
Make a SphericalCoord by specifying elevation and azimuth.
Definition helios_vector_types.h:1536
-
helios::SphericalCoord::zenith
const float & zenith
Zenithal angle (radians)
Definition helios_vector_types.h:1487
-
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:502
+
helios::Context::addPatch
uint addPatch()
Add new default Patch geometric primitive, which is centered at the origin (0,0,0),...
Definition Context.cpp:1202
+
helios::make_vec2
vec2 make_vec2(float x, float y)
Make a vec2 from two floats.
Definition helios_vector_types.h:433
+
helios::make_vec3
vec3 make_vec3(float x, float y, float z)
Make a vec3 from three floats.
Definition helios_vector_types.h:589
+
helios::make_SphericalCoord
SphericalCoord make_SphericalCoord(float elevation_radians, float azimuth_radians)
Make a SphericalCoord by specifying elevation and azimuth.
Definition helios_vector_types.h:1539
+
helios::SphericalCoord::zenith
const float & zenith
Zenithal angle (radians)
Definition helios_vector_types.h:1490
+
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:503
diff --git a/doc/html/_boundary_layer_conductance_model_8h.html b/doc/html/_boundary_layer_conductance_model_8h.html index c4c0eb019..d4edc8a0f 100644 --- a/doc/html/_boundary_layer_conductance_model_8h.html +++ b/doc/html/_boundary_layer_conductance_model_8h.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
diff --git a/doc/html/_boundary_layer_conductance_model_8h_source.html b/doc/html/_boundary_layer_conductance_model_8h_source.html index 17b71e227..853d7e9e9 100644 --- a/doc/html/_boundary_layer_conductance_model_8h_source.html +++ b/doc/html/_boundary_layer_conductance_model_8h_source.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
diff --git a/doc/html/_c_lion_i_d_e.html b/doc/html/_c_lion_i_d_e.html index dec4122d2..0538382cd 100644 --- a/doc/html/_c_lion_i_d_e.html +++ b/doc/html/_c_lion_i_d_e.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
diff --git a/doc/html/_camera_calibration_8cpp.html b/doc/html/_camera_calibration_8cpp.html index 74d4e76ff..5e84cc570 100644 --- a/doc/html/_camera_calibration_8cpp.html +++ b/doc/html/_camera_calibration_8cpp.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
diff --git a/doc/html/_camera_calibration_8cpp_source.html b/doc/html/_camera_calibration_8cpp_source.html index 8150a1324..fd6059119 100644 --- a/doc/html/_camera_calibration_8cpp_source.html +++ b/doc/html/_camera_calibration_8cpp_source.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
@@ -792,25 +792,25 @@
helios::HELIOS_TYPE_FLOAT
@ HELIOS_TYPE_FLOAT
floating point data type
Definition Context.h:47
helios::Context
Stores the state associated with simulation.
Definition Context.h:1882
helios::Context::loadXML
std::vector< uint > loadXML(const char *filename, bool quiet=false)
Load inputs specified in an XML file.
Definition Context_fileIO.cpp:1217
-
helios::Context::translatePrimitive
void translatePrimitive(uint UUID, const vec3 &shift)
Translate a primitive using its UUID.
Definition Context.cpp:1401
+
helios::Context::translatePrimitive
void translatePrimitive(uint UUID, const vec3 &shift)
Translate a primitive using its UUID.
Definition Context.cpp:1396
helios::Context::getPrimitiveData
void getPrimitiveData(uint UUID, const char *label, int &data) const
Get data associated with a primitive element.
Definition Context_data.cpp:1001
-
helios::Context::deletePrimitive
void deletePrimitive(uint UUID)
Delete a single primitive from the context.
Definition Context.cpp:1531
-
helios::Context::rotatePrimitive
void rotatePrimitive(uint UUID, float rot, const char *axis)
Rotate a primitive about the x, y, or z axis using its UUID.
Definition Context.cpp:1415
-
helios::Context::doesGlobalDataExist
bool doesGlobalDataExist(const char *label) const
Check if global data 'label' exists.
Definition Context_data.cpp:4447
+
helios::Context::deletePrimitive
void deletePrimitive(uint UUID)
Delete a single primitive from the context.
Definition Context.cpp:1526
+
helios::Context::rotatePrimitive
void rotatePrimitive(uint UUID, float rot, const char *axis)
Rotate a primitive about the x, y, or z axis using its UUID.
Definition Context.cpp:1410
+
helios::Context::doesGlobalDataExist
bool doesGlobalDataExist(const char *label) const
Check if global data 'label' exists.
Definition Context_data.cpp:4458
helios::Context::doesPrimitiveDataExist
bool doesPrimitiveDataExist(uint UUID, const char *label) const
Check if primitive data 'label' exists.
Definition Context_data.cpp:1169
helios::Context::getGlobalData
void getGlobalData(const char *label, int &data) const
Get global data value (scalar integer)
Definition Context_data.cpp:4053
-
helios::Context::getAllUUIDs
std::vector< uint > getAllUUIDs() const
Get all primitive UUIDs currently in the Context.
Definition Context.cpp:1758
+
helios::Context::getAllUUIDs
std::vector< uint > getAllUUIDs() const
Get all primitive UUIDs currently in the Context.
Definition Context.cpp:1753
helios::Context::setGlobalData
void setGlobalData(const char *label, const int &data)
Add global data value (int)
Definition Context_data.cpp:3769
helios::Context::setPrimitiveData
void setPrimitiveData(const uint &UUID, const char *label, const int &data)
Add data value (int) associated with a primitive element.
Definition Context_data.cpp:655
-
helios::interp1
float interp1(const std::vector< helios::vec2 > &points, float x)
Function to perform linear interpolation based on a vector of discrete (x,y) values.
Definition global.cpp:2938
+
helios::interp1
float interp1(const std::vector< helios::vec2 > &points, float x)
Function to perform linear interpolation based on a vector of discrete (x,y) values.
Definition global.cpp:2940
helios::helios_runtime_error
void helios_runtime_error(const std::string &error_message)
Function to throw a runtime error.
Definition global.cpp:29
helios::nullrotation
SphericalCoord nullrotation
Default null SphericalCoord that applies no rotation.
Definition global.cpp:57
helios::sum
float sum(const std::vector< float > &vect)
Sum of a vector of floats.
Definition global.cpp:987
-
helios::Context::addPatch
uint addPatch()
Add new default Patch geometric primitive, which is centered at the origin (0,0,0),...
Definition Context.cpp:1207
+
helios::Context::addPatch
uint addPatch()
Add new default Patch geometric primitive, which is centered at the origin (0,0,0),...
Definition Context.cpp:1202
helios::make_int2
int2 make_int2(int x, int y)
Make an int2 vector from two ints.
Definition helios_vector_types.h:99
-
helios::make_vec2
vec2 make_vec2(float x, float y)
Make a vec2 from two floats.
Definition helios_vector_types.h:432
-
helios::make_vec3
vec3 make_vec3(float x, float y, float z)
Make a vec3 from three floats.
Definition helios_vector_types.h:587
-
helios::make_SphericalCoord
SphericalCoord make_SphericalCoord(float elevation_radians, float azimuth_radians)
Make a SphericalCoord by specifying elevation and azimuth.
Definition helios_vector_types.h:1536
+
helios::make_vec2
vec2 make_vec2(float x, float y)
Make a vec2 from two floats.
Definition helios_vector_types.h:433
+
helios::make_vec3
vec3 make_vec3(float x, float y, float z)
Make a vec3 from three floats.
Definition helios_vector_types.h:589
+
helios::make_SphericalCoord
SphericalCoord make_SphericalCoord(float elevation_radians, float azimuth_radians)
Make a SphericalCoord by specifying elevation and azimuth.
Definition helios_vector_types.h:1539
CameraCalibration::loadXMLlabeldata
bool loadXMLlabeldata(const std::string &filename, const std::string &labelname, std::vector< helios::vec2 > &spectraldata)
Load XML file and save data in spectral vectors containing both wavelengths and spectral values.
Definition CameraCalibration.cpp:205
CameraCalibration::writeCalibratedCameraResponses
void writeCalibratedCameraResponses(const std::vector< std::string > &camerareponselabels, const std::string &calibratemark, float scale)
Write calibrated camera response spectra.
Definition CameraCalibration.cpp:366
CameraCalibration::getCameraResponseScale
float getCameraResponseScale(const std::string &cameralabel, const helios::int2 cameraresolution, const std::vector< std::string > &bandlabels, const std::vector< std::vector< float > > &truevalues)
Get camera spectral response scale.
Definition CameraCalibration.cpp:599
@@ -824,17 +824,17 @@
CameraCalibration::addCheckerboard
std::vector< uint > addCheckerboard(const helios::int2 &boardsidesize, const float &patchsize, const helios::vec3 &centrelocation, const helios::vec3 &rotationrad, bool firstblack=true)
Add checker board geometry into context.
Definition CameraCalibration.cpp:23
CameraCalibration::addColorboard
std::vector< uint > addColorboard(const helios::vec3 &centrelocation, float patchsize, const helios::vec3 &rotationrad, const std::vector< std::vector< helios::RGBcolor > > &colorassignment={}, const std::vector< std::vector< std::string > > &spectrumassignment={})
Add color board geometry into context.
Definition CameraCalibration.cpp:86
CameraCalibration::readROMCCanopy
std::vector< uint > readROMCCanopy()
Read ROMC canopy file (Used for self test).
Definition CameraCalibration.cpp:639
-
helios::RGBcolor
R-G-B color vector.
Definition helios_vector_types.h:841
+
helios::RGBcolor
R-G-B color vector.
Definition helios_vector_types.h:844
helios::int2
Vector of two elements of type 'int'.
Definition helios_vector_types.h:44
helios::int2::y
int y
Second element in vector.
Definition helios_vector_types.h:50
helios::int2::x
int x
First element in vector.
Definition helios_vector_types.h:48
helios::vec2
Vector of two elements of type 'float'.
Definition helios_vector_types.h:346
helios::vec2::x
float x
First element in vector.
Definition helios_vector_types.h:350
helios::vec2::y
float y
Second element in vector.
Definition helios_vector_types.h:352
-
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:502
-
helios::vec3::x
float x
First element in vector.
Definition helios_vector_types.h:506
-
helios::vec3::z
float z
Third element in vector.
Definition helios_vector_types.h:510
-
helios::vec3::y
float y
Second element in vector.
Definition helios_vector_types.h:508
+
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:503
+
helios::vec3::x
float x
First element in vector.
Definition helios_vector_types.h:507
+
helios::vec3::z
float z
Third element in vector.
Definition helios_vector_types.h:511
+
helios::vec3::y
float y
Second element in vector.
Definition helios_vector_types.h:509
diff --git a/doc/html/_camera_calibration_8h.html b/doc/html/_camera_calibration_8h.html index c28c92d2f..ad53239a4 100644 --- a/doc/html/_camera_calibration_8h.html +++ b/doc/html/_camera_calibration_8h.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
diff --git a/doc/html/_camera_calibration_8h_source.html b/doc/html/_camera_calibration_8h_source.html index 5d338dbaf..81a971070 100644 --- a/doc/html/_camera_calibration_8h_source.html +++ b/doc/html/_camera_calibration_8h_source.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
@@ -233,7 +233,7 @@
232#endif //HELIOS_CAMERACALIBRATION_H
helios::Context
Stores the state associated with simulation.
Definition Context.h:1882
-
helios::make_RGBcolor
RGBcolor make_RGBcolor(float r, float g, float b)
Make an RGBcolor vector.
Definition helios_vector_types.h:951
+
helios::make_RGBcolor
RGBcolor make_RGBcolor(float r, float g, float b)
Make an RGBcolor vector.
Definition helios_vector_types.h:954
CameraCalibration::GradientDescentParameters
Parameter struct for gradient descent.
Definition CameraCalibration.h:117
CameraCalibration
Camera calibration structure used for camera calibration tasks.
Definition CameraCalibration.h:21
CameraCalibration::loadXMLlabeldata
bool loadXMLlabeldata(const std::string &filename, const std::string &labelname, std::vector< helios::vec2 > &spectraldata)
Load XML file and save data in spectral vectors containing both wavelengths and spectral values.
Definition CameraCalibration.cpp:205
@@ -249,10 +249,10 @@
CameraCalibration::addCheckerboard
std::vector< uint > addCheckerboard(const helios::int2 &boardsidesize, const float &patchsize, const helios::vec3 &centrelocation, const helios::vec3 &rotationrad, bool firstblack=true)
Add checker board geometry into context.
Definition CameraCalibration.cpp:23
CameraCalibration::addColorboard
std::vector< uint > addColorboard(const helios::vec3 &centrelocation, float patchsize, const helios::vec3 &rotationrad, const std::vector< std::vector< helios::RGBcolor > > &colorassignment={}, const std::vector< std::vector< std::string > > &spectrumassignment={})
Add color board geometry into context.
Definition CameraCalibration.cpp:86
CameraCalibration::readROMCCanopy
std::vector< uint > readROMCCanopy()
Read ROMC canopy file (Used for self test).
Definition CameraCalibration.cpp:639
-
helios::RGBcolor
R-G-B color vector.
Definition helios_vector_types.h:841
+
helios::RGBcolor
R-G-B color vector.
Definition helios_vector_types.h:844
helios::int2
Vector of two elements of type 'int'.
Definition helios_vector_types.h:44
helios::vec2
Vector of two elements of type 'float'.
Definition helios_vector_types.h:346
-
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:502
+
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:503
diff --git a/doc/html/_canopy_generator_8cpp.html b/doc/html/_canopy_generator_8cpp.html index 7aa28f909..d5a47486f 100644 --- a/doc/html/_canopy_generator_8cpp.html +++ b/doc/html/_canopy_generator_8cpp.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
@@ -168,7 +168,7 @@

Definition at line 3055 of file CanopyGenerator.cpp.

+

Definition at line 3296 of file CanopyGenerator.cpp.

@@ -200,7 +200,7 @@

Definition at line 2775 of file CanopyGenerator.cpp.

+

Definition at line 3003 of file CanopyGenerator.cpp.

@@ -232,7 +232,7 @@

Definition at line 3020 of file CanopyGenerator.cpp.

+

Definition at line 3261 of file CanopyGenerator.cpp.

@@ -264,7 +264,7 @@

Definition at line 2985 of file CanopyGenerator.cpp.

+

Definition at line 3226 of file CanopyGenerator.cpp.

diff --git a/doc/html/_canopy_generator_8cpp_source.html b/doc/html/_canopy_generator_8cpp_source.html index 49dcc8fad..01342ddc8 100644 --- a/doc/html/_canopy_generator_8cpp_source.html +++ b/doc/html/_canopy_generator_8cpp_source.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
@@ -110,2731 +110,2840 @@
18
19using namespace helios;
20
-
-
21HomogeneousCanopyParameters::HomogeneousCanopyParameters(){
-
22
-
23 leaf_size = make_vec2(0.1,0.1);
-
24
-
25 leaf_subdivisions = make_int2(1,1);
-
26
-
27 leaf_color = RGB::green;
-
28
-
29 leaf_angle_distribution = "spherical";
-
30
-
31 leaf_area_index = 1.f;
+
22static float nullvalue_f = 99999;
+
24static int nullvalue_i = 99999;
+
26static std::string nullvalue_s = "99999";
+
27
+
32
-
33 canopy_height = 1.f;
-
34
-
35 canopy_extent = make_vec2(5,5);
+
+
33BaseCanopyParameters::BaseCanopyParameters(const pugi::xml_node canopy_node) : BaseCanopyParameters(){
+
34 readParametersFromXML(canopy_node);
+
35}
+
36
-
37 canopy_origin = make_vec3(0,0,0);
-
38
-
39 buffer = "z";
-
40
-
41}
-
-
42
-
-
43SphericalCrownsCanopyParameters::SphericalCrownsCanopyParameters(){
-
44
-
45 leaf_size = make_vec2(0.025,0.025);
-
46
-
47 leaf_subdivisions = make_int2(1,1);
-
48
-
49 leaf_color = RGB::green;
+
+
37void BaseCanopyParameters::readParametersFromXML(const pugi::xml_node canopy_node){
+
38 // ----- canopy origin ------ //
+
39 vec3 new_canopy_origin = XMLloadvec3(canopy_node, "canopy_origin");
+
40 if (new_canopy_origin.x != nullvalue_f && new_canopy_origin.y != nullvalue_f) {
+
41 canopy_origin = new_canopy_origin;
+
42 }
+
43
+
44 // ----- canopy rotation ------ //
+
45 float new_canopy_rotation = XMLloadfloat(canopy_node, "canopy_rotation");
+
46 if (new_canopy_rotation != nullvalue_f) {
+
47 canopy_rotation = new_canopy_rotation;
+
48 }
+
49}
+
50
-
51 leaf_angle_distribution = "spherical";
+
+
51HomogeneousCanopyParameters::HomogeneousCanopyParameters() : BaseCanopyParameters(){
52
-
53 leaf_area_density = 1.f;
+
53 leaf_size = make_vec2(0.1,0.1);
54
-
55 crown_radius = make_vec3(0.5f,0.5f,0.5f);
+
55 leaf_subdivisions = make_int2(1,1);
56
-
57 canopy_configuration = "uniform";
+
57 leaf_color = RGB::green;
58
-
59 plant_spacing = make_vec2(2.f,2.f);
+
59 leaf_angle_distribution = "spherical";
60
-
61 plant_count = make_int2(5,5);
+
61 leaf_area_index = 1.f;
62
-
63 canopy_origin = make_vec3(0,0,0);
+
63 canopy_height = 1.f;
64
-
65 canopy_rotation = 0.f;
+
65 canopy_extent = make_vec2(5,5);
66
-
67}
-
+
67 buffer = "z";
68
-
70
-
71 leaf_size = make_vec2(0.025,0.025);
-
72
-
73 leaf_subdivisions = make_int2(1,1);
+
74
-
75 leaf_color = RGB::green;
-
76
-
77 leaf_angle_distribution = "spherical";
-
78
-
79 leaf_area_density = 1.f;
-
80
-
81 crown_radius = 0.5f;
-
82
-
83 crown_height = 1.f;
-
84
-
85 canopy_configuration = "uniform";
-
86
-
87 plant_spacing = make_vec2(2.f,2.f);
-
88
-
89 plant_count = make_int2(5,5);
-
90
-
91 canopy_origin = make_vec3(0,0,0);
-
92
-
93 canopy_rotation = 0.f;
-
94
-
95}
-
-
96
-
-
97VSPGrapevineParameters::VSPGrapevineParameters(){
-
98
-
99 leaf_width = 0.18;
-
100
-
101 leaf_subdivisions = make_int2(1,1);
-
102
-
103 leaf_texture_file = "plugins/canopygenerator/textures/GrapeLeaf.png";
-
104
-
105 wood_texture_file = "plugins/canopygenerator/textures/wood.jpg";
-
106
-
107 wood_subdivisions = 10;
-
108
-
109 trunk_height = 0.7;
-
110
-
111 trunk_radius = 0.05;
-
112
-
113 cordon_height = 0.9;
-
114
-
115 cordon_radius = 0.02;
-
116
-
117 shoot_length = 0.9;
-
118
-
119 shoot_radius = 0.005;
-
120
-
121 shoots_per_cordon = 10;
-
122
-
123 leaf_spacing_fraction = 0.5;
-
124
-
125 grape_radius = 0.0075;
+
+
75void HomogeneousCanopyParameters::readParametersFromXML(const pugi::xml_node canopy_node){
+
76 BaseCanopyParameters::readParametersFromXML(canopy_node);
+
77
+
78 // ----- leaf size ------//
+
79 vec2 new_leaf_size = XMLloadvec2(canopy_node, "leaf_size");
+
80 if (new_leaf_size.x != nullvalue_f && new_leaf_size.y != nullvalue_f) {
+
81 leaf_size = new_leaf_size;
+
82 }
+
83
+
84 // ----- leaf subdivisions ------//
+
85 int2 new_leaf_subdivisions = XMLloadint2(canopy_node, "leaf_subdivisions");
+
86 if (new_leaf_subdivisions.x != nullvalue_i && new_leaf_subdivisions.y != nullvalue_i) {
+
87 leaf_subdivisions = new_leaf_subdivisions;
+
88 }
+
89
+
90 // ----- leaf color ------//
+
91 RGBAcolor new_leaf_color = XMLloadrgba(canopy_node, "leaf_color");
+
92 if (new_leaf_color.a != 0) {
+
93 leaf_color = make_RGBcolor(new_leaf_color.r, new_leaf_color.g, new_leaf_color.b);
+
94 }
+
95
+
96 // ----- leaf texture file ------//
+
97 std::string new_leaf_texture_file = XMLloadstring(canopy_node, "leaf_texture_file");
+
98 if (new_leaf_texture_file != nullvalue_s) {
+
99 leaf_texture_file = new_leaf_texture_file;
+
100 }
+
101
+
102 // ----- leaf area index ------//
+
103 float LAI = XMLloadfloat(canopy_node, "leaf_area_index");
+
104 if (LAI != nullvalue_f) {
+
105 leaf_area_index = LAI;
+
106 }
+
107
+
108 // ----- canopy height ------//
+
109 float h = XMLloadfloat(canopy_node, "canopy_height");
+
110 if (h != nullvalue_f) {
+
111 canopy_height = h;
+
112 }
+
113
+
114 // ----- canopy extent ------//
+
115 vec2 new_canopy_extent = XMLloadvec2(canopy_node, "canopy_extent");
+
116 if (new_canopy_extent.x != nullvalue_f && new_canopy_extent.y != nullvalue_f) {
+
117 canopy_extent = new_canopy_extent;
+
118 }
+
119
+
120 // ----- buffer ------//
+
121 std::string new_buffer = XMLloadstring(canopy_node, "buffer");
+
122 if ( new_buffer != nullvalue_s ) {
+
123 buffer = new_buffer;
+
124 }
+
125}
+
126
-
127 cluster_radius = 0.03;
-
128
-
129 cluster_height_max = 0.15;
+
+
127void HomogeneousCanopyParameters::buildPlant(CanopyGenerator& canopy_generator, helios::vec3 origin){
+
128 std::cout << "HomogeneousCanopyParameters::buildPlant: Cannot build a single plant of canopy type HomogeneousCanopyParameters" << std::endl;
+
129}
+
130
-
131 grape_color = make_RGBcolor(0.18,0.2,0.25);
-
132
-
133 grape_subdivisions = 8;
+
+
131void HomogeneousCanopyParameters::buildCanopy(CanopyGenerator& canopy_generator){
+
132 canopy_generator.buildCanopy(*this);
+
133}
+
134
-
135 plant_spacing = 2;
+
+
135SphericalCrownsCanopyParameters::SphericalCrownsCanopyParameters() : BaseCanopyParameters(){
136
-
137 row_spacing = 2;
+
137 leaf_size = make_vec2(0.025,0.025);
138
-
139 plant_count = make_int2(3,3);
+
139 leaf_subdivisions = make_int2(1,1);
140
-
141 canopy_origin = make_vec3(0,0,0);
+
141 leaf_color = RGB::green;
142
-
143 canopy_rotation = 0;
+
143 leaf_angle_distribution = "spherical";
144
-
145}
-
+
145 leaf_area_density = 1.f;
146
-
-
147SplitGrapevineParameters::SplitGrapevineParameters(){
+
147 crown_radius = make_vec3(0.5f,0.5f,0.5f);
148
-
149 leaf_width = 0.18;
+
149 canopy_configuration = "uniform";
150
-
151 leaf_subdivisions = make_int2(1,1);
+
151 plant_spacing = make_vec2(2.f,2.f);
152
-
153 leaf_texture_file = "plugins/canopygenerator/textures/GrapeLeaf.png";
+
153 plant_count = make_int2(5,5);
154
-
155 wood_texture_file = "plugins/canopygenerator/textures/wood.jpg";
+
155}
+
156
-
157 wood_subdivisions = 10;
-
158
-
159 trunk_height = 1.3;
+
160
-
161 trunk_radius = 0.05;
-
162
-
163 cordon_height = 1.5;
-
164
-
165 cordon_radius = 0.02;
-
166
-
167 cordon_spacing = 1.f;
-
168
-
169 shoot_length = 1.2;
-
170
-
171 shoot_radius = 0.0025;
-
172
-
173 shoots_per_cordon = 10;
-
174
-
175 shoot_angle_tip = 0.4*M_PI;
-
176
-
177 shoot_angle_base = 0.;
-
178
-
179 leaf_spacing_fraction = 0.6;
-
180
-
181 grape_radius = 0.0075;
-
182
-
183 cluster_radius = 0.03;
-
184
-
185 cluster_height_max = 0.1;
-
186
-
187 grape_color = make_RGBcolor(0.18,0.2,0.25);
-
188
-
189 grape_subdivisions = 8;
-
190
-
191 plant_spacing = 2;
-
192
-
193 row_spacing = 4;
-
194
-
195 plant_count = make_int2(3,3);
-
196
-
197 canopy_origin = make_vec3(0,0,0);
-
198
-
199 canopy_rotation = 0;
-
200
-
201}
-
-
202
-
-
203UnilateralGrapevineParameters::UnilateralGrapevineParameters(){
-
204
-
205 leaf_width = 0.18;
-
206
-
207 leaf_subdivisions = make_int2(1,1);
-
208
-
209 leaf_texture_file = "plugins/canopygenerator/textures/GrapeLeaf.png";
-
210
-
211 wood_texture_file = "plugins/canopygenerator/textures/wood.jpg";
-
212
-
213 wood_subdivisions = 10;
-
214
-
215 trunk_height = 0.7;
-
216
-
217 trunk_radius = 0.05;
-
218
-
219 cordon_height = 0.9;
-
220
-
221 cordon_radius = 0.04;
-
222
-
223 shoot_length = 0.9;
+
+
161void SphericalCrownsCanopyParameters::readParametersFromXML(const pugi::xml_node canopy_node){
+
162 BaseCanopyParameters::readParametersFromXML(canopy_node);
+
163
+
164 // ----- leaf size ------//
+
165 vec2 new_leaf_size = XMLloadvec2(canopy_node, "leaf_size");
+
166 if (new_leaf_size.x != nullvalue_f && new_leaf_size.y != nullvalue_f) {
+
167 leaf_size = new_leaf_size;
+
168 }
+
169
+
170 // ----- leaf subdivisions ------//
+
171 int2 new_leaf_subdivisions = XMLloadint2(canopy_node, "leaf_subdivisions");
+
172 if (new_leaf_subdivisions.x != nullvalue_i && new_leaf_subdivisions.y != nullvalue_i) {
+
173 leaf_subdivisions = new_leaf_subdivisions;
+
174 }
+
175
+
176 // ----- leaf color ------//
+
177 RGBAcolor new_leaf_color = XMLloadrgba(canopy_node, "leaf_color");
+
178 if (new_leaf_color.a != 0) {
+
179 leaf_color = make_RGBcolor(new_leaf_color.r, new_leaf_color.g, new_leaf_color.b);
+
180 }
+
181
+
182 // ----- leaf texture file ------//
+
183 std::string new_leaf_texture_file = XMLloadstring(canopy_node, "leaf_texture_file");
+
184 if (new_leaf_texture_file != nullvalue_s) {
+
185 leaf_texture_file = new_leaf_texture_file;
+
186 }
+
187
+
188 // ----- leaf angle distribution ------//
+
189 std::string new_leaf_angle_distribution = XMLloadstring(canopy_node, "leaf_angle_distribution");
+
190 if (new_leaf_angle_distribution != nullvalue_s) {
+
191 leaf_angle_distribution = new_leaf_angle_distribution;
+
192 }
+
193
+
194 // ----- leaf area density ------//
+
195 float new_leaf_area_density = XMLloadfloat(canopy_node, "leaf_area_density");
+
196 if (new_leaf_area_density != nullvalue_f) {
+
197 leaf_area_density = new_leaf_area_density;
+
198 }
+
199
+
200 // ----- crown radius ------//
+
201 vec3 new_crown_radius = XMLloadvec3(canopy_node, "crown_radius");
+
202 if (new_crown_radius.x != nullvalue_f && new_crown_radius.y != nullvalue_f) {
+
203 crown_radius = new_crown_radius;
+
204 }
+
205
+
206 // ----- canopy configuration ------//
+
207 std::string new_canopy_configuration = XMLloadstring(canopy_node, "canopy_configuration");
+
208 if (new_canopy_configuration != nullvalue_s) {
+
209 canopy_configuration = new_canopy_configuration;
+
210 }
+
211
+
212 // ----- plant spacing ------//
+
213 vec2 new_plant_spacing = XMLloadvec2(canopy_node, "plant_spacing");
+
214 if (new_plant_spacing.x != nullvalue_f && new_plant_spacing.y != nullvalue_f) {
+
215 plant_spacing = new_plant_spacing;
+
216 }
+
217
+
218 // ----- plant count ------//
+
219 int2 new_plant_count = XMLloadint2(canopy_node, "plant_count");
+
220 if (new_plant_count.x != nullvalue_i && new_plant_count.y != nullvalue_i) {
+
221 plant_count = new_plant_count;
+
222 }
+
223}
+
224
-
225 shoot_radius = 0.0025;
-
226
-
227 shoots_per_cordon = 20;
+
+
225void SphericalCrownsCanopyParameters::buildPlant(CanopyGenerator& canopy_generator, helios::vec3 origin){
+
226 std::cout << "SphericalCrownsCanopyParameters::buildPlant: Cannot build a single plant of canopy type SphericalCrownsCanopyParameters" << std::endl;
+
227}
+
228
-
229 leaf_spacing_fraction = 0.6;
-
230
-
231 grape_radius = 0.0075;
+
+
229void SphericalCrownsCanopyParameters::buildCanopy(CanopyGenerator& canopy_generator){
+
230 canopy_generator.buildCanopy(*this);
+
231}
+
232
-
233 cluster_radius = 0.03;
+
+
233ConicalCrownsCanopyParameters::ConicalCrownsCanopyParameters() : BaseCanopyParameters(){
234
-
235 cluster_height_max = 0.1;
+
235 leaf_size = make_vec2(0.025,0.025);
236
-
237 grape_color = make_RGBcolor(0.18,0.2,0.25);
+
237 leaf_subdivisions = make_int2(1,1);
238
-
239 grape_subdivisions = 8;
+
239 leaf_color = RGB::green;
240
-
241 plant_spacing = 1.5;
+
241 leaf_angle_distribution = "spherical";
242
-
243 row_spacing = 2;
+
243 leaf_area_density = 1.f;
244
-
245 plant_count = make_int2(3,3);
+
245 crown_radius = 0.5f;
246
-
247 canopy_origin = make_vec3(0,0,0);
+
247 crown_height = 1.f;
248
-
249 canopy_rotation = 0;
+
249 canopy_configuration = "uniform";
250
-
251}
-
+
251 plant_spacing = make_vec2(2.f,2.f);
252
-
256
-
257 leaf_subdivisions = make_int2(1,1);
-
258
-
259 leaf_texture_file = "plugins/canopygenerator/textures/GrapeLeaf.png";
+
260
-
261 wood_texture_file = "plugins/canopygenerator/textures/wood.jpg";
-
262
-
263 wood_subdivisions = 10;
-
264
-
265 trunk_height = 0.7;
-
266
-
267 trunk_radius = 0.05;
-
268
-
269 cordon_height = 0.9;
-
270
-
271 cordon_radius = 0.02;
-
272
-
273 shoot_length = 0.9;
-
274
-
275 shoot_radius = 0.0025;
-
276
-
277 shoots_per_cordon = 10;
-
278
-
279 leaf_spacing_fraction = 0.6;
-
280
-
281 grape_radius = 0.0075;
-
282
-
283 cluster_radius = 0.03;
-
284
-
285 cluster_height_max = 0.1;
-
286
-
287 grape_color = make_RGBcolor(0.18,0.2,0.25);
-
288
-
289 grape_subdivisions = 8;
-
290
-
291 plant_spacing = 2;
-
292
-
293 row_spacing = 2;
-
294
-
295 plant_count = make_int2(3,3);
-
296
-
297 canopy_origin = make_vec3(0,0,0);
-
298
-
299 canopy_rotation = 0;
-
300
-
301}
-
-
302
-
-
303WhiteSpruceCanopyParameters::WhiteSpruceCanopyParameters(){
-
304
-
305 needle_width = 0.0005;
-
306
-
307 needle_length = 0.05;
-
308
-
309 needle_color = make_RGBcolor(0.67,0.9,0.56);
-
310
-
311 needle_subdivisions = make_int2(1,1);
-
312
-
313 wood_texture_file = "plugins/canopygenerator/textures/wood.jpg";
-
314
-
315 wood_subdivisions = 10;
-
316
-
317 trunk_height = 10;
-
318
-
319 trunk_radius = 0.15;
-
320
-
321 base_height = 2.0;
-
322
-
323 crown_radius = 0.65;
-
324
-
325 shoot_radius = 0.02;
-
326
-
327 level_spacing = 0.35;
-
328
-
329 branches_per_level = 8;
+
+
261void ConicalCrownsCanopyParameters::readParametersFromXML(const pugi::xml_node canopy_node){
+
262 BaseCanopyParameters::readParametersFromXML(canopy_node);
+
263
+
264 // ----- leaf size ------//
+
265 vec2 new_leaf_size = XMLloadvec2(canopy_node, "leaf_size");
+
266 if (new_leaf_size.x != nullvalue_f && new_leaf_size.y != nullvalue_f) {
+
267 leaf_size = new_leaf_size;
+
268 }
+
269
+
270 // ----- leaf subdivisions ------//
+
271 int2 new_leaf_subdivisions = XMLloadint2(canopy_node, "leaf_subdivisions");
+
272 if (new_leaf_subdivisions.x != nullvalue_i && new_leaf_subdivisions.y != nullvalue_i) {
+
273 leaf_subdivisions = new_leaf_subdivisions;
+
274 }
+
275
+
276 // ----- leaf color ------//
+
277 RGBAcolor new_leaf_color = XMLloadrgba(canopy_node, "leaf_color");
+
278 if (new_leaf_color.a != 0) {
+
279 leaf_color = make_RGBcolor(new_leaf_color.r, new_leaf_color.g, new_leaf_color.b);
+
280 }
+
281
+
282 // ----- leaf texture file ------//
+
283 std::string new_leaf_texture_file = XMLloadstring(canopy_node, "leaf_texture_file");
+
284 if (new_leaf_texture_file != nullvalue_s) {
+
285 leaf_texture_file = new_leaf_texture_file;
+
286 }
+
287
+
288 // ----- leaf angle distribution ------//
+
289 std::string new_leaf_angle_distribution = XMLloadstring(canopy_node, "leaf_angle_distribution");
+
290 if (new_leaf_angle_distribution != nullvalue_s) {
+
291 leaf_angle_distribution = new_leaf_angle_distribution;
+
292 }
+
293
+
294 // ----- leaf area density ------//
+
295 float new_leaf_area_density = XMLloadfloat(canopy_node, "leaf_area_density");
+
296 if (new_leaf_area_density != nullvalue_f) {
+
297 leaf_area_density = new_leaf_area_density;
+
298 }
+
299
+
300 // ----- crown radius ------//
+
301 float new_crown_radius = XMLloadfloat(canopy_node, "crown_radius");
+
302 if (new_crown_radius != nullvalue_f) {
+
303 crown_radius = new_crown_radius;
+
304 }
+
305
+
306 // ----- crown height ------//
+
307 float new_crown_height = XMLloadfloat(canopy_node, "crown_height");
+
308 if (new_crown_height != nullvalue_f) {
+
309 crown_height = new_crown_height;
+
310 }
+
311
+
312 // ----- canopy configuration ------//
+
313 std::string new_canopy_configuration = XMLloadstring(canopy_node, "canopy_configuration");
+
314 if (new_canopy_configuration != nullvalue_s) {
+
315 canopy_configuration = new_canopy_configuration;
+
316 }
+
317
+
318 // ----- plant spacing ------//
+
319 vec2 new_plant_spacing = XMLloadvec2(canopy_node, "plant_spacing");
+
320 if (new_plant_spacing.x != nullvalue_f && new_plant_spacing.y != nullvalue_f) {
+
321 plant_spacing = new_plant_spacing;
+
322 }
+
323
+
324 // ----- plant count ------//
+
325 int2 new_plant_count = XMLloadint2(canopy_node, "plant_count");
+
326 if (new_plant_count.x != nullvalue_i && new_plant_count.y != nullvalue_i) {
+
327 plant_count = new_plant_count;
+
328 }
+
329}
+
330
-
331 shoot_angle = 0.3*M_PI;
-
332
-
333 canopy_configuration = "random";
+
+
331void ConicalCrownsCanopyParameters::buildPlant(CanopyGenerator& canopy_generator, helios::vec3 origin){
+
332 std::cout << "ConicalCrownsCanopyParameters::buildPlant: Cannot build a single plant of canopy type ConicalCrownsCanopyParameters" << std::endl;
+
333}
+
334
-
335 plant_spacing = make_vec2(10,10);
-
336
-
337 plant_count = make_int2(3,3);
+
+
335void ConicalCrownsCanopyParameters::buildCanopy(CanopyGenerator& canopy_generator){
+
336 canopy_generator.buildCanopy(*this);
+
337}
+
338
-
339 canopy_origin = make_vec3(0,0,0);
+
+
339BaseGrapeVineParameters::BaseGrapeVineParameters() : BaseCanopyParameters(){
340
-
341 canopy_rotation = 0;
+
341 leaf_texture_file = "plugins/canopygenerator/textures/GrapeLeaf.png";
342
-
343}
-
+
343 wood_texture_file = "plugins/canopygenerator/textures/wood.jpg";
344
-
-
345TomatoParameters::TomatoParameters(){
-
346
-
347 leaf_length = 0.2;
-
348
-
349 leaf_subdivisions = make_int2(4,3);
-
350
-
351 leaf_texture_file = "plugins/canopygenerator/textures/TomatoLeaf_big.png";
-
352
-
353 shoot_color = make_RGBcolor(0.35,0.45,0.2);
+
345 leaf_width = 0.18;
+
346 leaf_width_spread = 0;
+
347
+
348 leaf_subdivisions = make_int2(1,1);
+
349
+
350 leaf_spacing_fraction_spread = 0;
+
351
+
352 wood_subdivisions = 10;
+
353 wood_subdivisions_spread = 0;
354
-
355 shoot_subdivisions = 10;
+
355 trunk_height_spread = 0;
356
-
357 plant_height = 1.;
-
358
-
359 fruit_radius = 0.03;
+
357 cordon_length_spread = 0;
+
358 cordon_height_spread = 0;
+
359 cordon_radius_spread = 0;
360
-
361 fruit_color = make_RGBcolor(0.7,0.28,0.2);
-
362
-
363 fruit_subdivisions = 8;
+
361 shoot_length_spread = 0;
+
362 shoot_radius_spread = 0;
+
363 shoots_per_cordon_spread = 0;
364
-
365 plant_spacing = 2;
+
365 grape_color = make_RGBcolor(0.18,0.2,0.25);
366
-
367 row_spacing = 2;
+
367 grape_radius_spread = 0;
368
-
369 plant_count = make_int2(3,3);
-
370
-
371 canopy_origin = make_vec3(0,0,0);
-
372
-
373 canopy_rotation = 0;
-
374
-
375}
-
-
376
-
-
377StrawberryParameters::StrawberryParameters(){
-
378
-
379 leaf_length = 0.1;
-
380
-
381 leaf_subdivisions = make_int2(4,4);
-
382
-
383 leaf_texture_file = "plugins/canopygenerator/textures/StrawberryLeaf.png";
+
369 cluster_radius_spread = 0;
+
370 cluster_height_max_spread = 0;
+
371
+
372 grape_subdivisions_spread = 0;
+
373
+
374 plant_count = make_int2(3,3);
+
375
+
376 canopy_rotation_spread = 0;
+
377
+
378 plant_spacing_spread = 0;
+
379
+
380 row_spacing_spread = 0;
+
381
+
382 dead_probability = 0;
+
383 missing_plant_probability = 0;
384
-
385 stem_color = make_RGBcolor(0.35,0.45,0.2);
+
385}
+
386
-
387 stem_subdivisions = 10;
-
388
-
389 stems_per_plant = 50;
+
+
387BaseGrapeVineParameters::BaseGrapeVineParameters(const pugi::xml_node canopy_node) : BaseGrapeVineParameters(){
+
388 readParametersFromXML(canopy_node);
+
389}
+
390
-
391 stem_radius = 0.005;
-
392
-
393 plant_height = 0.4;
-
394
-
395 fruit_radius = 0.025;
-
396
-
397 fruit_texture_file = "plugins/canopygenerator/textures/StrawberryTexture.jpg";
+
+
391void BaseGrapeVineParameters::readParametersFromXML(const pugi::xml_node canopy_node){
+
392 BaseCanopyParameters::readParametersFromXML(canopy_node);
+
393
+
394 float new_leaf_width = XMLloadfloat(canopy_node, "leaf_width");
+
395 if (new_leaf_width != nullvalue_f) {
+
396 leaf_width = new_leaf_width;
+
397 }
398
-
399 fruit_subdivisions = 12;
-
400
-
401 clusters_per_stem = 0.6;
-
402
-
403 plant_spacing = 0.5;
-
404
-
405 row_spacing = 1.5;
-
406
-
407 plant_count = make_int2(4,2);
+
399 float new_leaf_width_spread = XMLloadfloat(canopy_node, "leaf_width_spread");
+
400 if (new_leaf_width_spread != nullvalue_f) {
+
401 leaf_width_spread = new_leaf_width_spread;
+
402 }
+
403
+
404 int2 new_leaf_subdivisions = XMLloadint2(canopy_node, "leaf_subdivisions");
+
405 if (new_leaf_subdivisions.x != nullvalue_i && new_leaf_subdivisions.y != nullvalue_i) {
+
406 leaf_subdivisions = new_leaf_subdivisions;
+
407 }
408
-
409 canopy_origin = make_vec3(0,0,0);
-
410
-
411 canopy_rotation = 0;
-
412
-
413}
-
-
414
-
-
415WalnutCanopyParameters::WalnutCanopyParameters(){
-
416
-
417 leaf_length = 0.15;
+
409 std::string new_leaf_texture_file = XMLloadstring(canopy_node, "leaf_texture_file");
+
410 if ( new_leaf_texture_file != nullvalue_s ) {
+
411 leaf_texture_file = new_leaf_texture_file;
+
412 }
+
413
+
414 std::string new_wood_texture_file = XMLloadstring(canopy_node, "wood_texture_file");
+
415 if ( new_wood_texture_file != nullvalue_s ) {
+
416 wood_texture_file = new_wood_texture_file;
+
417 }
418
-
419 leaf_subdivisions = make_int2(1,2);
-
420
-
421 leaf_texture_file = "plugins/canopygenerator/textures/WalnutLeaf.png";
-
422
-
423 wood_texture_file = "plugins/canopygenerator/textures/wood.jpg";
-
424
-
425 wood_subdivisions = 10;
-
426
-
427 trunk_radius = 0.15;
+
419 int new_wood_subdivisions = XMLloadint(canopy_node, "wood_subdivisions");
+
420 if ( new_wood_subdivisions != nullvalue_i) {
+
421 wood_subdivisions = new_wood_subdivisions;
+
422 }
+
423
+
424 int new_wood_subdivisions_spread = XMLloadint(canopy_node, "wood_subdivisions_spread");
+
425 if ( new_wood_subdivisions_spread != nullvalue_i) {
+
426 wood_subdivisions_spread = new_wood_subdivisions_spread;
+
427 }
428
-
429 trunk_height = 4.f;
-
430
-
431 branch_length = make_vec3(4,0.75,0.75);
-
432
-
433 fruit_radius = 0.04;
-
434
-
435 fruit_texture_file = "plugins/canopygenerator/textures/WalnutTexture.png";
-
436
-
437 fruit_subdivisions = 16;
+
429 float h = XMLloadfloat(canopy_node, "trunk_height");
+
430 if (h != nullvalue_f) {
+
431 trunk_height = h;
+
432 }
+
433
+
434 float new_trunk_height_spread = XMLloadfloat(canopy_node, "trunk_height_spread");
+
435 if (new_trunk_height_spread != nullvalue_f) {
+
436 trunk_height_spread = new_trunk_height_spread;
+
437 }
438
-
439 plant_spacing = 6;
-
440
-
441 row_spacing = 8;
-
442
-
443 plant_count = make_int2(4,2);
-
444
-
445 canopy_origin = make_vec3(0,0,0);
-
446
-
447 canopy_rotation = 0;
+
439 float r = XMLloadfloat(canopy_node, "trunk_radius");
+
440 if (r != nullvalue_f) {
+
441 trunk_radius = r;
+
442 }
+
443
+
444 float new_trunk_radius_spread = XMLloadfloat(canopy_node, "trunk_radius_spread");
+
445 if (new_trunk_radius_spread != nullvalue_f) {
+
446 trunk_radius_spread = new_trunk_radius_spread;
+
447 }
448
-
449}
-
-
450
-
-
451SorghumCanopyParameters::SorghumCanopyParameters(){
-
452 sorghum_stage = 5;
+
449 float new_cordon_length = XMLloadfloat(canopy_node, "cordon_length");
+
450 if (new_cordon_length != nullvalue_f) {
+
451 cordon_length = new_cordon_length;
+
452 }
453
-
454 // stage 1
-
455 s1_stem_length = 0.04;
-
456
-
457 s1_stem_radius = 0.003;
+
454 float new_cordon_length_spread = XMLloadfloat(canopy_node, "cordon_length_spread");
+
455 if (new_cordon_length_spread != nullvalue_f) {
+
456 cordon_length_spread = new_cordon_length_spread;
+
457 }
458
-
459 s1_stem_subdivisions = 10;
-
460
-
461 s1_leaf_size1 = make_vec2(0.14,0.012);
-
462
-
463 s1_leaf_size2 = make_vec2(0.12,0.012);
-
464
-
465 s1_leaf_size3 = make_vec2(0.06,0.008);
-
466
-
467 s1_leaf1_angle = 50;
+
459 float ch = XMLloadfloat(canopy_node, "cordon_height");
+
460 if (ch != nullvalue_f) {
+
461 cordon_height = ch;
+
462 }
+
463
+
464 float new_cordon_height_spread = XMLloadfloat(canopy_node, "cordon_height_spread");
+
465 if (new_cordon_height_spread != nullvalue_f) {
+
466 cordon_height_spread = new_cordon_height_spread;
+
467 }
468
-
469 s1_leaf2_angle = 50;
-
470
-
471 s1_leaf3_angle = 50;
-
472
-
473 s1_leaf_subdivisions = make_int2(20,2);
-
474
-
475 s1_leaf_texture_file = "plugins/canopygenerator/textures/s1_Sorghum_leaf.png";
-
476
-
477
-
478 // stage 2
-
479 s2_stem_length = 0.2;
-
480
-
481 s2_stem_radius = 0.003;
-
482
-
483 s2_stem_subdivisions = 10;
-
484
-
485 s2_leaf_size1 = make_vec2(0.25,0.02);
-
486
-
487 s2_leaf_size2 = make_vec2(0.14,0.02);
+
469 float cr = XMLloadfloat(canopy_node, "cordon_radius");
+
470 if (cr != nullvalue_f) {
+
471 cordon_radius = cr;
+
472 }
+
473
+
474 float new_cordon_radius_spread = XMLloadfloat(canopy_node, "cordon_radius_spread");
+
475 if (new_cordon_radius_spread != nullvalue_f) {
+
476 cordon_radius_spread = new_cordon_radius_spread;
+
477 }
+
478
+
479 float sl = XMLloadfloat(canopy_node, "shoot_length");
+
480 if (sl != nullvalue_f) {
+
481 shoot_length = sl;
+
482 }
+
483
+
484 float new_shoot_length_spread = XMLloadfloat(canopy_node, "shoot_length_spread");
+
485 if (new_shoot_length_spread != nullvalue_f) {
+
486 shoot_length_spread = new_shoot_length_spread;
+
487 }
488
-
489 s2_leaf_size3 = make_vec2(0.2,0.015);
-
490
-
491 s2_leaf_size4 = make_vec2(0.12,0.012);
-
492
-
493 s2_leaf_size5 = make_vec2(0.08,0.01);
-
494
-
495 s2_leaf1_angle = 25;
-
496
-
497 s2_leaf2_angle = 50;
+
489 float sr = XMLloadfloat(canopy_node, "shoot_radius");
+
490 if (sr != nullvalue_f) {
+
491 shoot_radius = sr;
+
492 }
+
493
+
494 float new_shoot_radius_spread = XMLloadfloat(canopy_node, "shoot_radius_spread");
+
495 if (new_shoot_radius_spread != nullvalue_f) {
+
496 shoot_radius_spread = new_shoot_radius_spread;
+
497 }
498
-
499 s2_leaf3_angle = 15;
-
500
-
501 s2_leaf4_angle = 25;
-
502
-
503 s2_leaf5_angle = 10;
-
504
-
505 s2_leaf_subdivisions = make_int2(30,2);
-
506
-
507 s2_leaf_texture_file = "plugins/canopygenerator/textures/s2_Sorghum_leaf.png";
+
499 int spc = XMLloadint(canopy_node, "shoots_per_cordon");
+
500 if (spc != nullvalue_i) {
+
501 shoots_per_cordon = uint(spc);
+
502 }
+
503
+
504 int new_shoots_per_cordon_spread = XMLloadint(canopy_node, "shoots_per_cordon_spread");
+
505 if (new_shoots_per_cordon_spread != nullvalue_i) {
+
506 shoots_per_cordon_spread = uint(new_shoots_per_cordon_spread);
+
507 }
508
-
509 // stage 3
-
510 s3_stem_length = 1.2;
-
511
-
512 s3_stem_radius = 0.01;
+
509 float lsf = XMLloadfloat(canopy_node, "leaf_spacing_fraction");
+
510 if (lsf != nullvalue_f) {
+
511 leaf_spacing_fraction = lsf;
+
512 }
513
-
514 s3_stem_subdivisions = 10;
-
515
-
516 s3_leaf_size = make_vec2(0.8,0.08);
-
517
-
518 s3_leaf_subdivisions = make_int2(30,2);
-
519
-
520 s3_number_of_leaves = 15;
-
521
-
522 s3_mean_leaf_angle = 45;
+
514 float new_leaf_spacing_fraction_spread = XMLloadfloat(canopy_node, "leaf_spacing_fraction_spread");
+
515 if (new_leaf_spacing_fraction_spread != nullvalue_f) {
+
516 leaf_spacing_fraction_spread = new_leaf_spacing_fraction_spread;
+
517 }
+
518
+
519 float gr = XMLloadfloat(canopy_node, "grape_radius");
+
520 if (gr != nullvalue_f) {
+
521 grape_radius = gr;
+
522 }
523
-
524 s3_leaf_texture_file = "plugins/canopygenerator/textures/s3_Sorghum_leaf.png";
-
525
-
526 // stage 4
-
527 s4_stem_length = 1.6;
+
524 float new_grape_radius_spread = XMLloadfloat(canopy_node, "grape_radius_spread");
+
525 if (new_grape_radius_spread != nullvalue_f) {
+
526 grape_radius_spread = new_grape_radius_spread;
+
527 }
528
-
529 s4_stem_radius = 0.01;
-
530
-
531 s4_stem_subdivisions = 10;
-
532
-
533 s4_panicle_size = make_vec2(0.2,0.06);
-
534
-
535 s4_panicle_subdivisions = 5;
-
536
-
537 s4_seed_texture_file = "plugins/canopygenerator/textures/s4_Sorghum_seed.png";
+
529 float clr = XMLloadfloat(canopy_node, "cluster_radius");
+
530 if (clr != nullvalue_f) {
+
531 cluster_radius = clr;
+
532 }
+
533
+
534 float new_cluster_radius_spread = XMLloadfloat(canopy_node, "cluster_radius_spread");
+
535 if (new_cluster_radius_spread != nullvalue_f) {
+
536 cluster_radius_spread = new_cluster_radius_spread;
+
537 }
538
-
539 s4_leaf_size = make_vec2(0.8,0.08);
-
540
-
541 s4_leaf_subdivisions = make_int2(30,2);
-
542
-
543 s4_number_of_leaves = 15;
-
544
-
545 s4_mean_leaf_angle = 40;
-
546
-
547 s4_leaf_texture_file = "plugins/canopygenerator/textures/s4_Sorghum_leaf.png";
+
539 float clhm = XMLloadfloat(canopy_node, "cluster_height_max");
+
540 if (clhm != nullvalue_f) {
+
541 cluster_height_max = clhm;
+
542 }
+
543
+
544 float new_cluster_height_max_spread = XMLloadfloat(canopy_node, "cluster_height_max_spread");
+
545 if (new_cluster_height_max_spread != nullvalue_f) {
+
546 cluster_height_max_spread = new_cluster_height_max_spread;
+
547 }
548
-
549 // stage 5
-
550 s5_stem_length = 2.5;
-
551
-
552 s5_stem_radius = 0.01;
+
549 RGBAcolor new_grape_color = XMLloadrgba(canopy_node, "grape_color");
+
550 if ( new_grape_color.a != 0 ) {
+
551 grape_color = make_RGBcolor(new_grape_color.r, new_grape_color.g, new_grape_color.b);
+
552 }
553
-
554 s5_stem_bend = 0.15;
-
555
-
556 s5_stem_subdivisions = 10;
-
557
-
558 s5_panicle_size = make_vec2(0.3,0.08);
-
559
-
560 s5_panicle_subdivisions = 5;
-
561
-
562 s5_seed_texture_file = "plugins/canopygenerator/textures/s5_Sorghum_seed.png";
+
554 int new_grape_subdivisions = XMLloadint(canopy_node, "grape_subdivisions");
+
555 if (new_grape_subdivisions != nullvalue_i) {
+
556 grape_subdivisions = uint(new_grape_subdivisions);
+
557 }
+
558
+
559 int new_grape_subdivisions_spread = XMLloadint(canopy_node, "grape_subdivisions_spread");
+
560 if (new_grape_subdivisions_spread != nullvalue_i) {
+
561 grape_subdivisions_spread = uint(new_grape_subdivisions_spread);
+
562 }
563
-
564 s5_leaf_size = make_vec2(0.9,0.125);
-
565
-
566 s5_leaf_subdivisions = make_int2(30,2);
-
567
-
568 s5_number_of_leaves = 24;
-
569
-
570 s5_mean_leaf_angle = 20; // std = 10 degrees
-
571
-
572 s5_leaf_texture_file = "plugins/canopygenerator/textures/s5_Sorghum_leaf.png";
+
564 float new_plant_spacing = XMLloadfloat(canopy_node, "plant_spacing");
+
565 if (new_plant_spacing != nullvalue_f) {
+
566 plant_spacing = new_plant_spacing;
+
567 }
+
568
+
569 float new_plant_spacing_spread = XMLloadfloat(canopy_node, "plant_spacing_spread");
+
570 if (new_plant_spacing_spread != nullvalue_f) {
+
571 plant_spacing_spread = new_plant_spacing_spread;
+
572 }
573
-
574 // Canopy
-
575 plant_spacing = 0.45;
-
576
-
577 row_spacing = 0.45;
+
574 float new_row_spacing = XMLloadfloat(canopy_node, "row_spacing");
+
575 if (new_row_spacing != nullvalue_f) {
+
576 row_spacing = new_row_spacing;
+
577 }
578
-
579 plant_count = make_int2(10 ,10);
-
580
-
581 canopy_origin = make_vec3(0,0,0);
-
582}
-
+
579 float new_row_spacing_spread = XMLloadfloat(canopy_node, "row_spacing_spread");
+
580 if (new_row_spacing_spread != nullvalue_f) {
+
581 row_spacing_spread = new_row_spacing_spread;
+
582 }
583
-
-
584BeanParameters::BeanParameters() {
-
585
-
586 leaf_length = 0.075;
-
587
-
588 leaf_subdivisions = make_int2(6, 4);
-
589
-
590 leaf_texture_file = "plugins/canopygenerator/textures/BeanLeaf.png";
-
591
-
592 shoot_color = make_RGBcolor(0.6471, 0.7333, 0.1176);
-
593
-
594 shoot_subdivisions = 10;
-
595
-
596 stem_radius = 0.004;
-
597
-
598 stem_length = 0.075;
-
599
-
600 leaflet_length = 0.075;
-
601
-
602 pod_length = 0; //pods not supported yet
-
603
-
604 pod_color = make_RGBcolor(0.7, 0.28, 0.2);
-
605
-
606 pod_subdivisions = 8;
-
607
-
608 plant_spacing = 0.15;
-
609
-
610 row_spacing = 0.6;
-
611
-
612 plant_count = make_int2(3, 3);
-
613
-
614 germination_probability = 1.f;
-
615
-
616 canopy_origin = make_vec3(0, 0, 0);
-
617
-
618 canopy_rotation = 0;
-
619
-
620}
-
-
621
-
-
622 CanopyGenerator::CanopyGenerator( helios::Context* m_context ){
-
623
-
624 context = m_context;
-
625
-
626 //seed the random number generator
-
627 unsigned seed = std::chrono::system_clock::now().time_since_epoch().count();
-
628 generator.seed(seed);
-
629
-
630 printmessages = true;
-
631
-
632 enable_element_labels = false;
-
633
-
634}
-
-
635
-
-
636int CanopyGenerator::selfTest(){
-
637
-
638 std::cout << "Running canopy generator plug-in self-test..." << std::endl;
-
639
-
640 Context context_test;
-
641
-
642 std::cout << "Generating default homogeneous canopy..." << std::flush;
-
643
-
644 CanopyGenerator canopygenerator_0(&context_test);
-
645 canopygenerator_0.disableMessages();
-
646 HomogeneousCanopyParameters params_0;
-
647 canopygenerator_0.buildCanopy(params_0);
-
648 context_test.deletePrimitive(context_test.getAllUUIDs());
-
649
-
650 std::cout << "done." << std::endl;
-
651
-
652 std::cout << "Generating default spherical crowns canopy..." << std::flush;
-
653
-
654 CanopyGenerator canopygenerator_1(&context_test);
-
655 canopygenerator_1.disableMessages();
-
656 SphericalCrownsCanopyParameters params_1;
-
657 canopygenerator_1.buildCanopy(params_1);
-
658 context_test.deletePrimitive(context_test.getAllUUIDs());
-
659
-
660 std::cout << "done." << std::endl;
-
661
-
662 std::cout << "Generating default VSP grapevine canopy..." << std::flush;
-
663
-
664 CanopyGenerator canopygenerator_2(&context_test);
-
665 canopygenerator_2.disableMessages();
-
666 VSPGrapevineParameters params_2;
-
667 params_2.grape_radius = 0;
-
668 canopygenerator_2.buildCanopy(params_2);
-
669 context_test.deletePrimitive(context_test.getAllUUIDs());
+
584 int2 new_plant_count = XMLloadint2(canopy_node, "plant_count");
+
585 if (new_plant_count.x != nullvalue_i && new_plant_count.y != nullvalue_i) {
+
586 plant_count = new_plant_count;
+
587 }
+
588
+
589 float new_dead_probability = XMLloadfloat(canopy_node, "dead_probability");
+
590 if (new_dead_probability != nullvalue_f) {
+
591 if (new_dead_probability < 0 || new_dead_probability > 1)
+
592 std::cout << "BaseGrapeVineParameters::readParametersFromXML: dead_probability value must be between 0 and 1" << std::endl;
+
593 else
+
594 dead_probability = new_dead_probability;
+
595 }
+
596
+
597 float new_missing_plant_probability = XMLloadfloat(canopy_node, "missing_plant_probability");
+
598 if (new_missing_plant_probability != nullvalue_f) {
+
599 if (new_missing_plant_probability < 0 || new_missing_plant_probability > 1)
+
600 std::cout << "BaseGrapeVineParameters::readParametersFromXML: missing_plant_probability value must be between 0 and 1" << std::endl;
+
601 else
+
602 missing_plant_probability = new_missing_plant_probability;
+
603 }
+
604
+
605 float new_canopy_rotation_spread = XMLloadfloat(canopy_node, "canopy_rotation_spread");
+
606 if (new_canopy_rotation_spread != nullvalue_f) {
+
607 canopy_rotation_spread = new_canopy_rotation_spread;
+
608 }
+
609}
+
+
610
+
+
611void BaseGrapeVineParameters::buildPlant(CanopyGenerator& canopy_generator, helios::vec3 origin){
+
612 std::cout << "BaseGrapeVineParameters::buildPlant: Cannot build a single plant of canopy type BaseGrapeVineParameters" << std::endl;
+
613}
+
+
614
+
+
615void BaseGrapeVineParameters::buildCanopy(CanopyGenerator& canopy_generator){
+
616 std::cout << "BaseGrapeVineParameters::buildPlant: Cannot build a canopy of type BaseGrapeVineParameters" << std::endl;
+
617}
+
+
618
+
+
619VSPGrapevineParameters::VSPGrapevineParameters() : BaseGrapeVineParameters(){
+
620
+
621 trunk_height = 0.7;
+
622
+
623 trunk_radius = 0.05;
+
624
+
625 cordon_height = 0.9;
+
626
+
627 cordon_radius = 0.02;
+
628
+
629 shoot_length = 0.9;
+
630
+
631 shoot_radius = 0.005;
+
632
+
633 shoots_per_cordon = 10;
+
634
+
635 leaf_spacing_fraction = 0.5;
+
636
+
637 grape_radius = 0.0075;
+
638
+
639 cluster_radius = 0.03;
+
640
+
641 cluster_height_max = 0.15;
+
642
+
643 grape_subdivisions = 8;
+
644
+
645 plant_spacing = 2;
+
646
+
647 cordon_length = 0.5 * plant_spacing;
+
648
+
649 row_spacing = 2;
+
650
+
651}
+
+
652
+
+
653VSPGrapevineParameters::VSPGrapevineParameters(const pugi::xml_node canopy_node) : VSPGrapevineParameters(){
+
654 readParametersFromXML(canopy_node);
+
655}
+
+
656
+
+
657void VSPGrapevineParameters::readParametersFromXML(const pugi::xml_node canopy_node){
+
658 BaseGrapeVineParameters::readParametersFromXML(canopy_node);
+
659}
+
+
660
+
+
661void VSPGrapevineParameters::buildPlant(CanopyGenerator& canopy_generator, helios::vec3 origin){
+
662 canopy_generator.grapevineVSP(*this, origin);
+
663}
+
+
664
+
+
665void VSPGrapevineParameters::buildCanopy(CanopyGenerator& canopy_generator){
+
666 canopy_generator.buildCanopy(*this);
+
667}
+
+
668
+
+
669SplitGrapevineParameters::SplitGrapevineParameters() : BaseGrapeVineParameters(){
670
-
671 std::cout << "done." << std::endl;
+
671 trunk_height = 1.3;
672
-
673 std::cout << "Generating default split trellis grapevine canopy..." << std::flush;
+
673 trunk_radius = 0.05;
674
-
675 CanopyGenerator canopygenerator_3(&context_test);
-
676 canopygenerator_3.disableMessages();
-
677 SplitGrapevineParameters params_3;
-
678 params_3.grape_radius = 0;
-
679 canopygenerator_3.buildCanopy(params_3);
-
680 context_test.deletePrimitive(context_test.getAllUUIDs());
+
675 cordon_height = 1.5;
+
676
+
677 cordon_radius = 0.02;
+
678
+
679 cordon_spacing = 1.f;
+
680 cordon_spacing_spread = 0;
681
-
682 std::cout << "done." << std::endl;
+
682 shoot_length = 1.2;
683
-
684 std::cout << "Generating default unilateral trellis grapevine canopy..." << std::flush;
+
684 shoot_radius = 0.0025;
685
-
686 CanopyGenerator canopygenerator_4(&context_test);
-
687 canopygenerator_4.disableMessages();
-
688 UnilateralGrapevineParameters params_4;
-
689 params_4.grape_radius = 0;
-
690 canopygenerator_4.buildCanopy(params_4);
-
691 context_test.deletePrimitive(context_test.getAllUUIDs());
-
692
-
693 std::cout << "done." << std::endl;
-
694
-
695 std::cout << "Generating default goblet trellis grapevine canopy..." << std::flush;
-
696
-
697 CanopyGenerator canopygenerator_5(&context_test);
-
698 canopygenerator_5.disableMessages();
-
699 GobletGrapevineParameters params_5;
-
700 params_5.grape_radius = 0;
-
701 canopygenerator_5.buildCanopy(params_5);
-
702 context_test.deletePrimitive(context_test.getAllUUIDs());
+
686 shoots_per_cordon = 10;
+
687
+
688 shoot_angle_tip = 0.4*M_PI;
+
689 shoot_angle_tip_spread = 0;
+
690
+
691 shoot_angle_base = 0.;
+
692 shoot_angle_base_spread = 0;
+
693
+
694 leaf_spacing_fraction = 0.6;
+
695
+
696 grape_radius = 0.0075;
+
697
+
698 cluster_radius = 0.03;
+
699
+
700 cluster_height_max = 0.1;
+
701
+
702 grape_subdivisions = 8;
703
-
704 std::cout << "done." << std::endl;
+
704 plant_spacing = 2;
705
-
706 std::cout << "Generating default strawberry canopy..." << std::flush;
+
706 cordon_length = 0.5 * plant_spacing;
707
-
708 CanopyGenerator canopygenerator_7(&context_test);
-
709 canopygenerator_7.disableMessages();
-
710 StrawberryParameters params_7;
-
711 canopygenerator_7.buildCanopy(params_7);
-
712 context_test.deletePrimitive(context_test.getAllUUIDs());
-
713
-
714 std::cout << "done." << std::endl;
+
708 row_spacing = 4;
+
709
+
710}
+
+
711
+
+
712SplitGrapevineParameters::SplitGrapevineParameters(const pugi::xml_node canopy_node) : SplitGrapevineParameters(){
+
713 readParametersFromXML(canopy_node);
+
714}
+
715
-
716 std::cout << "Generating default walnut tree canopy (minus nuts)..." << std::flush;
-
717
-
718 CanopyGenerator canopygenerator_8(&context_test);
-
719 canopygenerator_8.disableMessages();
-
720 WalnutCanopyParameters params_8;
-
721 params_8.fruit_radius = 0.f;
-
722 canopygenerator_8.buildCanopy(params_8);
-
723 context_test.deletePrimitive(context_test.getAllUUIDs());
-
724
-
725 std::cout << "done." << std::endl;
-
726
-
727 std::cout << "Generating default sorghum plant canopy..." << std::flush;
+
+
716void SplitGrapevineParameters::readParametersFromXML(const pugi::xml_node canopy_node){
+
717 BaseGrapeVineParameters::readParametersFromXML(canopy_node);
+
718
+
719 float cs = XMLloadfloat(canopy_node, "cordon_spacing");
+
720 if (cs != nullvalue_f) {
+
721 cordon_spacing = cs;
+
722 }
+
723
+
724 float sat = XMLloadfloat( canopy_node, "shoot_angle_tip" );
+
725 if( sat != nullvalue_f ){
+
726 shoot_angle_tip = sat;
+
727 }
728
-
729 CanopyGenerator canopygenerator_9(&context_test);
-
730 canopygenerator_9.disableMessages();
-
731 SorghumCanopyParameters params_9;
-
732 canopygenerator_9.buildCanopy(params_9);
-
733 context_test.deletePrimitive( context_test.getAllUUIDs() );
+
729 float sab = XMLloadfloat( canopy_node, "shoot_angle_base" );
+
730 if( sab != nullvalue_f ){
+
731 shoot_angle_base = sab;
+
732 }
+
733}
+
734
-
735 std::cout << "done." << std::endl;
-
736
-
737 std::cout << "Generating homogeneous canopy with randomly deleted primitives..." << std::flush;
+
+
735void SplitGrapevineParameters::buildPlant(CanopyGenerator& canopy_generator, helios::vec3 origin){
+
736 canopy_generator.grapevineSplit(*this, origin);
+
737}
+
738
-
739 CanopyGenerator canopygenerator_6(&context_test);
-
740 canopygenerator_6.disableMessages();
-
741 HomogeneousCanopyParameters params_6;
-
742 canopygenerator_6.buildCanopy(params_6);
-
743
-
744 std::vector<uint> UUIDs_leaves = flatten( canopygenerator_6.getLeafUUIDs(0) );
-
745
-
746 context_test.deletePrimitive(UUIDs_leaves.at(0));
-
747 context_test.deletePrimitive(UUIDs_leaves.at(11));
-
748 context_test.deletePrimitive(UUIDs_leaves.at(23));
-
749 context_test.deletePrimitive(UUIDs_leaves.back());
+
+
739void SplitGrapevineParameters::buildCanopy(CanopyGenerator& canopy_generator){
+
740 canopy_generator.buildCanopy(*this);
+
741}
+
+
742
+
+
743UnilateralGrapevineParameters::UnilateralGrapevineParameters() : BaseGrapeVineParameters(){
+
744
+
745 trunk_height = 0.7;
+
746
+
747 trunk_radius = 0.05;
+
748
+
749 cordon_height = 0.9;
750
-
751 UUIDs_leaves = flatten( canopygenerator_6.getLeafUUIDs(0) );
+
751 cordon_radius = 0.04;
752
-
753 bool fail_flag = false;
-
754 for( uint UUID : UUIDs_leaves ){
-
755 if( !context_test.doesPrimitiveExist( UUID ) ){
-
756 fail_flag = true;
-
757 }
-
758 }
-
759
-
760 std::vector<uint> UUIDs_all = canopygenerator_6.getAllUUIDs(0);
-
761
-
762 fail_flag = false;
-
763 for( uint p : UUIDs_all ){
-
764 if( !context_test.doesPrimitiveExist( p ) ){
-
765 fail_flag = true;
-
766 }
-
767 }
+
753 shoot_length = 0.9;
+
754
+
755 shoot_radius = 0.0025;
+
756
+
757 shoots_per_cordon = 20;
+
758
+
759 leaf_spacing_fraction = 0.6;
+
760
+
761 grape_radius = 0.0075;
+
762
+
763 cluster_radius = 0.03;
+
764
+
765 cluster_height_max = 0.1;
+
766
+
767 grape_subdivisions = 8;
768
-
769 context_test.deletePrimitive(context_test.getAllUUIDs());
+
769 plant_spacing = 1.5;
770
-
771 std::cout << "done." << std::endl;
+
771 cordon_length = 0.5 * plant_spacing;
772
-
773 if( fail_flag ){
-
774 std::cout << "failed." << std::endl;
-
775 return 1;
-
776 }else{
-
777 std::cout << "passed." << std::endl;
-
778 return 0;
-
779 }
+
773 row_spacing = 2;
+
774
+
775}
+
+
776
+
780
-
781}
+
+
781void UnilateralGrapevineParameters::readParametersFromXML(const pugi::xml_node canopy_node){
+
782 BaseGrapeVineParameters::readParametersFromXML(canopy_node);
+
783}
-
782
-
-
783void CanopyGenerator::loadXML( const char* filename ){
784
-
785 if( printmessages ){
-
786 std::cout << "Reading XML file: " << filename << "..." << std::flush;
-
787 }
+
+
785void UnilateralGrapevineParameters::buildPlant(CanopyGenerator& canopy_generator, helios::vec3 origin){
+
786 canopy_generator.grapevineUnilateral(*this, origin);
+
787}
+
788
-
789 float nullvalue_f = 99999;
-
790 int nullvalue_i = 99999;
-
791 std::string nullvalue_s = "99999";
+
+
789void UnilateralGrapevineParameters::buildCanopy(CanopyGenerator& canopy_generator){
+
790 canopy_generator.buildCanopy(*this);
+
791}
+
792
-
793 //Check if file exists
-
794 std::ifstream f(filename);
-
795 if( !f.good() ){
-
796 std::cerr << "failed." << std::endl;
-
797 throw( std::runtime_error("XML file " + std::string(filename) + " does not exist.") );
-
798 }
-
799
-
800 // Using "pugixml" parser. See pugixml.org
-
801 pugi::xml_document xmldoc;
+
+
793GobletGrapevineParameters::GobletGrapevineParameters() : BaseGrapeVineParameters(){
+
794
+
795 trunk_height = 0.7;
+
796
+
797 trunk_radius = 0.05;
+
798
+
799 cordon_height = 0.9;
+
800
+
801 cordon_radius = 0.02;
802
-
803 //load file
-
804 pugi::xml_parse_result result = xmldoc.load_file(filename);
-
805
-
806 //error checking
-
807 if (!result){
-
808 std::cout << "failed." << std::endl;
-
809 throw( std::runtime_error("XML file " + std::string(filename) + " parsed with errors, attribute value: [" + xmldoc.child("node").attribute("attr").value() + "]\nError description: " + result.description() + "\n"));
-
810 }
-
811
-
812 pugi::xml_node helios = xmldoc.child("helios");
-
813
-
814 if( helios.empty() ){
-
815 std::cout << "failed." << std::endl;
-
816 throw(std::runtime_error("ERROR (loadXML): XML file must have tag '<helios> ... </helios>' bounding all other tags."));
-
817 }
+
803 shoot_length = 0.9;
+
804
+
805 shoot_radius = 0.0025;
+
806
+
807 shoots_per_cordon = 10;
+
808
+
809 leaf_spacing_fraction = 0.6;
+
810
+
811 grape_radius = 0.0075;
+
812
+
813 cluster_radius = 0.03;
+
814
+
815 cluster_height_max = 0.1;
+
816
+
817 grape_subdivisions = 8;
818
-
819 //looping over any Canopy Generator blocks specified in XML file
-
820 for (pugi::xml_node cgen = helios.child("canopygenerator"); cgen; cgen = cgen.next_sibling("CanopyGenerator")) {
-
821
-
822 //looping over any canopy types specified
-
823
-
824 //Homogeneous Canopy
-
825 for (pugi::xml_node s = cgen.child("HomogeneousCanopyParameters"); s; s = s.next_sibling(
-
826 "HomogeneousCanopyParameters")) {
-
827
-
828 HomogeneousCanopyParameters homogeneouscanopyparameters;
-
829
-
830 // ----- leaf size ------//
-
831 vec2 leaf_size = XMLloadvec2(s, "leaf_size");
-
832 if (leaf_size.x != nullvalue_f && leaf_size.y != nullvalue_f) {
-
833 homogeneouscanopyparameters.leaf_size = leaf_size;
-
834 }
-
835
-
836 // ----- leaf subdivisions ------//
-
837 int2 leaf_subdivisions = XMLloadint2(s, "leaf_subdivisions");
-
838 if (leaf_subdivisions.x != nullvalue_i && leaf_subdivisions.y != nullvalue_i) {
-
839 homogeneouscanopyparameters.leaf_subdivisions = leaf_subdivisions;
-
840 }
-
841
-
842 // ----- leaf color ------//
-
843 RGBAcolor leaf_color = XMLloadrgba(s, "leaf_color");
-
844 if (leaf_color.a != 0) {
-
845 homogeneouscanopyparameters.leaf_color = make_RGBcolor(leaf_color.r,leaf_color.g,leaf_color.b);
-
846 }
-
847
-
848 // ----- leaf texture file ------//
-
849 std::string leaf_texture_file = XMLloadstring(s, "leaf_texture_file");
-
850 if (leaf_texture_file != nullvalue_s) {
-
851 homogeneouscanopyparameters.leaf_texture_file = leaf_texture_file;
-
852 }
-
853
-
854 // ----- leaf area index ------//
-
855 float LAI = XMLloadfloat(s, "leaf_area_index");
-
856 if (LAI != nullvalue_f) {
-
857 homogeneouscanopyparameters.leaf_area_index = LAI;
-
858 }
-
859
-
860 // ----- canopy height ------//
-
861 float h = XMLloadfloat(s, "canopy_height");
-
862 if (h != nullvalue_f) {
-
863 homogeneouscanopyparameters.canopy_height = h;
-
864 }
-
865
-
866 // ----- canopy extent ------//
-
867 vec2 canopy_extent = XMLloadvec2(s, "canopy_extent");
-
868 if (canopy_extent.x != nullvalue_f && canopy_extent.y != nullvalue_f) {
-
869 homogeneouscanopyparameters.canopy_extent = canopy_extent;
-
870 }
-
871
-
872 // ----- canopy origin ------//
-
873 vec3 canopy_origin = XMLloadvec3(s, "canopy_origin");
-
874 if (canopy_origin.x != nullvalue_f && canopy_origin.y != nullvalue_f) {
-
875 homogeneouscanopyparameters.canopy_origin = canopy_origin;
-
876 }
-
877
-
878 // ----- buffer ------//
-
879 std::string buffer = XMLloadstring(s, "buffer");
-
880 if ( buffer != nullvalue_s ) {
-
881 homogeneouscanopyparameters.buffer = buffer;
-
882 }
-
883
-
884 buildCanopy(homogeneouscanopyparameters);
+
819 plant_spacing = 2;
+
820
+
821 row_spacing = 2;
+
822
+
823}
+
+
824
+
+
825GobletGrapevineParameters::GobletGrapevineParameters(const pugi::xml_node canopy_node) : GobletGrapevineParameters(){
+
826 readParametersFromXML(canopy_node);
+
827}
+
+
828
+
+
829void GobletGrapevineParameters::readParametersFromXML(const pugi::xml_node canopy_node){
+
830 BaseGrapeVineParameters::readParametersFromXML(canopy_node);
+
831}
+
+
832
+
+
833void GobletGrapevineParameters::buildPlant(CanopyGenerator& canopy_generator, helios::vec3 origin){
+
834 canopy_generator.grapevineGoblet(*this, origin);
+
835}
+
+
836
+
+
837void GobletGrapevineParameters::buildCanopy(CanopyGenerator& canopy_generator){
+
838 canopy_generator.buildCanopy(*this);
+
839}
+
+
840
+
+
841WhiteSpruceCanopyParameters::WhiteSpruceCanopyParameters() : BaseCanopyParameters(){
+
842
+
843 needle_width = 0.0005;
+
844
+
845 needle_length = 0.05;
+
846
+
847 needle_color = make_RGBcolor(0.67,0.9,0.56);
+
848
+
849 needle_subdivisions = make_int2(1,1);
+
850
+
851 wood_texture_file = "plugins/canopygenerator/textures/wood.jpg";
+
852
+
853 wood_subdivisions = 10;
+
854
+
855 trunk_height = 10;
+
856
+
857 trunk_radius = 0.15;
+
858
+
859 base_height = 2.0;
+
860
+
861 crown_radius = 0.65;
+
862
+
863 shoot_radius = 0.02;
+
864
+
865 level_spacing = 0.35;
+
866
+
867 branches_per_level = 8;
+
868
+
869 shoot_angle = 0.3*M_PI;
+
870
+
871 canopy_configuration = "random";
+
872
+
873 plant_spacing = make_vec2(10,10);
+
874
+
875 plant_count = make_int2(3,3);
+
876
+
877}
+
+
878
+
+
879WhiteSpruceCanopyParameters::WhiteSpruceCanopyParameters(const pugi::xml_node canopy_node) : WhiteSpruceCanopyParameters(){
+
880 readParametersFromXML(canopy_node);
+
881}
+
+
882
+
+
883void WhiteSpruceCanopyParameters::readParametersFromXML(const pugi::xml_node canopy_node){
+
884 BaseCanopyParameters::readParametersFromXML(canopy_node);
885
-
886 }
-
887
-
888
-
889 //VSP Grapevine Canopy
-
890 for (pugi::xml_node s = cgen.child("VSPGrapevineParameters"); s; s = s.next_sibling("VSPGrapevineParameters")) {
-
891
-
892 VSPGrapevineParameters vspgrapevineparameters;
-
893
-
894 float leaf_width = XMLloadfloat(s, "leaf_width");
-
895 if (leaf_width != nullvalue_f) {
-
896 vspgrapevineparameters.leaf_width = leaf_width;
-
897 }
-
898
-
899 int2 leaf_subdivisions = XMLloadint2(s, "leaf_subdivisions");
-
900 if (leaf_subdivisions.x != nullvalue_i && leaf_subdivisions.y != nullvalue_i) {
-
901 vspgrapevineparameters.leaf_subdivisions = leaf_subdivisions;
-
902 }
-
903
-
904 std::string leaf_texture_file = XMLloadstring(s, "leaf_texture_file");
-
905 if ( leaf_texture_file != nullvalue_s ) {
-
906 vspgrapevineparameters.leaf_texture_file = leaf_texture_file;
-
907 }
-
908
-
909 std::string wood_texture_file = XMLloadstring(s, "wood_texture_file");
-
910 if ( wood_texture_file != nullvalue_s ) {
-
911 vspgrapevineparameters.wood_texture_file = wood_texture_file;
-
912 }
-
913
-
914 int wood_subdivisions = XMLloadint(s, "wood_subdivisions");
-
915 if ( wood_subdivisions != nullvalue_i) {
-
916 vspgrapevineparameters.wood_subdivisions = wood_subdivisions;
-
917 }
-
918
-
919 float h = XMLloadfloat(s, "trunk_height");
-
920 if (h != nullvalue_f) {
-
921 vspgrapevineparameters.trunk_height = h;
-
922 }
-
923
-
924 float r = XMLloadfloat(s, "trunk_radius");
-
925 if (r != nullvalue_f) {
-
926 vspgrapevineparameters.trunk_radius = r;
-
927 }
-
928
-
929 float ch = XMLloadfloat(s, "cordon_height");
-
930 if (ch != nullvalue_f) {
-
931 vspgrapevineparameters.cordon_height = ch;
-
932 }
-
933
-
934 float cr = XMLloadfloat(s, "cordon_radius");
-
935 if (cr != nullvalue_f) {
-
936 vspgrapevineparameters.cordon_radius = cr;
-
937 }
-
938
-
939 float sl = XMLloadfloat(s, "shoot_length");
-
940 if (sl != nullvalue_f) {
-
941 vspgrapevineparameters.shoot_length = sl;
-
942 }
-
943
-
944 float sr = XMLloadfloat(s, "shoot_radius");
-
945 if (sr != nullvalue_f) {
-
946 vspgrapevineparameters.shoot_radius = sr;
-
947 }
-
948
-
949 int spc = XMLloadint(s, "shoots_per_cordon");
-
950 if (spc != nullvalue_i) {
-
951 vspgrapevineparameters.shoots_per_cordon = uint(spc);
-
952 }
-
953
-
954 float lsf = XMLloadfloat(s, "leaf_spacing_fraction");
-
955 if (lsf != nullvalue_f) {
-
956 vspgrapevineparameters.leaf_spacing_fraction = lsf;
-
957 }
-
958
-
959 float gr = XMLloadfloat(s, "grape_radius");
-
960 if (gr != nullvalue_f) {
-
961 vspgrapevineparameters.grape_radius = gr;
-
962 }
-
963
-
964 float clr = XMLloadfloat(s, "cluster_radius");
-
965 if (clr != nullvalue_f) {
-
966 vspgrapevineparameters.cluster_radius = clr;
-
967 }
-
968
-
969 RGBAcolor grape_color = XMLloadrgba(s, "grape_color");
-
970 if ( grape_color.a != 0 ) {
-
971 vspgrapevineparameters.grape_color = make_RGBcolor(grape_color.r,grape_color.g,grape_color.b);
-
972 }
-
973
-
974 int grape_subdivisions = XMLloadint(s, "grape_subdivisions");
-
975 if (grape_subdivisions != nullvalue_i) {
-
976 vspgrapevineparameters.grape_subdivisions = uint(grape_subdivisions);
-
977 }
+
886 float new_needle_width = XMLloadfloat(canopy_node, "needle_width");
+
887 if (new_needle_width != nullvalue_f) {
+
888 needle_width = new_needle_width;
+
889 }
+
890
+
891 float new_needle_length = XMLloadfloat(canopy_node, "needle_length");
+
892 if (new_needle_length != nullvalue_f) {
+
893 needle_length = new_needle_length;
+
894 }
+
895
+
896 int2 new_needle_subdivisions = XMLloadint2(canopy_node, "needle_subdivisions");
+
897 if (new_needle_subdivisions.x != nullvalue_i && new_needle_subdivisions.y != nullvalue_i) {
+
898 needle_subdivisions = new_needle_subdivisions;
+
899 }
+
900
+
901 RGBAcolor new_needle_color = XMLloadrgba(canopy_node, "needle_color");
+
902 if (new_needle_color.a != 0) {
+
903 needle_color = make_RGBcolor(new_needle_color.r, new_needle_color.g, new_needle_color.b);
+
904 }
+
905
+
906 std::string new_wood_texture_file = XMLloadstring(canopy_node, "wood_texture_file");
+
907 if ( new_wood_texture_file != nullvalue_s ) {
+
908 wood_texture_file = new_wood_texture_file;
+
909 }
+
910
+
911 int new_wood_subdivisions = XMLloadint(canopy_node, "wood_subdivisions");
+
912 if (new_wood_subdivisions != nullvalue_i) {
+
913 wood_subdivisions = new_wood_subdivisions;
+
914 }
+
915
+
916 float new_trunk_height = XMLloadfloat(canopy_node, "trunk_height");
+
917 if (new_trunk_height != nullvalue_f) {
+
918 trunk_height = new_trunk_height;
+
919 }
+
920
+
921 float new_trunk_radius = XMLloadfloat(canopy_node, "trunk_radius");
+
922 if (new_trunk_radius != nullvalue_f) {
+
923 trunk_radius = new_trunk_radius;
+
924 }
+
925
+
926 float new_crown_radius = XMLloadfloat(canopy_node, "crown_radius");
+
927 if (new_crown_radius != nullvalue_f) {
+
928 crown_radius = new_crown_radius;
+
929 }
+
930
+
931 float new_shoot_radius = XMLloadfloat(canopy_node, "shoot_radius");
+
932 if (new_shoot_radius != nullvalue_f) {
+
933 shoot_radius = new_shoot_radius;
+
934 }
+
935
+
936 float new_level_spacing = XMLloadfloat(canopy_node, "level_spacing");
+
937 if (new_level_spacing != nullvalue_f) {
+
938 level_spacing = new_level_spacing;
+
939 }
+
940
+
941 int new_branches_per_level = XMLloadint(canopy_node, "branches_per_level");
+
942 if (new_branches_per_level != nullvalue_i) {
+
943 branches_per_level = new_branches_per_level;
+
944 }
+
945
+
946 float new_shoot_angle = XMLloadfloat(canopy_node, "shoot_angle");
+
947 if (new_shoot_angle != nullvalue_f) {
+
948 shoot_angle = new_shoot_angle;
+
949 }
+
950
+
951 std::string new_canopy_configuration = XMLloadstring(canopy_node, "canopy_configuration");
+
952 if (new_canopy_configuration != nullvalue_s) {
+
953 canopy_configuration = new_canopy_configuration;
+
954 }
+
955
+
956 vec2 new_plant_spacing = XMLloadvec2(canopy_node, "plant_spacing");
+
957 if (new_plant_spacing.x != nullvalue_f && new_plant_spacing.y != nullvalue_f) {
+
958 plant_spacing = new_plant_spacing;
+
959 }
+
960
+
961 int2 new_plant_count = XMLloadint2(canopy_node, "plant_count");
+
962 if (new_plant_count.x != nullvalue_i && new_plant_count.y != nullvalue_i) {
+
963 plant_count = new_plant_count;
+
964 }
+
965}
+
+
966
+
+
967void WhiteSpruceCanopyParameters::buildPlant(CanopyGenerator& canopy_generator, helios::vec3 origin){
+
968 canopy_generator.whitespruce(*this, origin);
+
969}
+
+
970
+
+
971void WhiteSpruceCanopyParameters::buildCanopy(CanopyGenerator& canopy_generator){
+
972 canopy_generator.buildCanopy(*this);
+
973}
+
+
974
+
+
975TomatoParameters::TomatoParameters() : BaseCanopyParameters(){
+
976
+
977 leaf_length = 0.2;
978
-
979 float plant_spacing = XMLloadfloat(s, "plant_spacing");
-
980 if (plant_spacing != nullvalue_f) {
-
981 vspgrapevineparameters.plant_spacing = plant_spacing;
-
982 }
-
983
-
984 float row_spacing = XMLloadfloat(s, "row_spacing");
-
985 if (row_spacing != nullvalue_f) {
-
986 vspgrapevineparameters.row_spacing = row_spacing;
-
987 }
+
979 leaf_subdivisions = make_int2(4,3);
+
980
+
981 leaf_texture_file = "plugins/canopygenerator/textures/TomatoLeaf_big.png";
+
982
+
983 shoot_color = make_RGBcolor(0.35,0.45,0.2);
+
984
+
985 shoot_subdivisions = 10;
+
986
+
987 plant_height = 1.;
988
-
989 int2 plant_count = XMLloadint2(s, "plant_count");
-
990 if (plant_count.x != nullvalue_i && plant_count.y != nullvalue_i) {
-
991 vspgrapevineparameters.plant_count = plant_count;
-
992 }
-
993
-
994 vec3 canopy_origin = XMLloadvec3(s, "canopy_origin");
-
995 if (canopy_origin.x != nullvalue_f && canopy_origin.y != nullvalue_f) {
-
996 vspgrapevineparameters.canopy_origin = canopy_origin;
-
997 }
+
989 fruit_radius = 0.03;
+
990
+
991 fruit_color = make_RGBcolor(0.7,0.28,0.2);
+
992
+
993 fruit_subdivisions = 8;
+
994
+
995 plant_spacing = 2;
+
996
+
997 row_spacing = 2;
998
-
999 float canopy_rotation = XMLloadfloat(s, "canopy_rotation");
-
1000 if (canopy_rotation != nullvalue_f) {
-
1001 vspgrapevineparameters.canopy_rotation = canopy_rotation;
-
1002 }
-
1003
-
1004 buildCanopy(vspgrapevineparameters);
-
1005
-
1006 }
-
1007
-
1008 //Split Grapevine Canopy
-
1009 for (pugi::xml_node s = cgen.child("SplitGrapevineParameters"); s; s = s.next_sibling(
-
1010 "SplitGrapevineParameters")) {
-
1011
-
1012 SplitGrapevineParameters splitgrapevineparameters;
-
1013
-
1014 float leaf_width = XMLloadfloat(s, "leaf_width");
-
1015 if (leaf_width != nullvalue_f) {
-
1016 splitgrapevineparameters.leaf_width = leaf_width;
-
1017 }
-
1018
-
1019 int2 leaf_subdivisions = XMLloadint2(s, "leaf_subdivisions");
-
1020 if (leaf_subdivisions.x != nullvalue_i && leaf_subdivisions.y != nullvalue_i) {
-
1021 splitgrapevineparameters.leaf_subdivisions = leaf_subdivisions;
-
1022 }
-
1023
-
1024 std::string leaf_texture_file = XMLloadstring(s, "leaf_texture_file");
-
1025 if ( leaf_texture_file != nullvalue_s ) {
-
1026 splitgrapevineparameters.leaf_texture_file = leaf_texture_file;
-
1027 }
-
1028
-
1029 std::string wood_texture_file = XMLloadstring(s, "wood_texture_file");
-
1030 if ( wood_texture_file != nullvalue_s ) {
-
1031 splitgrapevineparameters.wood_texture_file = wood_texture_file;
-
1032 }
-
1033
-
1034 int wood_subdivisions = XMLloadint(s, "wood_subdivisions");
-
1035 if (wood_subdivisions != nullvalue_i) {
-
1036 splitgrapevineparameters.wood_subdivisions = wood_subdivisions;
-
1037 }
-
1038
-
1039 float h = XMLloadfloat(s, "trunk_height");
-
1040 if (h != nullvalue_f) {
-
1041 splitgrapevineparameters.trunk_height = h;
-
1042 }
-
1043
-
1044 float r = XMLloadfloat(s, "trunk_radius");
-
1045 if (r != nullvalue_f) {
-
1046 splitgrapevineparameters.trunk_radius = r;
-
1047 }
-
1048
-
1049 float ch = XMLloadfloat(s, "cordon_height");
-
1050 if (ch != nullvalue_f) {
-
1051 splitgrapevineparameters.cordon_height = ch;
-
1052 }
-
1053
-
1054 float cr = XMLloadfloat(s, "cordon_radius");
-
1055 if (cr != nullvalue_f) {
-
1056 splitgrapevineparameters.cordon_radius = cr;
-
1057 }
-
1058
-
1059 float cs = XMLloadfloat(s, "cordon_spacing");
-
1060 if (cs != nullvalue_f) {
-
1061 splitgrapevineparameters.cordon_spacing = cs;
-
1062 }
-
1063
-
1064 float sl = XMLloadfloat(s, "shoot_length");
-
1065 if (sl != nullvalue_f) {
-
1066 splitgrapevineparameters.shoot_length = sl;
-
1067 }
-
1068
-
1069 float sr = XMLloadfloat(s, "shoot_radius");
-
1070 if (sr != nullvalue_f) {
-
1071 splitgrapevineparameters.shoot_radius = sr;
-
1072 }
-
1073
-
1074 int spc = XMLloadint(s, "shoots_per_cordon");
-
1075 if (spc != nullvalue_i) {
-
1076 splitgrapevineparameters.shoots_per_cordon = uint(spc);
-
1077 }
-
1078
-
1079/*
-
1080 float spa = XMLloadfloat( s, "shoots_tip_angle" );
-
1081 if( spa != nullvalue_f ){
-
1082 splitgrapevineparameters.shoots_tip_angle = uint(spa);
-
1083*/
-
1084 float lsf = XMLloadfloat(s, "leaf_spacing_fraction");
-
1085 if (lsf != nullvalue_f) {
-
1086 splitgrapevineparameters.leaf_spacing_fraction = lsf;
-
1087 }
-
1088
-
1089 float gr = XMLloadfloat(s, "grape_radius");
-
1090 if (gr != nullvalue_f) {
-
1091 splitgrapevineparameters.grape_radius = gr;
-
1092 }
+
999 plant_count = make_int2(3,3);
+
1000
+
1001}
+
+
1002
+
+
1003TomatoParameters::TomatoParameters(const pugi::xml_node canopy_node) : TomatoParameters(){
+
1004 readParametersFromXML(canopy_node);
+
1005}
+
+
1006
+
+
1007void TomatoParameters::readParametersFromXML(const pugi::xml_node canopy_node){
+
1008 BaseCanopyParameters::readParametersFromXML(canopy_node);
+
1009
+
1010 float new_leaf_length = XMLloadfloat(canopy_node, "leaf_length");
+
1011 if (new_leaf_length != nullvalue_f) {
+
1012 leaf_length = new_leaf_length;
+
1013 }
+
1014
+
1015 int2 new_leaf_subdivisions = XMLloadint2(canopy_node, "leaf_subdivisions");
+
1016 if (new_leaf_subdivisions.x != nullvalue_i && new_leaf_subdivisions.y != nullvalue_i) {
+
1017 leaf_subdivisions = new_leaf_subdivisions;
+
1018 }
+
1019
+
1020 std::string new_leaf_texture_file = XMLloadstring(canopy_node, "leaf_texture_file");
+
1021 if ( new_leaf_texture_file != nullvalue_s ) {
+
1022 leaf_texture_file = new_leaf_texture_file;
+
1023 }
+
1024
+
1025 RGBAcolor new_shoot_color = XMLloadrgba(canopy_node, "shoot_color");
+
1026 if (new_shoot_color.a != 0 ) {
+
1027 shoot_color = make_RGBcolor(new_shoot_color.r, new_shoot_color.g, new_shoot_color.b);
+
1028 }
+
1029
+
1030 int new_shoot_subdivisions = XMLloadint(canopy_node, "shoot_subdivisions");
+
1031 if (new_shoot_subdivisions != nullvalue_i) {
+
1032 shoot_subdivisions = new_shoot_subdivisions;
+
1033 }
+
1034
+
1035 float h = XMLloadfloat(canopy_node, "plant_height");
+
1036 if (h != nullvalue_f) {
+
1037 plant_height = h;
+
1038 }
+
1039
+
1040 float gr = XMLloadfloat(canopy_node, "fruit_radius");
+
1041 if (gr != nullvalue_f) {
+
1042 fruit_radius = gr;
+
1043 }
+
1044
+
1045 RGBAcolor new_fruit_color = XMLloadrgba(canopy_node, "fruit_color");
+
1046 if (new_fruit_color.a != 0 ) {
+
1047 fruit_color = make_RGBcolor(new_fruit_color.r, new_fruit_color.g, new_fruit_color.b);
+
1048 }
+
1049
+
1050
+
1051 int new_fruit_subdivisions = XMLloadint(canopy_node, "fruit_subdivisions");
+
1052 if (new_fruit_subdivisions != nullvalue_i) {
+
1053 fruit_subdivisions = uint(new_fruit_subdivisions);
+
1054 }
+
1055
+
1056 float new_plant_spacing = XMLloadfloat(canopy_node, "plant_spacing");
+
1057 if (new_plant_spacing != nullvalue_f) {
+
1058 plant_spacing = new_plant_spacing;
+
1059 }
+
1060
+
1061 float new_row_spacing = XMLloadfloat(canopy_node, "row_spacing");
+
1062 if (new_row_spacing != nullvalue_f) {
+
1063 row_spacing = new_row_spacing;
+
1064 }
+
1065
+
1066 int2 new_plant_count = XMLloadint2(canopy_node, "plant_count");
+
1067 if (new_plant_count.x != nullvalue_i && new_plant_count.y != nullvalue_i) {
+
1068 plant_count = new_plant_count;
+
1069 }
+
1070}
+
+
1071
+
+
1072void TomatoParameters::buildPlant(CanopyGenerator& canopy_generator, helios::vec3 origin){
+
1073 canopy_generator.tomato(*this, origin);
+
1074}
+
+
1075
+
+
1076void TomatoParameters::buildCanopy(CanopyGenerator& canopy_generator){
+
1077 canopy_generator.buildCanopy(*this);
+
1078}
+
+
1079
+
+
1080StrawberryParameters::StrawberryParameters() : BaseCanopyParameters(){
+
1081
+
1082 leaf_length = 0.1;
+
1083
+
1084 leaf_subdivisions = make_int2(4,4);
+
1085
+
1086 leaf_texture_file = "plugins/canopygenerator/textures/StrawberryLeaf.png";
+
1087
+
1088 stem_color = make_RGBcolor(0.35,0.45,0.2);
+
1089
+
1090 stem_subdivisions = 10;
+
1091
+
1092 stems_per_plant = 50;
1093
-
1094 float clr = XMLloadfloat(s, "cluster_radius");
-
1095 if (clr != nullvalue_f) {
-
1096 splitgrapevineparameters.cluster_radius = clr;
-
1097 }
-
1098
-
1099 RGBAcolor grape_color = XMLloadrgba(s, "grape_color");
-
1100 if (grape_color.a!=0 ) {
-
1101 splitgrapevineparameters.grape_color = make_RGBcolor(grape_color.r,grape_color.g,grape_color.b);
-
1102 }
+
1094 stem_radius = 0.005;
+
1095
+
1096 plant_height = 0.4;
+
1097
+
1098 fruit_radius = 0.025;
+
1099
+
1100 fruit_texture_file = "plugins/canopygenerator/textures/StrawberryTexture.jpg";
+
1101
+
1102 fruit_subdivisions = 12;
1103
-
1104 int grape_subdivisions = XMLloadint(s, "grape_subdivisions");
-
1105 if (grape_subdivisions != nullvalue_i) {
-
1106 splitgrapevineparameters.grape_subdivisions = uint(grape_subdivisions);
-
1107 }
-
1108
-
1109 float plant_spacing = XMLloadfloat(s, "plant_spacing");
-
1110 if (plant_spacing != nullvalue_f) {
-
1111 splitgrapevineparameters.plant_spacing = plant_spacing;
-
1112 }
+
1104 clusters_per_stem = 0.6;
+
1105
+
1106 plant_spacing = 0.5;
+
1107
+
1108 row_spacing = 1.5;
+
1109
+
1110 plant_count = make_int2(4,2);
+
1111
+
1112}
+
1113
-
1114 float row_spacing = XMLloadfloat(s, "row_spacing");
-
1115 if (row_spacing != nullvalue_f) {
-
1116 splitgrapevineparameters.row_spacing = row_spacing;
-
1117 }
-
1118
-
1119 int2 plant_count = XMLloadint2(s, "plant_count");
-
1120 if (plant_count.x != nullvalue_i && plant_count.y != nullvalue_i) {
-
1121 splitgrapevineparameters.plant_count = plant_count;
-
1122 }
-
1123
-
1124 vec3 canopy_origin = XMLloadvec3(s, "canopy_origin");
-
1125 if (canopy_origin.x != nullvalue_f && canopy_origin.y != nullvalue_f) {
-
1126 splitgrapevineparameters.canopy_origin = canopy_origin;
-
1127 }
-
1128
-
1129 float canopy_rotation = XMLloadfloat(s, "canopy_rotation");
-
1130 if (canopy_rotation != nullvalue_f) {
-
1131 splitgrapevineparameters.canopy_rotation = canopy_rotation;
-
1132 }
-
1133
-
1134
-
1135 buildCanopy(splitgrapevineparameters);
-
1136
-
1137 }
-
1138
-
1139
-
1140 //UnilateralGrapevineParameters Canopy
-
1141 for (pugi::xml_node s = cgen.child("UnilateralGrapevineParameters"); s; s = s.next_sibling(
-
1142 "UnilateralGrapevineParameters")) {
-
1143
-
1144 UnilateralGrapevineParameters unilateralgrapevineparameters;
+
+
1114StrawberryParameters::StrawberryParameters(const pugi::xml_node canopy_node) : StrawberryParameters(){
+
1115 readParametersFromXML(canopy_node);
+
1116}
+
+
1117
+
+
1118void StrawberryParameters::readParametersFromXML(const pugi::xml_node canopy_node){
+
1119 BaseCanopyParameters::readParametersFromXML(canopy_node);
+
1120
+
1121 float new_leaf_length = XMLloadfloat(canopy_node, "leaf_length");
+
1122 if (new_leaf_length != nullvalue_f) {
+
1123 leaf_length = new_leaf_length;
+
1124 }
+
1125
+
1126 int2 new_leaf_subdivisions = XMLloadint2(canopy_node, "leaf_subdivisions");
+
1127 if (new_leaf_subdivisions.x != nullvalue_i && new_leaf_subdivisions.y != nullvalue_i) {
+
1128 leaf_subdivisions = new_leaf_subdivisions;
+
1129 }
+
1130
+
1131 std::string new_leaf_texture_file = XMLloadstring(canopy_node, "leaf_texture_file");
+
1132 if ( new_leaf_texture_file != nullvalue_s ) {
+
1133 leaf_texture_file = new_leaf_texture_file;
+
1134 }
+
1135
+
1136 int new_stem_subdivisions = XMLloadint(canopy_node, "stem_subdivisions");
+
1137 if (new_stem_subdivisions != nullvalue_i) {
+
1138 stem_subdivisions = new_stem_subdivisions;
+
1139 }
+
1140
+
1141 float new_stem_radius = XMLloadfloat(canopy_node, "stem_radius");
+
1142 if (new_stem_radius != nullvalue_f) {
+
1143 stem_radius = new_stem_radius;
+
1144 }
1145
-
1146 float leaf_width = XMLloadfloat(s, "leaf_width");
-
1147 if (leaf_width != nullvalue_f) {
-
1148 unilateralgrapevineparameters.leaf_width = leaf_width;
-
1149 }
+
1146 float h = XMLloadfloat(canopy_node, "plant_height");
+
1147 if (h != nullvalue_f) {
+
1148 plant_height = h;
+
1149 }
1150
-
1151 int2 leaf_subdivisions = XMLloadint2(s, "leaf_subdivisions");
-
1152 if (leaf_subdivisions.x != nullvalue_i && leaf_subdivisions.y != nullvalue_i) {
-
1153 unilateralgrapevineparameters.leaf_subdivisions = leaf_subdivisions;
-
1154 }
+
1151 int r = XMLloadint(canopy_node, "stems_per_plant");
+
1152 if (r != nullvalue_i) {
+
1153 stems_per_plant = r;
+
1154 }
1155
-
1156 std::string leaf_texture_file = XMLloadstring(s, "leaf_texture_file");
-
1157 if ( leaf_texture_file != nullvalue_s ) {
-
1158 unilateralgrapevineparameters.leaf_texture_file = leaf_texture_file;
-
1159 }
+
1156 float gr = XMLloadfloat(canopy_node, "fruit_radius");
+
1157 if (gr != nullvalue_f) {
+
1158 fruit_radius = gr;
+
1159 }
1160
-
1161 std::string wood_texture_file = XMLloadstring(s, "wood_texture_file");
-
1162 if ( wood_texture_file != nullvalue_s ) {
-
1163 unilateralgrapevineparameters.wood_texture_file = wood_texture_file;
-
1164 }
+
1161 float clr = XMLloadfloat(canopy_node, "clusters_per_stem");
+
1162 if (clr != nullvalue_f) {
+
1163 clusters_per_stem = clr;
+
1164 }
1165
-
1166 int wood_subdivisions = XMLloadint(s, "wood_subdivisions");
-
1167 if ( wood_subdivisions != nullvalue_i) {
-
1168 unilateralgrapevineparameters.wood_subdivisions = wood_subdivisions;
-
1169 }
+
1166 int new_fruit_subdivisions = XMLloadint(canopy_node, "fruit_subdivisions");
+
1167 if (new_fruit_subdivisions != nullvalue_i) {
+
1168 fruit_subdivisions = uint(new_fruit_subdivisions);
+
1169 }
1170
-
1171 float h = XMLloadfloat(s, "trunk_height");
-
1172 if (h != nullvalue_f) {
-
1173 unilateralgrapevineparameters.trunk_height = h;
-
1174 }
+
1171 std::string new_fruit_texture_file = XMLloadstring(canopy_node, "fruit_texture_file");
+
1172 if ( new_fruit_texture_file != nullvalue_s ) {
+
1173 fruit_texture_file = new_fruit_texture_file;
+
1174 }
1175
-
1176 float r = XMLloadfloat(s, "trunk_radius");
-
1177 if (r != nullvalue_f) {
-
1178 unilateralgrapevineparameters.trunk_radius = r;
-
1179 }
+
1176 float new_plant_spacing = XMLloadfloat(canopy_node, "plant_spacing");
+
1177 if (new_plant_spacing != nullvalue_f) {
+
1178 plant_spacing = new_plant_spacing;
+
1179 }
1180
-
1181 float ch = XMLloadfloat(s, "cordon_height");
-
1182 if (ch != nullvalue_f) {
-
1183 unilateralgrapevineparameters.cordon_height = ch;
-
1184 }
+
1181 float new_row_spacing = XMLloadfloat(canopy_node, "row_spacing");
+
1182 if (new_row_spacing != nullvalue_f) {
+
1183 row_spacing = new_row_spacing;
+
1184 }
1185
-
1186 float cr = XMLloadfloat(s, "cordon_radius");
-
1187 if (cr != nullvalue_f) {
-
1188 unilateralgrapevineparameters.cordon_radius = cr;
-
1189 }
-
1190
-
1191 float sl = XMLloadfloat(s, "shoot_length");
-
1192 if (sl != nullvalue_f) {
-
1193 unilateralgrapevineparameters.shoot_length = sl;
-
1194 }
+
1186 int2 new_plant_count = XMLloadint2(canopy_node, "plant_count");
+
1187 if (new_plant_count.x != nullvalue_i && new_plant_count.y != nullvalue_i) {
+
1188 plant_count = plant_count;
+
1189 }
+
1190}
+
+
1191
+
+
1192void StrawberryParameters::buildPlant(CanopyGenerator& canopy_generator, helios::vec3 origin){
+
1193 canopy_generator.strawberry(*this, origin);
+
1194}
+
1195
-
1196 float sr = XMLloadfloat(s, "shoot_radius");
-
1197 if (sr != nullvalue_f) {
-
1198 unilateralgrapevineparameters.shoot_radius = sr;
-
1199 }
-
1200
-
1201 int spc = XMLloadint(s, "shoots_per_cordon");
-
1202 if (spc != nullvalue_i) {
-
1203 unilateralgrapevineparameters.shoots_per_cordon = uint(spc);
-
1204 }
+
+
1196void StrawberryParameters::buildCanopy(CanopyGenerator& canopy_generator){
+
1197 canopy_generator.buildCanopy(*this);
+
1198}
+
+
1199
+
+
1200WalnutCanopyParameters::WalnutCanopyParameters() : BaseCanopyParameters(){
+
1201
+
1202 leaf_length = 0.15;
+
1203
+
1204 leaf_subdivisions = make_int2(1,2);
1205
-
1206/*
-
1207 float spa = XMLloadfloat( s, "shoots_tip_angle" );
-
1208 if( spa != nullvalue_f ){
-
1209 unilateralgrapevineparameters.shoots_tip_angle = uint(spa);
-
1210 }*/
+
1206 leaf_texture_file = "plugins/canopygenerator/textures/WalnutLeaf.png";
+
1207
+
1208 wood_texture_file = "plugins/canopygenerator/textures/wood.jpg";
+
1209
+
1210 wood_subdivisions = 10;
1211
-
1212 float lsf = XMLloadfloat(s, "leaf_spacing_fraction");
-
1213 if (lsf != nullvalue_f) {
-
1214 unilateralgrapevineparameters.leaf_spacing_fraction = lsf;
-
1215 }
-
1216
-
1217 float gr = XMLloadfloat(s, "grape_radius");
-
1218 if (gr != nullvalue_f) {
-
1219 unilateralgrapevineparameters.grape_radius = gr;
-
1220 }
+
1212 trunk_radius = 0.15;
+
1213
+
1214 trunk_height = 4.f;
+
1215
+
1216 branch_length = make_vec3(4,0.75,0.75);
+
1217
+
1218 fruit_radius = 0.04;
+
1219
+
1220 fruit_texture_file = "plugins/canopygenerator/textures/WalnutTexture.png";
1221
-
1222 float clr = XMLloadfloat(s, "cluster_radius");
-
1223 if (clr != nullvalue_f) {
-
1224 unilateralgrapevineparameters.cluster_radius = clr;
-
1225 }
-
1226
-
1227 RGBAcolor grape_color = XMLloadrgba(s, "grape_color");
-
1228 if (grape_color.a!=0 ) {
-
1229 unilateralgrapevineparameters.grape_color = make_RGBcolor(grape_color.r,grape_color.g,grape_color.b);
-
1230 }
+
1222 fruit_subdivisions = 16;
+
1223
+
1224 plant_spacing = 6;
+
1225
+
1226 row_spacing = 8;
+
1227
+
1228 plant_count = make_int2(4,2);
+
1229
+
1230}
+
1231
-
1232 int grape_subdivisions = XMLloadint(s, "grape_subdivisions");
-
1233 if (grape_subdivisions != nullvalue_i) {
-
1234 unilateralgrapevineparameters.grape_subdivisions = uint(grape_subdivisions);
-
1235 }
-
1236
-
1237 float plant_spacing = XMLloadfloat(s, "plant_spacing");
-
1238 if (plant_spacing != nullvalue_f) {
-
1239 unilateralgrapevineparameters.plant_spacing = plant_spacing;
-
1240 }
-
1241
-
1242 float row_spacing = XMLloadfloat(s, "row_spacing");
-
1243 if (row_spacing != nullvalue_f) {
-
1244 unilateralgrapevineparameters.row_spacing = row_spacing;
-
1245 }
-
1246
-
1247 int2 plant_count = XMLloadint2(s, "plant_count");
-
1248 if (plant_count.x != nullvalue_i && plant_count.y != nullvalue_i) {
-
1249 unilateralgrapevineparameters.plant_count = plant_count;
-
1250 }
-
1251
-
1252 vec3 canopy_origin = XMLloadvec3(s, "canopy_origin");
-
1253 if (canopy_origin.x != nullvalue_f && canopy_origin.y != nullvalue_f) {
-
1254 unilateralgrapevineparameters.canopy_origin = canopy_origin;
-
1255 }
-
1256
-
1257 float canopy_rotation = XMLloadfloat(s, "canopy_rotation");
-
1258 if (canopy_rotation != nullvalue_f) {
-
1259 unilateralgrapevineparameters.canopy_rotation = canopy_rotation;
-
1260 }
-
1261
-
1262
-
1263 buildCanopy(unilateralgrapevineparameters);
+
+
1232WalnutCanopyParameters::WalnutCanopyParameters(const pugi::xml_node canopy_node) : WalnutCanopyParameters(){
+
1233 readParametersFromXML(canopy_node);
+
1234}
+
+
1235
+
+
1236void WalnutCanopyParameters::readParametersFromXML(const pugi::xml_node canopy_node){
+
1237 BaseCanopyParameters::readParametersFromXML(canopy_node);
+
1238
+
1239 float new_leaf_length = XMLloadfloat(canopy_node, "leaf_length");
+
1240 if (new_leaf_length != nullvalue_f) {
+
1241 leaf_length = new_leaf_length;
+
1242 }
+
1243
+
1244 int2 new_leaf_subdivisions = XMLloadint2(canopy_node, "leaf_subdivisions");
+
1245 if (new_leaf_subdivisions.x != nullvalue_i && new_leaf_subdivisions.y != nullvalue_i) {
+
1246 leaf_subdivisions = new_leaf_subdivisions;
+
1247 }
+
1248
+
1249 std::string new_leaf_texture_file = XMLloadstring(canopy_node, "leaf_texture_file");
+
1250 if ( new_leaf_texture_file != nullvalue_s ) {
+
1251 leaf_texture_file = new_leaf_texture_file;
+
1252 }
+
1253
+
1254 int new_wood_subdivisions = XMLloadint(canopy_node, "wood_subdivisions");
+
1255 if (new_wood_subdivisions != nullvalue_i) {
+
1256 wood_subdivisions = new_wood_subdivisions;
+
1257 }
+
1258
+
1259
+
1260 float new_trunk_radius = XMLloadfloat(canopy_node, "trunk_radius");
+
1261 if (new_trunk_radius != nullvalue_f) {
+
1262 trunk_radius = new_trunk_radius;
+
1263 }
1264
-
1265 }
-
1266
-
1267
-
1268 //GobletGrapevineParameters Canopy
-
1269 for (pugi::xml_node s = cgen.child("GobletGrapevineParameters"); s; s = s.next_sibling(
-
1270 "GobletGrapevineParameters")) {
-
1271
-
1272 GobletGrapevineParameters gobletgrapevineparameters;
-
1273
-
1274 float leaf_width = XMLloadfloat(s, "leaf_width");
-
1275 if (leaf_width != nullvalue_f) {
-
1276 gobletgrapevineparameters.leaf_width = leaf_width;
-
1277 }
-
1278
-
1279 int2 leaf_subdivisions = XMLloadint2(s, "leaf_subdivisions");
-
1280 if (leaf_subdivisions.x != nullvalue_i && leaf_subdivisions.y != nullvalue_i) {
-
1281 gobletgrapevineparameters.leaf_subdivisions = leaf_subdivisions;
-
1282 }
-
1283
-
1284 std::string leaf_texture_file = XMLloadstring(s, "leaf_texture_file");
-
1285 if ( leaf_texture_file != nullvalue_s ) {
-
1286 gobletgrapevineparameters.leaf_texture_file = leaf_texture_file;
-
1287 }
-
1288
-
1289 std::string wood_texture_file = XMLloadstring(s, "wood_texture_file");
-
1290 if ( wood_texture_file != nullvalue_s ) {
-
1291 gobletgrapevineparameters.wood_texture_file = wood_texture_file;
-
1292 }
-
1293
-
1294 int wood_subdivisions = XMLloadint(s, "wood_subdivisions");
-
1295 if (wood_subdivisions != nullvalue_i) {
-
1296 gobletgrapevineparameters.wood_subdivisions = wood_subdivisions;
-
1297 }
-
1298
-
1299 float h = XMLloadfloat(s, "trunk_height");
-
1300 if (h != nullvalue_f) {
-
1301 gobletgrapevineparameters.trunk_height = h;
-
1302 }
-
1303
-
1304 float r = XMLloadfloat(s, "trunk_radius");
-
1305 if (r != nullvalue_f) {
-
1306 gobletgrapevineparameters.trunk_radius = r;
-
1307 }
+
1265 float new_trunk_height = XMLloadfloat(canopy_node, "trunk_height");
+
1266 if (new_trunk_height != nullvalue_f) {
+
1267 trunk_height = new_trunk_height;
+
1268 }
+
1269
+
1270 vec3 new_branch_length = XMLloadvec3(canopy_node, "branch_length");
+
1271 if (new_branch_length.x != nullvalue_f && new_branch_length.y != nullvalue_f) {
+
1272 branch_length = new_branch_length;
+
1273 }
+
1274
+
1275 std::string new_fruit_texture_file = XMLloadstring(canopy_node, "fruit_texture_file");
+
1276 if ( new_fruit_texture_file != nullvalue_s ) {
+
1277 fruit_texture_file = new_fruit_texture_file;
+
1278 }
+
1279
+
1280 int new_fruit_subdivisions = XMLloadint(canopy_node, "fruit_subdivisions");
+
1281 if (new_fruit_subdivisions != nullvalue_i) {
+
1282 fruit_subdivisions = uint(new_fruit_subdivisions);
+
1283 }
+
1284
+
1285 float new_plant_spacing = XMLloadfloat(canopy_node, "plant_spacing");
+
1286 if (new_plant_spacing != nullvalue_f) {
+
1287 plant_spacing = new_plant_spacing;
+
1288 }
+
1289
+
1290 float new_row_spacing = XMLloadfloat(canopy_node, "row_spacing");
+
1291 if (new_row_spacing != nullvalue_f) {
+
1292 row_spacing = new_row_spacing;
+
1293 }
+
1294
+
1295 int2 new_plant_count = XMLloadint2(canopy_node, "plant_count");
+
1296 if (new_plant_count.x != nullvalue_i && new_plant_count.y != nullvalue_i) {
+
1297 plant_count = new_plant_count;
+
1298 }
+
1299}
+
+
1300
+
+
1301void WalnutCanopyParameters::buildPlant(CanopyGenerator& canopy_generator, helios::vec3 origin){
+
1302 canopy_generator.walnut(*this, origin);
+
1303}
+
+
1304
+
+
1305void WalnutCanopyParameters::buildCanopy(CanopyGenerator& canopy_generator){
+
1306 canopy_generator.buildCanopy(*this);
+
1307}
+
1308
-
1309 float ch = XMLloadfloat(s, "cordon_height");
-
1310 if (ch != nullvalue_f) {
-
1311 gobletgrapevineparameters.cordon_height = ch;
-
1312 }
-
1313
-
1314 float cr = XMLloadfloat(s, "cordon_radius");
-
1315 if (cr != nullvalue_f) {
-
1316 gobletgrapevineparameters.cordon_radius = cr;
-
1317 }
+
+
1309SorghumCanopyParameters::SorghumCanopyParameters() : BaseCanopyParameters(){
+
1310 sorghum_stage = 5;
+
1311
+
1312 // stage 1
+
1313 s1_stem_length = 0.04;
+
1314
+
1315 s1_stem_radius = 0.003;
+
1316
+
1317 s1_stem_subdivisions = 10;
1318
-
1319 float sl = XMLloadfloat(s, "shoot_length");
-
1320 if (sl != nullvalue_f) {
-
1321 gobletgrapevineparameters.shoot_length = sl;
-
1322 }
-
1323
-
1324 float sr = XMLloadfloat(s, "shoot_radius");
-
1325 if (sr != nullvalue_f) {
-
1326 gobletgrapevineparameters.shoot_radius = sr;
-
1327 }
+
1319 s1_leaf_size1 = make_vec2(0.14,0.012);
+
1320
+
1321 s1_leaf_size2 = make_vec2(0.12,0.012);
+
1322
+
1323 s1_leaf_size3 = make_vec2(0.06,0.008);
+
1324
+
1325 s1_leaf1_angle = 50;
+
1326
+
1327 s1_leaf2_angle = 50;
1328
-
1329 int spc = XMLloadint(s, "shoots_per_cordon");
-
1330 if (spc != nullvalue_i) {
-
1331 gobletgrapevineparameters.shoots_per_cordon = uint(spc);
-
1332 }
-
1333/*
-
1334 float spa = XMLloadfloat( s, "shoots_tip_angle" );
-
1335 if( spa != nullvalue_f ){
-
1336 gobletgrapevineparameters.shoots_tip_angle = uint(spa);
-
1337 }*/
+
1329 s1_leaf3_angle = 50;
+
1330
+
1331 s1_leaf_subdivisions = make_int2(20,2);
+
1332
+
1333 s1_leaf_texture_file = "plugins/canopygenerator/textures/s1_Sorghum_leaf.png";
+
1334
+
1335
+
1336 // stage 2
+
1337 s2_stem_length = 0.2;
1338
-
1339 float lsf = XMLloadfloat(s, "leaf_spacing_fraction");
-
1340 if (lsf != nullvalue_f) {
-
1341 gobletgrapevineparameters.leaf_spacing_fraction = lsf;
-
1342 }
-
1343
-
1344 float gr = XMLloadfloat(s, "grape_radius");
-
1345 if (gr != nullvalue_f) {
-
1346 gobletgrapevineparameters.grape_radius = gr;
-
1347 }
+
1339 s2_stem_radius = 0.003;
+
1340
+
1341 s2_stem_subdivisions = 10;
+
1342
+
1343 s2_leaf_size1 = make_vec2(0.25,0.02);
+
1344
+
1345 s2_leaf_size2 = make_vec2(0.14,0.02);
+
1346
+
1347 s2_leaf_size3 = make_vec2(0.2,0.015);
1348
-
1349 float clr = XMLloadfloat(s, "cluster_radius");
-
1350 if (clr != nullvalue_f) {
-
1351 gobletgrapevineparameters.cluster_radius = clr;
-
1352 }
-
1353
-
1354 RGBAcolor grape_color = XMLloadrgba(s, "grape_color");
-
1355 if (grape_color.a != 0 ) {
-
1356 gobletgrapevineparameters.grape_color = make_RGBcolor(grape_color.r,grape_color.g,grape_color.b);
-
1357 }
+
1349 s2_leaf_size4 = make_vec2(0.12,0.012);
+
1350
+
1351 s2_leaf_size5 = make_vec2(0.08,0.01);
+
1352
+
1353 s2_leaf1_angle = 25;
+
1354
+
1355 s2_leaf2_angle = 50;
+
1356
+
1357 s2_leaf3_angle = 15;
1358
-
1359 int grape_subdivisions = XMLloadint(s, "grape_subdivisions");
-
1360 if (grape_subdivisions != nullvalue_i) {
-
1361 gobletgrapevineparameters.grape_subdivisions = uint(grape_subdivisions);
-
1362 }
-
1363
-
1364 float plant_spacing = XMLloadfloat(s, "plant_spacing");
-
1365 if (plant_spacing != nullvalue_f) {
-
1366 gobletgrapevineparameters.plant_spacing = plant_spacing;
-
1367 }
-
1368
-
1369 float row_spacing = XMLloadfloat(s, "row_spacing");
-
1370 if (row_spacing != nullvalue_f) {
-
1371 gobletgrapevineparameters.row_spacing = row_spacing;
-
1372 }
+
1359 s2_leaf4_angle = 25;
+
1360
+
1361 s2_leaf5_angle = 10;
+
1362
+
1363 s2_leaf_subdivisions = make_int2(30,2);
+
1364
+
1365 s2_leaf_texture_file = "plugins/canopygenerator/textures/s2_Sorghum_leaf.png";
+
1366
+
1367 // stage 3
+
1368 s3_stem_length = 1.2;
+
1369
+
1370 s3_stem_radius = 0.01;
+
1371
+
1372 s3_stem_subdivisions = 10;
1373
-
1374 int2 plant_count = XMLloadint2(s, "plant_count");
-
1375 if (plant_count.x != nullvalue_i && plant_count.y != nullvalue_i) {
-
1376 gobletgrapevineparameters.plant_count = plant_count;
-
1377 }
-
1378
-
1379 vec3 canopy_origin = XMLloadvec3(s, "canopy_origin");
-
1380 if (canopy_origin.x != nullvalue_f && canopy_origin.y != nullvalue_f) {
-
1381 gobletgrapevineparameters.canopy_origin = canopy_origin;
-
1382 }
+
1374 s3_leaf_size = make_vec2(0.8,0.08);
+
1375
+
1376 s3_leaf_subdivisions = make_int2(30,2);
+
1377
+
1378 s3_number_of_leaves = 15;
+
1379
+
1380 s3_mean_leaf_angle = 45;
+
1381
+
1382 s3_leaf_texture_file = "plugins/canopygenerator/textures/s3_Sorghum_leaf.png";
1383
-
1384 float canopy_rotation = XMLloadfloat(s, "canopy_rotation");
-
1385 if (canopy_rotation != nullvalue_f) {
-
1386 gobletgrapevineparameters.canopy_rotation = canopy_rotation;
-
1387 }
+
1384 // stage 4
+
1385 s4_stem_length = 1.6;
+
1386
+
1387 s4_stem_radius = 0.01;
1388
-
1389
-
1390 buildCanopy(gobletgrapevineparameters);
-
1391
-
1392 }
-
1393
-
1394 //StrawberryParameters Canopy
-
1395 for (pugi::xml_node s = cgen.child("StrawberryParameters"); s; s = s.next_sibling("StrawberryParameters")) {
+
1389 s4_stem_subdivisions = 10;
+
1390
+
1391 s4_panicle_size = make_vec2(0.2,0.06);
+
1392
+
1393 s4_panicle_subdivisions = 5;
+
1394
+
1395 s4_seed_texture_file = "plugins/canopygenerator/textures/s4_Sorghum_seed.png";
1396
-
1397 StrawberryParameters strawberryparameters;
+
1397 s4_leaf_size = make_vec2(0.8,0.08);
1398
-
1399 float leaf_length = XMLloadfloat(s, "leaf_length");
-
1400 if (leaf_length != nullvalue_f) {
-
1401 strawberryparameters.leaf_length = leaf_length;
-
1402 }
-
1403
-
1404 int2 leaf_subdivisions = XMLloadint2(s, "leaf_subdivisions");
-
1405 if (leaf_subdivisions.x != nullvalue_i && leaf_subdivisions.y != nullvalue_i) {
-
1406 strawberryparameters.leaf_subdivisions = leaf_subdivisions;
-
1407 }
-
1408
-
1409 std::string leaf_texture_file = XMLloadstring(s, "leaf_texture_file");
-
1410 if ( leaf_texture_file != nullvalue_s ) {
-
1411 strawberryparameters.leaf_texture_file = leaf_texture_file;
-
1412 }
+
1399 s4_leaf_subdivisions = make_int2(30,2);
+
1400
+
1401 s4_number_of_leaves = 15;
+
1402
+
1403 s4_mean_leaf_angle = 40;
+
1404
+
1405 s4_leaf_texture_file = "plugins/canopygenerator/textures/s4_Sorghum_leaf.png";
+
1406
+
1407 // stage 5
+
1408 s5_stem_length = 2.5;
+
1409
+
1410 s5_stem_radius = 0.01;
+
1411
+
1412 s5_stem_bend = 0.15;
1413
-
1414 int stem_subdivisions = XMLloadint(s, "stem_subdivisions");
-
1415 if (stem_subdivisions != nullvalue_i) {
-
1416 strawberryparameters.stem_subdivisions = stem_subdivisions;
-
1417 }
-
1418
-
1419 float stem_radius = XMLloadfloat(s, "stem_radius");
-
1420 if (stem_radius != nullvalue_f) {
-
1421 strawberryparameters.stem_radius = stem_radius;
-
1422 }
+
1414 s5_stem_subdivisions = 10;
+
1415
+
1416 s5_panicle_size = make_vec2(0.3,0.08);
+
1417
+
1418 s5_panicle_subdivisions = 5;
+
1419
+
1420 s5_seed_texture_file = "plugins/canopygenerator/textures/s5_Sorghum_seed.png";
+
1421
+
1422 s5_leaf_size = make_vec2(0.9,0.125);
1423
-
1424 float h = XMLloadfloat(s, "plant_height");
-
1425 if (h != nullvalue_f) {
-
1426 strawberryparameters.plant_height = h;
-
1427 }
-
1428
-
1429 int r = XMLloadint(s, "stems_per_plant");
-
1430 if (r != nullvalue_i) {
-
1431 strawberryparameters.stems_per_plant = r;
-
1432 }
-
1433
-
1434 float gr = XMLloadfloat(s, "fruit_radius");
-
1435 if (gr != nullvalue_f) {
-
1436 strawberryparameters.fruit_radius = gr;
-
1437 }
+
1424 s5_leaf_subdivisions = make_int2(30,2);
+
1425
+
1426 s5_number_of_leaves = 24;
+
1427
+
1428 s5_mean_leaf_angle = 20; // std = 10 degrees
+
1429
+
1430 s5_leaf_texture_file = "plugins/canopygenerator/textures/s5_Sorghum_leaf.png";
+
1431
+
1432 // Canopy
+
1433 plant_spacing = 0.45;
+
1434
+
1435 row_spacing = 0.45;
+
1436
+
1437 plant_count = make_int2(10 ,10);
1438
-
1439 float clr = XMLloadfloat(s, "clusters_per_stem");
-
1440 if (clr != nullvalue_f) {
-
1441 strawberryparameters.clusters_per_stem = clr;
-
1442 }
-
1443
-
1444 int fruit_subdivisions = XMLloadint(s, "fruit_subdivisions");
-
1445 if (fruit_subdivisions != nullvalue_i) {
-
1446 strawberryparameters.fruit_subdivisions = uint(fruit_subdivisions);
-
1447 }
-
1448
-
1449 std::string fruit_texture_file = XMLloadstring(s, "fruit_texture_file");
-
1450 if ( fruit_texture_file != nullvalue_s ) {
-
1451 strawberryparameters.fruit_texture_file = fruit_texture_file;
-
1452 }
-
1453
-
1454 float plant_spacing = XMLloadfloat(s, "plant_spacing");
-
1455 if (plant_spacing != nullvalue_f) {
-
1456 strawberryparameters.plant_spacing = plant_spacing;
-
1457 }
+
1439}
+
+
1440
+
+
1441SorghumCanopyParameters::SorghumCanopyParameters(const pugi::xml_node canopy_node) : SorghumCanopyParameters(){
+
1442 readParametersFromXML(canopy_node);
+
1443}
+
+
1444
+
+
1445void SorghumCanopyParameters::readParametersFromXML(const pugi::xml_node canopy_node){
+
1446 BaseCanopyParameters::readParametersFromXML(canopy_node);
+
1447
+
1448 int new_sorghum_stage = XMLloadint(canopy_node, "sorghum_stage");
+
1449 if (new_sorghum_stage != nullvalue_i) {
+
1450 sorghum_stage = new_sorghum_stage;
+
1451 }
+
1452
+
1453 // STAGE 1
+
1454 float new_s1_stem_length = XMLloadint(canopy_node, "s1_stem_length");
+
1455 if (new_s1_stem_length != nullvalue_i) {
+
1456 s1_stem_length = new_s1_stem_length;
+
1457 }
1458
-
1459 float row_spacing = XMLloadfloat(s, "row_spacing");
-
1460 if (row_spacing != nullvalue_f) {
-
1461 strawberryparameters.row_spacing = row_spacing;
-
1462 }
+
1459 float new_s1_stem_radius = XMLloadfloat(canopy_node, "s1_stem_radius");
+
1460 if (new_s1_stem_radius != nullvalue_f) {
+
1461 s1_stem_radius = new_s1_stem_radius;
+
1462 }
1463
-
1464 int2 plant_count = XMLloadint2(s, "plant_count");
-
1465 if (plant_count.x != nullvalue_i && plant_count.y != nullvalue_i) {
-
1466 strawberryparameters.plant_count = plant_count;
-
1467 }
+
1464 int new_s1_stem_subdivisions = XMLloadint(canopy_node, "s1_stem_subdivisions");
+
1465 if (new_s1_stem_subdivisions != nullvalue_f) {
+
1466 s1_stem_subdivisions = uint(new_s1_stem_subdivisions);
+
1467 }
1468
-
1469 vec3 canopy_origin = XMLloadvec3(s, "canopy_origin");
-
1470 if (canopy_origin.x != nullvalue_f && canopy_origin.y != nullvalue_f) {
-
1471 strawberryparameters.canopy_origin = canopy_origin;
-
1472 }
+
1469 vec2 new_s1_leaf_size1 = XMLloadvec2(canopy_node, "s1_leaf_size1");
+
1470 if (new_s1_leaf_size1.x != nullvalue_f && new_s1_leaf_size1.y != nullvalue_f) {
+
1471 s1_leaf_size1 = new_s1_leaf_size1;
+
1472 }
1473
-
1474 float canopy_rotation = XMLloadfloat(s, "canopy_rotation");
-
1475 if (canopy_rotation != nullvalue_f) {
-
1476 strawberryparameters.canopy_rotation = canopy_rotation;
-
1477 }
+
1474 vec2 new_s1_leaf_size2 = XMLloadvec2(canopy_node, "s1_leaf_size2");
+
1475 if (new_s1_leaf_size2.x != nullvalue_f && new_s1_leaf_size2.y != nullvalue_f) {
+
1476 s1_leaf_size2 = new_s1_leaf_size2;
+
1477 }
1478
-
1479
-
1480 buildCanopy(strawberryparameters);
-
1481
-
1482 }
+
1479 vec2 new_s1_leaf_size3 = XMLloadvec2(canopy_node, "s1_leaf_size3");
+
1480 if (new_s1_leaf_size3.x != nullvalue_f && new_s1_leaf_size3.y != nullvalue_f) {
+
1481 s1_leaf_size3 = new_s1_leaf_size3;
+
1482 }
1483
-
1484 //TomatoParameters Canopy
-
1485 for (pugi::xml_node s = cgen.child("TomatoParameters"); s; s = s.next_sibling("TomatoParameters")) {
-
1486
-
1487 TomatoParameters tomatoparameters;
+
1484 float new_s1_leaf1_angle = XMLloadfloat(canopy_node, "s1_leaf1_angle");
+
1485 if (new_s1_leaf1_angle != nullvalue_f) {
+
1486 s1_leaf1_angle = new_s1_leaf1_angle;
+
1487 }
1488
-
1489 float leaf_length = XMLloadfloat(s, "leaf_length");
-
1490 if (leaf_length != nullvalue_f) {
-
1491 tomatoparameters.leaf_length = leaf_length;
-
1492 }
+
1489 float new_s1_leaf2_angle = XMLloadfloat(canopy_node, "s1_leaf2_angle");
+
1490 if (new_s1_leaf2_angle != nullvalue_f) {
+
1491 s1_leaf2_angle = new_s1_leaf2_angle;
+
1492 }
1493
-
1494 int2 leaf_subdivisions = XMLloadint2(s, "leaf_subdivisions");
-
1495 if (leaf_subdivisions.x != nullvalue_i && leaf_subdivisions.y != nullvalue_i) {
-
1496 tomatoparameters.leaf_subdivisions = leaf_subdivisions;
-
1497 }
+
1494 float new_s1_leaf3_angle = XMLloadfloat(canopy_node, "s1_leaf3_angle");
+
1495 if (new_s1_leaf3_angle != nullvalue_f) {
+
1496 s1_leaf3_angle = new_s1_leaf3_angle;
+
1497 }
1498
-
1499 std::string leaf_texture_file = XMLloadstring(s, "leaf_texture_file");
-
1500 if ( leaf_texture_file != nullvalue_s ) {
-
1501 tomatoparameters.leaf_texture_file = leaf_texture_file;
-
1502 }
+
1499 int2 new_s1_leaf_subdivisions = XMLloadint2(canopy_node, "s1_leaf_subdivisions");
+
1500 if (new_s1_leaf_subdivisions.x != nullvalue_i && new_s1_leaf_subdivisions.y != nullvalue_i) {
+
1501 s1_leaf_subdivisions = new_s1_leaf_subdivisions;
+
1502 }
1503
-
1504 RGBAcolor shoot_color = XMLloadrgba(s, "shoot_color");
-
1505 if (shoot_color.a != 0 ) {
-
1506 tomatoparameters.shoot_color = make_RGBcolor(shoot_color.r,shoot_color.g,shoot_color.b);
-
1507 }
+
1504 std::string new_s1_leaf_texture_file = XMLloadstring(canopy_node, "s1_leaf_texture_file");
+
1505 if (new_s1_leaf_texture_file.compare(nullvalue_s) != 0) {
+
1506 s1_leaf_texture_file = new_s1_leaf_texture_file;
+
1507 }
1508
-
1509 int shoot_subdivisions = XMLloadint(s, "shoot_subdivisions");
-
1510 if (shoot_subdivisions != nullvalue_i) {
-
1511 tomatoparameters.shoot_subdivisions = shoot_subdivisions;
-
1512 }
-
1513
-
1514 float h = XMLloadfloat(s, "plant_height");
-
1515 if (h != nullvalue_f) {
-
1516 tomatoparameters.plant_height = h;
-
1517 }
-
1518
-
1519 float gr = XMLloadfloat(s, "fruit_radius");
-
1520 if (gr != nullvalue_f) {
-
1521 tomatoparameters.fruit_radius = gr;
-
1522 }
-
1523
-
1524 RGBAcolor fruit_color = XMLloadrgba(s, "fruit_color");
-
1525 if (fruit_color.a != 0 ) {
-
1526 tomatoparameters.fruit_color = make_RGBcolor(fruit_color.r,fruit_color.g,fruit_color.b);
-
1527 }
-
1528
+
1509 // STAGE 2
+
1510 float new_s2_stem_length = XMLloadint(canopy_node, "s2_stem_length");
+
1511 if (new_s2_stem_length != nullvalue_i) {
+
1512 s2_stem_length = new_s2_stem_length;
+
1513 }
+
1514
+
1515 float new_s2_stem_radius = XMLloadfloat(canopy_node, "s2_stem_radius");
+
1516 if (new_s2_stem_radius != nullvalue_f) {
+
1517 s2_stem_radius = new_s2_stem_radius;
+
1518 }
+
1519
+
1520 int new_s2_stem_subdivisions = XMLloadint(canopy_node, "s2_stem_subdivisions");
+
1521 if (new_s2_stem_subdivisions != nullvalue_f) {
+
1522 s2_stem_subdivisions = uint(new_s2_stem_subdivisions);
+
1523 }
+
1524
+
1525 vec2 new_s2_leaf_size1 = XMLloadvec2(canopy_node, "s2_leaf_size1");
+
1526 if (new_s2_leaf_size1.x != nullvalue_f && new_s2_leaf_size1.y != nullvalue_f) {
+
1527 s2_leaf_size1 = new_s2_leaf_size1;
+
1528 }
1529
-
1530 int fruit_subdivisions = XMLloadint(s, "fruit_subdivisions");
-
1531 if (fruit_subdivisions != nullvalue_i) {
-
1532 tomatoparameters.fruit_subdivisions = uint(fruit_subdivisions);
-
1533 }
+
1530 vec2 new_s2_leaf_size2 = XMLloadvec2(canopy_node, "s2_leaf_size2");
+
1531 if (new_s2_leaf_size2.x != nullvalue_f && new_s2_leaf_size2.y != nullvalue_f) {
+
1532 s2_leaf_size2 = new_s2_leaf_size2;
+
1533 }
1534
-
1535 float plant_spacing = XMLloadfloat(s, "plant_spacing");
-
1536 if (plant_spacing != nullvalue_f) {
-
1537 tomatoparameters.plant_spacing = plant_spacing;
-
1538 }
+
1535 vec2 new_s2_leaf_size3 = XMLloadvec2(canopy_node, "s2_leaf_size3");
+
1536 if (new_s2_leaf_size3.x != nullvalue_f && new_s2_leaf_size3.y != nullvalue_f) {
+
1537 s2_leaf_size3 = new_s2_leaf_size3;
+
1538 }
1539
-
1540 float row_spacing = XMLloadfloat(s, "row_spacing");
-
1541 if (row_spacing != nullvalue_f) {
-
1542 tomatoparameters.row_spacing = row_spacing;
-
1543 }
+
1540 vec2 new_s2_leaf_size4 = XMLloadvec2(canopy_node, "s2_leaf_size4");
+
1541 if (new_s2_leaf_size4.x != nullvalue_f && new_s2_leaf_size4.y != nullvalue_f) {
+
1542 s2_leaf_size4 = new_s2_leaf_size4;
+
1543 }
1544
-
1545 int2 plant_count = XMLloadint2(s, "plant_count");
-
1546 if (plant_count.x != nullvalue_i && plant_count.y != nullvalue_i) {
-
1547 tomatoparameters.plant_count = plant_count;
-
1548 }
+
1545 vec2 new_s2_leaf_size5 = XMLloadvec2(canopy_node, "s2_leaf_size5");
+
1546 if (new_s2_leaf_size5.x != nullvalue_f && new_s2_leaf_size5.y != nullvalue_f) {
+
1547 s2_leaf_size5 = new_s2_leaf_size5;
+
1548 }
1549
-
1550 vec3 canopy_origin = XMLloadvec3(s, "canopy_origin");
-
1551 if (canopy_origin.x != nullvalue_f && canopy_origin.y != nullvalue_f) {
-
1552 tomatoparameters.canopy_origin = canopy_origin;
-
1553 }
+
1550 float new_s2_leaf1_angle = XMLloadfloat(canopy_node, "s2_leaf1_angle");
+
1551 if (new_s2_leaf1_angle != nullvalue_f) {
+
1552 s2_leaf1_angle = new_s2_leaf1_angle;
+
1553 }
1554
-
1555 float canopy_rotation = XMLloadfloat(s, "canopy_rotation");
-
1556 if (canopy_rotation != nullvalue_f) {
-
1557 tomatoparameters.canopy_rotation = canopy_rotation;
-
1558 }
+
1555 float new_s2_leaf2_angle = XMLloadfloat(canopy_node, "s2_leaf2_angle");
+
1556 if (new_s2_leaf2_angle != nullvalue_f) {
+
1557 s2_leaf2_angle = new_s2_leaf2_angle;
+
1558 }
1559
-
1560
-
1561 buildCanopy(tomatoparameters);
-
1562
-
1563 }
+
1560 float new_s2_leaf3_angle = XMLloadfloat(canopy_node, "s2_leaf3_angle");
+
1561 if (new_s2_leaf3_angle != nullvalue_f) {
+
1562 s2_leaf3_angle = new_s2_leaf3_angle;
+
1563 }
1564
-
1565 //WalnutCanopyParameters Canopy
-
1566 for (pugi::xml_node s = cgen.child("WalnutCanopyParameters"); s; s = s.next_sibling("WalnutCanopyParameters")) {
-
1567
-
1568 WalnutCanopyParameters walnutcanopyparameters;
+
1565 float new_s2_leaf4_angle = XMLloadfloat(canopy_node, "s2_leaf4_angle");
+
1566 if (new_s2_leaf4_angle != nullvalue_f) {
+
1567 s2_leaf4_angle = new_s2_leaf4_angle;
+
1568 }
1569
-
1570 float leaf_length = XMLloadfloat(s, "leaf_length");
-
1571 if (leaf_length != nullvalue_f) {
-
1572 walnutcanopyparameters.leaf_length = leaf_length;
-
1573 }
+
1570 float new_s2_leaf5_angle = XMLloadfloat(canopy_node, "s2_leaf5_angle");
+
1571 if (new_s2_leaf3_angle != nullvalue_f) {
+
1572 s2_leaf5_angle = new_s2_leaf5_angle;
+
1573 }
1574
-
1575 int2 leaf_subdivisions = XMLloadint2(s, "leaf_subdivisions");
-
1576 if (leaf_subdivisions.x != nullvalue_i && leaf_subdivisions.y != nullvalue_i) {
-
1577 walnutcanopyparameters.leaf_subdivisions = leaf_subdivisions;
-
1578 }
+
1575 int2 new_s2_leaf_subdivisions = XMLloadint2(canopy_node, "s2_leaf_subdivisions");
+
1576 if (new_s2_leaf_subdivisions.x != nullvalue_i && new_s2_leaf_subdivisions.y != nullvalue_i) {
+
1577 s2_leaf_subdivisions = new_s2_leaf_subdivisions;
+
1578 }
1579
-
1580 std::string leaf_texture_file = XMLloadstring(s, "leaf_texture_file");
-
1581 if ( leaf_texture_file != nullvalue_s ) {
-
1582 walnutcanopyparameters.leaf_texture_file = leaf_texture_file;
-
1583 }
+
1580 std::string new_s2_leaf_texture_file = XMLloadstring(canopy_node, "s2_leaf_texture_file");
+
1581 if (new_s2_leaf_texture_file.compare(nullvalue_s) != 0) {
+
1582 s2_leaf_texture_file = new_s2_leaf_texture_file;
+
1583 }
1584
-
1585 int wood_subdivisions = XMLloadint(s, "wood_subdivisions");
-
1586 if (wood_subdivisions != nullvalue_i) {
-
1587 walnutcanopyparameters.wood_subdivisions = wood_subdivisions;
-
1588 }
-
1589
+
1585 // STAGE 3
+
1586 float new_s3_stem_length = XMLloadint(canopy_node, "s3_stem_length");
+
1587 if (new_s3_stem_length != nullvalue_i) {
+
1588 s3_stem_length = new_s3_stem_length;
+
1589 }
1590
-
1591 float trunk_radius = XMLloadfloat(s, "trunk_radius");
-
1592 if (trunk_radius != nullvalue_f) {
-
1593 walnutcanopyparameters.trunk_radius = trunk_radius;
-
1594 }
+
1591 float new_s3_stem_radius = XMLloadfloat(canopy_node, "s3_stem_radius");
+
1592 if (new_s3_stem_radius != nullvalue_f) {
+
1593 s3_stem_radius = new_s3_stem_radius;
+
1594 }
1595
-
1596 float trunk_height = XMLloadfloat(s, "trunk_height");
-
1597 if (trunk_height != nullvalue_f) {
-
1598 walnutcanopyparameters.trunk_height = trunk_height;
-
1599 }
+
1596 int new_s3_stem_subdivisions = XMLloadint(canopy_node, "s3_stem_subdivisions");
+
1597 if (new_s3_stem_subdivisions != nullvalue_f) {
+
1598 s3_stem_subdivisions = uint(new_s3_stem_subdivisions);
+
1599 }
1600
-
1601 vec3 branch_length = XMLloadvec3(s, "branch_length");
-
1602 if (branch_length.x != nullvalue_f && branch_length.y != nullvalue_f) {
-
1603 walnutcanopyparameters.branch_length = branch_length;
-
1604 }
+
1601 vec2 new_s3_leaf_size = XMLloadvec2(canopy_node, "s3_leaf_size");
+
1602 if (new_s3_leaf_size.x != nullvalue_f && new_s3_leaf_size.y != nullvalue_f) {
+
1603 s3_leaf_size = new_s3_leaf_size;
+
1604 }
1605
-
1606 std::string fruit_texture_file = XMLloadstring(s, "fruit_texture_file");
-
1607 if ( fruit_texture_file != nullvalue_s ) {
-
1608 walnutcanopyparameters.fruit_texture_file = fruit_texture_file;
-
1609 }
+
1606 int2 new_s3_leaf_subdivisions = XMLloadint2(canopy_node, "s3_leaf_subdivisions");
+
1607 if (new_s3_leaf_subdivisions.x != nullvalue_i && new_s3_leaf_subdivisions.y != nullvalue_i) {
+
1608 s3_leaf_subdivisions = new_s3_leaf_subdivisions;
+
1609 }
1610
-
1611 int fruit_subdivisions = XMLloadint(s, "fruit_subdivisions");
-
1612 if (fruit_subdivisions != nullvalue_i) {
-
1613 walnutcanopyparameters.fruit_subdivisions = uint(fruit_subdivisions);
-
1614 }
+
1611 int new_s3_number_of_leaves = XMLloadint(canopy_node, "s3_number_of_leaves");
+
1612 if (new_s3_number_of_leaves != nullvalue_i) {
+
1613 s3_number_of_leaves = new_s3_number_of_leaves;
+
1614 }
1615
-
1616 float plant_spacing = XMLloadfloat(s, "plant_spacing");
-
1617 if (plant_spacing != nullvalue_f) {
-
1618 walnutcanopyparameters.plant_spacing = plant_spacing;
-
1619 }
+
1616 float new_s3_mean_leaf_angle = XMLloadfloat(canopy_node, "s3_mean_leaf_angle");
+
1617 if (new_s3_mean_leaf_angle != nullvalue_f) {
+
1618 s3_mean_leaf_angle = new_s3_mean_leaf_angle;
+
1619 }
1620
-
1621 float row_spacing = XMLloadfloat(s, "row_spacing");
-
1622 if (row_spacing != nullvalue_f) {
-
1623 walnutcanopyparameters.row_spacing = row_spacing;
-
1624 }
+
1621 std::string new_s3_leaf_texture_file = XMLloadstring(canopy_node, "s3_leaf_texture_file");
+
1622 if (new_s3_leaf_texture_file.compare(nullvalue_s) != 0) {
+
1623 s3_leaf_texture_file = new_s3_leaf_texture_file;
+
1624 }
1625
-
1626 int2 plant_count = XMLloadint2(s, "plant_count");
-
1627 if (plant_count.x != nullvalue_i && plant_count.y != nullvalue_i) {
-
1628 walnutcanopyparameters.plant_count = plant_count;
-
1629 }
-
1630
-
1631 vec3 canopy_origin = XMLloadvec3(s, "canopy_origin");
-
1632 if (canopy_origin.x != nullvalue_f && canopy_origin.y != nullvalue_f) {
-
1633 walnutcanopyparameters.canopy_origin = canopy_origin;
-
1634 }
-
1635
-
1636 float canopy_rotation = XMLloadfloat(s, "canopy_rotation");
-
1637 if (canopy_rotation != nullvalue_f) {
-
1638 walnutcanopyparameters.canopy_rotation = canopy_rotation;
-
1639 }
-
1640
+
1626 // STAGE 4
+
1627 float new_s4_stem_length = XMLloadint(canopy_node, "s4_stem_length");
+
1628 if (new_s4_stem_length != nullvalue_i) {
+
1629 s4_stem_length = new_s4_stem_length;
+
1630 }
+
1631
+
1632 float new_s4_stem_radius = XMLloadfloat(canopy_node, "s4_stem_radius");
+
1633 if (new_s4_stem_radius != nullvalue_f) {
+
1634 s4_stem_radius = new_s4_stem_radius;
+
1635 }
+
1636
+
1637 int new_s4_stem_subdivisions = XMLloadint(canopy_node, "s4_stem_subdivisions");
+
1638 if (new_s4_stem_subdivisions != nullvalue_f) {
+
1639 s4_stem_subdivisions = uint(new_s4_stem_subdivisions);
+
1640 }
1641
-
1642 buildCanopy(walnutcanopyparameters);
-
1643
-
1644 }
-
1645
-
1646 //SorghumCanopyParameters Canopy
-
1647 for (pugi::xml_node s = cgen.child("SorghumCanopyParameters"); s; s = s.next_sibling("SorghumCanopyParameters")) {
-
1648
-
1649 SorghumCanopyParameters sorghumcanopyparameters;
-
1650
-
1651 int sorghum_stage = XMLloadint(s, "sorghum_stage");
-
1652 if (sorghum_stage != nullvalue_i) {
-
1653 sorghumcanopyparameters.sorghum_stage = sorghum_stage;
-
1654 }
-
1655 // STAGE 1
-
1656 float s1_stem_length = XMLloadint(s, "s1_stem_length");
-
1657 if (s1_stem_length != nullvalue_i) {
-
1658 sorghumcanopyparameters.s1_stem_length = s1_stem_length;
-
1659 }
-
1660
-
1661 float s1_stem_radius = XMLloadfloat(s, "s1_stem_radius");
-
1662 if (s1_stem_radius != nullvalue_f) {
-
1663 sorghumcanopyparameters.s1_stem_radius = s1_stem_radius;
-
1664 }
-
1665
-
1666 int s1_stem_subdivisions = XMLloadint(s, "s1_stem_subdivisions");
-
1667 if (s1_stem_subdivisions != nullvalue_f) {
-
1668 sorghumcanopyparameters.s1_stem_subdivisions = uint(s1_stem_subdivisions);
-
1669 }
-
1670
-
1671 vec2 s1_leaf_size1 = XMLloadvec2(s, "s1_leaf_size1");
-
1672 if (s1_leaf_size1.x != nullvalue_f && s1_leaf_size1.y != nullvalue_f) {
-
1673 sorghumcanopyparameters.s1_leaf_size1 = s1_leaf_size1;
-
1674 }
-
1675
-
1676 vec2 s1_leaf_size2 = XMLloadvec2(s, "s1_leaf_size2");
-
1677 if (s1_leaf_size2.x != nullvalue_f && s1_leaf_size2.y != nullvalue_f) {
-
1678 sorghumcanopyparameters.s1_leaf_size2 = s1_leaf_size2;
-
1679 }
-
1680
-
1681 vec2 s1_leaf_size3 = XMLloadvec2(s, "s1_leaf_size3");
-
1682 if (s1_leaf_size3.x != nullvalue_f && s1_leaf_size3.y != nullvalue_f) {
-
1683 sorghumcanopyparameters.s1_leaf_size3 = s1_leaf_size3;
-
1684 }
-
1685
-
1686 float s1_leaf1_angle = XMLloadfloat(s, "s1_leaf1_angle");
-
1687 if (s1_leaf1_angle != nullvalue_f) {
-
1688 sorghumcanopyparameters.s1_leaf1_angle = s1_leaf1_angle;
-
1689 }
-
1690
-
1691 float s1_leaf2_angle = XMLloadfloat(s, "s1_leaf2_angle");
-
1692 if (s1_leaf2_angle != nullvalue_f) {
-
1693 sorghumcanopyparameters.s1_leaf2_angle = s1_leaf2_angle;
-
1694 }
-
1695
-
1696 float s1_leaf3_angle = XMLloadfloat(s, "s1_leaf3_angle");
-
1697 if (s1_leaf3_angle != nullvalue_f) {
-
1698 sorghumcanopyparameters.s1_leaf3_angle = s1_leaf3_angle;
-
1699 }
-
1700
-
1701 int2 s1_leaf_subdivisions = XMLloadint2(s, "s1_leaf_subdivisions");
-
1702 if (s1_leaf_subdivisions.x != nullvalue_i && s1_leaf_subdivisions.y != nullvalue_i) {
-
1703 sorghumcanopyparameters.s1_leaf_subdivisions = s1_leaf_subdivisions;
-
1704 }
-
1705
-
1706 std::string s1_leaf_texture_file = XMLloadstring(s, "s1_leaf_texture_file");
-
1707 if (s1_leaf_texture_file.compare(nullvalue_s) != 0) {
-
1708 sorghumcanopyparameters.s1_leaf_texture_file = s1_leaf_texture_file;
-
1709 }
-
1710 // STAGE 2
-
1711 float s2_stem_length = XMLloadint(s, "s2_stem_length");
-
1712 if (s2_stem_length != nullvalue_i) {
-
1713 sorghumcanopyparameters.s2_stem_length = s2_stem_length;
-
1714 }
-
1715
-
1716 float s2_stem_radius = XMLloadfloat(s, "s2_stem_radius");
-
1717 if (s2_stem_radius != nullvalue_f) {
-
1718 sorghumcanopyparameters.s2_stem_radius = s2_stem_radius;
-
1719 }
-
1720
-
1721 int s2_stem_subdivisions = XMLloadint(s, "s2_stem_subdivisions");
-
1722 if (s2_stem_subdivisions != nullvalue_f) {
-
1723 sorghumcanopyparameters.s2_stem_subdivisions = uint(s2_stem_subdivisions);
-
1724 }
-
1725
-
1726 vec2 s2_leaf_size1 = XMLloadvec2(s, "s2_leaf_size1");
-
1727 if (s2_leaf_size1.x != nullvalue_f && s2_leaf_size1.y != nullvalue_f) {
-
1728 sorghumcanopyparameters.s2_leaf_size1 = s2_leaf_size1;
-
1729 }
-
1730
-
1731 vec2 s2_leaf_size2 = XMLloadvec2(s, "s2_leaf_size2");
-
1732 if (s2_leaf_size2.x != nullvalue_f && s2_leaf_size2.y != nullvalue_f) {
-
1733 sorghumcanopyparameters.s2_leaf_size2 = s2_leaf_size2;
-
1734 }
-
1735
-
1736 vec2 s2_leaf_size3 = XMLloadvec2(s, "s2_leaf_size3");
-
1737 if (s2_leaf_size3.x != nullvalue_f && s2_leaf_size3.y != nullvalue_f) {
-
1738 sorghumcanopyparameters.s2_leaf_size3 = s2_leaf_size3;
-
1739 }
-
1740
-
1741 vec2 s2_leaf_size4 = XMLloadvec2(s, "s2_leaf_size4");
-
1742 if (s2_leaf_size4.x != nullvalue_f && s2_leaf_size4.y != nullvalue_f) {
-
1743 sorghumcanopyparameters.s2_leaf_size4 = s2_leaf_size4;
-
1744 }
-
1745
-
1746 vec2 s2_leaf_size5 = XMLloadvec2(s, "s2_leaf_size5");
-
1747 if (s2_leaf_size5.x != nullvalue_f && s2_leaf_size5.y != nullvalue_f) {
-
1748 sorghumcanopyparameters.s2_leaf_size5 = s2_leaf_size5;
-
1749 }
-
1750
-
1751 float s2_leaf1_angle = XMLloadfloat(s, "s2_leaf1_angle");
-
1752 if (s2_leaf1_angle != nullvalue_f) {
-
1753 sorghumcanopyparameters.s2_leaf1_angle = s2_leaf1_angle;
-
1754 }
-
1755
-
1756 float s2_leaf2_angle = XMLloadfloat(s, "s2_leaf2_angle");
-
1757 if (s2_leaf2_angle != nullvalue_f) {
-
1758 sorghumcanopyparameters.s2_leaf2_angle = s2_leaf2_angle;
-
1759 }
-
1760
-
1761 float s2_leaf3_angle = XMLloadfloat(s, "s2_leaf3_angle");
-
1762 if (s2_leaf3_angle != nullvalue_f) {
-
1763 sorghumcanopyparameters.s2_leaf3_angle = s2_leaf3_angle;
-
1764 }
-
1765
-
1766 float s2_leaf4_angle = XMLloadfloat(s, "s2_leaf4_angle");
-
1767 if (s2_leaf4_angle != nullvalue_f) {
-
1768 sorghumcanopyparameters.s2_leaf4_angle = s2_leaf4_angle;
-
1769 }
+
1642 vec2 new_s4_panicle_size = XMLloadvec2(canopy_node, "s4_panicle_size");
+
1643 if (new_s4_panicle_size.x != nullvalue_f && new_s4_panicle_size.y != nullvalue_f) {
+
1644 s4_panicle_size = new_s4_panicle_size;
+
1645 }
+
1646
+
1647 int new_s4_panicle_subdivisions = XMLloadint(canopy_node, "s4_panicle_subdivisions");
+
1648 if (new_s4_panicle_subdivisions != nullvalue_f) {
+
1649 s4_panicle_subdivisions = uint(new_s4_panicle_subdivisions);
+
1650 }
+
1651
+
1652 std::string new_s4_seed_texture_file = XMLloadstring(canopy_node, "s4_seed_texture_file");
+
1653 if (new_s4_seed_texture_file.compare(nullvalue_s) != 0) {
+
1654 s4_seed_texture_file = new_s4_seed_texture_file;
+
1655 }
+
1656
+
1657 vec2 new_s4_leaf_size = XMLloadvec2(canopy_node, "s4_leaf_size");
+
1658 if (new_s4_leaf_size.x != nullvalue_f && new_s4_leaf_size.y != nullvalue_f) {
+
1659 s4_leaf_size = new_s4_leaf_size;
+
1660 }
+
1661
+
1662 int2 new_s4_leaf_subdivisions = XMLloadint2(canopy_node, "s4_leaf_subdivisions");
+
1663 if (new_s4_leaf_subdivisions.x != nullvalue_i && new_s4_leaf_subdivisions.y != nullvalue_i) {
+
1664 s4_leaf_subdivisions = new_s4_leaf_subdivisions;
+
1665 }
+
1666
+
1667 int new_s4_number_of_leaves = XMLloadint(canopy_node, "s4_number_of_leaves");
+
1668 if (new_s4_number_of_leaves != nullvalue_i) {
+
1669 s4_number_of_leaves = new_s4_number_of_leaves;
+
1670 }
+
1671
+
1672 float new_s4_mean_leaf_angle = XMLloadfloat(canopy_node, "s4_mean_leaf_angle");
+
1673 if (new_s4_mean_leaf_angle != nullvalue_f) {
+
1674 s4_mean_leaf_angle = new_s4_mean_leaf_angle;
+
1675 }
+
1676
+
1677 std::string new_s4_leaf_texture_file = XMLloadstring(canopy_node, "s4_leaf_texture_file");
+
1678 if (new_s4_leaf_texture_file.compare(nullvalue_s) != 0) {
+
1679 s4_leaf_texture_file = new_s4_leaf_texture_file;
+
1680 }
+
1681
+
1682 // STAGE 5
+
1683 float new_s5_stem_length = XMLloadint(canopy_node, "s5_stem_length");
+
1684 if (new_s5_stem_length != nullvalue_i) {
+
1685 s5_stem_length = new_s5_stem_length;
+
1686 }
+
1687
+
1688 float new_s5_stem_radius = XMLloadfloat(canopy_node, "s5_stem_radius");
+
1689 if (new_s5_stem_radius != nullvalue_f) {
+
1690 s5_stem_radius = new_s5_stem_radius;
+
1691 }
+
1692
+
1693 float new_s5_stem_bend = XMLloadfloat(canopy_node, "s5_stem_bend");
+
1694 if (new_s5_stem_bend != nullvalue_f) {
+
1695 s5_stem_bend = new_s5_stem_bend;
+
1696 }
+
1697
+
1698 int new_s5_stem_subdivisions = XMLloadint(canopy_node, "s5_stem_subdivisions");
+
1699 if (new_s5_stem_subdivisions != nullvalue_f) {
+
1700 s5_stem_subdivisions = uint(new_s5_stem_subdivisions);
+
1701 }
+
1702
+
1703 vec2 new_s5_panicle_size = XMLloadvec2(canopy_node, "s5_panicle_size");
+
1704 if (new_s5_panicle_size.x != nullvalue_f && new_s5_panicle_size.y != nullvalue_f) {
+
1705 s5_panicle_size = new_s5_panicle_size;
+
1706 }
+
1707
+
1708 int new_s5_panicle_subdivisions = XMLloadint(canopy_node, "s5_panicle_subdivisions");
+
1709 if (new_s5_panicle_subdivisions != nullvalue_f) {
+
1710 s5_panicle_subdivisions = uint(new_s5_panicle_subdivisions);
+
1711 }
+
1712
+
1713 std::string new_s5_seed_texture_file = XMLloadstring(canopy_node, "s5_seed_texture_file");
+
1714 if (new_s5_seed_texture_file.compare(nullvalue_s) != 0) {
+
1715 s5_seed_texture_file = new_s5_seed_texture_file;
+
1716 }
+
1717
+
1718 vec2 new_s5_leaf_size = XMLloadvec2(canopy_node, "s5_leaf_size");
+
1719 if (new_s5_leaf_size.x != nullvalue_f && new_s5_leaf_size.y != nullvalue_f) {
+
1720 s5_leaf_size = new_s5_leaf_size;
+
1721 }
+
1722
+
1723 int2 new_s5_leaf_subdivisions = XMLloadint2(canopy_node, "s5_leaf_subdivisions");
+
1724 if (new_s5_leaf_subdivisions.x != nullvalue_i && new_s5_leaf_subdivisions.y != nullvalue_i) {
+
1725 s5_leaf_subdivisions = new_s5_leaf_subdivisions;
+
1726 }
+
1727
+
1728 int new_s5_number_of_leaves = XMLloadint(canopy_node, "s5_number_of_leaves");
+
1729 if (new_s5_number_of_leaves != nullvalue_i) {
+
1730 s5_number_of_leaves = new_s5_number_of_leaves;
+
1731 }
+
1732
+
1733 float new_s5_mean_leaf_angle = XMLloadfloat(canopy_node, "s5_mean_leaf_angle");
+
1734 if (new_s5_mean_leaf_angle != nullvalue_f) {
+
1735 s5_mean_leaf_angle = new_s5_mean_leaf_angle;
+
1736 }
+
1737
+
1738 std::string new_s5_leaf_texture_file = XMLloadstring(canopy_node, "s5_leaf_texture_file");
+
1739 if (new_s5_leaf_texture_file.compare(nullvalue_s) != 0) {
+
1740 s5_leaf_texture_file = new_s5_leaf_texture_file;
+
1741 }
+
1742
+
1743 float new_plant_spacing = XMLloadfloat(canopy_node, "plant_spacing");
+
1744 if (new_plant_spacing != nullvalue_f) {
+
1745 plant_spacing = new_plant_spacing;
+
1746 }
+
1747
+
1748 float new_row_spacing = XMLloadfloat(canopy_node, "row_spacing");
+
1749 if (new_row_spacing != nullvalue_f) {
+
1750 row_spacing = new_row_spacing;
+
1751 }
+
1752
+
1753 int2 new_plant_count = XMLloadint2(canopy_node, "plant_count");
+
1754 if (new_plant_count.x != nullvalue_i && new_plant_count.y != nullvalue_i) {
+
1755 plant_count = new_plant_count;
+
1756 }
+
1757}
+
+
1758
+
+
1759void SorghumCanopyParameters::buildPlant(CanopyGenerator& canopy_generator, helios::vec3 origin){
+
1760 canopy_generator.sorghum(*this, origin);
+
1761}
+
+
1762
+
+
1763void SorghumCanopyParameters::buildCanopy(CanopyGenerator& canopy_generator){
+
1764 canopy_generator.buildCanopy(*this);
+
1765}
+
+
1766
+
+
1767BeanParameters::BeanParameters() : BaseCanopyParameters() {
+
1768
+
1769 leaf_length = 0.075;
1770
-
1771 float s2_leaf5_angle = XMLloadfloat(s, "s2_leaf5_angle");
-
1772 if (s2_leaf3_angle != nullvalue_f) {
-
1773 sorghumcanopyparameters.s2_leaf5_angle = s2_leaf5_angle;
-
1774 }
-
1775
-
1776 int2 s2_leaf_subdivisions = XMLloadint2(s, "s2_leaf_subdivisions");
-
1777 if (s2_leaf_subdivisions.x != nullvalue_i && s2_leaf_subdivisions.y != nullvalue_i) {
-
1778 sorghumcanopyparameters.s2_leaf_subdivisions = s2_leaf_subdivisions;
-
1779 }
+
1771 leaf_subdivisions = make_int2(6, 4);
+
1772
+
1773 leaf_texture_file = "plugins/canopygenerator/textures/BeanLeaf.png";
+
1774
+
1775 shoot_color = make_RGBcolor(0.6471, 0.7333, 0.1176);
+
1776
+
1777 shoot_subdivisions = 10;
+
1778
+
1779 stem_radius = 0.004;
1780
-
1781 std::string s2_leaf_texture_file = XMLloadstring(s, "s2_leaf_texture_file");
-
1782 if (s2_leaf_texture_file.compare(nullvalue_s) != 0) {
-
1783 sorghumcanopyparameters.s2_leaf_texture_file = s2_leaf_texture_file;
-
1784 }
-
1785 // STAGE 3
-
1786 float s3_stem_length = XMLloadint(s, "s3_stem_length");
-
1787 if (s3_stem_length != nullvalue_i) {
-
1788 sorghumcanopyparameters.s3_stem_length = s3_stem_length;
-
1789 }
+
1781 stem_length = 0.075;
+
1782
+
1783 leaflet_length = 0.075;
+
1784
+
1785 pod_length = 0; //pods not supported yet
+
1786
+
1787 pod_color = make_RGBcolor(0.7, 0.28, 0.2);
+
1788
+
1789 pod_subdivisions = 8;
1790
-
1791 float s3_stem_radius = XMLloadfloat(s, "s3_stem_radius");
-
1792 if (s3_stem_radius != nullvalue_f) {
-
1793 sorghumcanopyparameters.s3_stem_radius = s3_stem_radius;
-
1794 }
-
1795
-
1796 int s3_stem_subdivisions = XMLloadint(s, "s3_stem_subdivisions");
-
1797 if (s3_stem_subdivisions != nullvalue_f) {
-
1798 sorghumcanopyparameters.s3_stem_subdivisions = uint(s3_stem_subdivisions);
-
1799 }
+
1791 plant_spacing = 0.15;
+
1792
+
1793 row_spacing = 0.6;
+
1794
+
1795 plant_count = make_int2(3, 3);
+
1796
+
1797 germination_probability = 1.f;
+
1798
+
1799}
+
1800
-
1801 vec2 s3_leaf_size = XMLloadvec2(s, "s3_leaf_size");
-
1802 if (s3_leaf_size.x != nullvalue_f && s3_leaf_size.y != nullvalue_f) {
-
1803 sorghumcanopyparameters.s3_leaf_size = s3_leaf_size;
-
1804 }
-
1805
-
1806 int2 s3_leaf_subdivisions = XMLloadint2(s, "s3_leaf_subdivisions");
-
1807 if (s3_leaf_subdivisions.x != nullvalue_i && s3_leaf_subdivisions.y != nullvalue_i) {
-
1808 sorghumcanopyparameters.s3_leaf_subdivisions = s3_leaf_subdivisions;
-
1809 }
-
1810
-
1811 int s3_number_of_leaves = XMLloadint(s, "s3_number_of_leaves");
-
1812 if (s3_number_of_leaves != nullvalue_i) {
-
1813 sorghumcanopyparameters.s3_number_of_leaves = s3_number_of_leaves;
-
1814 }
-
1815
-
1816 float s3_mean_leaf_angle = XMLloadfloat(s, "s3_mean_leaf_angle");
-
1817 if (s3_mean_leaf_angle != nullvalue_f) {
-
1818 sorghumcanopyparameters.s3_mean_leaf_angle = s3_mean_leaf_angle;
-
1819 }
-
1820
-
1821 std::string s3_leaf_texture_file = XMLloadstring(s, "s3_leaf_texture_file");
-
1822 if (s3_leaf_texture_file.compare(nullvalue_s) != 0) {
-
1823 sorghumcanopyparameters.s3_leaf_texture_file = s3_leaf_texture_file;
-
1824 }
-
1825
-
1826 // STAGE 4
-
1827 float s4_stem_length = XMLloadint(s, "s4_stem_length");
-
1828 if (s4_stem_length != nullvalue_i) {
-
1829 sorghumcanopyparameters.s4_stem_length = s4_stem_length;
-
1830 }
-
1831
-
1832 float s4_stem_radius = XMLloadfloat(s, "s4_stem_radius");
-
1833 if (s4_stem_radius != nullvalue_f) {
-
1834 sorghumcanopyparameters.s4_stem_radius = s4_stem_radius;
-
1835 }
-
1836
-
1837 int s4_stem_subdivisions = XMLloadint(s, "s4_stem_subdivisions");
-
1838 if (s4_stem_subdivisions != nullvalue_f) {
-
1839 sorghumcanopyparameters.s4_stem_subdivisions = uint(s4_stem_subdivisions);
-
1840 }
-
1841
-
1842 vec2 s4_panicle_size = XMLloadvec2(s, "s4_panicle_size");
-
1843 if (s4_panicle_size.x != nullvalue_f && s4_panicle_size.y != nullvalue_f) {
-
1844 sorghumcanopyparameters.s4_panicle_size = s4_panicle_size;
-
1845 }
-
1846
-
1847 int s4_panicle_subdivisions = XMLloadint(s, "s4_panicle_subdivisions");
-
1848 if (s4_panicle_subdivisions != nullvalue_f) {
-
1849 sorghumcanopyparameters.s4_panicle_subdivisions = uint(s4_panicle_subdivisions);
-
1850 }
-
1851
-
1852 std::string s4_seed_texture_file = XMLloadstring(s, "s4_seed_texture_file");
-
1853 if (s4_seed_texture_file.compare(nullvalue_s) != 0) {
-
1854 sorghumcanopyparameters.s4_seed_texture_file = s4_seed_texture_file;
-
1855 }
-
1856
-
1857 vec2 s4_leaf_size = XMLloadvec2(s, "s4_leaf_size");
-
1858 if (s4_leaf_size.x != nullvalue_f && s4_leaf_size.y != nullvalue_f) {
-
1859 sorghumcanopyparameters.s4_leaf_size = s4_leaf_size;
-
1860 }
-
1861
-
1862 int2 s4_leaf_subdivisions = XMLloadint2(s, "s4_leaf_subdivisions");
-
1863 if (s4_leaf_subdivisions.x != nullvalue_i && s4_leaf_subdivisions.y != nullvalue_i) {
-
1864 sorghumcanopyparameters.s4_leaf_subdivisions = s4_leaf_subdivisions;
-
1865 }
-
1866
-
1867 int s4_number_of_leaves = XMLloadint(s, "s4_number_of_leaves");
-
1868 if (s4_number_of_leaves != nullvalue_i) {
-
1869 sorghumcanopyparameters.s4_number_of_leaves = s4_number_of_leaves;
-
1870 }
-
1871
-
1872 float s4_mean_leaf_angle = XMLloadfloat(s, "s4_mean_leaf_angle");
-
1873 if (s4_mean_leaf_angle != nullvalue_f) {
-
1874 sorghumcanopyparameters.s4_mean_leaf_angle = s4_mean_leaf_angle;
-
1875 }
-
1876
-
1877 std::string s4_leaf_texture_file = XMLloadstring(s, "s4_leaf_texture_file");
-
1878 if (s4_leaf_texture_file.compare(nullvalue_s) != 0) {
-
1879 sorghumcanopyparameters.s4_leaf_texture_file = s4_leaf_texture_file;
-
1880 }
-
1881
-
1882 // STAGE 5
-
1883 float s5_stem_length = XMLloadint(s, "s5_stem_length");
-
1884 if (s5_stem_length != nullvalue_i) {
-
1885 sorghumcanopyparameters.s5_stem_length = s5_stem_length;
-
1886 }
+
+
1801BeanParameters::BeanParameters(const pugi::xml_node canopy_node) : BeanParameters(){
+
1802 readParametersFromXML(canopy_node);
+
1803}
+
+
1804
+
+
1805void BeanParameters::readParametersFromXML(const pugi::xml_node canopy_node){
+
1806 BaseCanopyParameters::readParametersFromXML(canopy_node);
+
1807
+
1808 float new_leaf_length = XMLloadfloat(canopy_node, "leaf_length");
+
1809 if (new_leaf_length != nullvalue_f) {
+
1810 leaf_length = new_leaf_length;
+
1811 }
+
1812
+
1813 int2 new_leaf_subdivisions = XMLloadint2(canopy_node, "leaf_subdivisions");
+
1814 if (new_leaf_subdivisions.x != nullvalue_i && new_leaf_subdivisions.y != nullvalue_i) {
+
1815 leaf_subdivisions = new_leaf_subdivisions;
+
1816 }
+
1817
+
1818 std::string new_leaf_texture_file = XMLloadstring(canopy_node, "leaf_texture_file");
+
1819 if ( new_leaf_texture_file != nullvalue_s ) {
+
1820 leaf_texture_file = new_leaf_texture_file;
+
1821 }
+
1822
+
1823 int new_shoot_subdivisions = XMLloadint(canopy_node, "shoot_subdivisions");
+
1824 if (new_shoot_subdivisions != nullvalue_i) {
+
1825 shoot_subdivisions = new_shoot_subdivisions;
+
1826 }
+
1827
+
1828 float new_stem_radius = XMLloadfloat(canopy_node, "stem_radius");
+
1829 if (new_stem_radius != nullvalue_f) {
+
1830 stem_radius = new_stem_radius;
+
1831 }
+
1832
+
1833 RGBAcolor new_shoot_color = XMLloadrgba(canopy_node, "shoot_color");
+
1834 if( new_shoot_color.a != 0 ){
+
1835 shoot_color = make_RGBcolor(new_shoot_color.r, new_shoot_color.g, new_shoot_color.b);
+
1836 }
+
1837
+
1838 float new_stem_length = XMLloadfloat(canopy_node, "stem_length");
+
1839 if (new_stem_length != nullvalue_f ) {
+
1840 stem_length = new_stem_length;
+
1841 }
+
1842
+
1843 float new_leaflet_length = XMLloadfloat(canopy_node, "leaflet_length");
+
1844 if (new_leaflet_length != nullvalue_f ) {
+
1845 leaflet_length = new_leaflet_length;
+
1846 }
+
1847
+
1848 float new_pod_length = XMLloadfloat(canopy_node, "pod_length");
+
1849 if (new_pod_length != nullvalue_f ) {
+
1850 pod_length = new_pod_length;
+
1851 }
+
1852
+
1853 RGBAcolor new_pod_color = XMLloadrgba(canopy_node, "pod_color");
+
1854 if( new_pod_color.a != 0 ){
+
1855 pod_color = make_RGBcolor(new_pod_color.r, new_pod_color.g, new_pod_color.b);
+
1856 }
+
1857
+
1858 int new_pod_subdivisions = XMLloadint(canopy_node, "pod_subdivisions");
+
1859 if (new_pod_subdivisions != nullvalue_i ) {
+
1860 pod_subdivisions = new_pod_subdivisions;
+
1861 }
+
1862
+
1863 float new_plant_spacing = XMLloadfloat(canopy_node, "plant_spacing");
+
1864 if (new_plant_spacing != nullvalue_f) {
+
1865 plant_spacing = new_plant_spacing;
+
1866 }
+
1867
+
1868 float new_row_spacing = XMLloadfloat(canopy_node, "row_spacing");
+
1869 if (new_row_spacing != nullvalue_f) {
+
1870 row_spacing = new_row_spacing;
+
1871 }
+
1872
+
1873 int2 new_plant_count = XMLloadint2(canopy_node, "plant_count");
+
1874 if (new_plant_count.x != nullvalue_i && new_plant_count.y != nullvalue_i) {
+
1875 plant_count = new_plant_count;
+
1876 }
+
1877
+
1878 float new_germination_probability = XMLloadfloat(canopy_node, "germination_probability");
+
1879 if (new_germination_probability != nullvalue_f) {
+
1880 germination_probability = new_germination_probability;
+
1881 }
+
1882}
+
+
1883
+
+
1884void BeanParameters::buildPlant(CanopyGenerator& canopy_generator, helios::vec3 origin){
+
1885 canopy_generator.bean(*this, origin);
+
1886}
+
1887
-
1888 float s5_stem_radius = XMLloadfloat(s, "s5_stem_radius");
-
1889 if (s5_stem_radius != nullvalue_f) {
-
1890 sorghumcanopyparameters.s5_stem_radius = s5_stem_radius;
-
1891 }
-
1892
-
1893 float s5_stem_bend = XMLloadfloat(s, "s5_stem_bend");
-
1894 if (s5_stem_bend != nullvalue_f) {
-
1895 sorghumcanopyparameters.s5_stem_bend = s5_stem_bend;
-
1896 }
-
1897
-
1898 int s5_stem_subdivisions = XMLloadint(s, "s5_stem_subdivisions");
-
1899 if (s5_stem_subdivisions != nullvalue_f) {
-
1900 sorghumcanopyparameters.s5_stem_subdivisions = uint(s5_stem_subdivisions);
-
1901 }
-
1902
-
1903 vec2 s5_panicle_size = XMLloadvec2(s, "s5_panicle_size");
-
1904 if (s5_panicle_size.x != nullvalue_f && s5_panicle_size.y != nullvalue_f) {
-
1905 sorghumcanopyparameters.s5_panicle_size = s5_panicle_size;
-
1906 }
+
+
1888void BeanParameters::buildCanopy(CanopyGenerator& canopy_generator){
+
1889 canopy_generator.buildCanopy(*this);
+
1890}
+
+
1891
+
+
1892 CanopyGenerator::CanopyGenerator( helios::Context* m_context ){
+
1893
+
1894 context = m_context;
+
1895
+
1896 //seed the random number generator
+
1897 unsigned seed = std::chrono::system_clock::now().time_since_epoch().count();
+
1898 generator.seed(seed);
+
1899
+
1900 printmessages = true;
+
1901
+
1902 enable_element_labels = false;
+
1903
+
1904}
+
+
1905
+
+
1906int CanopyGenerator::selfTest(){
1907
-
1908 int s5_panicle_subdivisions = XMLloadint(s, "s5_panicle_subdivisions");
-
1909 if (s5_panicle_subdivisions != nullvalue_f) {
-
1910 sorghumcanopyparameters.s5_panicle_subdivisions = uint(s5_panicle_subdivisions);
-
1911 }
-
1912
-
1913 std::string s5_seed_texture_file = XMLloadstring(s, "s5_seed_texture_file");
-
1914 if (s5_seed_texture_file.compare(nullvalue_s) != 0) {
-
1915 sorghumcanopyparameters.s5_seed_texture_file = s5_seed_texture_file;
-
1916 }
-
1917
-
1918 vec2 s5_leaf_size = XMLloadvec2(s, "s5_leaf_size");
-
1919 if (s5_leaf_size.x != nullvalue_f && s5_leaf_size.y != nullvalue_f) {
-
1920 sorghumcanopyparameters.s5_leaf_size = s5_leaf_size;
-
1921 }
-
1922
-
1923 int2 s5_leaf_subdivisions = XMLloadint2(s, "s5_leaf_subdivisions");
-
1924 if (s5_leaf_subdivisions.x != nullvalue_i && s5_leaf_subdivisions.y != nullvalue_i) {
-
1925 sorghumcanopyparameters.s5_leaf_subdivisions = s5_leaf_subdivisions;
-
1926 }
-
1927
-
1928 int s5_number_of_leaves = XMLloadint(s, "s5_number_of_leaves");
-
1929 if (s5_number_of_leaves != nullvalue_i) {
-
1930 sorghumcanopyparameters.s5_number_of_leaves = s5_number_of_leaves;
-
1931 }
-
1932
-
1933 float s5_mean_leaf_angle = XMLloadfloat(s, "s5_mean_leaf_angle");
-
1934 if (s5_mean_leaf_angle != nullvalue_f) {
-
1935 sorghumcanopyparameters.s5_mean_leaf_angle = s5_mean_leaf_angle;
-
1936 }
-
1937
-
1938 std::string s5_leaf_texture_file = XMLloadstring(s, "s5_leaf_texture_file");
-
1939 if (s5_leaf_texture_file.compare(nullvalue_s) != 0) {
-
1940 sorghumcanopyparameters.s5_leaf_texture_file = s5_leaf_texture_file;
-
1941 }
+
1908 std::cout << "Running canopy generator plug-in self-test..." << std::endl;
+
1909
+
1910 Context context_test;
+
1911
+
1912 std::cout << "Generating default homogeneous canopy..." << std::flush;
+
1913
+
1914 CanopyGenerator canopygenerator_0(&context_test);
+
1915 canopygenerator_0.disableMessages();
+
1916 HomogeneousCanopyParameters params_0;
+
1917 canopygenerator_0.buildCanopy(params_0);
+
1918 context_test.deletePrimitive(context_test.getAllUUIDs());
+
1919
+
1920 std::cout << "done." << std::endl;
+
1921
+
1922 std::cout << "Generating default spherical crowns canopy..." << std::flush;
+
1923
+
1924 CanopyGenerator canopygenerator_1(&context_test);
+
1925 canopygenerator_1.disableMessages();
+
1926 SphericalCrownsCanopyParameters params_1;
+
1927 canopygenerator_1.buildCanopy(params_1);
+
1928 context_test.deletePrimitive(context_test.getAllUUIDs());
+
1929
+
1930 std::cout << "done." << std::endl;
+
1931
+
1932 std::cout << "Generating default VSP grapevine canopy..." << std::flush;
+
1933
+
1934 CanopyGenerator canopygenerator_2(&context_test);
+
1935 canopygenerator_2.disableMessages();
+
1936 VSPGrapevineParameters params_2;
+
1937 params_2.grape_radius = 0;
+
1938 canopygenerator_2.buildCanopy(params_2);
+
1939 context_test.deletePrimitive(context_test.getAllUUIDs());
+
1940
+
1941 std::cout << "done." << std::endl;
1942
-
1943 float plant_spacing = XMLloadfloat(s, "plant_spacing");
-
1944 if (plant_spacing != nullvalue_f) {
-
1945 sorghumcanopyparameters.plant_spacing = plant_spacing;
-
1946 }
-
1947
-
1948 float row_spacing = XMLloadfloat(s, "row_spacing");
-
1949 if (row_spacing != nullvalue_f) {
-
1950 sorghumcanopyparameters.row_spacing = row_spacing;
-
1951 }
-
1952
-
1953 int2 plant_count = XMLloadint2(s, "plant_count");
-
1954 if (plant_count.x != nullvalue_i && plant_count.y != nullvalue_i) {
-
1955 sorghumcanopyparameters.plant_count = plant_count;
-
1956 }
-
1957
-
1958 vec3 canopy_origin = XMLloadvec3(s, "canopy_origin");
-
1959 if (canopy_origin.x != nullvalue_f && canopy_origin.y != nullvalue_f) {
-
1960 sorghumcanopyparameters.canopy_origin = canopy_origin;
-
1961 }
+
1943 std::cout << "Generating default split trellis grapevine canopy..." << std::flush;
+
1944
+
1945 CanopyGenerator canopygenerator_3(&context_test);
+
1946 canopygenerator_3.disableMessages();
+
1947 SplitGrapevineParameters params_3;
+
1948 params_3.grape_radius = 0;
+
1949 canopygenerator_3.buildCanopy(params_3);
+
1950 context_test.deletePrimitive(context_test.getAllUUIDs());
+
1951
+
1952 std::cout << "done." << std::endl;
+
1953
+
1954 std::cout << "Generating default unilateral trellis grapevine canopy..." << std::flush;
+
1955
+
1956 CanopyGenerator canopygenerator_4(&context_test);
+
1957 canopygenerator_4.disableMessages();
+
1958 UnilateralGrapevineParameters params_4;
+
1959 params_4.grape_radius = 0;
+
1960 canopygenerator_4.buildCanopy(params_4);
+
1961 context_test.deletePrimitive(context_test.getAllUUIDs());
1962
-
1963 buildCanopy(sorghumcanopyparameters);
+
1963 std::cout << "done." << std::endl;
1964
-
1965 }
+
1965 std::cout << "Generating default goblet trellis grapevine canopy..." << std::flush;
1966
-
1967 //BeanParameters Canopy
-
1968 for (pugi::xml_node s = cgen.child("BeanParameters"); s; s = s.next_sibling("BeanParameters")) {
-
1969
-
1970 BeanParameters beanparameters;
-
1971
-
1972 float leaf_length = XMLloadfloat(s, "leaf_length");
-
1973 if (leaf_length != nullvalue_f) {
-
1974 beanparameters.leaf_length = leaf_length;
-
1975 }
-
1976
-
1977 int2 leaf_subdivisions = XMLloadint2(s, "leaf_subdivisions");
-
1978 if (leaf_subdivisions.x != nullvalue_i && leaf_subdivisions.y != nullvalue_i) {
-
1979 beanparameters.leaf_subdivisions = leaf_subdivisions;
-
1980 }
-
1981
-
1982 std::string leaf_texture_file = XMLloadstring(s, "leaf_texture_file");
-
1983 if ( leaf_texture_file != nullvalue_s ) {
-
1984 beanparameters.leaf_texture_file = leaf_texture_file;
-
1985 }
-
1986
-
1987 int shoot_subdivisions = XMLloadint(s, "shoot_subdivisions");
-
1988 if (shoot_subdivisions != nullvalue_i) {
-
1989 beanparameters.shoot_subdivisions = shoot_subdivisions;
-
1990 }
-
1991
-
1992 float stem_radius = XMLloadfloat(s, "stem_radius");
-
1993 if (stem_radius != nullvalue_f) {
-
1994 beanparameters.stem_radius = stem_radius;
-
1995 }
+
1967 CanopyGenerator canopygenerator_5(&context_test);
+
1968 canopygenerator_5.disableMessages();
+
1969 GobletGrapevineParameters params_5;
+
1970 params_5.grape_radius = 0;
+
1971 canopygenerator_5.buildCanopy(params_5);
+
1972 context_test.deletePrimitive(context_test.getAllUUIDs());
+
1973
+
1974 std::cout << "done." << std::endl;
+
1975
+
1976 std::cout << "Generating default strawberry canopy..." << std::flush;
+
1977
+
1978 CanopyGenerator canopygenerator_7(&context_test);
+
1979 canopygenerator_7.disableMessages();
+
1980 StrawberryParameters params_7;
+
1981 canopygenerator_7.buildCanopy(params_7);
+
1982 context_test.deletePrimitive(context_test.getAllUUIDs());
+
1983
+
1984 std::cout << "done." << std::endl;
+
1985
+
1986 std::cout << "Generating default walnut tree canopy (minus nuts)..." << std::flush;
+
1987
+
1988 CanopyGenerator canopygenerator_8(&context_test);
+
1989 canopygenerator_8.disableMessages();
+
1990 WalnutCanopyParameters params_8;
+
1991 params_8.fruit_radius = 0.f;
+
1992 canopygenerator_8.buildCanopy(params_8);
+
1993 context_test.deletePrimitive(context_test.getAllUUIDs());
+
1994
+
1995 std::cout << "done." << std::endl;
1996
-
1997 RGBAcolor shoot_color = XMLloadrgba(s, "shoot_color");
-
1998 if( shoot_color.a != 0 ){
-
1999 beanparameters.shoot_color = make_RGBcolor(shoot_color.r,shoot_color.g,shoot_color.b);
-
2000 }
-
2001
-
2002 float stem_length = XMLloadfloat(s, "stem_length");
-
2003 if (stem_length != nullvalue_f ) {
-
2004 beanparameters.stem_length = stem_length;
-
2005 }
+
1997 std::cout << "Generating default sorghum plant canopy..." << std::flush;
+
1998
+
1999 CanopyGenerator canopygenerator_9(&context_test);
+
2000 canopygenerator_9.disableMessages();
+
2001 SorghumCanopyParameters params_9;
+
2002 canopygenerator_9.buildCanopy(params_9);
+
2003 context_test.deletePrimitive( context_test.getAllUUIDs() );
+
2004
+
2005 std::cout << "done." << std::endl;
2006
-
2007 float leaflet_length = XMLloadfloat(s, "leaflet_length");
-
2008 if (leaflet_length != nullvalue_f ) {
-
2009 beanparameters.leaflet_length = leaflet_length;
-
2010 }
-
2011
-
2012 float pod_length = XMLloadfloat(s, "pod_length");
-
2013 if (pod_length != nullvalue_f ) {
-
2014 beanparameters.pod_length = pod_length;
-
2015 }
-
2016
-
2017 RGBAcolor pod_color = XMLloadrgba(s, "pod_color");
-
2018 if( pod_color.a != 0 ){
-
2019 beanparameters.pod_color = make_RGBcolor(pod_color.r,pod_color.g,pod_color.b);
-
2020 }
-
2021
-
2022 int pod_subdivisions = XMLloadint(s, "pod_subdivisions");
-
2023 if (pod_subdivisions != nullvalue_i ) {
-
2024 beanparameters.pod_subdivisions = pod_subdivisions;
-
2025 }
-
2026
-
2027 float plant_spacing = XMLloadfloat(s, "plant_spacing");
-
2028 if (plant_spacing != nullvalue_f) {
-
2029 beanparameters.plant_spacing = plant_spacing;
-
2030 }
+
2007 std::cout << "Generating homogeneous canopy with randomly deleted primitives..." << std::flush;
+
2008
+
2009 CanopyGenerator canopygenerator_6(&context_test);
+
2010 canopygenerator_6.disableMessages();
+
2011 HomogeneousCanopyParameters params_6;
+
2012 canopygenerator_6.buildCanopy(params_6);
+
2013
+
2014 std::vector<uint> UUIDs_leaves = flatten( canopygenerator_6.getLeafUUIDs(0) );
+
2015
+
2016 context_test.deletePrimitive(UUIDs_leaves.at(0));
+
2017 context_test.deletePrimitive(UUIDs_leaves.at(11));
+
2018 context_test.deletePrimitive(UUIDs_leaves.at(23));
+
2019 context_test.deletePrimitive(UUIDs_leaves.back());
+
2020
+
2021 UUIDs_leaves = flatten( canopygenerator_6.getLeafUUIDs(0) );
+
2022
+
2023 bool fail_flag = false;
+
2024 for( uint UUID : UUIDs_leaves ){
+
2025 if( !context_test.doesPrimitiveExist( UUID ) ){
+
2026 fail_flag = true;
+
2027 }
+
2028 }
+
2029
+
2030 std::vector<uint> UUIDs_all = canopygenerator_6.getAllUUIDs(0);
2031
-
2032 float row_spacing = XMLloadfloat(s, "row_spacing");
-
2033 if (row_spacing != nullvalue_f) {
-
2034 beanparameters.row_spacing = row_spacing;
-
2035 }
-
2036
-
2037 int2 plant_count = XMLloadint2(s, "plant_count");
-
2038 if (plant_count.x != nullvalue_i && plant_count.y != nullvalue_i) {
-
2039 beanparameters.plant_count = plant_count;
-
2040 }
-
2041
-
2042 float germination_probability = XMLloadfloat(s, "germination_probability");
-
2043 if (germination_probability != nullvalue_f) {
-
2044 beanparameters.germination_probability = germination_probability;
-
2045 }
-
2046
-
2047 vec3 canopy_origin = XMLloadvec3(s, "canopy_origin");
-
2048 if (canopy_origin.x != nullvalue_f && canopy_origin.y != nullvalue_f) {
-
2049 beanparameters.canopy_origin = canopy_origin;
-
2050 }
-
2051
-
2052 float canopy_rotation = XMLloadfloat(s, "canopy_rotation");
-
2053 if (canopy_rotation != nullvalue_f) {
-
2054 beanparameters.canopy_rotation = canopy_rotation;
-
2055 }
-
2056
-
2057 buildCanopy(beanparameters);
+
2032 fail_flag = false;
+
2033 for( uint p : UUIDs_all ){
+
2034 if( !context_test.doesPrimitiveExist( p ) ){
+
2035 fail_flag = true;
+
2036 }
+
2037 }
+
2038
+
2039 context_test.deletePrimitive(context_test.getAllUUIDs());
+
2040
+
2041 std::cout << "done." << std::endl;
+
2042
+
2043 if( fail_flag ){
+
2044 std::cout << "failed." << std::endl;
+
2045 return 1;
+
2046 }else{
+
2047 std::cout << "passed." << std::endl;
+
2048 return 0;
+
2049 }
+
2050
+
2051}
+
+
2052
+
2053template <typename CanopyType, typename... Args>
+
+
2054void CanopyGenerator::storeCanopyParameters(Args&&... args){
+
2055 static_assert(std::is_base_of<BaseCanopyParameters, CanopyType>::value, "CanopyType must inherit from BaseCanopyParameters");
+
2056 canopy_parameters_list.push_back(std::make_shared<CanopyType>(std::forward<Args>(args)...));
+
2057}
+
2058
-
2059 }
-
2060
-
2061 //Ground
-
2062 for (pugi::xml_node s = cgen.child("Ground"); s; s = s.next_sibling("Ground")) {
-
2063
-
2064 vec3 origin = XMLloadvec3(s, "origin");
-
2065 if (origin.x == nullvalue_f || origin.y == nullvalue_f || origin.z == nullvalue_f) {
-
2066 origin = make_vec3(0, 0, 0);
-
2067 if (printmessages) {
-
2068 std::cout << "WARNING: origin not provided for ground in file " << filename << std::endl;
-
2069 }
-
2070 }
-
2071
-
2072 vec2 extent = XMLloadvec2(s, "extent");
-
2073 if (extent.x == nullvalue_f || extent.y == nullvalue_f) {
-
2074 extent = make_vec2(1, 1);
-
2075 if (printmessages) {
-
2076 std::cout << "WARNING: horizontal extent not provided for ground in file " << filename << std::endl;
-
2077 }
-
2078 }
+
2059std::vector<std::shared_ptr<BaseCanopyParameters>> CanopyGenerator::getCanopyParametersList(){
+
2060 std::vector<std::shared_ptr<BaseCanopyParameters>> params_list;
+
2061 for (const auto& params : canopy_parameters_list) {
+
2062 params_list.push_back(params);
+
2063 }
+
2064 return params_list;
+
2065}
+
2066
+
+
2067void CanopyGenerator::loadXML( const char* filename, bool build ){
+
2068
+
2069 if( printmessages ){
+
2070 std::cout << "Reading XML file: " << filename << "..." << std::flush;
+
2071 }
+
2072
+
2073 //Check if file exists
+
2074 std::ifstream f(filename);
+
2075 if( !f.good() ){
+
2076 std::cerr << "failed." << std::endl;
+
2077 throw( std::runtime_error("XML file " + std::string(filename) + " does not exist.") );
+
2078 }
2079
-
2080 int2 texture_subtiles = XMLloadint2(s, "texture_subtiles");
-
2081 if (texture_subtiles.x == nullvalue_i || texture_subtiles.y == nullvalue_i) {
-
2082 texture_subtiles = make_int2(1, 1);
-
2083 }
-
2084
-
2085 int2 texture_subpatches = XMLloadint2(s, "texture_subpatches");
-
2086 if (texture_subpatches.x == nullvalue_i || texture_subpatches.y == nullvalue_i) {
-
2087 texture_subpatches = make_int2(1, 1);
-
2088 }
-
2089
-
2090 std::string texturefile = XMLloadstring(s, "ground_texture_file");
-
2091 if ( texturefile == nullvalue_s ) {
-
2092 texturefile = "plugins/canopygenerator/textures/dirt.jpg";
-
2093 if (printmessages) {
-
2094 std::cout << "WARNING: texture map file not provided for ground in file " << filename << std::endl;
-
2095 }
-
2096 }
-
2097
-
2098 float rotation = XMLloadfloat(s, "rotation");
-
2099 if (rotation == nullvalue_f) {
-
2100 rotation = 0;
-
2101 }
-
2102
-
2103 buildGround(origin, extent, texture_subtiles, texture_subpatches, texturefile.c_str(), rotation);
-
2104
-
2105 }
-
2106
-
2107 }
-
2108
-
2109 std::cout << "done." << std::endl;
-
2110
-
2111}
-
+
2080 // Using "pugixml" parser. See pugixml.org
+
2081 pugi::xml_document xmldoc;
+
2082
+
2083 //load file
+
2084 pugi::xml_parse_result result = xmldoc.load_file(filename);
+
2085
+
2086 //error checking
+
2087 if (!result){
+
2088 std::cout << "failed." << std::endl;
+
2089 throw( std::runtime_error("XML file " + std::string(filename) + " parsed with errors, attribute value: [" + xmldoc.child("node").attribute("attr").value() + "]\nError description: " + result.description() + "\n"));
+
2090 }
+
2091
+
2092 pugi::xml_node helios = xmldoc.child("helios");
+
2093
+
2094 if( helios.empty() ){
+
2095 std::cout << "failed." << std::endl;
+
2096 throw(std::runtime_error("ERROR (loadXML): XML file must have tag '<helios> ... </helios>' bounding all other tags."));
+
2097 }
+
2098
+
2099 //looping over any Canopy Generator blocks specified in XML file
+
2100 for (pugi::xml_node cgen = helios.child("canopygenerator"); cgen; cgen = cgen.next_sibling("CanopyGenerator")) {
+
2101
+
2102 //looping over any canopy types specified
+
2103
+
2104 //Homogeneous Canopy
+
2105 for (pugi::xml_node s = cgen.child("HomogeneousCanopyParameters"); s; s = s.next_sibling(
+
2106 "HomogeneousCanopyParameters")) {
+
2107
+
2108 HomogeneousCanopyParameters homogeneouscanopyparameters(s);
+
2109 storeCanopyParameters<HomogeneousCanopyParameters>(homogeneouscanopyparameters);
+
2110 if (build)
+
2111 buildCanopy(homogeneouscanopyparameters);
2112
-
-
2113void CanopyGenerator::buildGround(const vec3 &ground_origin, const vec2 &ground_extent, const int2 &texture_subtiles, const int2 &texture_subpatches, const char* ground_texture_file ){
-
2114 buildGround( ground_origin, ground_extent, texture_subtiles, texture_subpatches, ground_texture_file, 0.f );
-
2115}
-
-
2116
-
-
2117void CanopyGenerator::buildGround(const vec3 &ground_origin, const vec2 &ground_extent, const int2 &texture_subtiles, const int2 &texture_subpatches, const char* ground_texture_file, float ground_rotation ){
-
2118
-
2119 if( printmessages ){
-
2120 std::cout << "Ground geometry..." << std::flush;
-
2121 }
+
2113 }
+
2114
+
2115 //Spherical Canopy
+
2116 for (pugi::xml_node s = cgen.child("SphericalCrownsCanopyParameters"); s; s = s.next_sibling("SphericalCrownsCanopyParameters")) {
+
2117
+
2118 SphericalCrownsCanopyParameters sphericalcrownscanopyparameters(s);
+
2119 storeCanopyParameters<SphericalCrownsCanopyParameters>(sphericalcrownscanopyparameters);
+
2120 if (build)
+
2121 buildCanopy(sphericalcrownscanopyparameters);
2122
-
2123 vec2 dx_tile( ground_extent.x/float(texture_subtiles.x), ground_extent.y/float(texture_subtiles.y) );
+
2123 }
2124
-
2125 vec2 dx_subpatch( dx_tile.x/float(texture_subpatches.x), dx_tile.y/float(texture_subpatches.y) );
-
2126
-
2127 std::vector<uint> UUIDs;
-
2128 for( int j=0; j<texture_subtiles.y; j++ ){
-
2129 for( int i=0; i<texture_subtiles.x; i++ ){
-
2130
-
2131 vec3 center = ground_origin + make_vec3( -0.5f*ground_extent.x+(float(i)+0.5f)*dx_tile.x, -0.5f*ground_extent.y+(float(j)+0.5f)*dx_tile.y, 0 );
+
2125 //Conical Canopy
+
2126 for (pugi::xml_node s = cgen.child("ConicalCrownsCanopyParameters"); s; s = s.next_sibling("ConicalCrownsCanopyParameters")) {
+
2127
+
2128 ConicalCrownsCanopyParameters conicalcrownscanopyparameters(s);
+
2129 storeCanopyParameters<ConicalCrownsCanopyParameters>(conicalcrownscanopyparameters);
+
2130 if (build)
+
2131 buildCanopy(conicalcrownscanopyparameters);
2132
-
2133 if( ground_rotation!=0 ){
-
2134 center = rotatePointAboutLine( center, ground_origin, make_vec3(0,0,1), ground_rotation );
-
2135 }
-
2136
-
2137 UUIDs = context->addTile( center, dx_tile, make_SphericalCoord(0,-ground_rotation), texture_subpatches, ground_texture_file );
+
2133 }
+
2134
+
2135
+
2136 //VSP Grapevine Canopy
+
2137 for (pugi::xml_node s = cgen.child("VSPGrapevineParameters"); s; s = s.next_sibling("VSPGrapevineParameters")) {
2138
-
2139 UUID_ground.insert( UUID_ground.begin(), UUIDs.begin(), UUIDs.end() );
-
2140
-
2141 }
-
2142 }
+
2139 VSPGrapevineParameters vspgrapevineparameters(s);
+
2140 storeCanopyParameters<VSPGrapevineParameters>(vspgrapevineparameters);
+
2141 if (build)
+
2142 buildCanopy(vspgrapevineparameters);
2143
-
2144 if( printmessages ){
-
2145 std::cout << "done." << std::endl;
-
2146 std::cout << "Ground consists of " << UUID_ground.size() << " total primitives." << std::endl;
-
2147 }
-
2148
-
2149}
-
-
2150
-
-
2151void CanopyGenerator::buildCanopy(const HomogeneousCanopyParameters &params ){
-
2152
-
2153 if( printmessages ){
-
2154 std::cout << "Building homogeneous canopy..." << std::flush;
-
2155 }
+
2144 }
+
2145
+
2146 //Split Grapevine Canopy
+
2147 for (pugi::xml_node s = cgen.child("SplitGrapevineParameters"); s; s = s.next_sibling(
+
2148 "SplitGrapevineParameters")) {
+
2149
+
2150 SplitGrapevineParameters splitgrapevineparameters(s);
+
2151 storeCanopyParameters<SplitGrapevineParameters>(splitgrapevineparameters);
+
2152 if (build)
+
2153 buildCanopy(splitgrapevineparameters);
+
2154
+
2155 }
2156
-
2157 std::uniform_real_distribution<float> unif_distribution;
-
2158
-
2159 UUID_leaf.resize(1);
-
2160
-
2161 float solidFractionx;
-
2162 if(params.leaf_texture_file.empty()){
-
2163 solidFractionx = 1.0;
-
2164 }else{
-
2165 helios::Texture texture(params.leaf_texture_file.c_str());
-
2166 solidFractionx = texture.getSolidFraction();
-
2167 }
+
2157
+
2158 //UnilateralGrapevineParameters Canopy
+
2159 for (pugi::xml_node s = cgen.child("UnilateralGrapevineParameters"); s; s = s.next_sibling(
+
2160 "UnilateralGrapevineParameters")) {
+
2161
+
2162 UnilateralGrapevineParameters unilateralgrapevineparameters(s);
+
2163 storeCanopyParameters<UnilateralGrapevineParameters>(unilateralgrapevineparameters);
+
2164 if (build)
+
2165 buildCanopy(unilateralgrapevineparameters);
+
2166
+
2167 }
2168
-
2169 float leafArea = params.leaf_size.x*params.leaf_size.y*solidFractionx;
-
2170 int Nleaves = (int)lroundf(params.leaf_area_index*params.canopy_extent.x*params.canopy_extent.y/leafArea);
-
2171
-
2172 float Lmax = sqrtf(params.leaf_size.x*params.leaf_size.x + params.leaf_size.y*params.leaf_size.y);
+
2169
+
2170 //GobletGrapevineParameters Canopy
+
2171 for (pugi::xml_node s = cgen.child("GobletGrapevineParameters"); s; s = s.next_sibling(
+
2172 "GobletGrapevineParameters")) {
2173
-
2174 uint ID0;
-
2175 if( params.leaf_texture_file.empty() ){
-
2176 ID0 = context->addTileObject( make_vec3(0,0,0), params.leaf_size, make_SphericalCoord(0,0), params.leaf_subdivisions, params.leaf_color );
-
2177 }else{
-
2178 ID0 = context->addTileObject( make_vec3(0,0,0), params.leaf_size, make_SphericalCoord(0,0), params.leaf_subdivisions, params.leaf_texture_file.c_str() );
-
2179 }
+
2174 GobletGrapevineParameters gobletgrapevineparameters(s);
+
2175 storeCanopyParameters<GobletGrapevineParameters>(gobletgrapevineparameters);
+
2176 if (build)
+
2177 buildCanopy(gobletgrapevineparameters);
+
2178
+
2179 }
2180
-
2181 for( int i=0; i<Nleaves; i++ ){
-
2182
-
2183 float rx = unif_distribution(generator);
-
2184 float ry = unif_distribution(generator);
-
2185 float rz = unif_distribution(generator);
-
2186
-
2187 float rp = unif_distribution(generator);
-
2188
-
2189 vec3 position;
-
2190
+
2181
+
2182 //WhiteSpruceCanopyParameters Canopy
+
2183 for (pugi::xml_node s = cgen.child("WhiteSpruceCanopyParameters"); s; s = s.next_sibling("WhiteSpruceCanopyParameters")) {
+
2184
+
2185 WhiteSpruceCanopyParameters whitesprucecanopyparameters(s);
+
2186 storeCanopyParameters<WhiteSpruceCanopyParameters>(whitesprucecanopyparameters);
+
2187 if (build)
+
2188 buildCanopy(whitesprucecanopyparameters);
+
2189
+
2190 }
2191
-
2192 if(params.buffer == "z"){
-
2193 position = params.canopy_origin + make_vec3( (-0.5f+rx)*params.canopy_extent.x, (-0.5f+ry)*params.canopy_extent.y,0.5f*Lmax+rz*(params.canopy_height-Lmax) );
-
2194 }else if(params.buffer == "xyz"){
-
2195 position = params.canopy_origin + make_vec3( 0.5f*Lmax + (rx)*(params.canopy_extent.x-Lmax) + -0.5f*params.canopy_extent.x,0.5f*Lmax + (ry)*(params.canopy_extent.y-Lmax) + -0.5f*params.canopy_extent.y,0.5f*Lmax + rz*(params.canopy_height-Lmax) );
-
2196 }else{
-
2197 position = params.canopy_origin + make_vec3( (-0.5f+rx)*params.canopy_extent.x,(-0.5f+ry)*params.canopy_extent.y,(rz)*(params.canopy_height) );
-
2198 }
+
2192 //StrawberryParameters Canopy
+
2193 for (pugi::xml_node s = cgen.child("StrawberryParameters"); s; s = s.next_sibling("StrawberryParameters")) {
+
2194
+
2195 StrawberryParameters strawberryparameters(s);
+
2196 storeCanopyParameters<StrawberryParameters>(strawberryparameters);
+
2197 if (build)
+
2198 buildCanopy(strawberryparameters);
2199
-
2200 SphericalCoord rotation( 1.f, sampleLeafPDF(params.leaf_angle_distribution.c_str()), 2.f*float(M_PI)*rp );
+
2200 }
2201
-
2202 uint ID = context->copyObject(ID0);
-
2203 context->getObjectPointer(ID)->rotate(-rotation.elevation,"y");
-
2204 context->getObjectPointer(ID)->rotate(rotation.azimuth,"z");
-
2205 context->getObjectPointer(ID)->translate(position);
-
2206
-
2207 std::vector<uint> UUID = context->getObjectPointer(ID)->getPrimitiveUUIDs();
-
2208
-
2209 UUID_leaf.front().push_back(UUID);
-
2210
-
2211 }
-
2212
-
2213 context->deleteObject(ID0);
+
2202 //TomatoParameters Canopy
+
2203 for (pugi::xml_node s = cgen.child("TomatoParameters"); s; s = s.next_sibling("TomatoParameters")) {
+
2204
+
2205 TomatoParameters tomatoparameters(s);
+
2206 storeCanopyParameters<TomatoParameters>(tomatoparameters);
+
2207 if (build)
+
2208 buildCanopy(tomatoparameters);
+
2209
+
2210 }
+
2211
+
2212 //WalnutCanopyParameters Canopy
+
2213 for (pugi::xml_node s = cgen.child("WalnutCanopyParameters"); s; s = s.next_sibling("WalnutCanopyParameters")) {
2214
-
2215
-
2216 if( printmessages ){
-
2217 std::cout << "done." << std::endl;
-
2218 std::vector<uint> UUIDs_all = getAllUUIDs(0);
-
2219 std::cout << "Canopy consists of " << UUID_leaf.size()*UUID_leaf.front().size() << " leaves and " << UUIDs_all.size() << " total primitives." << std::endl;
-
2220 }
+
2215 WalnutCanopyParameters walnutcanopyparameters(s);
+
2216 storeCanopyParameters<WalnutCanopyParameters>(walnutcanopyparameters);
+
2217 if (build)
+
2218 buildCanopy(walnutcanopyparameters);
+
2219
+
2220 }
2221
-
2222}
-
-
2223
-
-
2224void CanopyGenerator::buildCanopy(const SphericalCrownsCanopyParameters &params ){
-
2225
-
2226 if( printmessages ){
-
2227 std::cout << "Building canopy of spherical crowns..." << std::flush;
-
2228 }
+
2222 //SorghumCanopyParameters Canopy
+
2223 for (pugi::xml_node s = cgen.child("SorghumCanopyParameters"); s; s = s.next_sibling("SorghumCanopyParameters")) {
+
2224
+
2225 SorghumCanopyParameters sorghumcanopyparameters(s);
+
2226 storeCanopyParameters<SorghumCanopyParameters>(sorghumcanopyparameters);
+
2227 if (build)
+
2228 buildCanopy(sorghumcanopyparameters);
2229
-
2230 std::uniform_real_distribution<float> unif_distribution;
+
2230 }
2231
-
2232 vec3 r = params.crown_radius;
-
2233
-
2234 float solidFractionx;
-
2235 if(params.leaf_texture_file.empty()){
-
2236 solidFractionx = 1.0;
-
2237 }else{
-
2238 helios::Texture texture(params.leaf_texture_file.c_str());
-
2239 solidFractionx = texture.getSolidFraction();
-
2240 }
+
2232 //BeanParameters Canopy
+
2233 for (pugi::xml_node s = cgen.child("BeanParameters"); s; s = s.next_sibling("BeanParameters")) {
+
2234
+
2235 BeanParameters beanparameters(s);
+
2236 storeCanopyParameters<BeanParameters>(beanparameters);
+
2237 if (build)
+
2238 buildCanopy(beanparameters);
+
2239
+
2240 }
2241
-
2242 float leafArea = params.leaf_size.x*params.leaf_size.y*solidFractionx;
-
2243 int Nleaves = (int)lroundf(4.f/3.f*float(M_PI)*r.x*r.y*r.z*params.leaf_area_density/leafArea);
+
2242 //Ground
+
2243 for (pugi::xml_node s = cgen.child("Ground"); s; s = s.next_sibling("Ground")) {
2244
-
2245 vec2 canopy_extent( params.plant_spacing.x*float(params.plant_count.x), params.plant_spacing.y*float(params.plant_count.y) );
-
2246
-
2247 std::string cconfig = params.canopy_configuration;
-
2248 if( cconfig !="uniform" && cconfig !="random" ){
-
2249 std::cout << "WARNING: Unknown canopy configuration parameter for spherical crowns canopy: " << cconfig << ". Using uniformly spaced configuration." << std::endl;
-
2250 cconfig = "uniform";
-
2251 }
+
2245 vec3 origin = XMLloadvec3(s, "origin");
+
2246 if (origin.x == nullvalue_f || origin.y == nullvalue_f || origin.z == nullvalue_f) {
+
2247 origin = make_vec3(0, 0, 0);
+
2248 if (printmessages) {
+
2249 std::cout << "WARNING: origin not provided for ground in file " << filename << std::endl;
+
2250 }
+
2251 }
2252
-
2253 UUID_leaf.resize(params.plant_count.x*params.plant_count.y);
-
2254
-
2255 uint ID0;
-
2256 if( params.leaf_texture_file.empty() ){
-
2257 ID0 = context->addTileObject( make_vec3(0,0,0), params.leaf_size, make_SphericalCoord(0,0), params.leaf_subdivisions, params.leaf_color );
-
2258 }else{
-
2259 ID0 = context->addTileObject( make_vec3(0,0,0), params.leaf_size, make_SphericalCoord(0,0), params.leaf_subdivisions, params.leaf_texture_file.c_str() );
-
2260 }
-
2261
-
2262 uint plant_ID = 0;
-
2263 uint prim_count = 0;
-
2264 for( int j=0; j<params.plant_count.y; j++ ){
-
2265 for( int i=0; i<params.plant_count.x; i++ ){
-
2266
-
2267 vec3 center;
-
2268 if( cconfig=="uniform" ){
-
2269 center = params.canopy_origin+make_vec3(-0.5f*canopy_extent.x+(float(i)+0.5f)*params.plant_spacing.x, -0.5f*canopy_extent.y+(float(j)+0.5f)*params.plant_spacing.y, r.z );
-
2270 }else if( cconfig=="random" ){
-
2271 float rx = unif_distribution(generator);
-
2272 float ry = unif_distribution(generator);
-
2273 center = params.canopy_origin+make_vec3(-0.5f*canopy_extent.x+float(i)*params.plant_spacing.x+r.x+(params.plant_spacing.x-2.f*r.x)*rx, -0.5f*canopy_extent.y+float(j)*params.plant_spacing.y+r.y+(params.plant_spacing.y-2.f*r.y)*ry, r.z );
-
2274 }
-
2275
-
2276 if( params.canopy_rotation!=0 ){
-
2277 center = rotatePointAboutLine( center, params.canopy_origin, make_vec3(0,0,1), params.canopy_rotation );
-
2278 }
-
2279
-
2280 for (int l=0; l<Nleaves; l++ ){
-
2281
-
2282 vec3 position(-9999,-9999,-9999);
+
2253 vec2 extent = XMLloadvec2(s, "extent");
+
2254 if (extent.x == nullvalue_f || extent.y == nullvalue_f) {
+
2255 extent = make_vec2(1, 1);
+
2256 if (printmessages) {
+
2257 std::cout << "WARNING: horizontal extent not provided for ground in file " << filename << std::endl;
+
2258 }
+
2259 }
+
2260
+
2261 int2 texture_subtiles = XMLloadint2(s, "texture_subtiles");
+
2262 if (texture_subtiles.x == nullvalue_i || texture_subtiles.y == nullvalue_i) {
+
2263 texture_subtiles = make_int2(1, 1);
+
2264 }
+
2265
+
2266 int2 texture_subpatches = XMLloadint2(s, "texture_subpatches");
+
2267 if (texture_subpatches.x == nullvalue_i || texture_subpatches.y == nullvalue_i) {
+
2268 texture_subpatches = make_int2(1, 1);
+
2269 }
+
2270
+
2271 std::string texturefile = XMLloadstring(s, "ground_texture_file");
+
2272 if ( texturefile == nullvalue_s ) {
+
2273 texturefile = "plugins/canopygenerator/textures/dirt.jpg";
+
2274 if (printmessages) {
+
2275 std::cout << "WARNING: texture map file not provided for ground in file " << filename << std::endl;
+
2276 }
+
2277 }
+
2278
+
2279 float rotation = XMLloadfloat(s, "rotation");
+
2280 if (rotation == nullvalue_f) {
+
2281 rotation = 0;
+
2282 }
2283
-
2284 while( pow(position.x,2)/pow(params.crown_radius.x,2)+pow(position.y,2)/pow(params.crown_radius.y,2)+pow(position.z,2)/pow(params.crown_radius.z,2) > 1.f ){
-
2285
-
2286 float u = unif_distribution(generator);
-
2287 float v = unif_distribution(generator);
-
2288 float w = unif_distribution(generator);
-
2289
-
2290 position = make_vec3( (-1+2.f*u)*r.x, (-1+2.f*v)*r.y, (-1+2.f*w)*r.z );
-
2291
-
2292 }
-
2293
-
2294 float theta = sampleLeafPDF(params.leaf_angle_distribution.c_str());
-
2295 float phi = 2.f*float(M_PI)*unif_distribution(generator);
-
2296
-
2297 uint ID = context->copyObject(ID0);
-
2298 context->getObjectPointer(ID)->rotate(-theta,"y");
-
2299 context->getObjectPointer(ID)->rotate(phi,"z");
-
2300 context->getObjectPointer(ID)->translate(center+position);
-
2301
-
2302 std::vector<uint> UUID = context->getObjectPointer(ID)->getPrimitiveUUIDs();
-
2303
-
2304 UUID_leaf.at(plant_ID).push_back(UUID);
-
2305
-
2306 }
-
2307
-
2308 std::vector<uint> UUIDs_all = getAllUUIDs(plant_ID);
-
2309 prim_count += UUIDs_all.size();
-
2310
-
2311 plant_ID++;
+
2284 if (build)
+
2285 buildGround(origin, extent, texture_subtiles, texture_subpatches, texturefile.c_str(), rotation);
+
2286
+
2287 }
+
2288
+
2289 }
+
2290
+
2291 std::cout << "done." << std::endl;
+
2292
+
2293}
+
+
2294
+
+
2295void CanopyGenerator::buildGround(const vec3 &ground_origin, const vec2 &ground_extent, const int2 &texture_subtiles, const int2 &texture_subpatches, const char* ground_texture_file ){
+
2296 buildGround( ground_origin, ground_extent, texture_subtiles, texture_subpatches, ground_texture_file, 0.f );
+
2297}
+
+
2298
+
+
2299void CanopyGenerator::buildGround(const vec3 &ground_origin, const vec2 &ground_extent, const int2 &texture_subtiles, const int2 &texture_subpatches, const char* ground_texture_file, float ground_rotation ){
+
2300
+
2301 if( printmessages ){
+
2302 std::cout << "Ground geometry..." << std::flush;
+
2303 }
+
2304
+
2305 vec2 dx_tile( ground_extent.x/float(texture_subtiles.x), ground_extent.y/float(texture_subtiles.y) );
+
2306
+
2307 vec2 dx_subpatch( dx_tile.x/float(texture_subpatches.x), dx_tile.y/float(texture_subpatches.y) );
+
2308
+
2309 std::vector<uint> UUIDs;
+
2310 for( int j=0; j<texture_subtiles.y; j++ ){
+
2311 for( int i=0; i<texture_subtiles.x; i++ ){
2312
-
2313 }
-
2314 }
-
2315
-
2316 context->deleteObject(ID0);
-
2317
-
2318 if( printmessages ){
-
2319 std::cout << "done." << std::endl;
-
2320 std::cout << "Canopy consists of " << UUID_leaf.size()*UUID_leaf.front().size() << " leaves and " << prim_count << " total primitives." << std::endl;
-
2321 }
+
2313 vec3 center = ground_origin + make_vec3( -0.5f*ground_extent.x+(float(i)+0.5f)*dx_tile.x, -0.5f*ground_extent.y+(float(j)+0.5f)*dx_tile.y, 0 );
+
2314
+
2315 if( ground_rotation!=0 ){
+
2316 center = rotatePointAboutLine( center, ground_origin, make_vec3(0,0,1), ground_rotation );
+
2317 }
+
2318
+
2319 UUIDs = context->addTile( center, dx_tile, make_SphericalCoord(0,-ground_rotation), texture_subpatches, ground_texture_file );
+
2320
+
2321 UUID_ground.insert( UUID_ground.begin(), UUIDs.begin(), UUIDs.end() );
2322
-
2323}
-
-
2324
-
-
2325void CanopyGenerator::buildCanopy(const ConicalCrownsCanopyParameters &params ){
-
2326
-
2327 if( printmessages ){
-
2328 std::cout << "Building canopy of conical crowns..." << std::flush;
+
2323 }
+
2324 }
+
2325
+
2326 if( printmessages ){
+
2327 std::cout << "done." << std::endl;
+
2328 std::cout << "Ground consists of " << UUID_ground.size() << " total primitives." << std::endl;
2329 }
2330
-
2331 std::uniform_real_distribution<float> unif_distribution;
+
2331}
+
2332
-
2333 float r = params.crown_radius;
-
2334 float h = params.crown_height;
-
2335
-
2336 float solidFractionx;
-
2337 if(params.leaf_texture_file.empty()){
-
2338 solidFractionx = 1.0;
-
2339 }else{
-
2340 helios::Texture texture(params.leaf_texture_file.c_str());
-
2341 solidFractionx = texture.getSolidFraction();
-
2342 }
-
2343
-
2344 float leafArea = params.leaf_size.x*params.leaf_size.y*solidFractionx;
-
2345 int Nleaves = (int)lroundf(1.f/3.f*float(M_PI)*r*r*h*params.leaf_area_density/leafArea);
+
+
2333void CanopyGenerator::buildCanopies(){
+
2334 for (const auto& canopy_parameters : canopy_parameters_list) {
+
2335 canopy_parameters->buildCanopy(*this);
+
2336 }
+
2337}
+
+
2338
+
+
2339void CanopyGenerator::buildCanopy(const HomogeneousCanopyParameters &params ){
+
2340
+
2341 if( printmessages ){
+
2342 std::cout << "Building homogeneous canopy..." << std::flush;
+
2343 }
+
2344
+
2345 std::uniform_real_distribution<float> unif_distribution;
2346
-
2347 vec2 canopy_extent( params.plant_spacing.x*float(params.plant_count.x), params.plant_spacing.y*float(params.plant_count.y) );
+
2347 UUID_leaf.resize(1);
2348
-
2349 std::string cconfig = params.canopy_configuration;
-
2350 if( cconfig !="uniform" && cconfig !="random" ){
-
2351 std::cout << "WARNING: Unknown canopy configuration parameter for conical crowns canopy: " << cconfig << ". Using uniformly spaced configuration." << std::endl;
-
2352 cconfig = "uniform";
-
2353 }
-
2354
-
2355 UUID_leaf.resize(params.plant_count.x*params.plant_count.y);
+
2349 float solidFractionx;
+
2350 if(params.leaf_texture_file.empty()){
+
2351 solidFractionx = 1.0;
+
2352 }else{
+
2353 helios::Texture texture(params.leaf_texture_file.c_str());
+
2354 solidFractionx = texture.getSolidFraction();
+
2355 }
2356
-
2357 uint ID0;
-
2358 if( params.leaf_texture_file.empty() ){
-
2359 ID0 = context->addTileObject( make_vec3(0,0,0), params.leaf_size, make_SphericalCoord(0,0), params.leaf_subdivisions, params.leaf_color );
-
2360 }else{
-
2361 ID0 = context->addTileObject( make_vec3(0,0,0), params.leaf_size, make_SphericalCoord(0,0), params.leaf_subdivisions, params.leaf_texture_file.c_str() );
-
2362 }
-
2363
-
2364 uint plant_ID = 0;
-
2365 uint prim_count = 0;
-
2366 for( int j=0; j<params.plant_count.y; j++ ){
-
2367 for( int i=0; i<params.plant_count.x; i++ ){
+
2357 float leafArea = params.leaf_size.x*params.leaf_size.y*solidFractionx;
+
2358 int Nleaves = (int)lroundf(params.leaf_area_index*params.canopy_extent.x*params.canopy_extent.y/leafArea);
+
2359
+
2360 float Lmax = sqrtf(params.leaf_size.x*params.leaf_size.x + params.leaf_size.y*params.leaf_size.y);
+
2361
+
2362 uint ID0;
+
2363 if( params.leaf_texture_file.empty() ){
+
2364 ID0 = context->addTileObject( make_vec3(0,0,0), params.leaf_size, make_SphericalCoord(0,0), params.leaf_subdivisions, params.leaf_color );
+
2365 }else{
+
2366 ID0 = context->addTileObject( make_vec3(0,0,0), params.leaf_size, make_SphericalCoord(0,0), params.leaf_subdivisions, params.leaf_texture_file.c_str() );
+
2367 }
2368
-
2369 vec3 center;
-
2370 if( cconfig=="uniform" ){
-
2371 center = params.canopy_origin+make_vec3(-0.5f*canopy_extent.x+(float(i)+0.5f)*params.plant_spacing.x, -0.5f*canopy_extent.y+(float(j)+0.5f)*params.plant_spacing.y, 0 );
-
2372 }else if( cconfig=="random" ){
-
2373 float rx = unif_distribution(generator);
-
2374 float ry = unif_distribution(generator);
-
2375 center = params.canopy_origin+make_vec3(-0.5f*canopy_extent.x+float(i)*params.plant_spacing.x+r+(params.plant_spacing.x-2.f*r)*rx, -0.5f*canopy_extent.y+float(j)*params.plant_spacing.y+r+(params.plant_spacing.y-2.f*r)*ry, 0 );
-
2376 }
-
2377
-
2378 if( params.canopy_rotation!=0 ){
-
2379 center = rotatePointAboutLine( center, params.canopy_origin, make_vec3(0,0,1), params.canopy_rotation );
-
2380 }
-
2381
-
2382 for (int l=0; l<Nleaves; l++ ){
-
2383
-
2384 vec3 position(-9999,-9999,-9999);
-
2385
-
2386 while( (powf(position.x,2) + powf(position.y,2) )/powf(r/h,2) > powf(h-position.z,2) ){
+
2369 for( int i=0; i<Nleaves; i++ ){
+
2370
+
2371 float rx = unif_distribution(generator);
+
2372 float ry = unif_distribution(generator);
+
2373 float rz = unif_distribution(generator);
+
2374
+
2375 float rp = unif_distribution(generator);
+
2376
+
2377 vec3 position;
+
2378
+
2379
+
2380 if(params.buffer == "z"){
+
2381 position = params.canopy_origin + make_vec3( (-0.5f+rx)*params.canopy_extent.x, (-0.5f+ry)*params.canopy_extent.y,0.5f*Lmax+rz*(params.canopy_height-Lmax) );
+
2382 }else if(params.buffer == "xyz"){
+
2383 position = params.canopy_origin + make_vec3( 0.5f*Lmax + (rx)*(params.canopy_extent.x-Lmax) + -0.5f*params.canopy_extent.x,0.5f*Lmax + (ry)*(params.canopy_extent.y-Lmax) + -0.5f*params.canopy_extent.y,0.5f*Lmax + rz*(params.canopy_height-Lmax) );
+
2384 }else{
+
2385 position = params.canopy_origin + make_vec3( (-0.5f+rx)*params.canopy_extent.x,(-0.5f+ry)*params.canopy_extent.y,(rz)*(params.canopy_height) );
+
2386 }
2387
-
2388 float u = unif_distribution(generator);
-
2389 float v = unif_distribution(generator);
-
2390 float w = unif_distribution(generator);
-
2391
-
2392 position = make_vec3( (-1+2.f*u)*r, (-1+2.f*v)*r, w*h );
-
2393
-
2394 }
-
2395
-
2396 float theta = sampleLeafPDF(params.leaf_angle_distribution.c_str());
-
2397 float phi = 2.f*float(M_PI)*unif_distribution(generator);
+
2388 SphericalCoord rotation( 1.f, sampleLeafPDF(params.leaf_angle_distribution.c_str()), 2.f*float(M_PI)*rp );
+
2389
+
2390 uint ID = context->copyObject(ID0);
+
2391 context->getObjectPointer(ID)->rotate(-rotation.elevation,"y");
+
2392 context->getObjectPointer(ID)->rotate(rotation.azimuth,"z");
+
2393 context->getObjectPointer(ID)->translate(position);
+
2394
+
2395 std::vector<uint> UUID = context->getObjectPointer(ID)->getPrimitiveUUIDs();
+
2396
+
2397 UUID_leaf.front().push_back(UUID);
2398
-
2399 uint ID = context->copyObject(ID0);
-
2400 context->getObjectPointer(ID)->rotate(-theta,"y");
-
2401 context->getObjectPointer(ID)->rotate(phi,"z");
-
2402 context->getObjectPointer(ID)->translate(center+position);
+
2399 }
+
2400
+
2401 context->deleteObject(ID0);
+
2402
2403
-
2404 std::vector<uint> UUID = context->getObjectPointer(ID)->getPrimitiveUUIDs();
-
2405
-
2406 UUID_leaf.at(plant_ID).push_back(UUID);
-
2407
-
2408 }
+
2404 if( printmessages ){
+
2405 std::cout << "done." << std::endl;
+
2406 std::vector<uint> UUIDs_all = getAllUUIDs(0);
+
2407 std::cout << "Canopy consists of " << UUID_leaf.size()*UUID_leaf.front().size() << " leaves and " << UUIDs_all.size() << " total primitives." << std::endl;
+
2408 }
2409
-
2410 std::vector<uint> UUIDs_all = getAllUUIDs(plant_ID);
-
2411 prim_count += UUIDs_all.size();
-
2412
-
2413 plant_ID++;
-
2414
-
2415 }
+
2410}
+
+
2411
+
+
2412void CanopyGenerator::buildCanopy(const SphericalCrownsCanopyParameters &params ){
+
2413
+
2414 if( printmessages ){
+
2415 std::cout << "Building canopy of spherical crowns..." << std::flush;
2416 }
2417
-
2418 context->deleteObject(ID0);
+
2418 std::uniform_real_distribution<float> unif_distribution;
2419
-
2420 if( printmessages ){
-
2421 std::cout << "done." << std::endl;
-
2422 std::cout << "Canopy consists of " << UUID_leaf.size()*UUID_leaf.front().size() << " leaves and " << prim_count << " total primitives." << std::endl;
-
2423 }
-
2424
-
2425}
-
-
2426
-
-
2427void CanopyGenerator::buildCanopy(const VSPGrapevineParameters &params ){
-
2428
-
2429 if( printmessages ){
-
2430 std::cout << "Building canopy of VSP grapevine..." << std::flush;
-
2431 }
+
2420 vec3 r = params.crown_radius;
+
2421
+
2422 float solidFractionx;
+
2423 if(params.leaf_texture_file.empty()){
+
2424 solidFractionx = 1.0;
+
2425 }else{
+
2426 helios::Texture texture(params.leaf_texture_file.c_str());
+
2427 solidFractionx = texture.getSolidFraction();
+
2428 }
+
2429
+
2430 float leafArea = params.leaf_size.x*params.leaf_size.y*solidFractionx;
+
2431 int Nleaves = (int)lroundf(4.f/3.f*float(M_PI)*r.x*r.y*r.z*params.leaf_area_density/leafArea);
2432
-
2433 if( params.cordon_height<params.trunk_height ){
-
2434 std::cout << "failed." << std::endl;
-
2435 throw(std::runtime_error("ERROR (CanopyGenerator::buildCanopy)): Cannot build VSP grapevine canopy. Cordon height cannot be less than the trunk height."));
-
2436 }
-
2437
-
2438 std::uniform_real_distribution<float> unif_distribution;
-
2439
-
2440 vec2 canopy_extent( params.plant_spacing*float(params.plant_count.x), params.row_spacing*float(params.plant_count.y) );
-
2441
-
2442 uint prim_count = 0;
-
2443 for( int j=0; j<params.plant_count.y; j++ ){
-
2444 for( int i=0; i<params.plant_count.x; i++ ){
-
2445
-
2446 vec3 center = params.canopy_origin+make_vec3(-0.5f*canopy_extent.x+(float(i)+0.5f)*params.plant_spacing, -0.5f*canopy_extent.y+(float(j)+0.5f)*params.row_spacing, 0 );
-
2447
-
2448 uint plant_ID = grapevineVSP( params, center );
+
2433 vec2 canopy_extent( params.plant_spacing.x*float(params.plant_count.x), params.plant_spacing.y*float(params.plant_count.y) );
+
2434
+
2435 std::string cconfig = params.canopy_configuration;
+
2436 if( cconfig !="uniform" && cconfig !="random" ){
+
2437 std::cout << "WARNING: Unknown canopy configuration parameter for spherical crowns canopy: " << cconfig << ". Using uniformly spaced configuration." << std::endl;
+
2438 cconfig = "uniform";
+
2439 }
+
2440
+
2441 UUID_leaf.resize(params.plant_count.x*params.plant_count.y);
+
2442
+
2443 uint ID0;
+
2444 if( params.leaf_texture_file.empty() ){
+
2445 ID0 = context->addTileObject( make_vec3(0,0,0), params.leaf_size, make_SphericalCoord(0,0), params.leaf_subdivisions, params.leaf_color );
+
2446 }else{
+
2447 ID0 = context->addTileObject( make_vec3(0,0,0), params.leaf_size, make_SphericalCoord(0,0), params.leaf_subdivisions, params.leaf_texture_file.c_str() );
+
2448 }
2449
-
2450 std::vector<uint> UUIDs_all = getAllUUIDs(plant_ID);
-
2451 prim_count += UUIDs_all.size();
-
2452
-
2453 }
-
2454 }
-
2455
-
2456
-
2457 if( printmessages ){
-
2458 std::cout << "done." << std::endl;
-
2459 std::cout << "Canopy consists of " << UUID_leaf.size()*UUID_leaf.front().size() << " leaves and " << prim_count << " total primitives." << std::endl;
-
2460 }
-
2461
-
2462}
-
+
2450 uint plant_ID = 0;
+
2451 uint prim_count = 0;
+
2452 for( int j=0; j<params.plant_count.y; j++ ){
+
2453 for( int i=0; i<params.plant_count.x; i++ ){
+
2454
+
2455 vec3 center;
+
2456 if( cconfig=="uniform" ){
+
2457 center = params.canopy_origin+make_vec3(-0.5f*canopy_extent.x+(float(i)+0.5f)*params.plant_spacing.x, -0.5f*canopy_extent.y+(float(j)+0.5f)*params.plant_spacing.y, r.z );
+
2458 }else if( cconfig=="random" ){
+
2459 float rx = unif_distribution(generator);
+
2460 float ry = unif_distribution(generator);
+
2461 center = params.canopy_origin+make_vec3(-0.5f*canopy_extent.x+float(i)*params.plant_spacing.x+r.x+(params.plant_spacing.x-2.f*r.x)*rx, -0.5f*canopy_extent.y+float(j)*params.plant_spacing.y+r.y+(params.plant_spacing.y-2.f*r.y)*ry, r.z );
+
2462 }
2463
-
-
2464void CanopyGenerator::buildCanopy(const SplitGrapevineParameters &params ){
-
2465
-
2466 if( printmessages ){
-
2467 std::cout << "Building canopy of split trellis grapevine..." << std::flush;
-
2468 }
+
2464 if( params.canopy_rotation!=0 ){
+
2465 center = rotatePointAboutLine( center, params.canopy_origin, make_vec3(0,0,1), params.canopy_rotation );
+
2466 }
+
2467
+
2468 for (int l=0; l<Nleaves; l++ ){
2469
-
2470 std::uniform_real_distribution<float> unif_distribution;
+
2470 vec3 position(-9999,-9999,-9999);
2471
-
2472 vec2 canopy_extent( params.plant_spacing*float(params.plant_count.x), params.row_spacing*float(params.plant_count.y) );
+
2472 while( pow(position.x,2)/pow(params.crown_radius.x,2)+pow(position.y,2)/pow(params.crown_radius.y,2)+pow(position.z,2)/pow(params.crown_radius.z,2) > 1.f ){
2473
-
2474 uint prim_count = 0;
-
2475 for( int j=0; j<params.plant_count.y; j++ ){
-
2476 for( int i=0; i<params.plant_count.x; i++ ){
+
2474 float u = unif_distribution(generator);
+
2475 float v = unif_distribution(generator);
+
2476 float w = unif_distribution(generator);
2477
-
2478 vec3 center = params.canopy_origin+make_vec3(-0.5f*canopy_extent.x+(float(i)+0.5f)*params.plant_spacing, -0.5f*canopy_extent.y+(float(j)+0.5f)*params.row_spacing, 0 );
+
2478 position = make_vec3( (-1+2.f*u)*r.x, (-1+2.f*v)*r.y, (-1+2.f*w)*r.z );
2479
-
2480 uint plant_ID = grapevineSplit( params, center );
+
2480 }
2481
-
2482 std::vector<uint> UUIDs_all = getAllUUIDs(plant_ID);
-
2483 prim_count += UUIDs_all.size();
+
2482 float theta = sampleLeafPDF(params.leaf_angle_distribution.c_str());
+
2483 float phi = 2.f*float(M_PI)*unif_distribution(generator);
2484
-
2485 }
-
2486 }
-
2487
-
2488
-
2489 if( printmessages ){
-
2490 std::cout << "done." << std::endl;
-
2491 std::cout << "Canopy consists of " << UUID_leaf.size()*UUID_leaf.front().size() << " leaves and " << prim_count << " total primitives." << std::endl;
-
2492 }
+
2485 uint ID = context->copyObject(ID0);
+
2486 context->getObjectPointer(ID)->rotate(-theta,"y");
+
2487 context->getObjectPointer(ID)->rotate(phi,"z");
+
2488 context->getObjectPointer(ID)->translate(center+position);
+
2489
+
2490 std::vector<uint> UUID = context->getObjectPointer(ID)->getPrimitiveUUIDs();
+
2491
+
2492 UUID_leaf.at(plant_ID).push_back(UUID);
2493
-
2494}
-
+
2494 }
2495
-
-
2496void CanopyGenerator::buildCanopy(const UnilateralGrapevineParameters &params ){
-
2497
-
2498 if( printmessages ){
-
2499 std::cout << "Building canopy of unilateral trellis grapevine..." << std::flush;
-
2500 }
-
2501
-
2502 std::uniform_real_distribution<float> unif_distribution;
+
2496 std::vector<uint> UUIDs_all = getAllUUIDs(plant_ID);
+
2497 prim_count += UUIDs_all.size();
+
2498
+
2499 plant_ID++;
+
2500
+
2501 }
+
2502 }
2503
-
2504 vec2 canopy_extent( params.plant_spacing*float(params.plant_count.x), params.row_spacing*float(params.plant_count.y) );
+
2504 context->deleteObject(ID0);
2505
-
2506 uint prim_count = 0;
-
2507 for( int j=0; j<params.plant_count.y; j++ ){
-
2508 for( int i=0; i<params.plant_count.x; i++ ){
-
2509
-
2510 vec3 center = params.canopy_origin+make_vec3(-0.5f*canopy_extent.x+(float(i)+0.5f)*params.plant_spacing, -0.5f*canopy_extent.y+(float(j)+0.5f)*params.row_spacing, 0 );
-
2511
-
2512 uint plant_ID = grapevineUnilateral( params, center );
-
2513
-
2514 std::vector<uint> UUIDs_all = getAllUUIDs(plant_ID);
-
2515 prim_count += UUIDs_all.size();
-
2516
-
2517 }
-
2518 }
-
2519
+
2506 if( printmessages ){
+
2507 std::cout << "done." << std::endl;
+
2508 std::cout << "Canopy consists of " << UUID_leaf.size()*UUID_leaf.front().size() << " leaves and " << prim_count << " total primitives." << std::endl;
+
2509 }
+
2510
+
2511}
+
+
2512
+
+
2513void CanopyGenerator::buildCanopy(const ConicalCrownsCanopyParameters &params ){
+
2514
+
2515 if( printmessages ){
+
2516 std::cout << "Building canopy of conical crowns..." << std::flush;
+
2517 }
+
2518
+
2519 std::uniform_real_distribution<float> unif_distribution;
2520
-
2521 if( printmessages ){
-
2522 std::cout << "done." << std::endl;
-
2523 std::cout << "Canopy consists of " << UUID_leaf.size()*UUID_leaf.front().size() << " leaves and " << prim_count << " total primitives." << std::endl;
-
2524 }
-
2525
-
2526}
-
-
2527
-
-
2528void CanopyGenerator::buildCanopy(const GobletGrapevineParameters &params ){
-
2529
-
2530 if( printmessages ){
-
2531 std::cout << "Building canopy of goblet trellis grapevine..." << std::flush;
-
2532 }
-
2533
-
2534 std::uniform_real_distribution<float> unif_distribution;
-
2535
-
2536 vec2 canopy_extent( params.plant_spacing*float(params.plant_count.x), params.row_spacing*float(params.plant_count.y) );
-
2537
-
2538 uint prim_count = 0;
-
2539 for( int j=0; j<params.plant_count.y; j++ ){
-
2540 for( int i=0; i<params.plant_count.x; i++ ){
-
2541
-
2542 vec3 center = params.canopy_origin+make_vec3(-0.5f*canopy_extent.x+(float(i)+0.5f)*params.plant_spacing, -0.5f*canopy_extent.y+(float(j)+0.5f)*params.row_spacing, 0 );
-
2543
-
2544 uint plant_ID = grapevineGoblet( params, center );
-
2545
-
2546 std::vector<uint> UUIDs_all = getAllUUIDs(plant_ID);
-
2547 prim_count += UUIDs_all.size();
-
2548
-
2549 }
+
2521 float r = params.crown_radius;
+
2522 float h = params.crown_height;
+
2523
+
2524 float solidFractionx;
+
2525 if(params.leaf_texture_file.empty()){
+
2526 solidFractionx = 1.0;
+
2527 }else{
+
2528 helios::Texture texture(params.leaf_texture_file.c_str());
+
2529 solidFractionx = texture.getSolidFraction();
+
2530 }
+
2531
+
2532 float leafArea = params.leaf_size.x*params.leaf_size.y*solidFractionx;
+
2533 int Nleaves = (int)lroundf(1.f/3.f*float(M_PI)*r*r*h*params.leaf_area_density/leafArea);
+
2534
+
2535 vec2 canopy_extent( params.plant_spacing.x*float(params.plant_count.x), params.plant_spacing.y*float(params.plant_count.y) );
+
2536
+
2537 std::string cconfig = params.canopy_configuration;
+
2538 if( cconfig !="uniform" && cconfig !="random" ){
+
2539 std::cout << "WARNING: Unknown canopy configuration parameter for conical crowns canopy: " << cconfig << ". Using uniformly spaced configuration." << std::endl;
+
2540 cconfig = "uniform";
+
2541 }
+
2542
+
2543 UUID_leaf.resize(params.plant_count.x*params.plant_count.y);
+
2544
+
2545 uint ID0;
+
2546 if( params.leaf_texture_file.empty() ){
+
2547 ID0 = context->addTileObject( make_vec3(0,0,0), params.leaf_size, make_SphericalCoord(0,0), params.leaf_subdivisions, params.leaf_color );
+
2548 }else{
+
2549 ID0 = context->addTileObject( make_vec3(0,0,0), params.leaf_size, make_SphericalCoord(0,0), params.leaf_subdivisions, params.leaf_texture_file.c_str() );
2550 }
2551
-
2552
-
2553 if( printmessages ){
-
2554 std::cout << "done." << std::endl;
-
2555 std::cout << "Canopy consists of " << UUID_leaf.size()*UUID_leaf.front().size() << " leaves and " << prim_count << " total primitives." << std::endl;
-
2556 }
-
2557
-
2558}
-
-
2559
-
-
2560void CanopyGenerator::buildCanopy(const WhiteSpruceCanopyParameters &params ){
-
2561
-
2562 if( printmessages ){
-
2563 std::cout << "Building canopy of white spruce trees..." << std::flush;
-
2564 }
+
2552 uint plant_ID = 0;
+
2553 uint prim_count = 0;
+
2554 for( int j=0; j<params.plant_count.y; j++ ){
+
2555 for( int i=0; i<params.plant_count.x; i++ ){
+
2556
+
2557 vec3 center;
+
2558 if( cconfig=="uniform" ){
+
2559 center = params.canopy_origin+make_vec3(-0.5f*canopy_extent.x+(float(i)+0.5f)*params.plant_spacing.x, -0.5f*canopy_extent.y+(float(j)+0.5f)*params.plant_spacing.y, 0 );
+
2560 }else if( cconfig=="random" ){
+
2561 float rx = unif_distribution(generator);
+
2562 float ry = unif_distribution(generator);
+
2563 center = params.canopy_origin+make_vec3(-0.5f*canopy_extent.x+float(i)*params.plant_spacing.x+r+(params.plant_spacing.x-2.f*r)*rx, -0.5f*canopy_extent.y+float(j)*params.plant_spacing.y+r+(params.plant_spacing.y-2.f*r)*ry, 0 );
+
2564 }
2565
-
2566 std::uniform_real_distribution<float> unif_distribution;
-
2567
-
2568 vec2 canopy_extent( params.plant_spacing.x*float(params.plant_count.x), params.plant_spacing.y*float(params.plant_count.y) );
+
2566 if( params.canopy_rotation!=0 ){
+
2567 center = rotatePointAboutLine( center, params.canopy_origin, make_vec3(0,0,1), params.canopy_rotation );
+
2568 }
2569
-
2570 std::string cconfig = params.canopy_configuration;
-
2571 if( cconfig !="uniform" && cconfig !="random" ){
-
2572 std::cout << "WARNING: Unknown canopy configuration parameter for white spruce canopy: " << cconfig << ". Using uniformly spaced configuration." << std::endl;
-
2573 cconfig = "uniform";
-
2574 }
+
2570 for (int l=0; l<Nleaves; l++ ){
+
2571
+
2572 vec3 position(-9999,-9999,-9999);
+
2573
+
2574 while( (powf(position.x,2) + powf(position.y,2) )/powf(r/h,2) > powf(h-position.z,2) ){
2575
-
2576 float r = params.crown_radius;
-
2577
-
2578 uint prim_count = 0;
-
2579 for( int j=0; j<params.plant_count.y; j++ ){
-
2580 for( int i=0; i<params.plant_count.x; i++ ){
+
2576 float u = unif_distribution(generator);
+
2577 float v = unif_distribution(generator);
+
2578 float w = unif_distribution(generator);
+
2579
+
2580 position = make_vec3( (-1+2.f*u)*r, (-1+2.f*v)*r, w*h );
2581
-
2582 vec3 center;
-
2583 if( cconfig !="uniform" ){
-
2584 center = params.canopy_origin+make_vec3(-0.5f*canopy_extent.x+(float(i)+0.5f)*params.plant_spacing.x, -0.5f*canopy_extent.y+(float(j)+0.5f)*params.plant_spacing.y, 0 );
-
2585 }else if( cconfig !="random" ){
-
2586 float rx = unif_distribution(generator);
-
2587 float ry = unif_distribution(generator);
-
2588 center = params.canopy_origin+make_vec3(-0.5f*canopy_extent.x+float(i)*params.plant_spacing.x+r+(params.plant_spacing.x-2.f*r)*rx, -0.5f*canopy_extent.y+float(j)*params.plant_spacing.y+r+(params.plant_spacing.y-2.f*r)*ry, 0 );
-
2589 }
-
2590
-
2591 if( params.canopy_rotation!=0 ){
-
2592 center = rotatePointAboutLine( center, params.canopy_origin, make_vec3(0,0,1), params.canopy_rotation );
-
2593 }
-
2594
-
2595 uint plant_ID = whitespruce( params, center );
-
2596
-
2597 std::vector<uint> UUIDs_all = getAllUUIDs(plant_ID);
-
2598 prim_count += UUIDs_all.size();
-
2599
-
2600 }
-
2601 }
+
2582 }
+
2583
+
2584 float theta = sampleLeafPDF(params.leaf_angle_distribution.c_str());
+
2585 float phi = 2.f*float(M_PI)*unif_distribution(generator);
+
2586
+
2587 uint ID = context->copyObject(ID0);
+
2588 context->getObjectPointer(ID)->rotate(-theta,"y");
+
2589 context->getObjectPointer(ID)->rotate(phi,"z");
+
2590 context->getObjectPointer(ID)->translate(center+position);
+
2591
+
2592 std::vector<uint> UUID = context->getObjectPointer(ID)->getPrimitiveUUIDs();
+
2593
+
2594 UUID_leaf.at(plant_ID).push_back(UUID);
+
2595
+
2596 }
+
2597
+
2598 std::vector<uint> UUIDs_all = getAllUUIDs(plant_ID);
+
2599 prim_count += UUIDs_all.size();
+
2600
+
2601 plant_ID++;
2602
-
2603 if( printmessages ){
-
2604 std::cout << "done." << std::endl;
-
2605 std::cout << "Canopy consists of " << UUID_leaf.size()*UUID_leaf.front().size() << " leaves and " << prim_count << " total primitives." << std::endl;
-
2606 }
+
2603 }
+
2604 }
+
2605
+
2606 context->deleteObject(ID0);
2607
-
2608}
-
-
2609
-
-
2610void CanopyGenerator::buildCanopy(const TomatoParameters &params ){
-
2611
-
2612 if( printmessages ){
-
2613 std::cout << "Building canopy of tomato plants..." << std::flush;
-
2614 }
-
2615
-
2616 std::uniform_real_distribution<float> unif_distribution;
-
2617
-
2618 vec2 canopy_extent( params.plant_spacing*float(params.plant_count.x), params.row_spacing*float(params.plant_count.y) );
-
2619
-
2620 uint prim_count = 0;
-
2621 for( int j=0; j<params.plant_count.y; j++ ){
-
2622 for( int i=0; i<params.plant_count.x; i++ ){
-
2623
-
2624 vec3 center = params.canopy_origin+make_vec3(-0.5f*canopy_extent.x+(float(i)+0.5f)*params.plant_spacing, -0.5f*canopy_extent.y+(float(j)+0.5f)*params.row_spacing, 0 );
+
2608 if( printmessages ){
+
2609 std::cout << "done." << std::endl;
+
2610 std::cout << "Canopy consists of " << UUID_leaf.size()*UUID_leaf.front().size() << " leaves and " << prim_count << " total primitives." << std::endl;
+
2611 }
+
2612
+
2613}
+
+
2614
+
+
2615void CanopyGenerator::buildCanopy(const VSPGrapevineParameters &params ){
+
2616
+
2617 if( printmessages ){
+
2618 std::cout << "Building canopy of VSP grapevine..." << std::flush;
+
2619 }
+
2620
+
2621 if( params.cordon_height<params.trunk_height ){
+
2622 std::cout << "failed." << std::endl;
+
2623 throw(std::runtime_error("ERROR (CanopyGenerator::buildCanopy)): Cannot build VSP grapevine canopy. Cordon height cannot be less than the trunk height."));
+
2624 }
2625
-
2626 uint plant_ID = tomato( params, center );
+
2626 std::uniform_real_distribution<float> unif_distribution;
2627
-
2628 std::vector<uint> UUIDs_all = getAllUUIDs(plant_ID);
-
2629 prim_count += UUIDs_all.size();
-
2630
-
2631 }
-
2632 }
+
2628 vec2 canopy_extent( params.plant_spacing*float(params.plant_count.x), params.row_spacing*float(params.plant_count.y) );
+
2629
+
2630 uint prim_count = 0;
+
2631 for( int j=0; j<params.plant_count.y; j++ ){
+
2632 for( int i=0; i<params.plant_count.x; i++ ){
2633
-
2634 if( printmessages ){
-
2635 std::cout << "done." << std::endl;
-
2636 //std::cout << "Canopy consists of " << UUID_leaf.size()*UUID_leaf.front().size() << " leaves and " << prim_count << " total primitives." << std::endl;
-
2637 }
-
2638
-
2639}
-
-
2640
-
-
2641void CanopyGenerator::buildCanopy(const StrawberryParameters &params ){
-
2642
-
2643 if( printmessages ){
-
2644 std::cout << "Building canopy of strawberry plants..." << std::flush;
-
2645 }
-
2646
-
2647 std::uniform_real_distribution<float> unif_distribution;
-
2648
-
2649 vec2 canopy_extent( params.plant_spacing*float(params.plant_count.x), params.row_spacing*float(params.plant_count.y) );
+
2634 if( params.missing_plant_probability > 0 ){
+
2635 float random_draw = context->randu();
+
2636 if( random_draw <= params.missing_plant_probability ){
+
2637 // Don't add the plant
+
2638 continue;
+
2639 }
+
2640 }
+
2641
+
2642 float plant_spacing = params.plant_spacing + getVariation(params.plant_spacing_spread, generator);
+
2643 float row_spacing = params.row_spacing + getVariation(params.row_spacing_spread, generator);
+
2644 vec3 center = params.canopy_origin+make_vec3(-0.5f*canopy_extent.x+(float(i)+0.5f)*plant_spacing, -0.5f*canopy_extent.y+(float(j)+0.5f)*row_spacing, 0 );
+
2645
+
2646 uint plant_ID = grapevineVSP( params, center );
+
2647
+
2648 std::vector<uint> UUIDs_all = getAllUUIDs(plant_ID);
+
2649 prim_count += UUIDs_all.size();
2650
-
2651 uint prim_count = 0;
-
2652 for( int j=0; j<params.plant_count.y; j++ ){
-
2653 for( int i=0; i<params.plant_count.x; i++ ){
+
2651 }
+
2652 }
+
2653
2654
-
2655 vec3 center = params.canopy_origin+make_vec3(-0.5f*canopy_extent.x+(float(i)+0.5f)*params.plant_spacing, -0.5f*canopy_extent.y+(float(j)+0.5f)*params.row_spacing, 0 );
-
2656
-
2657 uint plant_ID = strawberry( params, center );
-
2658
-
2659 std::vector<uint> UUIDs_all = getAllUUIDs(plant_ID);
-
2660 prim_count += UUIDs_all.size();
+
2655 if( printmessages ){
+
2656 std::cout << "done." << std::endl;
+
2657 std::cout << "Canopy consists of " << UUID_leaf.size()*UUID_leaf.front().size() << " leaves and " << prim_count << " total primitives." << std::endl;
+
2658 }
+
2659
+
2660}
+
2661
-
2662 }
-
2663 }
-
2664
-
2665 if( printmessages ){
-
2666 std::cout << "done." << std::endl;
-
2667 //std::cout << "Canopy consists of " << UUID_leaf.size()*UUID_leaf.front().size() << " leaves and " << prim_count << " total primitives." << std::endl;
-
2668 }
+
+
2662void CanopyGenerator::buildCanopy(const SplitGrapevineParameters &params ){
+
2663
+
2664 if( printmessages ){
+
2665 std::cout << "Building canopy of split trellis grapevine..." << std::flush;
+
2666 }
+
2667
+
2668 std::uniform_real_distribution<float> unif_distribution;
2669
-
2670}
-
+
2670 vec2 canopy_extent( params.plant_spacing*float(params.plant_count.x), params.row_spacing*float(params.plant_count.y) );
2671
-
-
2672void CanopyGenerator::buildCanopy(const WalnutCanopyParameters &params ){
-
2673
-
2674 if( printmessages ){
-
2675 std::cout << "Building canopy of walnut trees..." << std::flush;
-
2676 }
-
2677
-
2678 std::uniform_real_distribution<float> unif_distribution;
-
2679
-
2680 vec2 canopy_extent( params.plant_spacing*float(params.plant_count.x), params.row_spacing*float(params.plant_count.y) );
-
2681
-
2682 uint prim_count = 0;
-
2683 for( int j=0; j<params.plant_count.y; j++ ){
-
2684 for( int i=0; i<params.plant_count.x; i++ ){
-
2685
-
2686 vec3 center = params.canopy_origin+make_vec3(-0.5f*canopy_extent.x+(float(i)+0.5f)*params.plant_spacing, -0.5f*canopy_extent.y+(float(j)+0.5f)*params.row_spacing, 0 );
+
2672 uint prim_count = 0;
+
2673 for( int j=0; j<params.plant_count.y; j++ ){
+
2674 for( int i=0; i<params.plant_count.x; i++ ){
+
2675
+
2676 if( params.missing_plant_probability > 0 ){
+
2677 float random_draw = context->randu();
+
2678 if( random_draw <= params.missing_plant_probability ){
+
2679 // Don't add the plant
+
2680 continue;
+
2681 }
+
2682 }
+
2683
+
2684 float plant_spacing = params.plant_spacing + getVariation(params.plant_spacing_spread, generator);
+
2685 float row_spacing = params.row_spacing + getVariation(params.row_spacing_spread, generator);
+
2686 vec3 center = params.canopy_origin+make_vec3(-0.5f*canopy_extent.x+(float(i)+0.5f)*plant_spacing, -0.5f*canopy_extent.y+(float(j)+0.5f)*row_spacing, 0 );
2687
-
2688 uint plant_ID = walnut( params, center );
+
2688 uint plant_ID = grapevineSplit( params, center );
2689
2690 std::vector<uint> UUIDs_all = getAllUUIDs(plant_ID);
2691 prim_count += UUIDs_all.size();
@@ -2842,850 +2951,1098 @@
2693 }
2694 }
2695
-
2696 if( printmessages ){
-
2697 std::cout << "done." << std::endl;
-
2698 //std::cout << "Canopy consists of " << UUID_leaf.size()*UUID_leaf.front().size() << " leaves and " << prim_count << " total primitives." << std::endl;
-
2699 }
-
2700
-
2701}
-
-
2702
-
-
2703void CanopyGenerator::buildCanopy( const SorghumCanopyParameters &params ){
-
2704
-
2705 if( printmessages ){
-
2706 std::cout << "Building canopy of sorghum plants..." << std::flush;
-
2707 }
-
2708
-
2709 std::uniform_real_distribution<float> unif_distribution;
-
2710
-
2711 vec2 canopy_extent( params.plant_spacing*float(params.plant_count.x), params.row_spacing*float(params.plant_count.y) );
-
2712
-
2713 uint prim_count = 0;
-
2714 for( int j=0; j<params.plant_count.y; j++ ){
-
2715 for( int i=0; i<params.plant_count.x; i++ ){
-
2716
-
2717 vec3 center = params.canopy_origin+make_vec3(-0.5*canopy_extent.x+(i+0.5)*params.plant_spacing, -0.5*canopy_extent.y+(j+0.5)*params.row_spacing, 0 );
-
2718
-
2719 uint plant_ID = sorghum( params, center );
-
2720
-
2721 std::vector<uint> UUIDs_all = getAllUUIDs(plant_ID);
-
2722 prim_count += UUIDs_all.size();
-
2723
-
2724 }
-
2725 }
-
2726
-
2727 if( printmessages ){
-
2728 std::cout << "done." << std::endl;
-
2729 //std::cout << "Canopy consists of " << UUID_leaf.size()*UUID_leaf.front().size() << " leaves and " << prim_count << " total primitives." << std::endl;
-
2730 }
+
2696
+
2697 if( printmessages ){
+
2698 std::cout << "done." << std::endl;
+
2699 std::cout << "Canopy consists of " << UUID_leaf.size()*UUID_leaf.front().size() << " leaves and " << prim_count << " total primitives." << std::endl;
+
2700 }
+
2701
+
2702}
+
+
2703
+
+
2704void CanopyGenerator::buildCanopy(const UnilateralGrapevineParameters &params ){
+
2705
+
2706 if( printmessages ){
+
2707 std::cout << "Building canopy of unilateral trellis grapevine..." << std::flush;
+
2708 }
+
2709
+
2710 std::uniform_real_distribution<float> unif_distribution;
+
2711
+
2712 vec2 canopy_extent( params.plant_spacing*float(params.plant_count.x), params.row_spacing*float(params.plant_count.y) );
+
2713
+
2714 uint prim_count = 0;
+
2715 for( int j=0; j<params.plant_count.y; j++ ){
+
2716 for( int i=0; i<params.plant_count.x; i++ ){
+
2717
+
2718 if( params.missing_plant_probability > 0 ){
+
2719 float random_draw = context->randu();
+
2720 if( random_draw <= params.missing_plant_probability ){
+
2721 // Don't add the plant
+
2722 continue;
+
2723 }
+
2724 }
+
2725
+
2726 float plant_spacing = params.plant_spacing + getVariation(params.plant_spacing_spread, generator);
+
2727 float row_spacing = params.row_spacing + getVariation(params.row_spacing_spread, generator);
+
2728 vec3 center = params.canopy_origin+make_vec3(-0.5f*canopy_extent.x+(float(i)+0.5f)*plant_spacing, -0.5f*canopy_extent.y+(float(j)+0.5f)*row_spacing, 0 );
+
2729
+
2730 uint plant_ID = grapevineUnilateral( params, center );
2731
-
2732}
-
-
2733
-
-
2734void CanopyGenerator::buildCanopy(const BeanParameters &params ){
-
2735
-
2736 if( printmessages ){
-
2737 std::cout << "Building canopy of bean plants..." << std::flush;
-
2738 }
-
2739
-
2740 std::uniform_real_distribution<float> unif_distribution;
-
2741
-
2742 vec2 canopy_extent( params.plant_spacing*float(params.plant_count.x), params.row_spacing*float(params.plant_count.y) );
+
2732 std::vector<uint> UUIDs_all = getAllUUIDs(plant_ID);
+
2733 prim_count += UUIDs_all.size();
+
2734
+
2735 }
+
2736 }
+
2737
+
2738
+
2739 if( printmessages ){
+
2740 std::cout << "done." << std::endl;
+
2741 std::cout << "Canopy consists of " << UUID_leaf.size()*UUID_leaf.front().size() << " leaves and " << prim_count << " total primitives." << std::endl;
+
2742 }
2743
-
2744 uint plant_ID = 0;
-
2745 uint prim_count = 0;
-
2746 for( int j=0; j<params.plant_count.y; j++ ){
-
2747 for( int i=0; i<params.plant_count.x; i++ ){
-
2748
-
2749 if ( unif_distribution(generator) > params.germination_probability) {
-
2750 continue;
-
2751 }
-
2752
-
2753 vec3 center = params.canopy_origin+make_vec3(-0.5f*canopy_extent.x+(float(i)+0.5f)*params.plant_spacing, -0.5f*canopy_extent.y+(float(j)+0.5f)*params.row_spacing, 0 );
-
2754
-
2755 if( params.canopy_rotation!=0 ){
-
2756 center = rotatePointAboutLine( center, params.canopy_origin, make_vec3(0,0,1), params.canopy_rotation );
-
2757 }
-
2758
-
2759 bean( params, center );
-
2760
-
2761 std::vector<uint> UUIDs_all = getAllUUIDs(plant_ID);
-
2762 prim_count += UUIDs_all.size();
-
2763
-
2764 plant_ID++;
-
2765
-
2766 }
-
2767 }
-
2768
-
2769 if( printmessages ){
-
2770 std::cout << "done." << std::endl;
-
2771 }
-
2772
-
2773}
-
-
2774
-
-
2775float getVariation( float V, std::minstd_rand0& generator ){
+
2744}
+
+
2745
+
+
2746void CanopyGenerator::buildCanopy(const GobletGrapevineParameters &params ){
+
2747
+
2748 if( printmessages ){
+
2749 std::cout << "Building canopy of goblet trellis grapevine..." << std::flush;
+
2750 }
+
2751
+
2752 std::uniform_real_distribution<float> unif_distribution;
+
2753
+
2754 vec2 canopy_extent( params.plant_spacing*float(params.plant_count.x), params.row_spacing*float(params.plant_count.y) );
+
2755
+
2756 uint prim_count = 0;
+
2757 for( int j=0; j<params.plant_count.y; j++ ){
+
2758 for( int i=0; i<params.plant_count.x; i++ ){
+
2759
+
2760 if( params.missing_plant_probability > 0 ){
+
2761 float random_draw = context->randu();
+
2762 if( random_draw <= params.missing_plant_probability ){
+
2763 // Don't add the plant
+
2764 continue;
+
2765 }
+
2766 }
+
2767
+
2768 float plant_spacing = params.plant_spacing + getVariation(params.plant_spacing_spread, generator);
+
2769 float row_spacing = params.row_spacing + getVariation(params.row_spacing_spread, generator);
+
2770 vec3 center = params.canopy_origin+make_vec3(-0.5f*canopy_extent.x+(float(i)+0.5f)*plant_spacing, -0.5f*canopy_extent.y+(float(j)+0.5f)*row_spacing, 0 );
+
2771
+
2772 uint plant_ID = grapevineGoblet( params, center );
+
2773
+
2774 std::vector<uint> UUIDs_all = getAllUUIDs(plant_ID);
+
2775 prim_count += UUIDs_all.size();
2776
-
2777 std::uniform_real_distribution<float> unif_distribution;
-
2778
-
2779 return -V + 2.f*unif_distribution(generator)*V;
+
2777 }
+
2778 }
+
2779
2780
-
2781}
-
-
2782
-
2783float CanopyGenerator::sampleLeafAngle(const std::vector<float> &leafAngleDist ){
-
2784
-
2785 std::vector<float> gL = leafAngleDist;
-
2786
-
2787 float dTheta = 0.5f*float(M_PI)/float(gL.size());
-
2788
-
2789 //make sure PDF is properly normalized
-
2790 float norm = 0;
-
2791 for( float i : gL){
-
2792 norm += i*dTheta;
-
2793 }
-
2794 for( float & i : gL){
-
2795 i /= norm;
-
2796 }
-
2797 norm = 0;
-
2798 for( float i : gL){
-
2799 norm += i*dTheta;
-
2800 }
-
2801 assert( fabs(norm-1)<0.001 );
-
2802
-
2803 //calculate the leaf angle CDF
-
2804 std::vector<float> leafAngleCDF;
-
2805 leafAngleCDF.resize( gL.size() );
-
2806 float tsum = 0;
-
2807 for( int i=0; i<gL.size(); i++ ){
-
2808 tsum += gL.at(i)*dTheta;
-
2809 leafAngleCDF.at(i) = tsum;
-
2810 }
-
2811
-
2812 assert( fabs(tsum-1.f)<0.001 );
-
2813
-
2814 //draw from leaf angle PDF
-
2815 std::uniform_real_distribution<float> unif_distribution;
-
2816 float rt = unif_distribution(generator);
-
2817
-
2818 float theta = -1;
-
2819 for( int i=0; i<gL.size(); i++ ){
-
2820 if( rt<leafAngleCDF.at(i) ){
-
2821 theta = (float(i)+unif_distribution(generator))*dTheta;
-
2822 break;
-
2823 }
-
2824 }
-
2825
-
2826 assert( theta!=-1 );
+
2781 if( printmessages ){
+
2782 std::cout << "done." << std::endl;
+
2783 std::cout << "Canopy consists of " << UUID_leaf.size()*UUID_leaf.front().size() << " leaves and " << prim_count << " total primitives." << std::endl;
+
2784 }
+
2785
+
2786}
+
+
2787
+
+
2788void CanopyGenerator::buildCanopy(const WhiteSpruceCanopyParameters &params ){
+
2789
+
2790 if( printmessages ){
+
2791 std::cout << "Building canopy of white spruce trees..." << std::flush;
+
2792 }
+
2793
+
2794 std::uniform_real_distribution<float> unif_distribution;
+
2795
+
2796 vec2 canopy_extent( params.plant_spacing.x*float(params.plant_count.x), params.plant_spacing.y*float(params.plant_count.y) );
+
2797
+
2798 std::string cconfig = params.canopy_configuration;
+
2799 if( cconfig !="uniform" && cconfig !="random" ){
+
2800 std::cout << "WARNING: Unknown canopy configuration parameter for white spruce canopy: " << cconfig << ". Using uniformly spaced configuration." << std::endl;
+
2801 cconfig = "uniform";
+
2802 }
+
2803
+
2804 float r = params.crown_radius;
+
2805
+
2806 uint prim_count = 0;
+
2807 for( int j=0; j<params.plant_count.y; j++ ){
+
2808 for( int i=0; i<params.plant_count.x; i++ ){
+
2809
+
2810 vec3 center;
+
2811 if( cconfig !="uniform" ){
+
2812 center = params.canopy_origin+make_vec3(-0.5f*canopy_extent.x+(float(i)+0.5f)*params.plant_spacing.x, -0.5f*canopy_extent.y+(float(j)+0.5f)*params.plant_spacing.y, 0 );
+
2813 }else if( cconfig !="random" ){
+
2814 float rx = unif_distribution(generator);
+
2815 float ry = unif_distribution(generator);
+
2816 center = params.canopy_origin+make_vec3(-0.5f*canopy_extent.x+float(i)*params.plant_spacing.x+r+(params.plant_spacing.x-2.f*r)*rx, -0.5f*canopy_extent.y+float(j)*params.plant_spacing.y+r+(params.plant_spacing.y-2.f*r)*ry, 0 );
+
2817 }
+
2818
+
2819 if( params.canopy_rotation!=0 ){
+
2820 center = rotatePointAboutLine( center, params.canopy_origin, make_vec3(0,0,1), params.canopy_rotation );
+
2821 }
+
2822
+
2823 uint plant_ID = whitespruce( params, center );
+
2824
+
2825 std::vector<uint> UUIDs_all = getAllUUIDs(plant_ID);
+
2826 prim_count += UUIDs_all.size();
2827
-
2828 return theta;
-
2829
-
2830}
-
2831
-
2832void CanopyGenerator::cleanDeletedUUIDs( std::vector<uint> &UUIDs ){
-
2833 for( int p=UUIDs.size()-1; p>=0; p-- ){
-
2834 if( !context->doesPrimitiveExist(UUIDs.at(p)) ){
-
2835 std::swap( UUIDs.at(p), UUIDs.back() );
-
2836 UUIDs.pop_back();
-
2837 }
-
2838 }
-
2839}
-
2840
-
2841void CanopyGenerator::cleanDeletedUUIDs( std::vector<std::vector<uint> > &UUIDs ){
-
2842 for( auto & UUID : UUIDs){
-
2843 cleanDeletedUUIDs( UUID );
-
2844 }
-
2845}
-
2846
-
2847void CanopyGenerator::cleanDeletedUUIDs( std::vector<std::vector<std::vector<uint> > > &UUIDs ){
-
2848 for( auto & UUID : UUIDs){
-
2849 cleanDeletedUUIDs( UUID );
-
2850 }
-
2851}
-
2852
-
-
2853std::vector<uint> CanopyGenerator::getTrunkUUIDs(uint PlantID ){
-
2854 if( PlantID>=UUID_trunk.size() ){
-
2855 throw( std::runtime_error("ERROR (CanopyGenerator::getTrunkUUIDs): Cannot get UUIDs for plant " + std::to_string(PlantID) + " because only " + std::to_string(UUID_trunk.size()) + " plants have been built.") );
-
2856 }
-
2857
-
2858 cleanDeletedUUIDs(UUID_trunk.at(PlantID));
-
2859
-
2860 return UUID_trunk.at(PlantID);
+
2828 }
+
2829 }
+
2830
+
2831 if( printmessages ){
+
2832 std::cout << "done." << std::endl;
+
2833 std::cout << "Canopy consists of " << UUID_leaf.size()*UUID_leaf.front().size() << " leaves and " << prim_count << " total primitives." << std::endl;
+
2834 }
+
2835
+
2836}
+
+
2837
+
+
2838void CanopyGenerator::buildCanopy(const TomatoParameters &params ){
+
2839
+
2840 if( printmessages ){
+
2841 std::cout << "Building canopy of tomato plants..." << std::flush;
+
2842 }
+
2843
+
2844 std::uniform_real_distribution<float> unif_distribution;
+
2845
+
2846 vec2 canopy_extent( params.plant_spacing*float(params.plant_count.x), params.row_spacing*float(params.plant_count.y) );
+
2847
+
2848 uint prim_count = 0;
+
2849 for( int j=0; j<params.plant_count.y; j++ ){
+
2850 for( int i=0; i<params.plant_count.x; i++ ){
+
2851
+
2852 vec3 center = params.canopy_origin+make_vec3(-0.5f*canopy_extent.x+(float(i)+0.5f)*params.plant_spacing, -0.5f*canopy_extent.y+(float(j)+0.5f)*params.row_spacing, 0 );
+
2853
+
2854 uint plant_ID = tomato( params, center );
+
2855
+
2856 std::vector<uint> UUIDs_all = getAllUUIDs(plant_ID);
+
2857 prim_count += UUIDs_all.size();
+
2858
+
2859 }
+
2860 }
2861
-
2862}
-
-
2863
-
-
2864std::vector<uint> CanopyGenerator::getTrunkUUIDs(){
-
2865 std::vector<uint> UUID_flat = flatten( UUID_trunk );
-
2866 cleanDeletedUUIDs(UUID_flat);
-
2867 return UUID_flat;
-
2868}
-
-
2869
-
-
2870std::vector<uint> CanopyGenerator::getBranchUUIDs(uint PlantID ){
-
2871 if( PlantID>=UUID_branch.size() ){
-
2872 throw(std::runtime_error("ERROR (CanopyGenerator::getBranchUUIDs): Cannot get UUIDs for plant " + std::to_string(PlantID) + " because only " + std::to_string(UUID_branch.size()) + " plants have been built."));
+
2862 if( printmessages ){
+
2863 std::cout << "done." << std::endl;
+
2864 //std::cout << "Canopy consists of " << UUID_leaf.size()*UUID_leaf.front().size() << " leaves and " << prim_count << " total primitives." << std::endl;
+
2865 }
+
2866
+
2867}
+
+
2868
+
+
2869void CanopyGenerator::buildCanopy(const StrawberryParameters &params ){
+
2870
+
2871 if( printmessages ){
+
2872 std::cout << "Building canopy of strawberry plants..." << std::flush;
2873 }
2874
-
2875 cleanDeletedUUIDs(UUID_branch.at(PlantID));
+
2875 std::uniform_real_distribution<float> unif_distribution;
2876
-
2877 return UUID_branch.at(PlantID);
+
2877 vec2 canopy_extent( params.plant_spacing*float(params.plant_count.x), params.row_spacing*float(params.plant_count.y) );
2878
-
2879}
-
-
2880
-
-
2881std::vector<uint> CanopyGenerator::getBranchUUIDs(){
-
2882 std::vector<uint> UUID_flat = flatten( UUID_branch );
-
2883 cleanDeletedUUIDs(UUID_flat);
-
2884 return UUID_flat;
-
2885}
-
+
2879 uint prim_count = 0;
+
2880 for( int j=0; j<params.plant_count.y; j++ ){
+
2881 for( int i=0; i<params.plant_count.x; i++ ){
+
2882
+
2883 vec3 center = params.canopy_origin+make_vec3(-0.5f*canopy_extent.x+(float(i)+0.5f)*params.plant_spacing, -0.5f*canopy_extent.y+(float(j)+0.5f)*params.row_spacing, 0 );
+
2884
+
2885 uint plant_ID = strawberry( params, center );
2886
-
-
2887std::vector<std::vector<uint> > CanopyGenerator::getLeafUUIDs(uint PlantID ){
-
2888 if( PlantID>=UUID_leaf.size() ){
-
2889 throw(std::runtime_error("ERROR (CanopyGenerator::getLeafUUIDs): Cannot get UUIDs for plant " + std::to_string(PlantID) + " because only " + std::to_string(UUID_leaf.size()) + " plants have been built."));
-
2890 }
-
2891
-
2892 cleanDeletedUUIDs(UUID_leaf.at(PlantID));
-
2893
-
2894 return UUID_leaf.at(PlantID);
-
2895}
-
-
2896
-
-
2897std::vector<uint> CanopyGenerator::getLeafUUIDs(){
-
2898 std::vector<uint> UUID_flat = flatten( UUID_leaf );
-
2899 cleanDeletedUUIDs(UUID_flat);
-
2900 return UUID_flat;
-
2901}
-
-
2902
-
-
2903std::vector<std::vector<std::vector<uint> > > CanopyGenerator::getFruitUUIDs(uint PlantID ){
-
2904 if( PlantID>=UUID_fruit.size() ){
-
2905 throw(std::runtime_error("ERROR (CanopyGenerator::getFruitUUIDs): Cannot get UUIDs for plant " + std::to_string(PlantID) + " because only " + std::to_string(UUID_fruit.size()) + " plants have been built."));
-
2906 }
+
2887 std::vector<uint> UUIDs_all = getAllUUIDs(plant_ID);
+
2888 prim_count += UUIDs_all.size();
+
2889
+
2890 }
+
2891 }
+
2892
+
2893 if( printmessages ){
+
2894 std::cout << "done." << std::endl;
+
2895 //std::cout << "Canopy consists of " << UUID_leaf.size()*UUID_leaf.front().size() << " leaves and " << prim_count << " total primitives." << std::endl;
+
2896 }
+
2897
+
2898}
+
+
2899
+
+
2900void CanopyGenerator::buildCanopy(const WalnutCanopyParameters &params ){
+
2901
+
2902 if( printmessages ){
+
2903 std::cout << "Building canopy of walnut trees..." << std::flush;
+
2904 }
+
2905
+
2906 std::uniform_real_distribution<float> unif_distribution;
2907
-
2908 cleanDeletedUUIDs(UUID_fruit.at(PlantID));
+
2908 vec2 canopy_extent( params.plant_spacing*float(params.plant_count.x), params.row_spacing*float(params.plant_count.y) );
2909
-
2910 return UUID_fruit.at(PlantID);
-
2911
-
2912}
-
+
2910 uint prim_count = 0;
+
2911 for( int j=0; j<params.plant_count.y; j++ ){
+
2912 for( int i=0; i<params.plant_count.x; i++ ){
2913
-
-
2914std::vector<uint> CanopyGenerator::getFruitUUIDs(){
+
2914 vec3 center = params.canopy_origin+make_vec3(-0.5f*canopy_extent.x+(float(i)+0.5f)*params.plant_spacing, -0.5f*canopy_extent.y+(float(j)+0.5f)*params.row_spacing, 0 );
2915
-
2916 std::vector<uint> UUIDs_flat, U;
+
2916 uint plant_ID = walnut( params, center );
2917
-
2918 for( auto & p : UUID_fruit){
-
2919 U = flatten( p );
-
2920 UUIDs_flat.insert( UUIDs_flat.end(), U.begin(), U.end() );
-
2921 }
-
2922
-
2923 cleanDeletedUUIDs(UUIDs_flat);
-
2924 return UUIDs_flat;
-
2925}
-
-
2926
-
-
2927std::vector<uint> CanopyGenerator::getGroundUUIDs(){
+
2918 std::vector<uint> UUIDs_all = getAllUUIDs(plant_ID);
+
2919 prim_count += UUIDs_all.size();
+
2920
+
2921 }
+
2922 }
+
2923
+
2924 if( printmessages ){
+
2925 std::cout << "done." << std::endl;
+
2926 //std::cout << "Canopy consists of " << UUID_leaf.size()*UUID_leaf.front().size() << " leaves and " << prim_count << " total primitives." << std::endl;
+
2927 }
2928
-
2929 std::vector<uint> UUID;
+
2929}
+
2930
-
2931 for( uint i : UUID_ground){
+
+
2931void CanopyGenerator::buildCanopy( const SorghumCanopyParameters &params ){
2932
-
2933 if( context->doesPrimitiveExist(i) ){
-
2934 UUID.push_back(i);
-
2935 }
+
2933 if( printmessages ){
+
2934 std::cout << "Building canopy of sorghum plants..." << std::flush;
+
2935 }
2936
-
2937 }
+
2937 std::uniform_real_distribution<float> unif_distribution;
2938
-
2939 return UUID;
+
2939 vec2 canopy_extent( params.plant_spacing*float(params.plant_count.x), params.row_spacing*float(params.plant_count.y) );
2940
-
2941}
-
-
2942
-
-
2943std::vector<uint> CanopyGenerator::getAllUUIDs(uint PlantID ){
-
2944 std::vector<uint> UUIDs;
-
2945 if( UUID_trunk.size()>PlantID ){
-
2946 UUIDs.insert(UUIDs.end(),UUID_trunk.at(PlantID).begin(),UUID_trunk.at(PlantID).end());
-
2947 }
-
2948 if( UUID_branch.size()>PlantID ){
-
2949 UUIDs.insert(UUIDs.end(),UUID_branch.at(PlantID).begin(),UUID_branch.at(PlantID).end());
-
2950 }
-
2951 if( UUID_leaf.size()>PlantID ){
-
2952 for( auto & i : UUID_leaf.at(PlantID)){
-
2953 UUIDs.insert(UUIDs.end(),i.begin(),i.end());
-
2954 }
-
2955 }
-
2956 if( UUID_fruit.size()>PlantID ){
-
2957 for( auto & j : UUID_fruit.at(PlantID)){
-
2958 for( auto & i : j ){
-
2959 UUIDs.insert(UUIDs.end(),i.begin(),i.end());
-
2960 }
-
2961 }
-
2962 }
-
2963
-
2964 cleanDeletedUUIDs(UUIDs);
-
2965
-
2966 return UUIDs;
-
2967}
-
-
2968
-
-
2969uint CanopyGenerator::getPlantCount(){
-
2970 return UUID_leaf.size();
-
2971}
-
-
2972
-
-
2973void CanopyGenerator::seedRandomGenerator(uint seed ){
-
2974 generator.seed(seed);
-
2975}
+
2941 uint prim_count = 0;
+
2942 for( int j=0; j<params.plant_count.y; j++ ){
+
2943 for( int i=0; i<params.plant_count.x; i++ ){
+
2944
+
2945 vec3 center = params.canopy_origin+make_vec3(-0.5*canopy_extent.x+(i+0.5)*params.plant_spacing, -0.5*canopy_extent.y+(j+0.5)*params.row_spacing, 0 );
+
2946
+
2947 uint plant_ID = sorghum( params, center );
+
2948
+
2949 std::vector<uint> UUIDs_all = getAllUUIDs(plant_ID);
+
2950 prim_count += UUIDs_all.size();
+
2951
+
2952 }
+
2953 }
+
2954
+
2955 if( printmessages ){
+
2956 std::cout << "done." << std::endl;
+
2957 //std::cout << "Canopy consists of " << UUID_leaf.size()*UUID_leaf.front().size() << " leaves and " << prim_count << " total primitives." << std::endl;
+
2958 }
+
2959
+
2960}
+
2961
+
+
2962void CanopyGenerator::buildCanopy(const BeanParameters &params ){
+
2963
+
2964 if( printmessages ){
+
2965 std::cout << "Building canopy of bean plants..." << std::flush;
+
2966 }
+
2967
+
2968 std::uniform_real_distribution<float> unif_distribution;
+
2969
+
2970 vec2 canopy_extent( params.plant_spacing*float(params.plant_count.x), params.row_spacing*float(params.plant_count.y) );
+
2971
+
2972 uint plant_ID = 0;
+
2973 uint prim_count = 0;
+
2974 for( int j=0; j<params.plant_count.y; j++ ){
+
2975 for( int i=0; i<params.plant_count.x; i++ ){
2976
-
-
2977void CanopyGenerator::disableMessages(){
-
2978 printmessages=false;
-
2979}
-
+
2977 if ( unif_distribution(generator) > params.germination_probability) {
+
2978 continue;
+
2979 }
2980
-
-
2981void CanopyGenerator::enableMessages(){
-
2982 printmessages=true;
-
2983}
-
-
2984
-
-
2985helios::vec3 interpolateTube(const std::vector<vec3> &P, float frac ){
+
2981 vec3 center = params.canopy_origin+make_vec3(-0.5f*canopy_extent.x+(float(i)+0.5f)*params.plant_spacing, -0.5f*canopy_extent.y+(float(j)+0.5f)*params.row_spacing, 0 );
+
2982
+
2983 if( params.canopy_rotation!=0 ){
+
2984 center = rotatePointAboutLine( center, params.canopy_origin, make_vec3(0,0,1), params.canopy_rotation );
+
2985 }
2986
-
2987 assert( frac>=0 && frac<=1 );
-
2988 assert( !P.empty() );
-
2989
-
2990 float dl=0.f;
-
2991 for( int i=0; i<P.size()-1; i++ ){
-
2992 dl+=(P.at(i+1)-P.at(i)).magnitude();
-
2993 }
-
2994
-
2995 float f = 0;
-
2996 for( int i=0; i<P.size()-1; i++ ){
-
2997
-
2998 float dseg = (P.at(i+1)-P.at(i)).magnitude();
-
2999
-
3000 float fplus = f+dseg/dl;
-
3001
-
3002 if( fplus>=1.f ){
-
3003 fplus = 1.f+1e-3;
-
3004 }
-
3005
-
3006 if( frac>=f && (frac<=fplus || fabs(frac-fplus)<0.0001 ) ){
-
3007
-
3008 vec3 V = P.at(i) + (frac-f)/(fplus-f)*(P.at(i+1)-P.at(i));
-
3009
-
3010 return V;
-
3011 }
+
2987 bean( params, center );
+
2988
+
2989 std::vector<uint> UUIDs_all = getAllUUIDs(plant_ID);
+
2990 prim_count += UUIDs_all.size();
+
2991
+
2992 plant_ID++;
+
2993
+
2994 }
+
2995 }
+
2996
+
2997 if( printmessages ){
+
2998 std::cout << "done." << std::endl;
+
2999 }
+
3000
+
3001}
+
+
3002
+
+
3003float getVariation( float V, std::minstd_rand0& generator ){
+
3004
+
3005 std::uniform_real_distribution<float> unif_distribution;
+
3006
+
3007 return -V + 2.f*unif_distribution(generator)*V;
+
3008
+
3009}
+
+
3010
+
3011float CanopyGenerator::sampleLeafAngle(const std::vector<float> &leafAngleDist ){
3012
-
3013 f=fplus;
-
3014 }
-
3015
-
3016 return P.front();
-
3017
-
3018}
-
-
3019
-
-
3020float interpolateTube(const std::vector<float> &P, float frac ){
-
3021
-
3022 assert( frac>=0 && frac<=1 );
-
3023 assert( !P.empty() );
-
3024
-
3025 float dl=0.f;
-
3026 for( int i=0; i<P.size()-1; i++ ){
-
3027 dl+=(P.at(i+1)-P.at(i));
+
3013 std::vector<float> gL = leafAngleDist;
+
3014
+
3015 float dTheta = 0.5f*float(M_PI)/float(gL.size());
+
3016
+
3017 //make sure PDF is properly normalized
+
3018 float norm = 0;
+
3019 for( float i : gL){
+
3020 norm += i*dTheta;
+
3021 }
+
3022 for( float & i : gL){
+
3023 i /= norm;
+
3024 }
+
3025 norm = 0;
+
3026 for( float i : gL){
+
3027 norm += i*dTheta;
3028 }
-
3029
-
3030 float f = 0;
-
3031 for( int i=0; i<P.size()-1; i++ ){
-
3032
-
3033 float dseg = (P.at(i+1)-P.at(i));
-
3034
-
3035 float fplus = f+dseg/dl;
-
3036
-
3037 if( fplus>=1.f ){
-
3038 fplus = 1.f+1e-3;
-
3039 }
-
3040
-
3041 if( frac>=f && (frac<=fplus || fabs(frac-fplus)<0.0001 ) ){
-
3042
-
3043 float V = P.at(i) + (frac-f)/(fplus-f)*(P.at(i+1)-P.at(i));
-
3044
-
3045 return V;
-
3046 }
-
3047
-
3048 f=fplus;
-
3049 }
-
3050
-
3051 return P.front();
-
3052
-
3053}
-
-
3054
-
-
3055float evaluateCDFresid(float thetaL, std::vector<float> &ru_v, const void *a_distribution) {
-
3056
-
3057 assert(!ru_v.empty());
-
3058 assert( ru_v.front()>=0.f && ru_v.front()<=1.f );
+
3029 assert( fabs(norm-1)<0.001 );
+
3030
+
3031 //calculate the leaf angle CDF
+
3032 std::vector<float> leafAngleCDF;
+
3033 leafAngleCDF.resize( gL.size() );
+
3034 float tsum = 0;
+
3035 for( int i=0; i<gL.size(); i++ ){
+
3036 tsum += gL.at(i)*dTheta;
+
3037 leafAngleCDF.at(i) = tsum;
+
3038 }
+
3039
+
3040 assert( fabs(tsum-1.f)<0.001 );
+
3041
+
3042 //draw from leaf angle PDF
+
3043 std::uniform_real_distribution<float> unif_distribution;
+
3044 float rt = unif_distribution(generator);
+
3045
+
3046 float theta = -1;
+
3047 for( int i=0; i<gL.size(); i++ ){
+
3048 if( rt<leafAngleCDF.at(i) ){
+
3049 theta = (float(i)+unif_distribution(generator))*dTheta;
+
3050 break;
+
3051 }
+
3052 }
+
3053
+
3054 assert( theta!=-1 );
+
3055
+
3056 return theta;
+
3057
+
3058}
3059
-
3060 float ru = ru_v.front();
-
3061
-
3062 const char* distribution = reinterpret_cast<const char*>(a_distribution);
-
3063
-
3064 float CDFresid = INFINITY;
-
3065 if( strcmp(distribution,"planophile")==0 ){
-
3066 CDFresid = ru - 2.f/float(M_PI)*(thetaL+0.5f*sinf(2.f*thetaL));
-
3067 }else if( strcmp(distribution,"erectophile")==0 ){
-
3068 CDFresid = ru - 2.f/float(M_PI)*(thetaL-0.5f*sinf(2.f*thetaL));
-
3069 }else if( strcmp(distribution,"plagiophile")==0 ){
-
3070 CDFresid = ru - 2.f/float(M_PI)*(thetaL-0.25f*sinf(4.f*thetaL));
-
3071 }else if( strcmp(distribution,"extremophile")==0 ){
-
3072 CDFresid = ru - 2.f/float(M_PI)*(thetaL+0.25f*sinf(4.f*thetaL));
-
3073 }
+
3060void CanopyGenerator::cleanDeletedUUIDs( std::vector<uint> &UUIDs ){
+
3061 for( int p=UUIDs.size()-1; p>=0; p-- ){
+
3062 if( !context->doesPrimitiveExist(UUIDs.at(p)) ){
+
3063 std::swap( UUIDs.at(p), UUIDs.back() );
+
3064 UUIDs.pop_back();
+
3065 }
+
3066 }
+
3067}
+
3068
+
3069void CanopyGenerator::cleanDeletedUUIDs( std::vector<std::vector<uint> > &UUIDs ){
+
3070 for( auto & UUID : UUIDs){
+
3071 cleanDeletedUUIDs( UUID );
+
3072 }
+
3073}
3074
-
3075 return CDFresid;
-
3076
-
3077}
-
-
3078
-
3079float CanopyGenerator::sampleLeafPDF( const char* distribution ){
+
3075void CanopyGenerator::cleanDeletedUUIDs( std::vector<std::vector<std::vector<uint> > > &UUIDs ){
+
3076 for( auto & UUID : UUIDs){
+
3077 cleanDeletedUUIDs( UUID );
+
3078 }
+
3079}
3080
-
3081 float thetaL;
-
3082
-
3083 std::uniform_real_distribution<float> unif_distribution;
-
3084
-
3085 float ru = unif_distribution(generator);
-
3086
-
3087 if( strcmp(distribution,"spherical")==0 ){
-
3088 thetaL = acos_safe(1.f-ru);
-
3089 }else if( strcmp(distribution,"uniform")==0 ){
-
3090 thetaL = ru*0.5f*float(M_PI);
-
3091 }else if( strcmp(distribution,"planophile")==0 || strcmp(distribution,"erectophile")==0 || strcmp(distribution,"plagiophile")==0 || strcmp(distribution,"extremophile")==0 ){
-
3092
-
3093 std::vector<float> args{ru};
-
3094
-
3095 thetaL = fzero( evaluateCDFresid, args, distribution, 0.25f );
-
3096
-
3097 }else{
-
3098 throw(std::runtime_error("ERROR (sampleLeafPDF): Invalid leaf angle distribution of " + std::string(distribution) + " specified."));
-
3099 }
-
3100
-
3101 return thetaL;
+
+
3081std::vector<uint> CanopyGenerator::getTrunkUUIDs(uint PlantID ){
+
3082 if( PlantID>=UUID_trunk.size() ){
+
3083 throw( std::runtime_error("ERROR (CanopyGenerator::getTrunkUUIDs): Cannot get UUIDs for plant " + std::to_string(PlantID) + " because only " + std::to_string(UUID_trunk.size()) + " plants have been built.") );
+
3084 }
+
3085
+
3086 cleanDeletedUUIDs(UUID_trunk.at(PlantID));
+
3087
+
3088 return UUID_trunk.at(PlantID);
+
3089
+
3090}
+
+
3091
+
+
3092std::vector<uint> CanopyGenerator::getTrunkUUIDs(){
+
3093 std::vector<uint> UUID_flat = flatten( UUID_trunk );
+
3094 cleanDeletedUUIDs(UUID_flat);
+
3095 return UUID_flat;
+
3096}
+
+
3097
+
+
3098std::vector<uint> CanopyGenerator::getBranchUUIDs(uint PlantID ){
+
3099 if( PlantID>=UUID_branch.size() ){
+
3100 throw(std::runtime_error("ERROR (CanopyGenerator::getBranchUUIDs): Cannot get UUIDs for plant " + std::to_string(PlantID) + " because only " + std::to_string(UUID_branch.size()) + " plants have been built."));
+
3101 }
3102
-
3103}
+
3103 cleanDeletedUUIDs(UUID_branch.at(PlantID));
3104
-
-
3105void CanopyGenerator::createElementLabels() {
-
3106 enable_element_labels = true;
+
3105 return UUID_branch.at(PlantID);
+
3106
3107}
3108
-
3109void CanopyGenerator::disableElementLabels() {
-
3110 enable_element_labels = false;
-
3111}
+
3109std::vector<uint> CanopyGenerator::getBranchUUIDs(){
+
3110 std::vector<uint> UUID_flat = flatten( UUID_branch );
+
3111 cleanDeletedUUIDs(UUID_flat);
+
3112 return UUID_flat;
+
3113}
+
+
3114
+
+
3115std::vector<std::vector<uint> > CanopyGenerator::getLeafUUIDs(uint PlantID ){
+
3116 if( PlantID>=UUID_leaf.size() ){
+
3117 throw(std::runtime_error("ERROR (CanopyGenerator::getLeafUUIDs): Cannot get UUIDs for plant " + std::to_string(PlantID) + " because only " + std::to_string(UUID_leaf.size()) + " plants have been built."));
+
3118 }
+
3119
+
3120 cleanDeletedUUIDs(UUID_leaf.at(PlantID));
+
3121
+
3122 return UUID_leaf.at(PlantID);
+
3123}
+
+
3124
+
+
3125std::vector<uint> CanopyGenerator::getLeafUUIDs(){
+
3126 std::vector<uint> UUID_flat = flatten( UUID_leaf );
+
3127 cleanDeletedUUIDs(UUID_flat);
+
3128 return UUID_flat;
+
3129}
+
+
3130
+
+
3131std::vector<std::vector<std::vector<uint> > > CanopyGenerator::getFruitUUIDs(uint PlantID ){
+
3132 if( PlantID>=UUID_fruit.size() ){
+
3133 throw(std::runtime_error("ERROR (CanopyGenerator::getFruitUUIDs): Cannot get UUIDs for plant " + std::to_string(PlantID) + " because only " + std::to_string(UUID_fruit.size()) + " plants have been built."));
+
3134 }
+
3135
+
3136 cleanDeletedUUIDs(UUID_fruit.at(PlantID));
+
3137
+
3138 return UUID_fruit.at(PlantID);
+
3139
+
3140}
+
+
3141
+
+
3142std::vector<uint> CanopyGenerator::getFruitUUIDs(){
+
3143
+
3144 std::vector<uint> UUIDs_flat, U;
+
3145
+
3146 for( auto & p : UUID_fruit){
+
3147 U = flatten( p );
+
3148 UUIDs_flat.insert( UUIDs_flat.end(), U.begin(), U.end() );
+
3149 }
+
3150
+
3151 cleanDeletedUUIDs(UUIDs_flat);
+
3152 return UUIDs_flat;
+
3153}
+
+
3154
+
+
3155std::vector<uint> CanopyGenerator::getGroundUUIDs(){
+
3156
+
3157 std::vector<uint> UUID;
+
3158
+
3159 for( uint i : UUID_ground){
+
3160
+
3161 if( context->doesPrimitiveExist(i) ){
+
3162 UUID.push_back(i);
+
3163 }
+
3164
+
3165 }
+
3166
+
3167 return UUID;
+
3168
+
3169}
+
+
3170
+
+
3171std::vector<uint> CanopyGenerator::getAllUUIDs(uint PlantID ){
+
3172 std::vector<uint> UUIDs;
+
3173 if( UUID_trunk.size()>PlantID ){
+
3174 UUIDs.insert(UUIDs.end(),UUID_trunk.at(PlantID).begin(),UUID_trunk.at(PlantID).end());
+
3175 }
+
3176 if( UUID_branch.size()>PlantID ){
+
3177 UUIDs.insert(UUIDs.end(),UUID_branch.at(PlantID).begin(),UUID_branch.at(PlantID).end());
+
3178 }
+
3179 if( UUID_leaf.size()>PlantID ){
+
3180 for( auto & i : UUID_leaf.at(PlantID)){
+
3181 UUIDs.insert(UUIDs.end(),i.begin(),i.end());
+
3182 }
+
3183 }
+
3184 if( UUID_fruit.size()>PlantID ){
+
3185 for( auto & j : UUID_fruit.at(PlantID)){
+
3186 for( auto & i : j ){
+
3187 UUIDs.insert(UUIDs.end(),i.begin(),i.end());
+
3188 }
+
3189 }
+
3190 }
+
3191
+
3192 cleanDeletedUUIDs(UUIDs);
+
3193
+
3194 return UUIDs;
+
3195}
+
+
3196
+
+
3197uint CanopyGenerator::getPlantCount(){
+
3198 return UUID_leaf.size();
+
3199}
+
+
3200
+
+
3201void CanopyGenerator::seedRandomGenerator(uint seed ){
+
3202 generator.seed(seed);
+
3203}
+
+
3204
+
+
3205void CanopyGenerator::disableMessages(){
+
3206 printmessages=false;
+
3207}
+
+
3208
+
+
3209void CanopyGenerator::enableMessages(){
+
3210 printmessages=true;
+
3211}
+
+
3212
+
+
3213void CanopyGenerator::buildIndividualPlants(helios::vec3 position){
+
3214 for (const auto& params : canopy_parameters_list) {
+
3215 params->buildPlant(*this, position);
+
3216 }
+
3217}
+
+
3218
+
+
3219void CanopyGenerator::buildIndividualPlants(){
+
3220 for (const auto& params : canopy_parameters_list) {
+
3221 vec3 position = params->canopy_origin;
+
3222 params->buildPlant(*this, position);
+
3223 }
+
3224}
+
+
3225
+
+
3226helios::vec3 interpolateTube(const std::vector<vec3> &P, float frac ){
+
3227
+
3228 assert( frac>=0 && frac<=1 );
+
3229 assert( !P.empty() );
+
3230
+
3231 float dl=0.f;
+
3232 for( int i=0; i<P.size()-1; i++ ){
+
3233 dl+=(P.at(i+1)-P.at(i)).magnitude();
+
3234 }
+
3235
+
3236 float f = 0;
+
3237 for( int i=0; i<P.size()-1; i++ ){
+
3238
+
3239 float dseg = (P.at(i+1)-P.at(i)).magnitude();
+
3240
+
3241 float fplus = f+dseg/dl;
+
3242
+
3243 if( fplus>=1.f ){
+
3244 fplus = 1.f+1e-3;
+
3245 }
+
3246
+
3247 if( frac>=f && (frac<=fplus || fabs(frac-fplus)<0.0001 ) ){
+
3248
+
3249 vec3 V = P.at(i) + (frac-f)/(fplus-f)*(P.at(i+1)-P.at(i));
+
3250
+
3251 return V;
+
3252 }
+
3253
+
3254 f=fplus;
+
3255 }
+
3256
+
3257 return P.front();
+
3258
+
3259}
+
+
3260
+
+
3261float interpolateTube(const std::vector<float> &P, float frac ){
+
3262
+
3263 assert( frac>=0 && frac<=1 );
+
3264 assert( !P.empty() );
+
3265
+
3266 float dl=0.f;
+
3267 for( int i=0; i<P.size()-1; i++ ){
+
3268 dl+=(P.at(i+1)-P.at(i));
+
3269 }
+
3270
+
3271 float f = 0;
+
3272 for( int i=0; i<P.size()-1; i++ ){
+
3273
+
3274 float dseg = (P.at(i+1)-P.at(i));
+
3275
+
3276 float fplus = f+dseg/dl;
+
3277
+
3278 if( fplus>=1.f ){
+
3279 fplus = 1.f+1e-3;
+
3280 }
+
3281
+
3282 if( frac>=f && (frac<=fplus || fabs(frac-fplus)<0.0001 ) ){
+
3283
+
3284 float V = P.at(i) + (frac-f)/(fplus-f)*(P.at(i+1)-P.at(i));
+
3285
+
3286 return V;
+
3287 }
+
3288
+
3289 f=fplus;
+
3290 }
+
3291
+
3292 return P.front();
+
3293
+
3294}
+
+
3295
+
+
3296float evaluateCDFresid(float thetaL, std::vector<float> &ru_v, const void *a_distribution) {
+
3297
+
3298 assert(!ru_v.empty());
+
3299 assert( ru_v.front()>=0.f && ru_v.front()<=1.f );
+
3300
+
3301 float ru = ru_v.front();
+
3302
+
3303 const char* distribution = reinterpret_cast<const char*>(a_distribution);
+
3304
+
3305 float CDFresid = INFINITY;
+
3306 if( strcmp(distribution,"planophile")==0 ){
+
3307 CDFresid = ru - 2.f/float(M_PI)*(thetaL+0.5f*sinf(2.f*thetaL));
+
3308 }else if( strcmp(distribution,"erectophile")==0 ){
+
3309 CDFresid = ru - 2.f/float(M_PI)*(thetaL-0.5f*sinf(2.f*thetaL));
+
3310 }else if( strcmp(distribution,"plagiophile")==0 ){
+
3311 CDFresid = ru - 2.f/float(M_PI)*(thetaL-0.25f*sinf(4.f*thetaL));
+
3312 }else if( strcmp(distribution,"extremophile")==0 ){
+
3313 CDFresid = ru - 2.f/float(M_PI)*(thetaL+0.25f*sinf(4.f*thetaL));
+
3314 }
+
3315
+
3316 return CDFresid;
+
3317
+
3318}
+
+
3319
+
3320float CanopyGenerator::sampleLeafPDF( const char* distribution ){
+
3321
+
3322 float thetaL;
+
3323
+
3324 std::uniform_real_distribution<float> unif_distribution;
+
3325
+
3326 float ru = unif_distribution(generator);
+
3327
+
3328 if( strcmp(distribution,"spherical")==0 ){
+
3329 thetaL = acos_safe(1.f-ru);
+
3330 }else if( strcmp(distribution,"uniform")==0 ){
+
3331 thetaL = ru*0.5f*float(M_PI);
+
3332 }else if( strcmp(distribution,"planophile")==0 || strcmp(distribution,"erectophile")==0 || strcmp(distribution,"plagiophile")==0 || strcmp(distribution,"extremophile")==0 ){
+
3333
+
3334 std::vector<float> args{ru};
+
3335
+
3336 thetaL = fzero( evaluateCDFresid, args, distribution, 0.25f );
+
3337
+
3338 }else{
+
3339 throw(std::runtime_error("ERROR (sampleLeafPDF): Invalid leaf angle distribution of " + std::string(distribution) + " specified."));
+
3340 }
+
3341
+
3342 return thetaL;
+
3343
+
3344}
+
3345
+
+
3346void CanopyGenerator::createElementLabels() {
+
3347 enable_element_labels = true;
+
3348}
+
+
3349
+
+
3350void CanopyGenerator::disableElementLabels() {
+
3351 enable_element_labels = false;
+
3352}
-
evaluateCDFresid
float evaluateCDFresid(float thetaL, std::vector< float > &ru_v, const void *a_distribution)
Evaluate the error between a predicted and actual leaf angle cumulative distribution at a given leaf ...
Definition CanopyGenerator.cpp:3055
-
interpolateTube
helios::vec3 interpolateTube(const std::vector< vec3 > &P, float frac)
Interpolate the position of a point along a tube.
Definition CanopyGenerator.cpp:2985
-
getVariation
float getVariation(float V, std::minstd_rand0 &generator)
Draw a random number from a uniform distribution between -V and V.
Definition CanopyGenerator.cpp:2775
+
evaluateCDFresid
float evaluateCDFresid(float thetaL, std::vector< float > &ru_v, const void *a_distribution)
Evaluate the error between a predicted and actual leaf angle cumulative distribution at a given leaf ...
Definition CanopyGenerator.cpp:3296
+
interpolateTube
helios::vec3 interpolateTube(const std::vector< vec3 > &P, float frac)
Interpolate the position of a point along a tube.
Definition CanopyGenerator.cpp:3226
+
getVariation
float getVariation(float V, std::minstd_rand0 &generator)
Draw a random number from a uniform distribution between -V and V.
Definition CanopyGenerator.cpp:3003
-
evaluateCDFresid
float evaluateCDFresid(float thetaL, std::vector< float > &ru_v, const void *a_distribution)
Evaluate the error between a predicted and actual leaf angle cumulative distribution at a given leaf ...
Definition CanopyGenerator.cpp:3055
- +
evaluateCDFresid
float evaluateCDFresid(float thetaL, std::vector< float > &ru_v, const void *a_distribution)
Evaluate the error between a predicted and actual leaf angle cumulative distribution at a given leaf ...
Definition CanopyGenerator.cpp:3296
+
getVariation
float getVariation(float V, std::minstd_rand0 &generator)
Draw a random number from a uniform distribution between -V and V.
Definition CanopyGenerator.cpp:3003
+
CanopyGenerator::whitespruce
uint whitespruce(const WhiteSpruceCanopyParameters &params, const helios::vec3 &origin)
Function to add an individual white spruce tree.
Definition whitespruce.cpp:6
-
CanopyGenerator::buildCanopy
void buildCanopy(const HomogeneousCanopyParameters &params)
Build a canopy consisting of a homogeneous volume of leaves.
Definition CanopyGenerator.cpp:2151
+
CanopyGenerator::buildCanopy
void buildCanopy(const HomogeneousCanopyParameters &params)
Build a canopy consisting of a homogeneous volume of leaves.
Definition CanopyGenerator.cpp:2339
+
CanopyGenerator::storeCanopyParameters
void storeCanopyParameters(Args &&... args)
Stores the given canopy parameters.
Definition CanopyGenerator.cpp:2054
CanopyGenerator::sorghum
uint sorghum(const SorghumCanopyParameters &params, const helios::vec3 &origin)
Function to add an individual sorghum plant.
Definition sorghum.cpp:8
-
CanopyGenerator::getLeafUUIDs
std::vector< std::vector< uint > > getLeafUUIDs(uint PlantID)
Get the unique universal identifiers (UUIDs) for the primitives that make up the plant leaves.
Definition CanopyGenerator.cpp:2887
-
CanopyGenerator::enableMessages
void enableMessages()
Enable standard messages to be printed to screen (default is to enable messages)
Definition CanopyGenerator.cpp:2981
-
CanopyGenerator::getTrunkUUIDs
std::vector< uint > getTrunkUUIDs()
Get the unique universal identifiers (UUIDs) for all trunk primitives in a single 1D vector.
Definition CanopyGenerator.cpp:2864
+
CanopyGenerator::getLeafUUIDs
std::vector< std::vector< uint > > getLeafUUIDs(uint PlantID)
Get the unique universal identifiers (UUIDs) for the primitives that make up the plant leaves.
Definition CanopyGenerator.cpp:3115
+
CanopyGenerator::enableMessages
void enableMessages()
Enable standard messages to be printed to screen (default is to enable messages)
Definition CanopyGenerator.cpp:3209
+
CanopyGenerator::getTrunkUUIDs
std::vector< uint > getTrunkUUIDs()
Get the unique universal identifiers (UUIDs) for all trunk primitives in a single 1D vector.
Definition CanopyGenerator.cpp:3092
CanopyGenerator::tomato
uint tomato(const TomatoParameters &params, const helios::vec3 &origin)
Function to add an individual tomato plant.
Definition tomato.cpp:139
-
CanopyGenerator::buildGround
void buildGround(const helios::vec3 &ground_origin, const helios::vec2 &ground_extent, const helios::int2 &texture_subtiles, const helios::int2 &texture_subpatches, const char *ground_texture_file)
Build a ground consisting of texture sub-tiles and sub-patches, which can be different sizes.
Definition CanopyGenerator.cpp:2113
+
CanopyGenerator::buildGround
void buildGround(const helios::vec3 &ground_origin, const helios::vec2 &ground_extent, const helios::int2 &texture_subtiles, const helios::int2 &texture_subpatches, const char *ground_texture_file)
Build a ground consisting of texture sub-tiles and sub-patches, which can be different sizes.
Definition CanopyGenerator.cpp:2295
CanopyGenerator::strawberry
uint strawberry(const StrawberryParameters &params, const helios::vec3 &origin)
Function to add an individual strawberry plant.
Definition strawberry.cpp:215
-
CanopyGenerator::getGroundUUIDs
std::vector< uint > getGroundUUIDs()
Get the unique universal identifiers (UUIDs) for the primitives that make up the ground.
Definition CanopyGenerator.cpp:2927
-
CanopyGenerator::loadXML
void loadXML(const char *filename)
Build canopy geometries based on parameters specified in an XML file.
Definition CanopyGenerator.cpp:783
-
CanopyGenerator::getLeafUUIDs
std::vector< uint > getLeafUUIDs()
Get the unique universal identifiers (UUIDs) for all leaf primitives in a single 1D vector.
Definition CanopyGenerator.cpp:2897
-
CanopyGenerator::getBranchUUIDs
std::vector< uint > getBranchUUIDs()
Get the unique universal identifiers (UUIDs) for all branch primitives in a single 1D vector.
Definition CanopyGenerator.cpp:2881
-
CanopyGenerator::grapevineSplit
uint grapevineSplit(const SplitGrapevineParameters &params, const helios::vec3 &origin)
Function to add an individual grapevine plant on a split trellis.
Definition grapevine.cpp:429
-
CanopyGenerator::getAllUUIDs
std::vector< uint > getAllUUIDs(uint PlantID)
Get the unique universal identifiers (UUIDs) for all primitives that make up the tree.
Definition CanopyGenerator.cpp:2943
-
CanopyGenerator::grapevineGoblet
uint grapevineGoblet(const GobletGrapevineParameters &params, const helios::vec3 &origin)
Function to add an individual grapevine plant on a goblet (vent a taille) trellis.
Definition grapevine.cpp:959
-
CanopyGenerator::disableElementLabels
void disableElementLabels()
Toggle off primitive data element type labels.
Definition CanopyGenerator.cpp:3109
-
CanopyGenerator::grapevineUnilateral
uint grapevineUnilateral(const UnilateralGrapevineParameters &params, const helios::vec3 &origin)
Function to add an individual grapevine plant on a unilateral trellis.
Definition grapevine.cpp:759
-
CanopyGenerator::disableMessages
void disableMessages()
Disable standard messages from being printed to screen (default is to enable messages)
Definition CanopyGenerator.cpp:2977
+
CanopyGenerator::getGroundUUIDs
std::vector< uint > getGroundUUIDs()
Get the unique universal identifiers (UUIDs) for the primitives that make up the ground.
Definition CanopyGenerator.cpp:3155
+
CanopyGenerator::getLeafUUIDs
std::vector< uint > getLeafUUIDs()
Get the unique universal identifiers (UUIDs) for all leaf primitives in a single 1D vector.
Definition CanopyGenerator.cpp:3125
+
CanopyGenerator::getBranchUUIDs
std::vector< uint > getBranchUUIDs()
Get the unique universal identifiers (UUIDs) for all branch primitives in a single 1D vector.
Definition CanopyGenerator.cpp:3109
+
CanopyGenerator::buildCanopies
void buildCanopies()
Builds canopies for all the stored canopy parameters.
Definition CanopyGenerator.cpp:2333
+
CanopyGenerator::grapevineSplit
uint grapevineSplit(const SplitGrapevineParameters &params, const helios::vec3 &origin)
Function to add an individual grapevine plant on a split trellis.
Definition grapevine.cpp:463
+
CanopyGenerator::getAllUUIDs
std::vector< uint > getAllUUIDs(uint PlantID)
Get the unique universal identifiers (UUIDs) for all primitives that make up the tree.
Definition CanopyGenerator.cpp:3171
+
CanopyGenerator::grapevineGoblet
uint grapevineGoblet(const GobletGrapevineParameters &params, const helios::vec3 &origin)
Function to add an individual grapevine plant on a goblet (vent a taille) trellis.
Definition grapevine.cpp:1064
+
CanopyGenerator::disableElementLabels
void disableElementLabels()
Toggle off primitive data element type labels.
Definition CanopyGenerator.cpp:3350
+
CanopyGenerator::loadXML
void loadXML(const char *filename, bool build=true)
Reads the XML file of the given name and stores all the configured canopy parameters.
Definition CanopyGenerator.cpp:2067
+
CanopyGenerator::grapevineUnilateral
uint grapevineUnilateral(const UnilateralGrapevineParameters &params, const helios::vec3 &origin)
Function to add an individual grapevine plant on a unilateral trellis.
Definition grapevine.cpp:829
+
CanopyGenerator::disableMessages
void disableMessages()
Disable standard messages from being printed to screen (default is to enable messages)
Definition CanopyGenerator.cpp:3205
CanopyGenerator::grapevineVSP
uint grapevineVSP(const VSPGrapevineParameters &params, const helios::vec3 &origin)
Function to add an individual grapevine plant on a vertical shoot positioned (VSP) trellis.
Definition grapevine.cpp:149
-
CanopyGenerator::getPlantCount
uint getPlantCount()
Get the current number of plants added to the Canopy Generator.
Definition CanopyGenerator.cpp:2969
-
CanopyGenerator::getFruitUUIDs
std::vector< uint > getFruitUUIDs()
Get the unique universal identifiers (UUIDs) for all fruit primitives in a single 1D vector.
Definition CanopyGenerator.cpp:2914
-
CanopyGenerator::CanopyGenerator
CanopyGenerator(helios::Context *context)
Canopy geometry generator constructor.
Definition CanopyGenerator.cpp:622
-
CanopyGenerator::seedRandomGenerator
void seedRandomGenerator(uint seed)
Seed the random number generator. This can be useful for generating repeatable trees,...
Definition CanopyGenerator.cpp:2973
+
CanopyGenerator::getPlantCount
uint getPlantCount()
Get the current number of plants added to the Canopy Generator.
Definition CanopyGenerator.cpp:3197
+
CanopyGenerator::getFruitUUIDs
std::vector< uint > getFruitUUIDs()
Get the unique universal identifiers (UUIDs) for all fruit primitives in a single 1D vector.
Definition CanopyGenerator.cpp:3142
+
CanopyGenerator::CanopyGenerator
CanopyGenerator(helios::Context *context)
Canopy geometry generator constructor.
Definition CanopyGenerator.cpp:1892
+
CanopyGenerator::seedRandomGenerator
void seedRandomGenerator(uint seed)
Seed the random number generator. This can be useful for generating repeatable trees,...
Definition CanopyGenerator.cpp:3201
CanopyGenerator::bean
uint bean(const BeanParameters &params, const helios::vec3 &origin)
Function to add an individual bean plant.
Definition bean.cpp:295
-
CanopyGenerator::createElementLabels
void createElementLabels()
Create primitive data that explicitly labels all primitives according to the plant element they corre...
Definition CanopyGenerator.cpp:3105
-
CanopyGenerator::selfTest
int selfTest()
Unit testing routine.
Definition CanopyGenerator.cpp:636
+
CanopyGenerator::buildIndividualPlants
void buildIndividualPlants()
Builds individual plants based on the stored canopy parameters (using canopy_origin as the position)
Definition CanopyGenerator.cpp:3219
+
CanopyGenerator::createElementLabels
void createElementLabels()
Create primitive data that explicitly labels all primitives according to the plant element they corre...
Definition CanopyGenerator.cpp:3346
+
CanopyGenerator::selfTest
int selfTest()
Unit testing routine.
Definition CanopyGenerator.cpp:1906
CanopyGenerator::walnut
uint walnut(const WalnutCanopyParameters &params, const helios::vec3 &origin)
Function to add an individual walnut tree.
Definition walnut.cpp:333
-
helios::CompoundObject::rotate
void rotate(float rotation_radians, const char *rotation_axis_xyz_string)
Method to rotate a Compound Object about the x-, y-, or z-axis.
Definition Context.cpp:2362
-
helios::CompoundObject::translate
void translate(const helios::vec3 &shift)
Method to translate/shift a Compound Object.
Definition Context.cpp:2338
-
helios::CompoundObject::getPrimitiveUUIDs
std::vector< uint > getPrimitiveUUIDs() const
Get the UUIDs for all primitives contained in the object.
Definition Context.cpp:2241
+
helios::CompoundObject::rotate
void rotate(float rotation_radians, const char *rotation_axis_xyz_string)
Method to rotate a Compound Object about the x-, y-, or z-axis.
Definition Context.cpp:2357
+
helios::CompoundObject::translate
void translate(const helios::vec3 &shift)
Method to translate/shift a Compound Object.
Definition Context.cpp:2333
+
helios::CompoundObject::getPrimitiveUUIDs
std::vector< uint > getPrimitiveUUIDs() const
Get the UUIDs for all primitives contained in the object.
Definition Context.cpp:2236
helios::Context
Stores the state associated with simulation.
Definition Context.h:1882
-
helios::Context::copyObject
uint copyObject(uint ObjID)
Make a copy of a Compound Objects from the context.
Definition Context.cpp:2627
-
helios::Context::deletePrimitive
void deletePrimitive(uint UUID)
Delete a single primitive from the context.
Definition Context.cpp:1531
-
helios::Context::getObjectPointer
CompoundObject * getObjectPointer(uint ObjID) const
Get a pointer to a Compound Object.
Definition Context.cpp:2559
-
helios::Context::getAllUUIDs
std::vector< uint > getAllUUIDs() const
Get all primitive UUIDs currently in the Context.
Definition Context.cpp:1758
-
helios::Context::deleteObject
void deleteObject(uint ObjID)
Delete a single Compound Object from the context.
Definition Context.cpp:2594
-
helios::Context::doesPrimitiveExist
bool doesPrimitiveExist(uint UUID) const
Check if primitive exists for a given UUID.
Definition Context.cpp:1654
+
helios::Context::copyObject
uint copyObject(uint ObjID)
Make a copy of a Compound Objects from the context.
Definition Context.cpp:2622
+
helios::Context::deletePrimitive
void deletePrimitive(uint UUID)
Delete a single primitive from the context.
Definition Context.cpp:1526
+
helios::Context::getObjectPointer
CompoundObject * getObjectPointer(uint ObjID) const
Get a pointer to a Compound Object.
Definition Context.cpp:2554
+
helios::Context::randu
float randu()
Draw a random number from a uniform distribution between 0 and 1.
Definition Context.cpp:1168
+
helios::Context::getAllUUIDs
std::vector< uint > getAllUUIDs() const
Get all primitive UUIDs currently in the Context.
Definition Context.cpp:1753
+
helios::Context::deleteObject
void deleteObject(uint ObjID)
Delete a single Compound Object from the context.
Definition Context.cpp:2589
+
helios::Context::doesPrimitiveExist
bool doesPrimitiveExist(uint UUID) const
Check if primitive exists for a given UUID.
Definition Context.cpp:1649
helios::Texture
Texture map data structure.
Definition Context.h:67
-
helios::Texture::getSolidFraction
float getSolidFraction() const
Get the solid fraction of the texture transparency channel (if it exists)
Definition Context.cpp:148
+
helios::Texture::getSolidFraction
float getSolidFraction() const
Get the solid fraction of the texture transparency channel (if it exists)
Definition Context.cpp:143
helios::rotatePointAboutLine
vec3 rotatePointAboutLine(const vec3 &point, const vec3 &line_base, const vec3 &line_direction, float theta)
Rotate a 3D vector about an arbitrary line.
Definition global.cpp:140
-
helios::XMLloadrgba
helios::RGBAcolor XMLloadrgba(pugi::xml_node node, const char *field)
Function to load and convert a field in a pugi XML node into an RGBA color vector.
Definition global.cpp:2878
-
helios::XMLloadvec2
helios::vec2 XMLloadvec2(pugi::xml_node node, const char *field)
Function to load and convert a field in a pugi XML node into a vec2.
Definition global.cpp:2773
-
helios::fzero
float fzero(float(*function)(float value, std::vector< float > &variables, const void *parameters), std::vector< float > &variables, const void *parameters, float init_guess, float err_tol=0.0001f, int max_iterations=100)
Use Newton-Raphson method to find the zero of a function.
Definition global.cpp:2893
-
helios::XMLloadint
int XMLloadint(pugi::xml_node node, const char *field)
Function to load and convert a field in a pugi XML node into an int.
Definition global.cpp:2741
-
helios::XMLloadfloat
float XMLloadfloat(pugi::xml_node node, const char *field)
Function to load and convert a field in a pugi XML node into a float.
Definition global.cpp:2724
-
helios::XMLloadstring
std::string XMLloadstring(pugi::xml_node node, const char *field)
Function to load and convert a field in a pugi XML node into a string.
Definition global.cpp:2758
-
helios::XMLloadvec3
helios::vec3 XMLloadvec3(pugi::xml_node node, const char *field)
Function to load and convert a field in a pugi XML node into a vec3.
Definition global.cpp:2788
-
helios::XMLloadint2
helios::int2 XMLloadint2(pugi::xml_node node, const char *field)
Function to load and convert a field in a pugi XML node into a vec2.
Definition global.cpp:2818
-
helios::Context::addTile
std::vector< uint > addTile(const vec3 &center, const vec2 &size, const SphericalCoord &rotation, const int2 &subdiv)
Add a patch that is subdivided into a regular grid of sub-patches (tiled)
Definition Context.cpp:5686
-
helios::Context::addTileObject
uint addTileObject(const vec3 &center, const vec2 &size, const SphericalCoord &rotation, const int2 &subdiv)
Add a patch that is subdivided into a regular grid of sub-patches (tiled)
Definition Context.cpp:4460
-
helios::flatten
std::vector< int > flatten(const std::vector< std::vector< int > > &vec)
Function to flatten a 2D int vector into a 1D vector.
Definition global.cpp:1859
+
helios::XMLloadrgba
helios::RGBAcolor XMLloadrgba(pugi::xml_node node, const char *field)
Function to load and convert a field in a pugi XML node into an RGBA color vector.
Definition global.cpp:2880
+
helios::XMLloadvec2
helios::vec2 XMLloadvec2(pugi::xml_node node, const char *field)
Function to load and convert a field in a pugi XML node into a vec2.
Definition global.cpp:2775
+
helios::fzero
float fzero(float(*function)(float value, std::vector< float > &variables, const void *parameters), std::vector< float > &variables, const void *parameters, float init_guess, float err_tol=0.0001f, int max_iterations=100)
Use Newton-Raphson method to find the zero of a function.
Definition global.cpp:2895
+
helios::XMLloadint
int XMLloadint(pugi::xml_node node, const char *field)
Function to load and convert a field in a pugi XML node into an int.
Definition global.cpp:2743
+
helios::XMLloadfloat
float XMLloadfloat(pugi::xml_node node, const char *field)
Function to load and convert a field in a pugi XML node into a float.
Definition global.cpp:2726
+
helios::XMLloadstring
std::string XMLloadstring(pugi::xml_node node, const char *field)
Function to load and convert a field in a pugi XML node into a string.
Definition global.cpp:2760
+
helios::XMLloadvec3
helios::vec3 XMLloadvec3(pugi::xml_node node, const char *field)
Function to load and convert a field in a pugi XML node into a vec3.
Definition global.cpp:2790
+
helios::XMLloadint2
helios::int2 XMLloadint2(pugi::xml_node node, const char *field)
Function to load and convert a field in a pugi XML node into a vec2.
Definition global.cpp:2820
+
helios::Context::addTile
std::vector< uint > addTile(const vec3 &center, const vec2 &size, const SphericalCoord &rotation, const int2 &subdiv)
Add a patch that is subdivided into a regular grid of sub-patches (tiled)
Definition Context.cpp:5753
+
helios::Context::addTileObject
uint addTileObject(const vec3 &center, const vec2 &size, const SphericalCoord &rotation, const int2 &subdiv)
Add a patch that is subdivided into a regular grid of sub-patches (tiled)
Definition Context.cpp:4512
+
helios::flatten
std::vector< int > flatten(const std::vector< std::vector< int > > &vec)
Function to flatten a 2D int vector into a 1D vector.
Definition global.cpp:1861
helios::acos_safe
float acos_safe(float x)
arccosine function to handle cases when round-off errors cause an argument <-1 or >1,...
Definition global.cpp:241
helios::make_int2
int2 make_int2(int x, int y)
Make an int2 vector from two ints.
Definition helios_vector_types.h:99
-
helios::make_vec2
vec2 make_vec2(float x, float y)
Make a vec2 from two floats.
Definition helios_vector_types.h:432
-
helios::make_RGBcolor
RGBcolor make_RGBcolor(float r, float g, float b)
Make an RGBcolor vector.
Definition helios_vector_types.h:951
-
helios::make_vec3
vec3 make_vec3(float x, float y, float z)
Make a vec3 from three floats.
Definition helios_vector_types.h:587
-
helios::make_SphericalCoord
SphericalCoord make_SphericalCoord(float elevation_radians, float azimuth_radians)
Make a SphericalCoord by specifying elevation and azimuth.
Definition helios_vector_types.h:1536
-
BeanParameters
Parameters defining the bean plant canopy.
Definition CanopyGenerator.h:927
-
BeanParameters::plant_spacing
float plant_spacing
Spacing between adjacent plants along the row direction.
Definition CanopyGenerator.h:957
-
BeanParameters::leaflet_length
float leaflet_length
Length of the leaflet from base to tip leaf.
Definition CanopyGenerator.h:954
-
BeanParameters::pod_length
float pod_length
Length of bean pods.
Definition CanopyGenerator.h:975
-
BeanParameters::leaf_length
float leaf_length
Maximum width of leaves.
Definition CanopyGenerator.h:933
-
BeanParameters::BeanParameters
BeanParameters()
Default constructor.
Definition CanopyGenerator.cpp:584
-
BeanParameters::shoot_subdivisions
int shoot_subdivisions
Number of radial subdivisions for shoot tubes.
Definition CanopyGenerator.h:945
-
BeanParameters::pod_color
helios::RGBcolor pod_color
Color of bean pods.
Definition CanopyGenerator.h:978
-
BeanParameters::leaf_subdivisions
helios::int2 leaf_subdivisions
Number of sub-division segments per leaf.
Definition CanopyGenerator.h:936
-
BeanParameters::canopy_origin
helios::vec3 canopy_origin
Cartesian (x,y,z) coordinate of the bottom center point of the canopy (i.e., specifying z=0 places th...
Definition CanopyGenerator.h:969
-
BeanParameters::stem_length
float stem_length
Length of stems before splitting to leaflets.
Definition CanopyGenerator.h:951
-
BeanParameters::canopy_rotation
float canopy_rotation
Azimuthal rotation of the canopy about the canopy origin. Note that if canopy_rotation is not equal t...
Definition CanopyGenerator.h:972
-
BeanParameters::pod_subdivisions
uint pod_subdivisions
Number of lengthwise subdivisions making up pods.
Definition CanopyGenerator.h:981
-
BeanParameters::stem_radius
float stem_radius
Radius of main stem at base.
Definition CanopyGenerator.h:948
-
BeanParameters::germination_probability
float germination_probability
Probability that a plant in the canopy germinated.
Definition CanopyGenerator.h:966
-
BeanParameters::leaf_texture_file
std::string leaf_texture_file
Path to texture map file for leaves.
Definition CanopyGenerator.h:939
-
BeanParameters::shoot_color
helios::RGBcolor shoot_color
Color of shoots.
Definition CanopyGenerator.h:942
-
BeanParameters::row_spacing
float row_spacing
Spacing between plant rows.
Definition CanopyGenerator.h:960
-
BeanParameters::plant_count
helios::int2 plant_count
Number of crowns/plants in the x- and y-directions.
Definition CanopyGenerator.h:963
-
ConicalCrownsCanopyParameters
Parameters defining the canopy with conical crowns.
Definition CanopyGenerator.h:111
-
ConicalCrownsCanopyParameters::plant_count
helios::int2 plant_count
Number of crowns/plants in the x- and y-directions.
Definition CanopyGenerator.h:147
-
ConicalCrownsCanopyParameters::leaf_angle_distribution
std::string leaf_angle_distribution
Leaf angle distribution - one of "spherical", "uniform", "erectophile", "planophile",...
Definition CanopyGenerator.h:129
-
ConicalCrownsCanopyParameters::canopy_rotation
float canopy_rotation
Azimuthal rotation of the canopy about the canopy origin. Note that if canopy_rotation is not equal t...
Definition CanopyGenerator.h:153
-
ConicalCrownsCanopyParameters::ConicalCrownsCanopyParameters
ConicalCrownsCanopyParameters()
Default constructor.
Definition CanopyGenerator.cpp:69
-
ConicalCrownsCanopyParameters::leaf_subdivisions
helios::int2 leaf_subdivisions
Number of sub-division segments per leaf.
Definition CanopyGenerator.h:120
-
ConicalCrownsCanopyParameters::leaf_color
helios::RGBcolor leaf_color
Leaf color if no texture map file is provided.
Definition CanopyGenerator.h:126
-
ConicalCrownsCanopyParameters::leaf_texture_file
std::string leaf_texture_file
Path to texture map file for leaves. If left empty, no texture will be used.
Definition CanopyGenerator.h:123
-
ConicalCrownsCanopyParameters::crown_height
float crown_height
Height of the conical crowns.
Definition CanopyGenerator.h:138
-
ConicalCrownsCanopyParameters::plant_spacing
helios::vec2 plant_spacing
Spacing between adjacent crowns in the x- and y-directions. Note that if canopy_configuration='random...
Definition CanopyGenerator.h:144
-
ConicalCrownsCanopyParameters::canopy_configuration
std::string canopy_configuration
Specifies whether to use a uniformly spaced canopy (canopy_configuration="uniform") or a randomly arr...
Definition CanopyGenerator.h:141
-
ConicalCrownsCanopyParameters::leaf_size
helios::vec2 leaf_size
Length of leaf in x- and y- directions (prior to rotation)
Definition CanopyGenerator.h:117
-
ConicalCrownsCanopyParameters::crown_radius
float crown_radius
Radius of the conical crowns at the base.
Definition CanopyGenerator.h:135
-
ConicalCrownsCanopyParameters::canopy_origin
helios::vec3 canopy_origin
Cartesian (x,y,z) coordinate of the bottom center point of the canopy (i.e., specifying z=0 places th...
Definition CanopyGenerator.h:150
-
ConicalCrownsCanopyParameters::leaf_area_density
float leaf_area_density
One-sided leaf area density within spherical crowns.
Definition CanopyGenerator.h:132
-
GobletGrapevineParameters
Parameters defining the grapevine canopy with goblet (vent a taille) trellis.
Definition CanopyGenerator.h:411
-
GobletGrapevineParameters::GobletGrapevineParameters
GobletGrapevineParameters()
Default constructor.
Definition CanopyGenerator.cpp:253
-
GobletGrapevineParameters::leaf_texture_file
std::string leaf_texture_file
Path to texture map file for leaves.
Definition CanopyGenerator.h:423
-
GobletGrapevineParameters::cordon_radius
float cordon_radius
Radius of cordon branches.
Definition CanopyGenerator.h:447
-
GobletGrapevineParameters::cluster_radius
float cluster_radius
Maximum horizontal radius of grape clusters.
Definition CanopyGenerator.h:474
-
GobletGrapevineParameters::shoots_per_cordon
uint shoots_per_cordon
Number of shoots on each cordon.
Definition CanopyGenerator.h:456
-
GobletGrapevineParameters::leaf_spacing_fraction
float leaf_spacing_fraction
Spacing between adjacent leaves as a fraction of the local leaf width. E.g., leaf_spacing_fraction = ...
Definition CanopyGenerator.h:459
-
GobletGrapevineParameters::row_spacing
float row_spacing
Spacing between plant rows.
Definition CanopyGenerator.h:435
-
GobletGrapevineParameters::wood_subdivisions
int wood_subdivisions
Number of radial subdivisions for trunk/cordon/shoot tubes.
Definition CanopyGenerator.h:429
-
GobletGrapevineParameters::leaf_subdivisions
helios::int2 leaf_subdivisions
Number of sub-division segments per leaf.
Definition CanopyGenerator.h:420
-
GobletGrapevineParameters::shoot_length
float shoot_length
Length of shoots.
Definition CanopyGenerator.h:450
-
GobletGrapevineParameters::canopy_origin
helios::vec3 canopy_origin
Cartesian (x,y,z) coordinate of the bottom center point of the canopy (i.e., specifying z=0 places th...
Definition CanopyGenerator.h:465
-
GobletGrapevineParameters::shoot_radius
float shoot_radius
Radius of shoot branches.
Definition CanopyGenerator.h:453
-
GobletGrapevineParameters::grape_subdivisions
uint grape_subdivisions
Number of azimuthal and zenithal subdivisions making up berries (will result in roughly grape_subdivi...
Definition CanopyGenerator.h:483
-
GobletGrapevineParameters::grape_color
helios::RGBcolor grape_color
Color of grapes.
Definition CanopyGenerator.h:480
-
GobletGrapevineParameters::grape_radius
float grape_radius
Radius of grape berries.
Definition CanopyGenerator.h:471
-
GobletGrapevineParameters::trunk_radius
float trunk_radius
Radius of the trunk at the widest point.
Definition CanopyGenerator.h:441
-
GobletGrapevineParameters::wood_texture_file
std::string wood_texture_file
Path to texture map file for trunks/branches.
Definition CanopyGenerator.h:426
-
GobletGrapevineParameters::plant_count
helios::int2 plant_count
Number of crowns/plants in the x- and y-directions.
Definition CanopyGenerator.h:462
-
GobletGrapevineParameters::cluster_height_max
float cluster_height_max
Maximum height of grape clusters along the shoot as a fraction of the total shoot length.
Definition CanopyGenerator.h:477
-
GobletGrapevineParameters::plant_spacing
float plant_spacing
Spacing between adjacent plants along the row direction.
Definition CanopyGenerator.h:432
-
GobletGrapevineParameters::trunk_height
float trunk_height
Distance between the ground and top of trunks.
Definition CanopyGenerator.h:438
-
GobletGrapevineParameters::cordon_height
float cordon_height
Distance between the ground and cordon. Note - must be greater than or equal to the trunk height.
Definition CanopyGenerator.h:444
-
GobletGrapevineParameters::leaf_width
float leaf_width
Maximum width of leaves. Leaf width increases logarithmically from the shoot tip, so leaf_width is th...
Definition CanopyGenerator.h:417
-
GobletGrapevineParameters::canopy_rotation
float canopy_rotation
Azimuthal rotation of the canopy about the canopy origin. Note that if canopy_rotation is not equal t...
Definition CanopyGenerator.h:468
-
HomogeneousCanopyParameters
Parameters defining the homogeneous canopy.
Definition CanopyGenerator.h:23
-
HomogeneousCanopyParameters::canopy_origin
helios::vec3 canopy_origin
Cartesian (x,y,z) coordinate of the bottom center point of the canopy (i.e., specifying z=0 places th...
Definition CanopyGenerator.h:53
-
HomogeneousCanopyParameters::buffer
std::string buffer
String specifying whether leaves should be placed so that leaf edges do not fall outside the specifie...
Definition CanopyGenerator.h:59
-
HomogeneousCanopyParameters::leaf_size
helios::vec2 leaf_size
Length of leaf in x- and y- directions (prior to rotation)
Definition CanopyGenerator.h:29
-
HomogeneousCanopyParameters::leaf_color
helios::RGBcolor leaf_color
Leaf color if no texture map file is provided.
Definition CanopyGenerator.h:38
-
HomogeneousCanopyParameters::canopy_extent
helios::vec2 canopy_extent
Horizontal extent of the canopy in the x- and y-directions.
Definition CanopyGenerator.h:50
-
HomogeneousCanopyParameters::leaf_subdivisions
helios::int2 leaf_subdivisions
Number of sub-division segments per leaf.
Definition CanopyGenerator.h:32
-
HomogeneousCanopyParameters::canopy_height
float canopy_height
Height of the canopy.
Definition CanopyGenerator.h:47
-
HomogeneousCanopyParameters::leaf_angle_distribution
std::string leaf_angle_distribution
Leaf angle distribution - one of "spherical", "uniform", "erectophile", "planophile",...
Definition CanopyGenerator.h:41
-
HomogeneousCanopyParameters::HomogeneousCanopyParameters
HomogeneousCanopyParameters()
Default constructor.
Definition CanopyGenerator.cpp:21
-
HomogeneousCanopyParameters::leaf_texture_file
std::string leaf_texture_file
Path to texture map file for leaves. If left empty, no texture will be used.
Definition CanopyGenerator.h:35
-
HomogeneousCanopyParameters::leaf_area_index
float leaf_area_index
One-sided leaf area index of the canopy.
Definition CanopyGenerator.h:44
-
SorghumCanopyParameters
Parameters defining Sorghum plant canopy.
Definition CanopyGenerator.h:722
-
SorghumCanopyParameters::s5_stem_subdivisions
int s5_stem_subdivisions
Number of stem radial subdivisions for stage 5.
Definition CanopyGenerator.h:885
-
SorghumCanopyParameters::s2_stem_subdivisions
float s2_stem_subdivisions
Number of stem radial subdivisions for stage 2.
Definition CanopyGenerator.h:774
-
SorghumCanopyParameters::s1_leaf1_angle
float s1_leaf1_angle
Leaf1 vertical angle of rotation for stage 1.
Definition CanopyGenerator.h:751
-
SorghumCanopyParameters::s5_stem_length
float s5_stem_length
Length of the sorghum stem for stage 5.
Definition CanopyGenerator.h:876
-
SorghumCanopyParameters::s4_seed_texture_file
std::string s4_seed_texture_file
Texture map of the panicle for stage 4.
Definition CanopyGenerator.h:856
-
SorghumCanopyParameters::s5_number_of_leaves
int s5_number_of_leaves
Number of leaves for the sorghum plant, stage 5.
Definition CanopyGenerator.h:903
-
SorghumCanopyParameters::s5_mean_leaf_angle
float s5_mean_leaf_angle
Mean vertical angle of rotation of leaf for stage 5 in degrees; Standard deviation for the angle is 1...
Definition CanopyGenerator.h:906
-
SorghumCanopyParameters::s4_stem_length
float s4_stem_length
Length of the sorghum stem for stage 4.
Definition CanopyGenerator.h:841
-
SorghumCanopyParameters::s3_leaf_subdivisions
helios::int2 s3_leaf_subdivisions
Number of sub-division segments of leaf in the x- (length) and y- (width) direction for stage 3.
Definition CanopyGenerator.h:827
-
SorghumCanopyParameters::s1_leaf_texture_file
std::string s1_leaf_texture_file
Texture map for sorghum leaf1 for stage 1.
Definition CanopyGenerator.h:763
-
SorghumCanopyParameters::s1_leaf_size2
helios::vec2 s1_leaf_size2
Length of leaf2 in x- (length) and y- (width) directions (prior to rotation) for stage 1.
Definition CanopyGenerator.h:745
-
SorghumCanopyParameters::s4_stem_radius
float s4_stem_radius
Radius of the sorghum stem for stage 4.
Definition CanopyGenerator.h:844
-
SorghumCanopyParameters::s3_mean_leaf_angle
float s3_mean_leaf_angle
Mean vertical angle of rotation of leaf for stage 3 in degrees; Standard deviation for the leaves is ...
Definition CanopyGenerator.h:833
-
SorghumCanopyParameters::s4_stem_subdivisions
float s4_stem_subdivisions
Number of stem radial subdivisions for stage 4.
Definition CanopyGenerator.h:847
-
SorghumCanopyParameters::s2_leaf1_angle
float s2_leaf1_angle
Leaf1 vertical angle of rotation for stage 2.
Definition CanopyGenerator.h:792
-
SorghumCanopyParameters::s2_leaf_texture_file
std::string s2_leaf_texture_file
Texture map for sorghum leaf for stage 2.
Definition CanopyGenerator.h:810
-
SorghumCanopyParameters::s5_panicle_subdivisions
int s5_panicle_subdivisions
Number of panicle subdivisions for each grain sphere within a panicle, stage 5.
Definition CanopyGenerator.h:891
-
SorghumCanopyParameters::s2_leaf4_angle
float s2_leaf4_angle
Leaf4 vertical angle of rotation for stage 2.
Definition CanopyGenerator.h:801
-
SorghumCanopyParameters::s4_mean_leaf_angle
float s4_mean_leaf_angle
Mean vertical angle of rotation of leaf for stage 4 in degrees; Standard deviation for the angle is 5...
Definition CanopyGenerator.h:868
-
SorghumCanopyParameters::s2_leaf5_angle
float s2_leaf5_angle
Leaf5 vertical angle of rotation for stage 2.
Definition CanopyGenerator.h:804
-
SorghumCanopyParameters::s2_leaf_subdivisions
helios::int2 s2_leaf_subdivisions
Number of sub-division segments of leaf in the x- (length) and y- (width) direction for stage 2.
Definition CanopyGenerator.h:807
-
SorghumCanopyParameters::plant_spacing
float plant_spacing
Spacing between adjacent plants along the row direction.
Definition CanopyGenerator.h:913
-
SorghumCanopyParameters::canopy_origin
helios::vec3 canopy_origin
Cartesian (x,y,z) coordinate of the bottom center point of the canopy (i.e., specifying z=0 places th...
Definition CanopyGenerator.h:922
-
SorghumCanopyParameters::s4_leaf_size
helios::vec2 s4_leaf_size
Length of leaf in x- (length) and y- (width) directions (prior to rotation) for stage 4.
Definition CanopyGenerator.h:859
-
SorghumCanopyParameters::s2_leaf3_angle
float s2_leaf3_angle
Leaf3 vertical angle of rotation for stage 2.
Definition CanopyGenerator.h:798
-
SorghumCanopyParameters::s4_leaf_subdivisions
helios::int2 s4_leaf_subdivisions
Number of sub-division segments of leaf in the x- (length) and y- (width) direction for stage 4.
Definition CanopyGenerator.h:862
-
SorghumCanopyParameters::s2_stem_radius
float s2_stem_radius
Radius of the sorghum stem for stage 2.
Definition CanopyGenerator.h:771
-
SorghumCanopyParameters::SorghumCanopyParameters
SorghumCanopyParameters()
Default constructor.
Definition CanopyGenerator.cpp:451
-
SorghumCanopyParameters::s5_stem_bend
float s5_stem_bend
Bend of the stem from mid-section for stage 5. The distance from the mid-section of the stem to the i...
Definition CanopyGenerator.h:882
-
SorghumCanopyParameters::s1_leaf_size1
helios::vec2 s1_leaf_size1
Length of leaf1 in x- (length) and y- (width) directions (prior to rotation) for stage 1.
Definition CanopyGenerator.h:742
-
SorghumCanopyParameters::s5_stem_radius
float s5_stem_radius
Radius of the sorghum stem for stage 5.
Definition CanopyGenerator.h:879
-
SorghumCanopyParameters::plant_count
helios::int2 plant_count
Number of crowns/plants in the x- and y-directions.
Definition CanopyGenerator.h:919
-
SorghumCanopyParameters::s3_stem_radius
float s3_stem_radius
Radius of the sorghum stem for stage 3.
Definition CanopyGenerator.h:818
-
SorghumCanopyParameters::s5_leaf_texture_file
std::string s5_leaf_texture_file
Texture map for sorghum leaf, stage 5.
Definition CanopyGenerator.h:909
-
SorghumCanopyParameters::s5_leaf_subdivisions
helios::int2 s5_leaf_subdivisions
Number of sub-division segments of leaf in the x- (length) and y- (width) direction for stage 5.
Definition CanopyGenerator.h:900
-
SorghumCanopyParameters::s1_leaf_size3
helios::vec2 s1_leaf_size3
Length of leaf3 in x- (length) and y- (width) directions (prior to rotation) for stage 1.
Definition CanopyGenerator.h:748
-
SorghumCanopyParameters::s4_number_of_leaves
int s4_number_of_leaves
Number of leaves for the sorghum plant, stage 4.
Definition CanopyGenerator.h:865
-
SorghumCanopyParameters::s4_panicle_subdivisions
int s4_panicle_subdivisions
Number of panicle subdivisions for each grain sphere within a panicle, stage 4.
Definition CanopyGenerator.h:853
-
SorghumCanopyParameters::s3_stem_length
float s3_stem_length
Length of the sorghum stem for stage 3.
Definition CanopyGenerator.h:815
-
SorghumCanopyParameters::s3_leaf_texture_file
std::string s3_leaf_texture_file
Texture map for sorghum leaf for stage 3.
Definition CanopyGenerator.h:836
-
SorghumCanopyParameters::s2_leaf_size3
helios::vec2 s2_leaf_size3
Length of leaf3 in x- (length) and y- (width) directions (prior to rotation) for stage 2.
Definition CanopyGenerator.h:783
-
SorghumCanopyParameters::s1_stem_radius
float s1_stem_radius
Radius of the sorghum stem for stage 1.
Definition CanopyGenerator.h:736
-
SorghumCanopyParameters::s5_panicle_size
helios::vec2 s5_panicle_size
Size of panicle in x- and y- directions for stage 5.
Definition CanopyGenerator.h:888
-
SorghumCanopyParameters::s3_number_of_leaves
int s3_number_of_leaves
Number of leaves along the stem for stage 3.
Definition CanopyGenerator.h:830
-
SorghumCanopyParameters::s2_leaf_size5
helios::vec2 s2_leaf_size5
Length of leaf5 in x- (length) and y- (width) directions (prior to rotation) for stage 2.
Definition CanopyGenerator.h:789
-
SorghumCanopyParameters::s5_leaf_size
helios::vec2 s5_leaf_size
Length of leaf in x- (length) and y- (width) directions (prior to rotation) for stage 5.
Definition CanopyGenerator.h:897
-
SorghumCanopyParameters::s1_stem_subdivisions
float s1_stem_subdivisions
Number of stem radial subdivisions for stage 1.
Definition CanopyGenerator.h:739
-
SorghumCanopyParameters::s2_leaf_size4
helios::vec2 s2_leaf_size4
Length of leaf4 in x- (length) and y- (width) directions (prior to rotation) for stage 2.
Definition CanopyGenerator.h:786
-
SorghumCanopyParameters::s1_leaf_subdivisions
helios::int2 s1_leaf_subdivisions
Number of sub-division segments of leaf in the x- (length) and y- (width) direction for stage 1.
Definition CanopyGenerator.h:760
-
SorghumCanopyParameters::s4_leaf_texture_file
std::string s4_leaf_texture_file
Texture map for sorghum leaf, stage 4.
Definition CanopyGenerator.h:871
-
SorghumCanopyParameters::s2_leaf_size2
helios::vec2 s2_leaf_size2
Length of leaf2 in x- (length) and y- (width) directions (prior to rotation) for stage 2.
Definition CanopyGenerator.h:780
-
SorghumCanopyParameters::row_spacing
float row_spacing
Spacing between plant rows.
Definition CanopyGenerator.h:916
-
SorghumCanopyParameters::s3_leaf_size
helios::vec2 s3_leaf_size
Length of leaf in x- (length) and y- (width) directions (prior to rotation) for stage 3.
Definition CanopyGenerator.h:824
-
SorghumCanopyParameters::s2_stem_length
float s2_stem_length
Length of the sorghum stem for stage 2.
Definition CanopyGenerator.h:768
-
SorghumCanopyParameters::s1_leaf2_angle
float s1_leaf2_angle
Leaf2 vertical angle of rotation for stage 1.
Definition CanopyGenerator.h:754
-
SorghumCanopyParameters::s3_stem_subdivisions
float s3_stem_subdivisions
Number of stem radial subdivisions for stage 3.
Definition CanopyGenerator.h:821
-
SorghumCanopyParameters::s1_stem_length
float s1_stem_length
Length of the sorghum stem for stage 1.
Definition CanopyGenerator.h:733
-
SorghumCanopyParameters::sorghum_stage
int sorghum_stage
Sorghum categorized into 5 stages; 1 - Three leaf stage, 2 - Five leaf stage, 3 - Panicle initiation ...
Definition CanopyGenerator.h:728
-
SorghumCanopyParameters::s1_leaf3_angle
float s1_leaf3_angle
Leaf3 vertical angle of rotation for stage 1.
Definition CanopyGenerator.h:757
-
SorghumCanopyParameters::s2_leaf_size1
helios::vec2 s2_leaf_size1
Length of leaf1 in x- (length) and y- (width) directions (prior to rotation) for stage 2.
Definition CanopyGenerator.h:777
-
SorghumCanopyParameters::s5_seed_texture_file
std::string s5_seed_texture_file
Texture map of the panicle for stage 5.
Definition CanopyGenerator.h:894
-
SorghumCanopyParameters::s4_panicle_size
helios::vec2 s4_panicle_size
Size of panicle in x- and y- directions for stage 4.
Definition CanopyGenerator.h:850
-
SorghumCanopyParameters::s2_leaf2_angle
float s2_leaf2_angle
Leaf2 vertical angle of rotation for stage 2.
Definition CanopyGenerator.h:795
-
SphericalCrownsCanopyParameters
Parameters defining the canopy with spherical crowns.
Definition CanopyGenerator.h:64
-
SphericalCrownsCanopyParameters::crown_radius
helios::vec3 crown_radius
Radius of the spherical crowns.
Definition CanopyGenerator.h:88
-
SphericalCrownsCanopyParameters::leaf_size
helios::vec2 leaf_size
Length of leaf in x- and y- directions (prior to rotation)
Definition CanopyGenerator.h:70
-
SphericalCrownsCanopyParameters::canopy_rotation
float canopy_rotation
Azimuthal rotation of the canopy about the canopy origin. Note that if canopy_rotation is not equal t...
Definition CanopyGenerator.h:103
-
SphericalCrownsCanopyParameters::leaf_texture_file
std::string leaf_texture_file
Path to texture map file for leaves. If left empty, no texture will be used.
Definition CanopyGenerator.h:76
-
SphericalCrownsCanopyParameters::leaf_color
helios::RGBcolor leaf_color
Leaf color if no texture map file is provided.
Definition CanopyGenerator.h:79
-
SphericalCrownsCanopyParameters::plant_count
helios::int2 plant_count
Number of crowns/plants in the x- and y-directions.
Definition CanopyGenerator.h:97
-
SphericalCrownsCanopyParameters::plant_spacing
helios::vec2 plant_spacing
Spacing between adjacent crowns in the x- and y-directions. Note that if canopy_configuration='random...
Definition CanopyGenerator.h:94
-
SphericalCrownsCanopyParameters::SphericalCrownsCanopyParameters
SphericalCrownsCanopyParameters()
Default constructor.
Definition CanopyGenerator.cpp:43
-
SphericalCrownsCanopyParameters::leaf_subdivisions
helios::int2 leaf_subdivisions
Number of sub-division segments per leaf.
Definition CanopyGenerator.h:73
-
SphericalCrownsCanopyParameters::leaf_angle_distribution
std::string leaf_angle_distribution
Leaf angle distribution - one of "spherical", "uniform", "erectophile", "planophile",...
Definition CanopyGenerator.h:82
-
SphericalCrownsCanopyParameters::leaf_area_density
float leaf_area_density
One-sided leaf area density within spherical crowns.
Definition CanopyGenerator.h:85
-
SphericalCrownsCanopyParameters::canopy_configuration
std::string canopy_configuration
Specifies whether to use a uniformly spaced canopy (canopy_configuration="uniform") or a randomly arr...
Definition CanopyGenerator.h:91
-
SphericalCrownsCanopyParameters::canopy_origin
helios::vec3 canopy_origin
Cartesian (x,y,z) coordinate of the bottom center point of the canopy (i.e., specifying z=0 places th...
Definition CanopyGenerator.h:100
-
SplitGrapevineParameters
Parameters defining the grapevine canopy with a split (quad) trellis.
Definition CanopyGenerator.h:241
-
SplitGrapevineParameters::row_spacing
float row_spacing
Spacing between plant rows.
Definition CanopyGenerator.h:265
-
SplitGrapevineParameters::wood_subdivisions
int wood_subdivisions
Number of radial subdivisions for trunk/cordon/shoot tubes.
Definition CanopyGenerator.h:259
-
SplitGrapevineParameters::shoot_angle_base
float shoot_angle_base
Average angle of the shoot at the base (shoot_angle_base=0 points shoots upward; shoot_angle_base=M_P...
Definition CanopyGenerator.h:292
-
SplitGrapevineParameters::grape_radius
float grape_radius
Radius of grape berries.
Definition CanopyGenerator.h:310
-
SplitGrapevineParameters::canopy_rotation
float canopy_rotation
Azimuthal rotation of the canopy about the canopy origin. Note that if canopy_rotation is not equal t...
Definition CanopyGenerator.h:307
-
SplitGrapevineParameters::cluster_height_max
float cluster_height_max
Maximum height of grape clusters along the shoot as a fraction of the total shoot length.
Definition CanopyGenerator.h:316
-
SplitGrapevineParameters::leaf_spacing_fraction
float leaf_spacing_fraction
Spacing between adjacent leaves as a fraction of the local leaf width. E.g., leaf_spacing_fraction = ...
Definition CanopyGenerator.h:298
-
SplitGrapevineParameters::SplitGrapevineParameters
SplitGrapevineParameters()
Default constructor.
Definition CanopyGenerator.cpp:147
-
SplitGrapevineParameters::leaf_texture_file
std::string leaf_texture_file
Path to texture map file for leaves.
Definition CanopyGenerator.h:253
-
SplitGrapevineParameters::shoot_radius
float shoot_radius
Radius of shoot branches.
Definition CanopyGenerator.h:286
-
SplitGrapevineParameters::cordon_spacing
float cordon_spacing
Spacing between two opposite cordons.
Definition CanopyGenerator.h:280
-
SplitGrapevineParameters::plant_spacing
float plant_spacing
Spacing between adjacent plants along the row direction.
Definition CanopyGenerator.h:262
-
SplitGrapevineParameters::cluster_radius
float cluster_radius
Maximum horizontal radius of grape clusters.
Definition CanopyGenerator.h:313
-
SplitGrapevineParameters::grape_color
helios::RGBcolor grape_color
Color of grapes.
Definition CanopyGenerator.h:319
-
SplitGrapevineParameters::cordon_height
float cordon_height
Distance between the ground and cordon. Note - must be greater than or equal to the trunk height.
Definition CanopyGenerator.h:274
-
SplitGrapevineParameters::shoot_length
float shoot_length
Length of shoots.
Definition CanopyGenerator.h:283
-
SplitGrapevineParameters::leaf_width
float leaf_width
Maximum width of leaves. Leaf width increases logarithmically from the shoot tip, so leaf_width is th...
Definition CanopyGenerator.h:247
-
SplitGrapevineParameters::trunk_height
float trunk_height
Distance between the ground and top of trunks.
Definition CanopyGenerator.h:268
-
SplitGrapevineParameters::wood_texture_file
std::string wood_texture_file
Path to texture map file for trunks/branches.
Definition CanopyGenerator.h:256
-
SplitGrapevineParameters::grape_subdivisions
uint grape_subdivisions
Number of azimuthal and zenithal subdivisions making up berries (will result in roughly grape_subdivi...
Definition CanopyGenerator.h:322
-
SplitGrapevineParameters::trunk_radius
float trunk_radius
Radius of the trunk at the widest point.
Definition CanopyGenerator.h:271
-
SplitGrapevineParameters::plant_count
helios::int2 plant_count
Number of crowns/plants in the x- and y-directions.
Definition CanopyGenerator.h:301
-
SplitGrapevineParameters::shoots_per_cordon
uint shoots_per_cordon
Number of shoots on each cordon.
Definition CanopyGenerator.h:289
-
SplitGrapevineParameters::canopy_origin
helios::vec3 canopy_origin
Cartesian (x,y,z) coordinate of the bottom center point of the canopy (i.e., specifying z=0 places th...
Definition CanopyGenerator.h:304
-
SplitGrapevineParameters::shoot_angle_tip
float shoot_angle_tip
Average angle of the shoot at the tip (shoot_angle=0 is a completely vertical shoot; shoot_angle=M_PI...
Definition CanopyGenerator.h:295
-
SplitGrapevineParameters::leaf_subdivisions
helios::int2 leaf_subdivisions
Number of sub-division segments per leaf.
Definition CanopyGenerator.h:250
-
SplitGrapevineParameters::cordon_radius
float cordon_radius
Radius of cordon branches.
Definition CanopyGenerator.h:277
-
StrawberryParameters
Parameters defining the strawberry plant canopy.
Definition CanopyGenerator.h:606
-
StrawberryParameters::stem_subdivisions
int stem_subdivisions
Number of radial subdivisions for stem tubes.
Definition CanopyGenerator.h:624
-
StrawberryParameters::canopy_origin
helios::vec3 canopy_origin
Cartesian (x,y,z) coordinate of the bottom center point of the canopy (i.e., specifying z=0 places th...
Definition CanopyGenerator.h:645
-
StrawberryParameters::stems_per_plant
int stems_per_plant
Number of stems per plant.
Definition CanopyGenerator.h:627
-
StrawberryParameters::canopy_rotation
float canopy_rotation
Azimuthal rotation of the canopy about the canopy origin. Note that if canopy_rotation is not equal t...
Definition CanopyGenerator.h:648
-
StrawberryParameters::fruit_radius
float fruit_radius
Radius of strawberry fruit.
Definition CanopyGenerator.h:651
-
StrawberryParameters::plant_spacing
float plant_spacing
Spacing between adjacent plants along the row direction.
Definition CanopyGenerator.h:633
-
StrawberryParameters::StrawberryParameters
StrawberryParameters()
Default constructor.
Definition CanopyGenerator.cpp:377
-
StrawberryParameters::fruit_subdivisions
uint fruit_subdivisions
Number of azimuthal and zenithal subdivisions making up fruit (will result in roughly fruit_subdivisi...
Definition CanopyGenerator.h:657
-
StrawberryParameters::plant_count
helios::int2 plant_count
Number of crowns/plants in the x- and y-directions.
Definition CanopyGenerator.h:642
-
StrawberryParameters::plant_height
float plant_height
Height of the plant.
Definition CanopyGenerator.h:639
-
StrawberryParameters::leaf_subdivisions
helios::int2 leaf_subdivisions
Number of sub-division segments per leaf.
Definition CanopyGenerator.h:615
-
StrawberryParameters::fruit_texture_file
std::string fruit_texture_file
Texture map for strawberry fruit.
Definition CanopyGenerator.h:654
-
StrawberryParameters::clusters_per_stem
float clusters_per_stem
Number of strawberry clusters per plant stem. Clusters randomly have 1, 2, or 3 berries.
Definition CanopyGenerator.h:660
-
StrawberryParameters::stem_radius
float stem_radius
Radius of stems.
Definition CanopyGenerator.h:630
-
StrawberryParameters::leaf_texture_file
std::string leaf_texture_file
Path to texture map file for leaves.
Definition CanopyGenerator.h:618
-
StrawberryParameters::row_spacing
float row_spacing
Spacing between plant rows.
Definition CanopyGenerator.h:636
-
StrawberryParameters::stem_color
helios::RGBcolor stem_color
Color of stems.
Definition CanopyGenerator.h:621
-
StrawberryParameters::leaf_length
float leaf_length
Maximum width of leaves.
Definition CanopyGenerator.h:612
-
TomatoParameters
Parameters defining the tomato plant canopy.
Definition CanopyGenerator.h:556
-
TomatoParameters::shoot_subdivisions
int shoot_subdivisions
Number of radial subdivisions for shoot tubes.
Definition CanopyGenerator.h:574
-
TomatoParameters::leaf_length
float leaf_length
Maximum width of leaves.
Definition CanopyGenerator.h:562
-
TomatoParameters::fruit_color
helios::RGBcolor fruit_color
Color of tomato fruit.
Definition CanopyGenerator.h:598
-
TomatoParameters::leaf_subdivisions
helios::int2 leaf_subdivisions
Number of sub-division segments per leaf.
Definition CanopyGenerator.h:565
-
TomatoParameters::plant_count
helios::int2 plant_count
Number of crowns/plants in the x- and y-directions.
Definition CanopyGenerator.h:586
-
TomatoParameters::fruit_subdivisions
uint fruit_subdivisions
Number of azimuthal and zenithal subdivisions making up fruit (will result in roughly fruit_subdivisi...
Definition CanopyGenerator.h:601
-
TomatoParameters::canopy_rotation
float canopy_rotation
Azimuthal rotation of the canopy about the canopy origin. Note that if canopy_rotation is not equal t...
Definition CanopyGenerator.h:592
-
TomatoParameters::shoot_color
helios::RGBcolor shoot_color
Color of shoots.
Definition CanopyGenerator.h:571
-
TomatoParameters::row_spacing
float row_spacing
Spacing between plant rows.
Definition CanopyGenerator.h:580
-
TomatoParameters::plant_spacing
float plant_spacing
Spacing between adjacent plants along the row direction.
Definition CanopyGenerator.h:577
-
TomatoParameters::canopy_origin
helios::vec3 canopy_origin
Cartesian (x,y,z) coordinate of the bottom center point of the canopy (i.e., specifying z=0 places th...
Definition CanopyGenerator.h:589
-
TomatoParameters::TomatoParameters
TomatoParameters()
Default constructor.
Definition CanopyGenerator.cpp:345
-
TomatoParameters::leaf_texture_file
std::string leaf_texture_file
Path to texture map file for leaves.
Definition CanopyGenerator.h:568
-
TomatoParameters::plant_height
float plant_height
Height of the plant.
Definition CanopyGenerator.h:583
-
TomatoParameters::fruit_radius
float fruit_radius
Radius of tomato fruit.
Definition CanopyGenerator.h:595
-
UnilateralGrapevineParameters
Parameters defining the grapevine canopy with unilateral trellis.
Definition CanopyGenerator.h:330
-
UnilateralGrapevineParameters::leaf_spacing_fraction
float leaf_spacing_fraction
Spacing between adjacent leaves as a fraction of the local leaf width. E.g., leaf_spacing_fraction = ...
Definition CanopyGenerator.h:378
-
UnilateralGrapevineParameters::UnilateralGrapevineParameters
UnilateralGrapevineParameters()
Default constructor.
Definition CanopyGenerator.cpp:203
-
UnilateralGrapevineParameters::trunk_height
float trunk_height
Distance between the ground and top of trunks.
Definition CanopyGenerator.h:357
-
UnilateralGrapevineParameters::trunk_radius
float trunk_radius
Radius of the trunk at the widest point.
Definition CanopyGenerator.h:360
-
UnilateralGrapevineParameters::cluster_radius
float cluster_radius
Maximum horizontal radius of grape clusters.
Definition CanopyGenerator.h:393
-
UnilateralGrapevineParameters::shoot_length
float shoot_length
Length of shoots.
Definition CanopyGenerator.h:369
-
UnilateralGrapevineParameters::plant_spacing
float plant_spacing
Spacing between adjacent plants along the row direction.
Definition CanopyGenerator.h:351
-
UnilateralGrapevineParameters::grape_radius
float grape_radius
Radius of grape berries.
Definition CanopyGenerator.h:390
-
UnilateralGrapevineParameters::wood_subdivisions
int wood_subdivisions
Number of radial subdivisions for trunk/cordon/shoot tubes.
Definition CanopyGenerator.h:348
-
UnilateralGrapevineParameters::row_spacing
float row_spacing
Spacing between plant rows.
Definition CanopyGenerator.h:354
-
UnilateralGrapevineParameters::plant_count
helios::int2 plant_count
Number of crowns/plants in the x- and y-directions.
Definition CanopyGenerator.h:381
-
UnilateralGrapevineParameters::cordon_height
float cordon_height
Distance between the ground and cordon. Note - must be greater than or equal to the trunk height.
Definition CanopyGenerator.h:363
-
UnilateralGrapevineParameters::canopy_origin
helios::vec3 canopy_origin
Cartesian (x,y,z) coordinate of the bottom center point of the canopy (i.e., specifying z=0 places th...
Definition CanopyGenerator.h:384
-
UnilateralGrapevineParameters::leaf_width
float leaf_width
Maximum width of leaves. Leaf width increases logarithmically from the shoot tip, so leaf_width is th...
Definition CanopyGenerator.h:336
-
UnilateralGrapevineParameters::cluster_height_max
float cluster_height_max
Maximum height of grape clusters along the shoot as a fraction of the total shoot length.
Definition CanopyGenerator.h:396
-
UnilateralGrapevineParameters::shoot_radius
float shoot_radius
Radius of shoot branches.
Definition CanopyGenerator.h:372
-
UnilateralGrapevineParameters::leaf_subdivisions
helios::int2 leaf_subdivisions
Number of sub-division segments per leaf.
Definition CanopyGenerator.h:339
-
UnilateralGrapevineParameters::grape_color
helios::RGBcolor grape_color
Color of grapes.
Definition CanopyGenerator.h:399
-
UnilateralGrapevineParameters::leaf_texture_file
std::string leaf_texture_file
Path to texture map file for leaves.
Definition CanopyGenerator.h:342
-
UnilateralGrapevineParameters::shoots_per_cordon
uint shoots_per_cordon
Number of shoots on each cordon.
Definition CanopyGenerator.h:375
-
UnilateralGrapevineParameters::grape_subdivisions
uint grape_subdivisions
Number of azimuthal and zenithal subdivisions making up berries (will result in roughly grape_subdivi...
Definition CanopyGenerator.h:402
-
UnilateralGrapevineParameters::canopy_rotation
float canopy_rotation
Azimuthal rotation of the canopy about the canopy origin. Note that if canopy_rotation is not equal t...
Definition CanopyGenerator.h:387
-
UnilateralGrapevineParameters::wood_texture_file
std::string wood_texture_file
Path to texture map file for trunks/branches.
Definition CanopyGenerator.h:345
-
UnilateralGrapevineParameters::cordon_radius
float cordon_radius
Radius of cordon branches.
Definition CanopyGenerator.h:366
-
VSPGrapevineParameters
Parameters defining the grapevine canopy with vertical shoot positioned (VSP) trellis.
Definition CanopyGenerator.h:161
-
VSPGrapevineParameters::leaf_spacing_fraction
float leaf_spacing_fraction
Spacing between adjacent leaves as a fraction of the local leaf width. E.g., leaf_spacing_fraction = ...
Definition CanopyGenerator.h:209
-
VSPGrapevineParameters::wood_subdivisions
int wood_subdivisions
Number of radial subdivisions for trunk/cordon/shoot tubes.
Definition CanopyGenerator.h:179
-
VSPGrapevineParameters::cordon_height
float cordon_height
Distance between the ground and cordon. Note - must be greater than or equal to the trunk height.
Definition CanopyGenerator.h:194
-
VSPGrapevineParameters::trunk_height
float trunk_height
Distance between the ground and top of trunks.
Definition CanopyGenerator.h:188
-
VSPGrapevineParameters::cluster_height_max
float cluster_height_max
Maximum height of grape clusters along the shoot as a fraction of the total shoot length.
Definition CanopyGenerator.h:227
-
VSPGrapevineParameters::row_spacing
float row_spacing
Spacing between plant rows.
Definition CanopyGenerator.h:185
-
VSPGrapevineParameters::canopy_rotation
float canopy_rotation
Azimuthal rotation of the canopy about the canopy origin. Note that if canopy_rotation is not equal t...
Definition CanopyGenerator.h:218
-
VSPGrapevineParameters::plant_spacing
float plant_spacing
Spacing between adjacent plants along the row direction.
Definition CanopyGenerator.h:182
-
VSPGrapevineParameters::wood_texture_file
std::string wood_texture_file
Path to texture map file for trunks/branches.
Definition CanopyGenerator.h:176
-
VSPGrapevineParameters::cluster_radius
float cluster_radius
Maximum horizontal radius of grape clusters.
Definition CanopyGenerator.h:224
-
VSPGrapevineParameters::plant_count
helios::int2 plant_count
Number of crowns/plants in the x- and y-directions.
Definition CanopyGenerator.h:212
-
VSPGrapevineParameters::leaf_width
float leaf_width
Maximum width of leaves. Leaf width increases logarithmically from the shoot tip, so leaf_width is th...
Definition CanopyGenerator.h:167
-
VSPGrapevineParameters::grape_color
helios::RGBcolor grape_color
Color of grapes.
Definition CanopyGenerator.h:230
-
VSPGrapevineParameters::leaf_subdivisions
helios::int2 leaf_subdivisions
Number of sub-division segments per leaf.
Definition CanopyGenerator.h:170
-
VSPGrapevineParameters::shoots_per_cordon
uint shoots_per_cordon
Number of shoots on each cordon.
Definition CanopyGenerator.h:206
-
VSPGrapevineParameters::grape_subdivisions
uint grape_subdivisions
Number of azimuthal and zenithal subdivisions making up berries (will result in roughly 2*(grape_subd...
Definition CanopyGenerator.h:233
-
VSPGrapevineParameters::grape_radius
float grape_radius
Radius of grape berries.
Definition CanopyGenerator.h:221
-
VSPGrapevineParameters::cordon_radius
float cordon_radius
Radius of cordon branches.
Definition CanopyGenerator.h:197
-
VSPGrapevineParameters::leaf_texture_file
std::string leaf_texture_file
Path to texture map file for leaves.
Definition CanopyGenerator.h:173
-
VSPGrapevineParameters::shoot_length
float shoot_length
Length of shoots.
Definition CanopyGenerator.h:200
-
VSPGrapevineParameters::trunk_radius
float trunk_radius
Radius of the trunk at the widest point.
Definition CanopyGenerator.h:191
-
VSPGrapevineParameters::shoot_radius
float shoot_radius
Radius of shoot branches.
Definition CanopyGenerator.h:203
-
VSPGrapevineParameters::VSPGrapevineParameters
VSPGrapevineParameters()
Default constructor.
Definition CanopyGenerator.cpp:97
-
VSPGrapevineParameters::canopy_origin
helios::vec3 canopy_origin
Cartesian (x,y,z) coordinate of the bottom center point of the canopy (i.e., specifying z=0 places th...
Definition CanopyGenerator.h:215
-
WalnutCanopyParameters
Parameters defining the walnut tree canopy.
Definition CanopyGenerator.h:665
-
WalnutCanopyParameters::plant_count
helios::int2 plant_count
Number of crowns/plants in the x- and y-directions.
Definition CanopyGenerator.h:711
-
WalnutCanopyParameters::wood_subdivisions
int wood_subdivisions
Number of radial subdivisions for branch tubes.
Definition CanopyGenerator.h:683
-
WalnutCanopyParameters::plant_spacing
float plant_spacing
Spacing between adjacent plants along the row direction.
Definition CanopyGenerator.h:696
-
WalnutCanopyParameters::WalnutCanopyParameters
WalnutCanopyParameters()
Default constructor.
Definition CanopyGenerator.cpp:415
-
WalnutCanopyParameters::fruit_texture_file
std::string fruit_texture_file
Texture map for walnut fruit.
Definition CanopyGenerator.h:705
-
WalnutCanopyParameters::leaf_subdivisions
helios::int2 leaf_subdivisions
Number of sub-division segments per leaf.
Definition CanopyGenerator.h:674
-
WalnutCanopyParameters::fruit_subdivisions
uint fruit_subdivisions
Number of azimuthal and zenithal subdivisions making up fruit (will result in roughly fruit_subdivisi...
Definition CanopyGenerator.h:708
-
WalnutCanopyParameters::trunk_radius
float trunk_radius
Radius of trunk.
Definition CanopyGenerator.h:686
-
WalnutCanopyParameters::fruit_radius
float fruit_radius
Radius of walnuts.
Definition CanopyGenerator.h:702
-
WalnutCanopyParameters::canopy_rotation
float canopy_rotation
Azimuthal rotation of the canopy about the canopy origin. Note that if canopy_rotation is not equal t...
Definition CanopyGenerator.h:717
-
WalnutCanopyParameters::canopy_origin
helios::vec3 canopy_origin
Cartesian (x,y,z) coordinate of the bottom center point of the canopy (i.e., specifying z=0 places th...
Definition CanopyGenerator.h:714
-
WalnutCanopyParameters::leaf_texture_file
std::string leaf_texture_file
Path to texture map file for leaves.
Definition CanopyGenerator.h:677
-
WalnutCanopyParameters::leaf_length
float leaf_length
Maximum length of leaves along midrib.
Definition CanopyGenerator.h:671
-
WalnutCanopyParameters::wood_texture_file
std::string wood_texture_file
Path to texture map file for wood/branches.
Definition CanopyGenerator.h:680
-
WalnutCanopyParameters::branch_length
helios::vec3 branch_length
Average length of branches in each recursive branch level. For example, the first (....
Definition CanopyGenerator.h:692
-
WalnutCanopyParameters::trunk_height
float trunk_height
Height of the trunk.
Definition CanopyGenerator.h:689
-
WalnutCanopyParameters::row_spacing
float row_spacing
Spacing between plant rows.
Definition CanopyGenerator.h:699
-
WhiteSpruceCanopyParameters
Parameters defining the white spruce.
Definition CanopyGenerator.h:491
-
WhiteSpruceCanopyParameters::needle_width
float needle_width
Width of needles.
Definition CanopyGenerator.h:497
-
WhiteSpruceCanopyParameters::needle_subdivisions
helios::int2 needle_subdivisions
Number of sub-division segments per needle.
Definition CanopyGenerator.h:503
-
WhiteSpruceCanopyParameters::wood_texture_file
std::string wood_texture_file
Path to texture map file for trunks/branches.
Definition CanopyGenerator.h:509
-
WhiteSpruceCanopyParameters::plant_spacing
helios::vec2 plant_spacing
Spacing between adjacent crowns in the x- and y-directions. Note that if canopy_configuration='random...
Definition CanopyGenerator.h:542
-
WhiteSpruceCanopyParameters::needle_length
float needle_length
Length of needles.
Definition CanopyGenerator.h:500
-
WhiteSpruceCanopyParameters::trunk_height
float trunk_height
Distance between the ground and top of trunks.
Definition CanopyGenerator.h:515
-
WhiteSpruceCanopyParameters::level_spacing
float level_spacing
Vertical spacing between branching levels.
Definition CanopyGenerator.h:530
-
WhiteSpruceCanopyParameters::shoot_radius
float shoot_radius
Radius of shoot branches.
Definition CanopyGenerator.h:527
-
WhiteSpruceCanopyParameters::wood_subdivisions
int wood_subdivisions
Number of radial subdivisions for trunk/cordon/shoot tubes.
Definition CanopyGenerator.h:512
-
WhiteSpruceCanopyParameters::canopy_rotation
float canopy_rotation
Azimuthal rotation of the canopy about the canopy origin. Note that if canopy_rotation is not equal t...
Definition CanopyGenerator.h:551
-
WhiteSpruceCanopyParameters::shoot_angle
float shoot_angle
Maximum shoot angle.
Definition CanopyGenerator.h:536
-
WhiteSpruceCanopyParameters::plant_count
helios::int2 plant_count
Number of crowns/plants in the x- and y-directions.
Definition CanopyGenerator.h:545
-
WhiteSpruceCanopyParameters::base_height
float base_height
Height at which branches start.
Definition CanopyGenerator.h:521
-
WhiteSpruceCanopyParameters::crown_radius
float crown_radius
Radius of the crown at the base.
Definition CanopyGenerator.h:524
-
WhiteSpruceCanopyParameters::needle_color
helios::RGBcolor needle_color
Color of needles.
Definition CanopyGenerator.h:506
-
WhiteSpruceCanopyParameters::trunk_radius
float trunk_radius
Radius of the trunk at the base.
Definition CanopyGenerator.h:518
-
WhiteSpruceCanopyParameters::WhiteSpruceCanopyParameters
WhiteSpruceCanopyParameters()
Default constructor.
Definition CanopyGenerator.cpp:303
-
WhiteSpruceCanopyParameters::canopy_origin
helios::vec3 canopy_origin
Cartesian (x,y,z) coordinate of the bottom center point of the canopy (i.e., specifying z=0 places th...
Definition CanopyGenerator.h:548
-
WhiteSpruceCanopyParameters::branches_per_level
int branches_per_level
Number of primary branches on the bottom level.
Definition CanopyGenerator.h:533
-
WhiteSpruceCanopyParameters::canopy_configuration
std::string canopy_configuration
Specifies whether to use a uniformly spaced canopy (canopy_configuration="uniform") or a randomly arr...
Definition CanopyGenerator.h:539
-
helios::RGBAcolor
R-G-B-A color vector.
Definition helios_vector_types.h:1021
-
helios::RGBAcolor::r
float r
Red color component.
Definition helios_vector_types.h:1026
-
helios::RGBAcolor::a
float a
Alpha (transparency) component.
Definition helios_vector_types.h:1035
-
helios::RGBAcolor::b
float b
Blue color component.
Definition helios_vector_types.h:1032
-
helios::RGBAcolor::g
float g
Green color component.
Definition helios_vector_types.h:1029
-
helios::SphericalCoord
Vector of spherical coordinates (elevation,azimuth)
Definition helios_vector_types.h:1468
-
helios::SphericalCoord::elevation
const float & elevation
Elevation angle (radians)
Definition helios_vector_types.h:1482
-
helios::SphericalCoord::azimuth
float azimuth
Azimuthal angle (radians)
Definition helios_vector_types.h:1489
+
helios::make_vec2
vec2 make_vec2(float x, float y)
Make a vec2 from two floats.
Definition helios_vector_types.h:433
+
helios::make_RGBcolor
RGBcolor make_RGBcolor(float r, float g, float b)
Make an RGBcolor vector.
Definition helios_vector_types.h:954
+
helios::make_vec3
vec3 make_vec3(float x, float y, float z)
Make a vec3 from three floats.
Definition helios_vector_types.h:589
+
helios::make_SphericalCoord
SphericalCoord make_SphericalCoord(float elevation_radians, float azimuth_radians)
Make a SphericalCoord by specifying elevation and azimuth.
Definition helios_vector_types.h:1539
+
BaseCanopyParameters
Base struct class for Canopy parameters.
Definition CanopyGenerator.h:25
+
BaseCanopyParameters::canopy_origin
helios::vec3 canopy_origin
Cartesian (x,y,z) coordinate of the bottom center point of the canopy (i.e., specifying z=0 places th...
Definition CanopyGenerator.h:50
+
BaseCanopyParameters::BaseCanopyParameters
BaseCanopyParameters()
Default constructor.
Definition CanopyGenerator.cpp:28
+
BaseCanopyParameters::readParametersFromXML
void readParametersFromXML(const pugi::xml_node canopy_node)
Sets canopy parameters from the given XML node.
Definition CanopyGenerator.cpp:37
+
BaseCanopyParameters::canopy_rotation
float canopy_rotation
Azimuthal rotation of the canopy about the canopy origin. Note that if canopy_rotation is not equal t...
Definition CanopyGenerator.h:53
+ +
BaseGrapeVineParameters::plant_spacing
float plant_spacing
Spacing between adjacent plants along the row direction.
Definition CanopyGenerator.h:284
+
BaseGrapeVineParameters::shoot_radius_spread
float shoot_radius_spread
Spread value for the shoot radius. With any new canopy or plant generation, the shoot radius would be...
Definition CanopyGenerator.h:326
+
BaseGrapeVineParameters::missing_plant_probability
float missing_plant_probability
Probability for a plant to be missing.
Definition CanopyGenerator.h:281
+
BaseGrapeVineParameters::dead_probability
float dead_probability
Probability for a plant to be dead, i.e. without any leaves or grapes.
Definition CanopyGenerator.h:275
+
BaseGrapeVineParameters::cluster_radius
float cluster_radius
Maximum horizontal radius of grape clusters.
Definition CanopyGenerator.h:347
+
BaseGrapeVineParameters::readParametersFromXML
void readParametersFromXML(const pugi::xml_node canopy_node)
Sets canopy parameters from the given XML node.
Definition CanopyGenerator.cpp:391
+
BaseGrapeVineParameters::cluster_height_max
float cluster_height_max
Maximum height of grape clusters along the shoot as a fraction of the total shoot length.
Definition CanopyGenerator.h:352
+
BaseGrapeVineParameters::BaseGrapeVineParameters
BaseGrapeVineParameters()
Default constructor.
Definition CanopyGenerator.cpp:339
+
BaseGrapeVineParameters::leaf_texture_file
std::string leaf_texture_file
Path to texture map file for leaves.
Definition CanopyGenerator.h:264
+
BaseGrapeVineParameters::leaf_spacing_fraction_spread
float leaf_spacing_fraction_spread
Spread value for the leaf spacing fraction. With any new canopy or plant generation,...
Definition CanopyGenerator.h:336
+
BaseGrapeVineParameters::wood_subdivisions
int wood_subdivisions
Number of radial subdivisions for trunk/cordon/shoot tubes.
Definition CanopyGenerator.h:270
+
BaseGrapeVineParameters::row_spacing
float row_spacing
Spacing between plant rows.
Definition CanopyGenerator.h:289
+
BaseGrapeVineParameters::grape_subdivisions
uint grape_subdivisions
Number of azimuthal and zenithal subdivisions making up berries (will result in roughly 2*(grape_subd...
Definition CanopyGenerator.h:360
+
BaseGrapeVineParameters::plant_spacing_spread
float plant_spacing_spread
Spread value for the plant spacing. The spacing between adjacent plants along a row would vary betwee...
Definition CanopyGenerator.h:286
+
BaseGrapeVineParameters::shoot_length_spread
float shoot_length_spread
Spread value for the shoot length. With any new canopy or plant generation, the shoot length would be...
Definition CanopyGenerator.h:321
+
BaseGrapeVineParameters::leaf_spacing_fraction
float leaf_spacing_fraction
Spacing between adjacent leaves as a fraction of the local leaf width. E.g., leaf_spacing_fraction = ...
Definition CanopyGenerator.h:334
+
BaseGrapeVineParameters::trunk_height_spread
float trunk_height_spread
Spread value for the trunk height. With any new canopy or plant generation, the trunk height would be...
Definition CanopyGenerator.h:296
+
BaseGrapeVineParameters::shoots_per_cordon_spread
uint shoots_per_cordon_spread
Spread value for the number of shoots per cordon. With any new canopy or plant generation,...
Definition CanopyGenerator.h:331
+
BaseGrapeVineParameters::cordon_radius
float cordon_radius
Radius of cordon branches.
Definition CanopyGenerator.h:314
+
BaseGrapeVineParameters::trunk_radius_spread
float trunk_radius_spread
Spread value for the trunk radius. With any new canopy or plant generation, the trunk radius would be...
Definition CanopyGenerator.h:301
+
BaseGrapeVineParameters::buildPlant
void buildPlant(CanopyGenerator &canopy_generator, helios::vec3 origin) override
Makes the given Canopy generator build a single plant of our canopy type with our parameters at the g...
Definition CanopyGenerator.cpp:611
+
BaseGrapeVineParameters::leaf_width
float leaf_width
Maximum width of leaves. Leaf width increases logarithmically from the shoot tip, so leaf_width is th...
Definition CanopyGenerator.h:256
+
BaseGrapeVineParameters::cordon_height_spread
float cordon_height_spread
Spread value for the cordon height. With any new canopy or plant generation, the cordon height would ...
Definition CanopyGenerator.h:311
+
BaseGrapeVineParameters::canopy_rotation_spread
float canopy_rotation_spread
Spread value for the canopy rotation. With any new canopy or plant generation, the canopy/plant rotat...
Definition CanopyGenerator.h:368
+
BaseGrapeVineParameters::wood_subdivisions_spread
int wood_subdivisions_spread
Spread value for the number of wood subdivisions. With any new canopy or plant generation,...
Definition CanopyGenerator.h:272
+
BaseGrapeVineParameters::shoots_per_cordon
uint shoots_per_cordon
Number of shoots on each cordon.
Definition CanopyGenerator.h:329
+
BaseGrapeVineParameters::buildCanopy
void buildCanopy(CanopyGenerator &canopy_generator) override
Makes the given Canopy generator build a canopy of our type with our parameters.
Definition CanopyGenerator.cpp:615
+
BaseGrapeVineParameters::trunk_height
float trunk_height
Distance between the ground and top of trunks.
Definition CanopyGenerator.h:294
+
BaseGrapeVineParameters::leaf_subdivisions
helios::int2 leaf_subdivisions
Number of sub-division segments per leaf.
Definition CanopyGenerator.h:261
+
BaseGrapeVineParameters::shoot_length
float shoot_length
Length of shoots.
Definition CanopyGenerator.h:319
+
BaseGrapeVineParameters::cluster_height_max_spread
float cluster_height_max_spread
Spread value for the cluster height. With any new canopy or plant generation, the cluster height woul...
Definition CanopyGenerator.h:354
+
BaseGrapeVineParameters::grape_subdivisions_spread
uint grape_subdivisions_spread
Spread value for the number of grape subdivisions. With any new canopy or plant generation,...
Definition CanopyGenerator.h:362
+
BaseGrapeVineParameters::trunk_radius
float trunk_radius
Radius of the trunk at the widest point.
Definition CanopyGenerator.h:299
+
BaseGrapeVineParameters::shoot_radius
float shoot_radius
Radius of shoot branches.
Definition CanopyGenerator.h:324
+
BaseGrapeVineParameters::cordon_length
float cordon_length
Length of the cordons. By default, half the plant spacing.
Definition CanopyGenerator.h:304
+
BaseGrapeVineParameters::cluster_radius_spread
float cluster_radius_spread
Spread value for the cluster radius. With any new canopy or plant generation, the cluster radius woul...
Definition CanopyGenerator.h:349
+
BaseGrapeVineParameters::grape_color
helios::RGBcolor grape_color
Color of grapes.
Definition CanopyGenerator.h:357
+
BaseGrapeVineParameters::cordon_radius_spread
float cordon_radius_spread
Spread value for the cordon radius. With any new canopy or plant generation, the cordon radius would ...
Definition CanopyGenerator.h:316
+
BaseGrapeVineParameters::leaf_width_spread
float leaf_width_spread
Spread value for the maximum leaf width. With any new canopy or plant generation, the maximum leaf wi...
Definition CanopyGenerator.h:258
+
BaseGrapeVineParameters::grape_radius_spread
float grape_radius_spread
Spread value for the grape radius. With any new canopy or plant generation, the grape radius would be...
Definition CanopyGenerator.h:344
+
BaseGrapeVineParameters::plant_count
helios::int2 plant_count
Number of crowns/plants in the x- and y-directions.
Definition CanopyGenerator.h:339
+
BaseGrapeVineParameters::row_spacing_spread
float row_spacing_spread
Spread value for the row spacing. This allows to vary the alignment of plants along a row....
Definition CanopyGenerator.h:291
+
BaseGrapeVineParameters::cordon_height
float cordon_height
Distance between the ground and cordon. Note - must be greater than or equal to the trunk height.
Definition CanopyGenerator.h:309
+
BaseGrapeVineParameters::wood_texture_file
std::string wood_texture_file
Path to texture map file for trunks/branches.
Definition CanopyGenerator.h:267
+
BaseGrapeVineParameters::grape_radius
float grape_radius
Radius of grape berries.
Definition CanopyGenerator.h:342
+
BaseGrapeVineParameters::cordon_length_spread
float cordon_length_spread
Spread value for the cordon length. With any new canopy or plant generation, the cordon length would ...
Definition CanopyGenerator.h:306
+
BeanParameters
Parameters defining the bean plant canopy.
Definition CanopyGenerator.h:983
+
BeanParameters::plant_spacing
float plant_spacing
Spacing between adjacent plants along the row direction.
Definition CanopyGenerator.h:1030
+
BeanParameters::leaflet_length
float leaflet_length
Length of the leaflet from base to tip leaf.
Definition CanopyGenerator.h:1027
+
BeanParameters::pod_length
float pod_length
Length of bean pods.
Definition CanopyGenerator.h:1042
+
BeanParameters::leaf_length
float leaf_length
Maximum width of leaves.
Definition CanopyGenerator.h:1006
+
BeanParameters::BeanParameters
BeanParameters()
Default constructor.
Definition CanopyGenerator.cpp:1767
+
BeanParameters::shoot_subdivisions
int shoot_subdivisions
Number of radial subdivisions for shoot tubes.
Definition CanopyGenerator.h:1018
+
BeanParameters::pod_color
helios::RGBcolor pod_color
Color of bean pods.
Definition CanopyGenerator.h:1045
+
BeanParameters::leaf_subdivisions
helios::int2 leaf_subdivisions
Number of sub-division segments per leaf.
Definition CanopyGenerator.h:1009
+
BeanParameters::stem_length
float stem_length
Length of stems before splitting to leaflets.
Definition CanopyGenerator.h:1024
+
BeanParameters::pod_subdivisions
uint pod_subdivisions
Number of lengthwise subdivisions making up pods.
Definition CanopyGenerator.h:1048
+
BeanParameters::buildPlant
void buildPlant(CanopyGenerator &canopy_generator, helios::vec3 origin) override
Makes the given Canopy generator build a single plant of our canopy type with our parameters at the g...
Definition CanopyGenerator.cpp:1884
+
BeanParameters::stem_radius
float stem_radius
Radius of main stem at base.
Definition CanopyGenerator.h:1021
+
BeanParameters::germination_probability
float germination_probability
Probability that a plant in the canopy germinated.
Definition CanopyGenerator.h:1039
+
BeanParameters::leaf_texture_file
std::string leaf_texture_file
Path to texture map file for leaves.
Definition CanopyGenerator.h:1012
+
BeanParameters::buildCanopy
void buildCanopy(CanopyGenerator &canopy_generator) override
Makes the given Canopy generator build a canopy of our type with our parameters.
Definition CanopyGenerator.cpp:1888
+
BeanParameters::readParametersFromXML
void readParametersFromXML(const pugi::xml_node canopy_node)
Sets canopy parameters from the given XML node.
Definition CanopyGenerator.cpp:1805
+
BeanParameters::shoot_color
helios::RGBcolor shoot_color
Color of shoots.
Definition CanopyGenerator.h:1015
+
BeanParameters::row_spacing
float row_spacing
Spacing between plant rows.
Definition CanopyGenerator.h:1033
+
BeanParameters::plant_count
helios::int2 plant_count
Number of crowns/plants in the x- and y-directions.
Definition CanopyGenerator.h:1036
+
ConicalCrownsCanopyParameters
Parameters defining the canopy with conical crowns.
Definition CanopyGenerator.h:171
+
ConicalCrownsCanopyParameters::plant_count
helios::int2 plant_count
Number of crowns/plants in the x- and y-directions.
Definition CanopyGenerator.h:224
+
ConicalCrownsCanopyParameters::leaf_angle_distribution
std::string leaf_angle_distribution
Leaf angle distribution - one of "spherical", "uniform", "erectophile", "planophile",...
Definition CanopyGenerator.h:206
+
ConicalCrownsCanopyParameters::ConicalCrownsCanopyParameters
ConicalCrownsCanopyParameters()
Default constructor.
Definition CanopyGenerator.cpp:233
+
ConicalCrownsCanopyParameters::leaf_subdivisions
helios::int2 leaf_subdivisions
Number of sub-division segments per leaf.
Definition CanopyGenerator.h:197
+
ConicalCrownsCanopyParameters::leaf_color
helios::RGBcolor leaf_color
Leaf color if no texture map file is provided.
Definition CanopyGenerator.h:203
+
ConicalCrownsCanopyParameters::leaf_texture_file
std::string leaf_texture_file
Path to texture map file for leaves. If left empty, no texture will be used.
Definition CanopyGenerator.h:200
+
ConicalCrownsCanopyParameters::crown_height
float crown_height
Height of the conical crowns.
Definition CanopyGenerator.h:215
+
ConicalCrownsCanopyParameters::plant_spacing
helios::vec2 plant_spacing
Spacing between adjacent crowns in the x- and y-directions. Note that if canopy_configuration='random...
Definition CanopyGenerator.h:221
+
ConicalCrownsCanopyParameters::buildCanopy
void buildCanopy(CanopyGenerator &canopy_generator) override
Makes the given Canopy generator build a canopy of our type with our parameters.
Definition CanopyGenerator.cpp:335
+
ConicalCrownsCanopyParameters::canopy_configuration
std::string canopy_configuration
Specifies whether to use a uniformly spaced canopy (canopy_configuration="uniform") or a randomly arr...
Definition CanopyGenerator.h:218
+
ConicalCrownsCanopyParameters::leaf_size
helios::vec2 leaf_size
Length of leaf in x- and y- directions (prior to rotation)
Definition CanopyGenerator.h:194
+
ConicalCrownsCanopyParameters::crown_radius
float crown_radius
Radius of the conical crowns at the base.
Definition CanopyGenerator.h:212
+
ConicalCrownsCanopyParameters::leaf_area_density
float leaf_area_density
One-sided leaf area density within spherical crowns.
Definition CanopyGenerator.h:209
+
ConicalCrownsCanopyParameters::buildPlant
void buildPlant(CanopyGenerator &canopy_generator, helios::vec3 origin) override
Makes the given Canopy generator build a single plant of our canopy type with our parameters at the g...
Definition CanopyGenerator.cpp:331
+
ConicalCrownsCanopyParameters::readParametersFromXML
void readParametersFromXML(const pugi::xml_node canopy_node)
Sets canopy parameters from the given XML node.
Definition CanopyGenerator.cpp:261
+
GobletGrapevineParameters
Parameters defining the grapevine canopy with goblet (vent a taille) trellis.
Definition CanopyGenerator.h:464
+
GobletGrapevineParameters::GobletGrapevineParameters
GobletGrapevineParameters()
Default constructor.
Definition CanopyGenerator.cpp:793
+
GobletGrapevineParameters::buildPlant
void buildPlant(CanopyGenerator &canopy_generator, helios::vec3 origin) override
Makes the given Canopy generator build a single plant of our canopy type with our parameters at the g...
Definition CanopyGenerator.cpp:833
+
GobletGrapevineParameters::buildCanopy
void buildCanopy(CanopyGenerator &canopy_generator) override
Makes the given Canopy generator build a canopy of our type with our parameters.
Definition CanopyGenerator.cpp:837
+
GobletGrapevineParameters::readParametersFromXML
void readParametersFromXML(const pugi::xml_node canopy_node)
Sets canopy parameters from the given XML node.
Definition CanopyGenerator.cpp:829
+
HomogeneousCanopyParameters
Parameters defining the homogeneous canopy.
Definition CanopyGenerator.h:58
+
HomogeneousCanopyParameters::readParametersFromXML
void readParametersFromXML(const pugi::xml_node canopy_node)
Sets canopy parameters from the given XML node.
Definition CanopyGenerator.cpp:75
+
HomogeneousCanopyParameters::buffer
std::string buffer
String specifying whether leaves should be placed so that leaf edges do not fall outside the specifie...
Definition CanopyGenerator.h:108
+
HomogeneousCanopyParameters::leaf_size
helios::vec2 leaf_size
Length of leaf in x- and y- directions (prior to rotation)
Definition CanopyGenerator.h:81
+
HomogeneousCanopyParameters::leaf_color
helios::RGBcolor leaf_color
Leaf color if no texture map file is provided.
Definition CanopyGenerator.h:90
+
HomogeneousCanopyParameters::buildPlant
void buildPlant(CanopyGenerator &canopy_generator, helios::vec3 origin) override
Makes the given Canopy generator build a single plant of our canopy type with our parameters at the g...
Definition CanopyGenerator.cpp:127
+
HomogeneousCanopyParameters::buildCanopy
void buildCanopy(CanopyGenerator &canopy_generator) override
Makes the given Canopy generator build a canopy of our type with our parameters.
Definition CanopyGenerator.cpp:131
+
HomogeneousCanopyParameters::canopy_extent
helios::vec2 canopy_extent
Horizontal extent of the canopy in the x- and y-directions.
Definition CanopyGenerator.h:102
+
HomogeneousCanopyParameters::leaf_subdivisions
helios::int2 leaf_subdivisions
Number of sub-division segments per leaf.
Definition CanopyGenerator.h:84
+
HomogeneousCanopyParameters::canopy_height
float canopy_height
Height of the canopy.
Definition CanopyGenerator.h:99
+
HomogeneousCanopyParameters::leaf_angle_distribution
std::string leaf_angle_distribution
Leaf angle distribution - one of "spherical", "uniform", "erectophile", "planophile",...
Definition CanopyGenerator.h:93
+
HomogeneousCanopyParameters::HomogeneousCanopyParameters
HomogeneousCanopyParameters()
Default constructor.
Definition CanopyGenerator.cpp:51
+
HomogeneousCanopyParameters::leaf_texture_file
std::string leaf_texture_file
Path to texture map file for leaves. If left empty, no texture will be used.
Definition CanopyGenerator.h:87
+
HomogeneousCanopyParameters::leaf_area_index
float leaf_area_index
One-sided leaf area index of the canopy.
Definition CanopyGenerator.h:96
+
SorghumCanopyParameters
Parameters defining Sorghum plant canopy.
Definition CanopyGenerator.h:764
+
SorghumCanopyParameters::s5_stem_subdivisions
int s5_stem_subdivisions
Number of stem radial subdivisions for stage 5.
Definition CanopyGenerator.h:944
+
SorghumCanopyParameters::s2_stem_subdivisions
float s2_stem_subdivisions
Number of stem radial subdivisions for stage 2.
Definition CanopyGenerator.h:833
+
SorghumCanopyParameters::s1_leaf1_angle
float s1_leaf1_angle
Leaf1 vertical angle of rotation for stage 1.
Definition CanopyGenerator.h:810
+
SorghumCanopyParameters::s5_stem_length
float s5_stem_length
Length of the sorghum stem for stage 5.
Definition CanopyGenerator.h:935
+
SorghumCanopyParameters::s4_seed_texture_file
std::string s4_seed_texture_file
Texture map of the panicle for stage 4.
Definition CanopyGenerator.h:915
+
SorghumCanopyParameters::s5_number_of_leaves
int s5_number_of_leaves
Number of leaves for the sorghum plant, stage 5.
Definition CanopyGenerator.h:962
+
SorghumCanopyParameters::s5_mean_leaf_angle
float s5_mean_leaf_angle
Mean vertical angle of rotation of leaf for stage 5 in degrees; Standard deviation for the angle is 1...
Definition CanopyGenerator.h:965
+
SorghumCanopyParameters::buildPlant
void buildPlant(CanopyGenerator &canopy_generator, helios::vec3 origin) override
Makes the given Canopy generator build a single plant of our canopy type with our parameters at the g...
Definition CanopyGenerator.cpp:1759
+
SorghumCanopyParameters::s4_stem_length
float s4_stem_length
Length of the sorghum stem for stage 4.
Definition CanopyGenerator.h:900
+
SorghumCanopyParameters::s3_leaf_subdivisions
helios::int2 s3_leaf_subdivisions
Number of sub-division segments of leaf in the x- (length) and y- (width) direction for stage 3.
Definition CanopyGenerator.h:886
+
SorghumCanopyParameters::s1_leaf_texture_file
std::string s1_leaf_texture_file
Texture map for sorghum leaf1 for stage 1.
Definition CanopyGenerator.h:822
+
SorghumCanopyParameters::s1_leaf_size2
helios::vec2 s1_leaf_size2
Length of leaf2 in x- (length) and y- (width) directions (prior to rotation) for stage 1.
Definition CanopyGenerator.h:804
+
SorghumCanopyParameters::s4_stem_radius
float s4_stem_radius
Radius of the sorghum stem for stage 4.
Definition CanopyGenerator.h:903
+
SorghumCanopyParameters::s3_mean_leaf_angle
float s3_mean_leaf_angle
Mean vertical angle of rotation of leaf for stage 3 in degrees; Standard deviation for the leaves is ...
Definition CanopyGenerator.h:892
+
SorghumCanopyParameters::s4_stem_subdivisions
float s4_stem_subdivisions
Number of stem radial subdivisions for stage 4.
Definition CanopyGenerator.h:906
+
SorghumCanopyParameters::s2_leaf1_angle
float s2_leaf1_angle
Leaf1 vertical angle of rotation for stage 2.
Definition CanopyGenerator.h:851
+
SorghumCanopyParameters::s2_leaf_texture_file
std::string s2_leaf_texture_file
Texture map for sorghum leaf for stage 2.
Definition CanopyGenerator.h:869
+
SorghumCanopyParameters::s5_panicle_subdivisions
int s5_panicle_subdivisions
Number of panicle subdivisions for each grain sphere within a panicle, stage 5.
Definition CanopyGenerator.h:950
+
SorghumCanopyParameters::s2_leaf4_angle
float s2_leaf4_angle
Leaf4 vertical angle of rotation for stage 2.
Definition CanopyGenerator.h:860
+
SorghumCanopyParameters::s4_mean_leaf_angle
float s4_mean_leaf_angle
Mean vertical angle of rotation of leaf for stage 4 in degrees; Standard deviation for the angle is 5...
Definition CanopyGenerator.h:927
+
SorghumCanopyParameters::s2_leaf5_angle
float s2_leaf5_angle
Leaf5 vertical angle of rotation for stage 2.
Definition CanopyGenerator.h:863
+
SorghumCanopyParameters::s2_leaf_subdivisions
helios::int2 s2_leaf_subdivisions
Number of sub-division segments of leaf in the x- (length) and y- (width) direction for stage 2.
Definition CanopyGenerator.h:866
+
SorghumCanopyParameters::plant_spacing
float plant_spacing
Spacing between adjacent plants along the row direction.
Definition CanopyGenerator.h:972
+
SorghumCanopyParameters::s4_leaf_size
helios::vec2 s4_leaf_size
Length of leaf in x- (length) and y- (width) directions (prior to rotation) for stage 4.
Definition CanopyGenerator.h:918
+
SorghumCanopyParameters::s2_leaf3_angle
float s2_leaf3_angle
Leaf3 vertical angle of rotation for stage 2.
Definition CanopyGenerator.h:857
+
SorghumCanopyParameters::s4_leaf_subdivisions
helios::int2 s4_leaf_subdivisions
Number of sub-division segments of leaf in the x- (length) and y- (width) direction for stage 4.
Definition CanopyGenerator.h:921
+
SorghumCanopyParameters::s2_stem_radius
float s2_stem_radius
Radius of the sorghum stem for stage 2.
Definition CanopyGenerator.h:830
+
SorghumCanopyParameters::SorghumCanopyParameters
SorghumCanopyParameters()
Default constructor.
Definition CanopyGenerator.cpp:1309
+
SorghumCanopyParameters::s5_stem_bend
float s5_stem_bend
Bend of the stem from mid-section for stage 5. The distance from the mid-section of the stem to the i...
Definition CanopyGenerator.h:941
+
SorghumCanopyParameters::s1_leaf_size1
helios::vec2 s1_leaf_size1
Length of leaf1 in x- (length) and y- (width) directions (prior to rotation) for stage 1.
Definition CanopyGenerator.h:801
+
SorghumCanopyParameters::readParametersFromXML
void readParametersFromXML(const pugi::xml_node canopy_node)
Sets canopy parameters from the given XML node.
Definition CanopyGenerator.cpp:1445
+
SorghumCanopyParameters::s5_stem_radius
float s5_stem_radius
Radius of the sorghum stem for stage 5.
Definition CanopyGenerator.h:938
+
SorghumCanopyParameters::plant_count
helios::int2 plant_count
Number of crowns/plants in the x- and y-directions.
Definition CanopyGenerator.h:978
+
SorghumCanopyParameters::s3_stem_radius
float s3_stem_radius
Radius of the sorghum stem for stage 3.
Definition CanopyGenerator.h:877
+
SorghumCanopyParameters::s5_leaf_texture_file
std::string s5_leaf_texture_file
Texture map for sorghum leaf, stage 5.
Definition CanopyGenerator.h:968
+
SorghumCanopyParameters::s5_leaf_subdivisions
helios::int2 s5_leaf_subdivisions
Number of sub-division segments of leaf in the x- (length) and y- (width) direction for stage 5.
Definition CanopyGenerator.h:959
+
SorghumCanopyParameters::s1_leaf_size3
helios::vec2 s1_leaf_size3
Length of leaf3 in x- (length) and y- (width) directions (prior to rotation) for stage 1.
Definition CanopyGenerator.h:807
+
SorghumCanopyParameters::s4_number_of_leaves
int s4_number_of_leaves
Number of leaves for the sorghum plant, stage 4.
Definition CanopyGenerator.h:924
+
SorghumCanopyParameters::s4_panicle_subdivisions
int s4_panicle_subdivisions
Number of panicle subdivisions for each grain sphere within a panicle, stage 4.
Definition CanopyGenerator.h:912
+
SorghumCanopyParameters::s3_stem_length
float s3_stem_length
Length of the sorghum stem for stage 3.
Definition CanopyGenerator.h:874
+
SorghumCanopyParameters::s3_leaf_texture_file
std::string s3_leaf_texture_file
Texture map for sorghum leaf for stage 3.
Definition CanopyGenerator.h:895
+
SorghumCanopyParameters::s2_leaf_size3
helios::vec2 s2_leaf_size3
Length of leaf3 in x- (length) and y- (width) directions (prior to rotation) for stage 2.
Definition CanopyGenerator.h:842
+
SorghumCanopyParameters::s1_stem_radius
float s1_stem_radius
Radius of the sorghum stem for stage 1.
Definition CanopyGenerator.h:795
+
SorghumCanopyParameters::s5_panicle_size
helios::vec2 s5_panicle_size
Size of panicle in x- and y- directions for stage 5.
Definition CanopyGenerator.h:947
+
SorghumCanopyParameters::s3_number_of_leaves
int s3_number_of_leaves
Number of leaves along the stem for stage 3.
Definition CanopyGenerator.h:889
+
SorghumCanopyParameters::s2_leaf_size5
helios::vec2 s2_leaf_size5
Length of leaf5 in x- (length) and y- (width) directions (prior to rotation) for stage 2.
Definition CanopyGenerator.h:848
+
SorghumCanopyParameters::s5_leaf_size
helios::vec2 s5_leaf_size
Length of leaf in x- (length) and y- (width) directions (prior to rotation) for stage 5.
Definition CanopyGenerator.h:956
+
SorghumCanopyParameters::s1_stem_subdivisions
float s1_stem_subdivisions
Number of stem radial subdivisions for stage 1.
Definition CanopyGenerator.h:798
+
SorghumCanopyParameters::s2_leaf_size4
helios::vec2 s2_leaf_size4
Length of leaf4 in x- (length) and y- (width) directions (prior to rotation) for stage 2.
Definition CanopyGenerator.h:845
+
SorghumCanopyParameters::s1_leaf_subdivisions
helios::int2 s1_leaf_subdivisions
Number of sub-division segments of leaf in the x- (length) and y- (width) direction for stage 1.
Definition CanopyGenerator.h:819
+
SorghumCanopyParameters::s4_leaf_texture_file
std::string s4_leaf_texture_file
Texture map for sorghum leaf, stage 4.
Definition CanopyGenerator.h:930
+
SorghumCanopyParameters::s2_leaf_size2
helios::vec2 s2_leaf_size2
Length of leaf2 in x- (length) and y- (width) directions (prior to rotation) for stage 2.
Definition CanopyGenerator.h:839
+
SorghumCanopyParameters::row_spacing
float row_spacing
Spacing between plant rows.
Definition CanopyGenerator.h:975
+
SorghumCanopyParameters::s3_leaf_size
helios::vec2 s3_leaf_size
Length of leaf in x- (length) and y- (width) directions (prior to rotation) for stage 3.
Definition CanopyGenerator.h:883
+
SorghumCanopyParameters::s2_stem_length
float s2_stem_length
Length of the sorghum stem for stage 2.
Definition CanopyGenerator.h:827
+
SorghumCanopyParameters::s1_leaf2_angle
float s1_leaf2_angle
Leaf2 vertical angle of rotation for stage 1.
Definition CanopyGenerator.h:813
+
SorghumCanopyParameters::s3_stem_subdivisions
float s3_stem_subdivisions
Number of stem radial subdivisions for stage 3.
Definition CanopyGenerator.h:880
+
SorghumCanopyParameters::buildCanopy
void buildCanopy(CanopyGenerator &canopy_generator) override
Makes the given Canopy generator build a canopy of our type with our parameters.
Definition CanopyGenerator.cpp:1763
+
SorghumCanopyParameters::s1_stem_length
float s1_stem_length
Length of the sorghum stem for stage 1.
Definition CanopyGenerator.h:792
+
SorghumCanopyParameters::sorghum_stage
int sorghum_stage
Sorghum categorized into 5 stages; 1 - Three leaf stage, 2 - Five leaf stage, 3 - Panicle initiation ...
Definition CanopyGenerator.h:787
+
SorghumCanopyParameters::s1_leaf3_angle
float s1_leaf3_angle
Leaf3 vertical angle of rotation for stage 1.
Definition CanopyGenerator.h:816
+
SorghumCanopyParameters::s2_leaf_size1
helios::vec2 s2_leaf_size1
Length of leaf1 in x- (length) and y- (width) directions (prior to rotation) for stage 2.
Definition CanopyGenerator.h:836
+
SorghumCanopyParameters::s5_seed_texture_file
std::string s5_seed_texture_file
Texture map of the panicle for stage 5.
Definition CanopyGenerator.h:953
+
SorghumCanopyParameters::s4_panicle_size
helios::vec2 s4_panicle_size
Size of panicle in x- and y- directions for stage 4.
Definition CanopyGenerator.h:909
+
SorghumCanopyParameters::s2_leaf2_angle
float s2_leaf2_angle
Leaf2 vertical angle of rotation for stage 2.
Definition CanopyGenerator.h:854
+
SphericalCrownsCanopyParameters
Parameters defining the canopy with spherical crowns.
Definition CanopyGenerator.h:113
+
SphericalCrownsCanopyParameters::crown_radius
helios::vec3 crown_radius
Radius of the spherical crowns.
Definition CanopyGenerator.h:154
+
SphericalCrownsCanopyParameters::leaf_size
helios::vec2 leaf_size
Length of leaf in x- and y- directions (prior to rotation)
Definition CanopyGenerator.h:136
+
SphericalCrownsCanopyParameters::leaf_texture_file
std::string leaf_texture_file
Path to texture map file for leaves. If left empty, no texture will be used.
Definition CanopyGenerator.h:142
+
SphericalCrownsCanopyParameters::leaf_color
helios::RGBcolor leaf_color
Leaf color if no texture map file is provided.
Definition CanopyGenerator.h:145
+
SphericalCrownsCanopyParameters::plant_count
helios::int2 plant_count
Number of crowns/plants in the x- and y-directions.
Definition CanopyGenerator.h:163
+
SphericalCrownsCanopyParameters::plant_spacing
helios::vec2 plant_spacing
Spacing between adjacent crowns in the x- and y-directions. Note that if canopy_configuration='random...
Definition CanopyGenerator.h:160
+
SphericalCrownsCanopyParameters::SphericalCrownsCanopyParameters
SphericalCrownsCanopyParameters()
Default constructor.
Definition CanopyGenerator.cpp:135
+
SphericalCrownsCanopyParameters::leaf_subdivisions
helios::int2 leaf_subdivisions
Number of sub-division segments per leaf.
Definition CanopyGenerator.h:139
+
SphericalCrownsCanopyParameters::leaf_angle_distribution
std::string leaf_angle_distribution
Leaf angle distribution - one of "spherical", "uniform", "erectophile", "planophile",...
Definition CanopyGenerator.h:148
+
SphericalCrownsCanopyParameters::leaf_area_density
float leaf_area_density
One-sided leaf area density within spherical crowns.
Definition CanopyGenerator.h:151
+
SphericalCrownsCanopyParameters::canopy_configuration
std::string canopy_configuration
Specifies whether to use a uniformly spaced canopy (canopy_configuration="uniform") or a randomly arr...
Definition CanopyGenerator.h:157
+
SphericalCrownsCanopyParameters::readParametersFromXML
void readParametersFromXML(const pugi::xml_node canopy_node)
Sets canopy parameters from the given XML node.
Definition CanopyGenerator.cpp:161
+
SphericalCrownsCanopyParameters::buildCanopy
void buildCanopy(CanopyGenerator &canopy_generator) override
Makes the given Canopy generator build a canopy of our type with our parameters.
Definition CanopyGenerator.cpp:229
+
SphericalCrownsCanopyParameters::buildPlant
void buildPlant(CanopyGenerator &canopy_generator, helios::vec3 origin) override
Makes the given Canopy generator build a single plant of our canopy type with our parameters at the g...
Definition CanopyGenerator.cpp:225
+
SplitGrapevineParameters
Parameters defining the grapevine canopy with a split (quad) trellis.
Definition CanopyGenerator.h:398
+
SplitGrapevineParameters::buildCanopy
void buildCanopy(CanopyGenerator &canopy_generator) override
Makes the given Canopy generator build a canopy of our type with our parameters.
Definition CanopyGenerator.cpp:739
+
SplitGrapevineParameters::shoot_angle_base_spread
float shoot_angle_base_spread
Spread value for the base shoot angle. With any new canopy or plant generation, the base shoot angle ...
Definition CanopyGenerator.h:428
+
SplitGrapevineParameters::readParametersFromXML
void readParametersFromXML(const pugi::xml_node canopy_node)
Sets canopy parameters from the given XML node.
Definition CanopyGenerator.cpp:716
+
SplitGrapevineParameters::shoot_angle_base
float shoot_angle_base
Average angle of the shoot at the base (shoot_angle_base=0 points shoots upward; shoot_angle_base=M_P...
Definition CanopyGenerator.h:426
+
SplitGrapevineParameters::buildPlant
void buildPlant(CanopyGenerator &canopy_generator, helios::vec3 origin) override
Makes the given Canopy generator build a single plant of our canopy type with our parameters at the g...
Definition CanopyGenerator.cpp:735
+
SplitGrapevineParameters::SplitGrapevineParameters
SplitGrapevineParameters()
Default constructor.
Definition CanopyGenerator.cpp:669
+
SplitGrapevineParameters::cordon_spacing
float cordon_spacing
Spacing between two opposite cordons.
Definition CanopyGenerator.h:421
+
SplitGrapevineParameters::cordon_spacing_spread
float cordon_spacing_spread
Spread value for the cordon spacing. With any new canopy or plant generation, the cordon spacing woul...
Definition CanopyGenerator.h:423
+
SplitGrapevineParameters::shoot_angle_tip_spread
float shoot_angle_tip_spread
Spread value for the base shoot angle. With any new canopy or plant generation, the base shoot angle ...
Definition CanopyGenerator.h:433
+
SplitGrapevineParameters::shoot_angle_tip
float shoot_angle_tip
Average angle of the shoot at the tip (shoot_angle=0 is a completely vertical shoot; shoot_angle=M_PI...
Definition CanopyGenerator.h:431
+
StrawberryParameters
Parameters defining the strawberry plant canopy.
Definition CanopyGenerator.h:626
+
StrawberryParameters::stem_subdivisions
int stem_subdivisions
Number of radial subdivisions for stem tubes.
Definition CanopyGenerator.h:661
+
StrawberryParameters::stems_per_plant
int stems_per_plant
Number of stems per plant.
Definition CanopyGenerator.h:664
+
StrawberryParameters::fruit_radius
float fruit_radius
Radius of strawberry fruit.
Definition CanopyGenerator.h:682
+
StrawberryParameters::plant_spacing
float plant_spacing
Spacing between adjacent plants along the row direction.
Definition CanopyGenerator.h:670
+
StrawberryParameters::StrawberryParameters
StrawberryParameters()
Default constructor.
Definition CanopyGenerator.cpp:1080
+
StrawberryParameters::fruit_subdivisions
uint fruit_subdivisions
Number of azimuthal and zenithal subdivisions making up fruit (will result in roughly fruit_subdivisi...
Definition CanopyGenerator.h:688
+
StrawberryParameters::plant_count
helios::int2 plant_count
Number of crowns/plants in the x- and y-directions.
Definition CanopyGenerator.h:679
+
StrawberryParameters::plant_height
float plant_height
Height of the plant.
Definition CanopyGenerator.h:676
+
StrawberryParameters::readParametersFromXML
void readParametersFromXML(const pugi::xml_node canopy_node)
Sets canopy parameters from the given XML node.
Definition CanopyGenerator.cpp:1118
+
StrawberryParameters::buildPlant
void buildPlant(CanopyGenerator &canopy_generator, helios::vec3 origin) override
Makes the given Canopy generator build a single plant of our canopy type with our parameters at the g...
Definition CanopyGenerator.cpp:1192
+
StrawberryParameters::leaf_subdivisions
helios::int2 leaf_subdivisions
Number of sub-division segments per leaf.
Definition CanopyGenerator.h:652
+
StrawberryParameters::buildCanopy
void buildCanopy(CanopyGenerator &canopy_generator) override
Makes the given Canopy generator build a canopy of our type with our parameters.
Definition CanopyGenerator.cpp:1196
+
StrawberryParameters::fruit_texture_file
std::string fruit_texture_file
Texture map for strawberry fruit.
Definition CanopyGenerator.h:685
+
StrawberryParameters::clusters_per_stem
float clusters_per_stem
Number of strawberry clusters per plant stem. Clusters randomly have 1, 2, or 3 berries.
Definition CanopyGenerator.h:691
+
StrawberryParameters::stem_radius
float stem_radius
Radius of stems.
Definition CanopyGenerator.h:667
+
StrawberryParameters::leaf_texture_file
std::string leaf_texture_file
Path to texture map file for leaves.
Definition CanopyGenerator.h:655
+
StrawberryParameters::row_spacing
float row_spacing
Spacing between plant rows.
Definition CanopyGenerator.h:673
+
StrawberryParameters::stem_color
helios::RGBcolor stem_color
Color of stems.
Definition CanopyGenerator.h:658
+
StrawberryParameters::leaf_length
float leaf_length
Maximum width of leaves.
Definition CanopyGenerator.h:649
+
TomatoParameters
Parameters defining the tomato plant canopy.
Definition CanopyGenerator.h:565
+
TomatoParameters::shoot_subdivisions
int shoot_subdivisions
Number of radial subdivisions for shoot tubes.
Definition CanopyGenerator.h:600
+
TomatoParameters::buildPlant
void buildPlant(CanopyGenerator &canopy_generator, helios::vec3 origin) override
Makes the given Canopy generator build a single plant of our canopy type with our parameters at the g...
Definition CanopyGenerator.cpp:1072
+
TomatoParameters::leaf_length
float leaf_length
Maximum width of leaves.
Definition CanopyGenerator.h:588
+
TomatoParameters::fruit_color
helios::RGBcolor fruit_color
Color of tomato fruit.
Definition CanopyGenerator.h:618
+
TomatoParameters::leaf_subdivisions
helios::int2 leaf_subdivisions
Number of sub-division segments per leaf.
Definition CanopyGenerator.h:591
+
TomatoParameters::plant_count
helios::int2 plant_count
Number of crowns/plants in the x- and y-directions.
Definition CanopyGenerator.h:612
+
TomatoParameters::fruit_subdivisions
uint fruit_subdivisions
Number of azimuthal and zenithal subdivisions making up fruit (will result in roughly fruit_subdivisi...
Definition CanopyGenerator.h:621
+
TomatoParameters::shoot_color
helios::RGBcolor shoot_color
Color of shoots.
Definition CanopyGenerator.h:597
+
TomatoParameters::row_spacing
float row_spacing
Spacing between plant rows.
Definition CanopyGenerator.h:606
+
TomatoParameters::readParametersFromXML
void readParametersFromXML(const pugi::xml_node canopy_node)
Sets canopy parameters from the given XML node.
Definition CanopyGenerator.cpp:1007
+
TomatoParameters::plant_spacing
float plant_spacing
Spacing between adjacent plants along the row direction.
Definition CanopyGenerator.h:603
+
TomatoParameters::TomatoParameters
TomatoParameters()
Default constructor.
Definition CanopyGenerator.cpp:975
+
TomatoParameters::leaf_texture_file
std::string leaf_texture_file
Path to texture map file for leaves.
Definition CanopyGenerator.h:594
+
TomatoParameters::buildCanopy
void buildCanopy(CanopyGenerator &canopy_generator) override
Makes the given Canopy generator build a canopy of our type with our parameters.
Definition CanopyGenerator.cpp:1076
+
TomatoParameters::plant_height
float plant_height
Height of the plant.
Definition CanopyGenerator.h:609
+
TomatoParameters::fruit_radius
float fruit_radius
Radius of tomato fruit.
Definition CanopyGenerator.h:615
+
UnilateralGrapevineParameters
Parameters defining the grapevine canopy with unilateral trellis.
Definition CanopyGenerator.h:438
+
UnilateralGrapevineParameters::UnilateralGrapevineParameters
UnilateralGrapevineParameters()
Default constructor.
Definition CanopyGenerator.cpp:743
+
UnilateralGrapevineParameters::buildPlant
void buildPlant(CanopyGenerator &canopy_generator, helios::vec3 origin) override
Makes the given Canopy generator build a single plant of our canopy type with our parameters at the g...
Definition CanopyGenerator.cpp:785
+
UnilateralGrapevineParameters::readParametersFromXML
void readParametersFromXML(const pugi::xml_node canopy_node)
Sets canopy parameters from the given XML node.
Definition CanopyGenerator.cpp:781
+
UnilateralGrapevineParameters::buildCanopy
void buildCanopy(CanopyGenerator &canopy_generator) override
Makes the given Canopy generator build a canopy of our type with our parameters.
Definition CanopyGenerator.cpp:789
+
VSPGrapevineParameters
Parameters defining the grapevine canopy with vertical shoot positioned (VSP) trellis.
Definition CanopyGenerator.h:373
+
VSPGrapevineParameters::readParametersFromXML
void readParametersFromXML(const pugi::xml_node canopy_node)
Sets canopy parameters from the given XML node.
Definition CanopyGenerator.cpp:657
+
VSPGrapevineParameters::buildPlant
void buildPlant(CanopyGenerator &canopy_generator, helios::vec3 origin) override
Makes the given Canopy generator build a single plant of our canopy type with our parameters at the g...
Definition CanopyGenerator.cpp:661
+
VSPGrapevineParameters::buildCanopy
void buildCanopy(CanopyGenerator &canopy_generator) override
Makes the given Canopy generator build a canopy of our type with our parameters.
Definition CanopyGenerator.cpp:665
+
VSPGrapevineParameters::VSPGrapevineParameters
VSPGrapevineParameters()
Default constructor.
Definition CanopyGenerator.cpp:619
+
WalnutCanopyParameters
Parameters defining the walnut tree canopy.
Definition CanopyGenerator.h:696
+
WalnutCanopyParameters::plant_count
helios::int2 plant_count
Number of crowns/plants in the x- and y-directions.
Definition CanopyGenerator.h:759
+
WalnutCanopyParameters::wood_subdivisions
int wood_subdivisions
Number of radial subdivisions for branch tubes.
Definition CanopyGenerator.h:731
+
WalnutCanopyParameters::plant_spacing
float plant_spacing
Spacing between adjacent plants along the row direction.
Definition CanopyGenerator.h:744
+
WalnutCanopyParameters::WalnutCanopyParameters
WalnutCanopyParameters()
Default constructor.
Definition CanopyGenerator.cpp:1200
+
WalnutCanopyParameters::buildPlant
void buildPlant(CanopyGenerator &canopy_generator, helios::vec3 origin) override
Makes the given Canopy generator build a single plant of our canopy type with our parameters at the g...
Definition CanopyGenerator.cpp:1301
+
WalnutCanopyParameters::fruit_texture_file
std::string fruit_texture_file
Texture map for walnut fruit.
Definition CanopyGenerator.h:753
+
WalnutCanopyParameters::leaf_subdivisions
helios::int2 leaf_subdivisions
Number of sub-division segments per leaf.
Definition CanopyGenerator.h:722
+
WalnutCanopyParameters::fruit_subdivisions
uint fruit_subdivisions
Number of azimuthal and zenithal subdivisions making up fruit (will result in roughly fruit_subdivisi...
Definition CanopyGenerator.h:756
+
WalnutCanopyParameters::trunk_radius
float trunk_radius
Radius of trunk.
Definition CanopyGenerator.h:734
+
WalnutCanopyParameters::fruit_radius
float fruit_radius
Radius of walnuts.
Definition CanopyGenerator.h:750
+
WalnutCanopyParameters::leaf_texture_file
std::string leaf_texture_file
Path to texture map file for leaves.
Definition CanopyGenerator.h:725
+
WalnutCanopyParameters::leaf_length
float leaf_length
Maximum length of leaves along midrib.
Definition CanopyGenerator.h:719
+
WalnutCanopyParameters::readParametersFromXML
void readParametersFromXML(const pugi::xml_node canopy_node)
Sets canopy parameters from the given XML node.
Definition CanopyGenerator.cpp:1236
+
WalnutCanopyParameters::wood_texture_file
std::string wood_texture_file
Path to texture map file for wood/branches.
Definition CanopyGenerator.h:728
+
WalnutCanopyParameters::branch_length
helios::vec3 branch_length
Average length of branches in each recursive branch level. For example, the first (....
Definition CanopyGenerator.h:740
+
WalnutCanopyParameters::buildCanopy
void buildCanopy(CanopyGenerator &canopy_generator) override
Makes the given Canopy generator build a canopy of our type with our parameters.
Definition CanopyGenerator.cpp:1305
+
WalnutCanopyParameters::trunk_height
float trunk_height
Height of the trunk.
Definition CanopyGenerator.h:737
+
WalnutCanopyParameters::row_spacing
float row_spacing
Spacing between plant rows.
Definition CanopyGenerator.h:747
+
WhiteSpruceCanopyParameters
Parameters defining the white spruce.
Definition CanopyGenerator.h:489
+
WhiteSpruceCanopyParameters::needle_width
float needle_width
Width of needles.
Definition CanopyGenerator.h:512
+
WhiteSpruceCanopyParameters::needle_subdivisions
helios::int2 needle_subdivisions
Number of sub-division segments per needle.
Definition CanopyGenerator.h:518
+
WhiteSpruceCanopyParameters::readParametersFromXML
void readParametersFromXML(const pugi::xml_node canopy_node)
Sets canopy parameters from the given XML node.
Definition CanopyGenerator.cpp:883
+
WhiteSpruceCanopyParameters::buildCanopy
void buildCanopy(CanopyGenerator &canopy_generator) override
Makes the given Canopy generator build a canopy of our type with our parameters.
Definition CanopyGenerator.cpp:971
+
WhiteSpruceCanopyParameters::wood_texture_file
std::string wood_texture_file
Path to texture map file for trunks/branches.
Definition CanopyGenerator.h:524
+
WhiteSpruceCanopyParameters::plant_spacing
helios::vec2 plant_spacing
Spacing between adjacent crowns in the x- and y-directions. Note that if canopy_configuration='random...
Definition CanopyGenerator.h:557
+
WhiteSpruceCanopyParameters::needle_length
float needle_length
Length of needles.
Definition CanopyGenerator.h:515
+
WhiteSpruceCanopyParameters::trunk_height
float trunk_height
Distance between the ground and top of trunks.
Definition CanopyGenerator.h:530
+
WhiteSpruceCanopyParameters::level_spacing
float level_spacing
Vertical spacing between branching levels.
Definition CanopyGenerator.h:545
+
WhiteSpruceCanopyParameters::shoot_radius
float shoot_radius
Radius of shoot branches.
Definition CanopyGenerator.h:542
+
WhiteSpruceCanopyParameters::wood_subdivisions
int wood_subdivisions
Number of radial subdivisions for trunk/cordon/shoot tubes.
Definition CanopyGenerator.h:527
+
WhiteSpruceCanopyParameters::shoot_angle
float shoot_angle
Maximum shoot angle.
Definition CanopyGenerator.h:551
+
WhiteSpruceCanopyParameters::plant_count
helios::int2 plant_count
Number of crowns/plants in the x- and y-directions.
Definition CanopyGenerator.h:560
+
WhiteSpruceCanopyParameters::base_height
float base_height
Height at which branches start.
Definition CanopyGenerator.h:536
+
WhiteSpruceCanopyParameters::crown_radius
float crown_radius
Radius of the crown at the base.
Definition CanopyGenerator.h:539
+
WhiteSpruceCanopyParameters::needle_color
helios::RGBcolor needle_color
Color of needles.
Definition CanopyGenerator.h:521
+
WhiteSpruceCanopyParameters::trunk_radius
float trunk_radius
Radius of the trunk at the base.
Definition CanopyGenerator.h:533
+
WhiteSpruceCanopyParameters::buildPlant
void buildPlant(CanopyGenerator &canopy_generator, helios::vec3 origin) override
Makes the given Canopy generator build a single plant of our canopy type with our parameters at the g...
Definition CanopyGenerator.cpp:967
+
WhiteSpruceCanopyParameters::WhiteSpruceCanopyParameters
WhiteSpruceCanopyParameters()
Default constructor.
Definition CanopyGenerator.cpp:841
+
WhiteSpruceCanopyParameters::branches_per_level
int branches_per_level
Number of primary branches on the bottom level.
Definition CanopyGenerator.h:548
+
WhiteSpruceCanopyParameters::canopy_configuration
std::string canopy_configuration
Specifies whether to use a uniformly spaced canopy (canopy_configuration="uniform") or a randomly arr...
Definition CanopyGenerator.h:554
+
helios::RGBAcolor
R-G-B-A color vector.
Definition helios_vector_types.h:1024
+
helios::RGBAcolor::r
float r
Red color component.
Definition helios_vector_types.h:1029
+
helios::RGBAcolor::a
float a
Alpha (transparency) component.
Definition helios_vector_types.h:1038
+
helios::RGBAcolor::b
float b
Blue color component.
Definition helios_vector_types.h:1035
+
helios::RGBAcolor::g
float g
Green color component.
Definition helios_vector_types.h:1032
+
helios::SphericalCoord
Vector of spherical coordinates (elevation,azimuth)
Definition helios_vector_types.h:1471
+
helios::SphericalCoord::elevation
const float & elevation
Elevation angle (radians)
Definition helios_vector_types.h:1485
+
helios::SphericalCoord::azimuth
float azimuth
Azimuthal angle (radians)
Definition helios_vector_types.h:1492
helios::int2
Vector of two elements of type 'int'.
Definition helios_vector_types.h:44
helios::int2::y
int y
Second element in vector.
Definition helios_vector_types.h:50
helios::int2::x
int x
First element in vector.
Definition helios_vector_types.h:48
helios::vec2
Vector of two elements of type 'float'.
Definition helios_vector_types.h:346
helios::vec2::x
float x
First element in vector.
Definition helios_vector_types.h:350
helios::vec2::y
float y
Second element in vector.
Definition helios_vector_types.h:352
-
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:502
-
helios::vec3::x
float x
First element in vector.
Definition helios_vector_types.h:506
-
helios::vec3::z
float z
Third element in vector.
Definition helios_vector_types.h:510
-
helios::vec3::y
float y
Second element in vector.
Definition helios_vector_types.h:508
+
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:503
+
helios::vec3::x
float x
First element in vector.
Definition helios_vector_types.h:507
+
helios::vec3::z
float z
Third element in vector.
Definition helios_vector_types.h:511
+
helios::vec3::y
float y
Second element in vector.
Definition helios_vector_types.h:509
diff --git a/doc/html/_canopy_generator_8h.html b/doc/html/_canopy_generator_8h.html index d8cfe7ca7..b3d371de6 100644 --- a/doc/html/_canopy_generator_8h.html +++ b/doc/html/_canopy_generator_8h.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
@@ -114,6 +114,9 @@ + + + @@ -123,6 +126,8 @@ + + @@ -213,7 +218,7 @@

Definition at line 3055 of file CanopyGenerator.cpp.

+

Definition at line 3296 of file CanopyGenerator.cpp.

@@ -245,7 +250,7 @@

Definition at line 2775 of file CanopyGenerator.cpp.

+

Definition at line 3003 of file CanopyGenerator.cpp.

@@ -277,7 +282,7 @@

Definition at line 3020 of file CanopyGenerator.cpp.

+

Definition at line 3261 of file CanopyGenerator.cpp.

@@ -309,7 +314,7 @@

Definition at line 2985 of file CanopyGenerator.cpp.

+

Definition at line 3226 of file CanopyGenerator.cpp.

diff --git a/doc/html/_canopy_generator_8h_source.html b/doc/html/_canopy_generator_8h_source.html index c34ce5ea9..baaf3f2ff 100644 --- a/doc/html/_canopy_generator_8h_source.html +++ b/doc/html/_canopy_generator_8h_source.html @@ -38,7 +38,7 @@

@@ -111,1208 +111,1223 @@
19#include "Context.h"
20#include <random>
21
-
-
23struct HomogeneousCanopyParameters{
-
24
-
26 HomogeneousCanopyParameters();
-
27
-
29 helios::vec2 leaf_size;
-
30
-
32 helios::int2 leaf_subdivisions;
-
33
-
35 std::string leaf_texture_file;
+
22class CanopyGenerator;
+
23
+
+
25struct BaseCanopyParameters{
+
26
+
28 BaseCanopyParameters();
+
29
+
33 BaseCanopyParameters(const pugi::xml_node canopy_node);
+
34
+
35 virtual ~BaseCanopyParameters() = default;
36
-
38 helios::RGBcolor leaf_color;
-
39
-
41 std::string leaf_angle_distribution;
+
38
+
41 void readParametersFromXML(const pugi::xml_node canopy_node);
42
-
44 float leaf_area_index;
+
44 virtual void buildPlant(CanopyGenerator& canopy_generator, helios::vec3 origin) = 0;
45
-
47 float canopy_height;
+
47 virtual void buildCanopy(CanopyGenerator& canopy_generator) = 0;
48
-
50 helios::vec2 canopy_extent;
+
50 helios::vec3 canopy_origin;
51
-
53 helios::vec3 canopy_origin;
+
53 float canopy_rotation;
54
-
56 std::vector<float> leaf_angle_PDF;
-
57
-
59 std::string buffer;
-
60
-
61};
+
55};
+
56
+
+
58struct HomogeneousCanopyParameters : BaseCanopyParameters{
+
59
+
61 HomogeneousCanopyParameters();
62
-
-
64struct SphericalCrownsCanopyParameters{
-
65
-
67 SphericalCrownsCanopyParameters();
-
68
-
70 helios::vec2 leaf_size;
-
71
-
73 helios::int2 leaf_subdivisions;
-
74
-
76 std::string leaf_texture_file;
-
77
-
79 helios::RGBcolor leaf_color;
-
80
-
82 std::string leaf_angle_distribution;
-
83
-
85 float leaf_area_density;
-
86
-
88 helios::vec3 crown_radius;
-
89
-
91 std::string canopy_configuration;
-
92
-
94 helios::vec2 plant_spacing;
-
95
-
97 helios::int2 plant_count;
-
98
-
100 helios::vec3 canopy_origin;
-
101
-
103 float canopy_rotation;
-
104
-
106 std::vector<float> leaf_angle_PDF;
-
107
-
108};
+
66 HomogeneousCanopyParameters(const pugi::xml_node canopy_node);
+
67
+
69
+
72 void readParametersFromXML(const pugi::xml_node canopy_node);
+
73
+
75 void buildPlant(CanopyGenerator& canopy_generator, helios::vec3 origin) override;
+
76
+
78 void buildCanopy(CanopyGenerator& canopy_generator) override;
+
79
+
81 helios::vec2 leaf_size;
+
82
+
84 helios::int2 leaf_subdivisions;
+
85
+
87 std::string leaf_texture_file;
+
88
+
90 helios::RGBcolor leaf_color;
+
91
+
93 std::string leaf_angle_distribution;
+
94
+
96 float leaf_area_index;
+
97
+
99 float canopy_height;
+
100
+
102 helios::vec2 canopy_extent;
+
103
+
105 std::vector<float> leaf_angle_PDF;
+
106
+
108 std::string buffer;
+
109
+
110};
-
109
-
-
111struct ConicalCrownsCanopyParameters{
-
112
-
114 ConicalCrownsCanopyParameters();
-
115
-
117 helios::vec2 leaf_size;
-
118
-
120 helios::int2 leaf_subdivisions;
-
121
-
123 std::string leaf_texture_file;
+
111
+
+
113struct SphericalCrownsCanopyParameters : BaseCanopyParameters{
+
114
+
116 SphericalCrownsCanopyParameters();
+
117
+
121 SphericalCrownsCanopyParameters(const pugi::xml_node canopy_node);
+
122
124
-
126 helios::RGBcolor leaf_color;
-
127
-
129 std::string leaf_angle_distribution;
-
130
-
132 float leaf_area_density;
-
133
-
135 float crown_radius;
-
136
-
138 float crown_height;
-
139
-
141 std::string canopy_configuration;
-
142
-
144 helios::vec2 plant_spacing;
-
145
-
147 helios::int2 plant_count;
-
148
-
150 helios::vec3 canopy_origin;
-
151
-
153 float canopy_rotation;
-
154
-
156 std::vector<float> leaf_angle_PDF;
-
157
-
158};
+
127 void readParametersFromXML(const pugi::xml_node canopy_node);
+
128
+
130 void buildPlant(CanopyGenerator& canopy_generator, helios::vec3 origin) override;
+
131
+
133 void buildCanopy(CanopyGenerator& canopy_generator) override;
+
134
+
136 helios::vec2 leaf_size;
+
137
+
139 helios::int2 leaf_subdivisions;
+
140
+
142 std::string leaf_texture_file;
+
143
+
145 helios::RGBcolor leaf_color;
+
146
+
148 std::string leaf_angle_distribution;
+
149
+
151 float leaf_area_density;
+
152
+
154 helios::vec3 crown_radius;
+
155
+
157 std::string canopy_configuration;
+
158
+
160 helios::vec2 plant_spacing;
+
161
+
163 helios::int2 plant_count;
+
164
+
166 std::vector<float> leaf_angle_PDF;
+
167
+
168};
-
159
-
-
161struct VSPGrapevineParameters{
-
162
-
164 VSPGrapevineParameters();
-
165
-
167 float leaf_width;
-
168
-
170 helios::int2 leaf_subdivisions;
-
171
-
173 std::string leaf_texture_file;
-
174
-
176 std::string wood_texture_file;
-
177
-
179 int wood_subdivisions;
-
180
-
182 float plant_spacing;
-
183
-
185 float row_spacing;
+
169
+
+
171struct ConicalCrownsCanopyParameters : BaseCanopyParameters{
+
172
+
174 ConicalCrownsCanopyParameters();
+
175
+
179 ConicalCrownsCanopyParameters(const pugi::xml_node canopy_node);
+
180
+
182
+
185 void readParametersFromXML(const pugi::xml_node canopy_node);
186
-
188 float trunk_height;
+
188 void buildPlant(CanopyGenerator& canopy_generator, helios::vec3 origin) override;
189
-
191 float trunk_radius;
+
191 void buildCanopy(CanopyGenerator& canopy_generator) override;
192
-
194 float cordon_height;
+
194 helios::vec2 leaf_size;
195
-
197 float cordon_radius;
-
198
-
200 float shoot_length;
+
197 helios::int2 leaf_subdivisions;
+
198
+
200 std::string leaf_texture_file;
201
-
203 float shoot_radius;
+
203 helios::RGBcolor leaf_color;
204
-
206 uint shoots_per_cordon;
+
206 std::string leaf_angle_distribution;
207
-
209 float leaf_spacing_fraction;
+
209 float leaf_area_density;
210
-
212 helios::int2 plant_count;
+
212 float crown_radius;
213
-
215 helios::vec3 canopy_origin;
+
215 float crown_height;
216
-
218 float canopy_rotation;
+
218 std::string canopy_configuration;
219
-
221 float grape_radius;
+
221 helios::vec2 plant_spacing;
222
-
224 float cluster_radius;
+
224 helios::int2 plant_count;
225
-
227 float cluster_height_max;
+
227 std::vector<float> leaf_angle_PDF;
228
-
230 helios::RGBcolor grape_color;
-
231
-
233 uint grape_subdivisions;
-
234
-
236 std::vector<float> leaf_angle_PDF;
-
237
-
238};
+
229};
-
239
-
-
241struct SplitGrapevineParameters{
+
230
+
+
231struct BaseGrapeVineParameters : BaseCanopyParameters{
+
232
+
234 BaseGrapeVineParameters();
+
235
+
239 BaseGrapeVineParameters(const pugi::xml_node canopy_node);
+
240
+
241 virtual ~BaseGrapeVineParameters() = default;
242
-
244 SplitGrapevineParameters();
-
245
-
247 float leaf_width;
+
244
+
247 void readParametersFromXML(const pugi::xml_node canopy_node);
248
-
250 helios::int2 leaf_subdivisions;
+
250 void buildPlant(CanopyGenerator& canopy_generator, helios::vec3 origin) override;
251
-
253 std::string leaf_texture_file;
+
253 void buildCanopy(CanopyGenerator& canopy_generator) override;
254
-
256 std::string wood_texture_file;
-
257
-
259 int wood_subdivisions;
-
260
-
262 float plant_spacing;
-
263
-
265 float row_spacing;
-
266
-
268 float trunk_height;
-
269
-
271 float trunk_radius;
-
272
-
274 float cordon_height;
-
275
-
277 float cordon_radius;
+
256 float leaf_width;
+
258 float leaf_width_spread;
+
259
+
261 helios::int2 leaf_subdivisions;
+
262
+
264 std::string leaf_texture_file;
+
265
+
267 std::string wood_texture_file;
+
268
+
270 int wood_subdivisions;
+
272 int wood_subdivisions_spread;
+
273
+
275 float dead_probability;
+
276
278
-
280 float cordon_spacing;
-
281
-
283 float shoot_length;
-
284
-
286 float shoot_radius;
+
281 float missing_plant_probability;
+
282
+
284 float plant_spacing;
+
286 float plant_spacing_spread;
287
-
289 uint shoots_per_cordon;
-
290
-
292 float shoot_angle_base;
-
293
-
295 float shoot_angle_tip;
-
296
-
298 float leaf_spacing_fraction;
-
299
-
301 helios::int2 plant_count;
+
289 float row_spacing;
+
291 float row_spacing_spread;
+
292
+
294 float trunk_height;
+
296 float trunk_height_spread;
+
297
+
299 float trunk_radius;
+
301 float trunk_radius_spread;
302
-
304 helios::vec3 canopy_origin;
-
305
-
307 float canopy_rotation;
-
308
-
310 float grape_radius;
-
311
-
313 float cluster_radius;
-
314
-
316 float cluster_height_max;
+
304 float cordon_length;
+
306 float cordon_length_spread;
+
307
+
309 float cordon_height;
+
311 float cordon_height_spread;
+
312
+
314 float cordon_radius;
+
316 float cordon_radius_spread;
317
-
319 helios::RGBcolor grape_color;
-
320
-
322 uint grape_subdivisions;
-
323
-
325 std::vector<float> leaf_angle_PDF;
-
326
-
327};
-
-
328
- +
371
+
+
373struct VSPGrapevineParameters : BaseGrapeVineParameters{
+
374
+
376 VSPGrapevineParameters();
+
377
+
381 VSPGrapevineParameters(const pugi::xml_node canopy_node);
382
-
384 helios::vec3 canopy_origin;
-
385
-
387 float canopy_rotation;
+
384
+
387 void readParametersFromXML(const pugi::xml_node canopy_node);
388
-
390 float grape_radius;
+
390 void buildPlant(CanopyGenerator& canopy_generator, helios::vec3 origin) override;
391
-
393 float cluster_radius;
-
394
-
396 float cluster_height_max;
-
397
-
399 helios::RGBcolor grape_color;
-
400
-
402 uint grape_subdivisions;
-
403
-
405 std::vector<float> leaf_angle_PDF;
-
406
-
407};
+
393 void buildCanopy(CanopyGenerator& canopy_generator) override;
+
394
+
395};
-
408
+
396
+
+
398struct SplitGrapevineParameters : BaseGrapeVineParameters{
+
399
+
401 SplitGrapevineParameters();
+
402
+
406 SplitGrapevineParameters(const pugi::xml_node canopy_node);
+
407
409
-
-
411struct GobletGrapevineParameters{
-
412
-
414 GobletGrapevineParameters();
-
415
-
417 float leaf_width;
-
418
-
420 helios::int2 leaf_subdivisions;
-
421
-
423 std::string leaf_texture_file;
+
412 void readParametersFromXML(const pugi::xml_node canopy_node);
+
413
+
415 void buildPlant(CanopyGenerator& canopy_generator, helios::vec3 origin) override;
+
416
+
418 void buildCanopy(CanopyGenerator& canopy_generator) override;
+
419
+
421 float cordon_spacing;
+
423 float cordon_spacing_spread;
424
-
426 std::string wood_texture_file;
-
427
-
429 int wood_subdivisions;
-
430
-
432 float plant_spacing;
-
433
-
435 float row_spacing;
+
426 float shoot_angle_base;
+
428 float shoot_angle_base_spread;
+
429
+
431 float shoot_angle_tip;
+
433 float shoot_angle_tip_spread;
+
434
+
435};
+
436
-
438 float trunk_height;
+
+
438struct UnilateralGrapevineParameters : BaseGrapeVineParameters{
439
-
441 float trunk_radius;
+
441 UnilateralGrapevineParameters();
442
-
444 float cordon_height;
-
445
-
447 float cordon_radius;
-
448
-
450 float shoot_length;
-
451
-
453 float shoot_radius;
-
454
-
456 uint shoots_per_cordon;
-
457
-
459 float leaf_spacing_fraction;
-
460
-
462 helios::int2 plant_count;
-
463
-
465 helios::vec3 canopy_origin;
-
466
-
468 float canopy_rotation;
-
469
-
471 float grape_radius;
-
472
-
474 float cluster_radius;
+
446 UnilateralGrapevineParameters(const pugi::xml_node canopy_node);
+
447
+
449
+
452 void readParametersFromXML(const pugi::xml_node canopy_node);
+
453
+
455 void buildPlant(CanopyGenerator& canopy_generator, helios::vec3 origin) override;
+
456
+
458 void buildCanopy(CanopyGenerator& canopy_generator) override;
+
459
+
460};
+
+
461
+
462
+
+
464struct GobletGrapevineParameters : BaseGrapeVineParameters{
+
465
+
467 GobletGrapevineParameters();
+
468
+
472 GobletGrapevineParameters(const pugi::xml_node canopy_node);
+
473
475
-
477 float cluster_height_max;
-
478
-
480 helios::RGBcolor grape_color;
-
481
-
483 uint grape_subdivisions;
-
484
-
486 std::vector<float> leaf_angle_PDF;
-
487
-
488};
+
478 void readParametersFromXML(const pugi::xml_node canopy_node);
+
479
+
481 void buildPlant(CanopyGenerator& canopy_generator, helios::vec3 origin) override;
+
482
+
484 void buildCanopy(CanopyGenerator& canopy_generator) override;
+
485
+
486};
-
489
-
-
491struct WhiteSpruceCanopyParameters{
-
492
-
494 WhiteSpruceCanopyParameters();
-
495
-
497 float needle_width;
+
487
+
+
489struct WhiteSpruceCanopyParameters : BaseCanopyParameters{
+
490
+
492 WhiteSpruceCanopyParameters();
+
493
+
497 WhiteSpruceCanopyParameters(const pugi::xml_node canopy_node);
498
-
500 float needle_length;
-
501
-
503 helios::int2 needle_subdivisions;
+
500
+
503 void readParametersFromXML(const pugi::xml_node canopy_node);
504
-
506 helios::RGBcolor needle_color;
+
506 void buildPlant(CanopyGenerator& canopy_generator, helios::vec3 origin) override;
507
-
509 std::string wood_texture_file;
+
509 void buildCanopy(CanopyGenerator& canopy_generator) override;
510
-
512 int wood_subdivisions;
+
512 float needle_width;
513
-
515 float trunk_height;
+
515 float needle_length;
516
-
518 float trunk_radius;
+
518 helios::int2 needle_subdivisions;
519
-
521 float base_height;
+
521 helios::RGBcolor needle_color;
522
-
524 float crown_radius;
+
524 std::string wood_texture_file;
525
-
527 float shoot_radius;
+
527 int wood_subdivisions;
528
-
530 float level_spacing;
+
530 float trunk_height;
531
-
533 int branches_per_level;
+
533 float trunk_radius;
534
-
536 float shoot_angle;
+
536 float base_height;
537
-
539 std::string canopy_configuration;
-
540
-
542 helios::vec2 plant_spacing;
+
539 float crown_radius;
+
540
+
542 float shoot_radius;
543
-
545 helios::int2 plant_count;
+
545 float level_spacing;
546
-
548 helios::vec3 canopy_origin;
+
548 int branches_per_level;
549
-
551 float canopy_rotation;
-
552
-
553};
+
551 float shoot_angle;
+
552
+
554 std::string canopy_configuration;
+
555
+
557 helios::vec2 plant_spacing;
+
558
+
560 helios::int2 plant_count;
+
561
+
562};
-
554
-
-
556struct TomatoParameters{
-
557
-
559 TomatoParameters();
-
560
-
562 float leaf_length;
563
-
565 helios::int2 leaf_subdivisions;
+ +
573 TomatoParameters(const pugi::xml_node canopy_node);
+
574
+
576
+
579 void readParametersFromXML(const pugi::xml_node canopy_node);
+
580
+
582 void buildPlant(CanopyGenerator& canopy_generator, helios::vec3 origin) override;
+
583
+
585 void buildCanopy(CanopyGenerator& canopy_generator) override;
+
586
+
588 float leaf_length;
+
589
+
591 helios::int2 leaf_subdivisions;
+
592
+
594 std::string leaf_texture_file;
+
595
+
597 helios::RGBcolor shoot_color;
+
598
+
600 int shoot_subdivisions;
+
601
+
603 float plant_spacing;
604
- +
624
+
+
626struct StrawberryParameters : BaseCanopyParameters{
+
627
+
629 StrawberryParameters();
+
630
+
634 StrawberryParameters(const pugi::xml_node canopy_node);
+
635
637
-
639 float plant_height;
-
640
-
642 helios::int2 plant_count;
-
643
-
645 helios::vec3 canopy_origin;
-
646
-
648 float canopy_rotation;
-
649
-
651 float fruit_radius;
-
652
-
654 std::string fruit_texture_file;
-
655
-
657 uint fruit_subdivisions;
-
658
-
660 float clusters_per_stem;
-
661
-
662};
+
640 void readParametersFromXML(const pugi::xml_node canopy_node);
+
641
+
643 void buildPlant(CanopyGenerator& canopy_generator, helios::vec3 origin) override;
+
644
+
646 void buildCanopy(CanopyGenerator& canopy_generator) override;
+
647
+
649 float leaf_length;
+
650
+
652 helios::int2 leaf_subdivisions;
+
653
+
655 std::string leaf_texture_file;
+
656
+
658 helios::RGBcolor stem_color;
+
659
+
661 int stem_subdivisions;
+
662
+
664 int stems_per_plant;
+
665
+
667 float stem_radius;
+
668
+
670 float plant_spacing;
+
671
+
673 float row_spacing;
+
674
+
676 float plant_height;
+
677
+
679 helios::int2 plant_count;
+
680
+
682 float fruit_radius;
+
683
+
685 std::string fruit_texture_file;
+
686
+
688 uint fruit_subdivisions;
+
689
+
691 float clusters_per_stem;
+
692
+
693};
-
663
-
-
665struct WalnutCanopyParameters{
-
666
-
668 WalnutCanopyParameters();
-
669
-
671 float leaf_length;
-
672
-
674 helios::int2 leaf_subdivisions;
-
675
-
677 std::string leaf_texture_file;
-
678
-
680 std::string wood_texture_file;
-
681
-
683 int wood_subdivisions;
-
684
-
686 float trunk_radius;
-
687
-
689 float trunk_height;
-
690
-
692 helios::vec3 branch_length;
-
693
-
694
-
696 float plant_spacing;
+
694
+ +
704 WalnutCanopyParameters(const pugi::xml_node canopy_node);
+
705
+
707
+
710 void readParametersFromXML(const pugi::xml_node canopy_node);
+
711
+
713 void buildPlant(CanopyGenerator& canopy_generator, helios::vec3 origin) override;
+
714
+
716 void buildCanopy(CanopyGenerator& canopy_generator) override;
+
717
+
719 float leaf_length;
720
-
-
722struct SorghumCanopyParameters{
+
722 helios::int2 leaf_subdivisions;
723
-
725 SorghumCanopyParameters();
+
725 std::string leaf_texture_file;
726
-
728 int sorghum_stage;
+
728 std::string wood_texture_file;
729
-
730 // STAGE 1
-
731
-
733 float s1_stem_length;
-
734
-
736 float s1_stem_radius;
-
737
-
739 float s1_stem_subdivisions;
-
740
-
742 helios::vec2 s1_leaf_size1;
-
743
-
745 helios::vec2 s1_leaf_size2;
-
746
-
748 helios::vec2 s1_leaf_size3;
-
749
-
751 float s1_leaf1_angle;
-
752
-
754 float s1_leaf2_angle;
-
755
-
757 float s1_leaf3_angle;
-
758
-
760 helios::int2 s1_leaf_subdivisions;
-
761
-
763 std::string s1_leaf_texture_file;
-
764
-
765 // STAGE 2
-
766
-
768 float s2_stem_length;
-
769
-
771 float s2_stem_radius;
-
772
-
774 float s2_stem_subdivisions;
+
731 int wood_subdivisions;
+
732
+
734 float trunk_radius;
+
735
+
737 float trunk_height;
+
738
+
740 helios::vec3 branch_length;
+
741
+
742
+
744 float plant_spacing;
+
745
+
747 float row_spacing;
+
748
+
750 float fruit_radius;
+
751
+
753 std::string fruit_texture_file;
+
754
+
756 uint fruit_subdivisions;
+
757
+
759 helios::int2 plant_count;
+
760
+
761};
+
+
762
+
+
764struct SorghumCanopyParameters : BaseCanopyParameters{
+
765
+
767 SorghumCanopyParameters();
+
768
+
772 SorghumCanopyParameters(const pugi::xml_node canopy_node);
+
773
775
-
777 helios::vec2 s2_leaf_size1;
-
778
-
780 helios::vec2 s2_leaf_size2;
-
781
-
783 helios::vec2 s2_leaf_size3;
-
784
-
786 helios::vec2 s2_leaf_size4;
-
787
-
789 helios::vec2 s2_leaf_size5;
+
778 void readParametersFromXML(const pugi::xml_node canopy_node);
+
779
+
781 void buildPlant(CanopyGenerator& canopy_generator, helios::vec3 origin) override;
+
782
+
784 void buildCanopy(CanopyGenerator& canopy_generator) override;
+
785
+
787 int sorghum_stage;
+
788
+
789 // STAGE 1
790
-
792 float s2_leaf1_angle;
+
792 float s1_stem_length;
793
-
795 float s2_leaf2_angle;
+
795 float s1_stem_radius;
796
-
798 float s2_leaf3_angle;
+
798 float s1_stem_subdivisions;
799
-
801 float s2_leaf4_angle;
+
801 helios::vec2 s1_leaf_size1;
802
-
804 float s2_leaf5_angle;
+
804 helios::vec2 s1_leaf_size2;
805
-
807 helios::int2 s2_leaf_subdivisions;
+
807 helios::vec2 s1_leaf_size3;
808
-
810 std::string s2_leaf_texture_file;
+
810 float s1_leaf1_angle;
811
-
812 // STAGE 3
-
813
-
815 float s3_stem_length;
-
816
-
818 float s3_stem_radius;
-
819
-
821 float s3_stem_subdivisions;
-
822
-
824 helios::vec2 s3_leaf_size;
+
813 float s1_leaf2_angle;
+
814
+
816 float s1_leaf3_angle;
+
817
+
819 helios::int2 s1_leaf_subdivisions;
+
820
+
822 std::string s1_leaf_texture_file;
+
823
+
824 // STAGE 2
825
-
827 helios::int2 s3_leaf_subdivisions;
+
827 float s2_stem_length;
828
-
830 int s3_number_of_leaves;
+
830 float s2_stem_radius;
831
-
833 float s3_mean_leaf_angle;
+
833 float s2_stem_subdivisions;
834
-
836 std::string s3_leaf_texture_file;
+
836 helios::vec2 s2_leaf_size1;
837
-
838 // STAGE 4
-
839
-
841 float s4_stem_length;
-
842
-
844 float s4_stem_radius;
-
845
-
847 float s4_stem_subdivisions;
-
848
-
850 helios::vec2 s4_panicle_size;
-
851
-
853 int s4_panicle_subdivisions;
-
854
-
856 std::string s4_seed_texture_file;
-
857
-
859 helios::vec2 s4_leaf_size;
-
860
-
862 helios::int2 s4_leaf_subdivisions;
-
863
-
865 int s4_number_of_leaves;
-
866
-
868 float s4_mean_leaf_angle;
-
869
-
871 std::string s4_leaf_texture_file;
+
839 helios::vec2 s2_leaf_size2;
+
840
+
842 helios::vec2 s2_leaf_size3;
+
843
+
845 helios::vec2 s2_leaf_size4;
+
846
+
848 helios::vec2 s2_leaf_size5;
+
849
+
851 float s2_leaf1_angle;
+
852
+
854 float s2_leaf2_angle;
+
855
+
857 float s2_leaf3_angle;
+
858
+
860 float s2_leaf4_angle;
+
861
+
863 float s2_leaf5_angle;
+
864
+
866 helios::int2 s2_leaf_subdivisions;
+
867
+
869 std::string s2_leaf_texture_file;
+
870
+
871 // STAGE 3
872
-
873 // STAGE 5
-
874
-
876 float s5_stem_length;
-
877
-
879 float s5_stem_radius;
-
880
-
882 float s5_stem_bend;
-
883
-
885 int s5_stem_subdivisions;
-
886
-
888 helios::vec2 s5_panicle_size;
-
889
-
891 int s5_panicle_subdivisions;
-
892
-
894 std::string s5_seed_texture_file;
-
895
-
897 helios::vec2 s5_leaf_size;
+
874 float s3_stem_length;
+
875
+
877 float s3_stem_radius;
+
878
+
880 float s3_stem_subdivisions;
+
881
+
883 helios::vec2 s3_leaf_size;
+
884
+
886 helios::int2 s3_leaf_subdivisions;
+
887
+
889 int s3_number_of_leaves;
+
890
+
892 float s3_mean_leaf_angle;
+
893
+
895 std::string s3_leaf_texture_file;
+
896
+
897 // STAGE 4
898
-
900 helios::int2 s5_leaf_subdivisions;
+
900 float s4_stem_length;
901
-
903 int s5_number_of_leaves;
+
903 float s4_stem_radius;
904
-
906 float s5_mean_leaf_angle;
+
906 float s4_stem_subdivisions;
907
-
909 std::string s5_leaf_texture_file;
+
909 helios::vec2 s4_panicle_size;
910
-
911 // CANOPY
-
913 float plant_spacing;
-
914
-
916 float row_spacing;
-
917
-
919 helios::int2 plant_count;
-
920
-
922 helios::vec3 canopy_origin;
-
923
-
924};
-
+
912 int s4_panicle_subdivisions;
+
913
+
915 std::string s4_seed_texture_file;
+
916
+
918 helios::vec2 s4_leaf_size;
+
919
+
921 helios::int2 s4_leaf_subdivisions;
+
922
+
924 int s4_number_of_leaves;
925
-
-
927struct BeanParameters{
+
927 float s4_mean_leaf_angle;
928
-
930 BeanParameters();
+
930 std::string s4_leaf_texture_file;
931
-
933 float leaf_length;
-
934
-
936 helios::int2 leaf_subdivisions;
-
937
-
939 std::string leaf_texture_file;
-
940
-
942 helios::RGBcolor shoot_color;
-
943
-
945 int shoot_subdivisions;
-
946
-
948 float stem_radius;
-
949
-
951 float stem_length;
-
952
-
954 float leaflet_length;
-
955
-
957 float plant_spacing;
-
958
-
960 float row_spacing;
-
961
-
963 helios::int2 plant_count;
-
964
-
966 float germination_probability;
-
967
-
969 helios::vec3 canopy_origin;
-
970
-
972 float canopy_rotation;
+
932 // STAGE 5
+
933
+
935 float s5_stem_length;
+
936
+
938 float s5_stem_radius;
+
939
+
941 float s5_stem_bend;
+
942
+
944 int s5_stem_subdivisions;
+
945
+
947 helios::vec2 s5_panicle_size;
+
948
+
950 int s5_panicle_subdivisions;
+
951
+
953 std::string s5_seed_texture_file;
+
954
+
956 helios::vec2 s5_leaf_size;
+
957
+
959 helios::int2 s5_leaf_subdivisions;
+
960
+
962 int s5_number_of_leaves;
+
963
+
965 float s5_mean_leaf_angle;
+
966
+
968 std::string s5_leaf_texture_file;
+
969
+
970 // CANOPY
+
972 float plant_spacing;
973
-
975 float pod_length;
+
975 float row_spacing;
976
-
978 helios::RGBcolor pod_color;
+
978 helios::int2 plant_count;
979
-
981 uint pod_subdivisions;
-
982
-
983};
+
980};
+
981
+
+
983struct BeanParameters : BaseCanopyParameters{
984
-
-
985class CanopyGenerator{
-
986 public:
+
986 BeanParameters();
987
-
989
-
992 explicit CanopyGenerator( helios::Context* context );
-
993
-
995 int selfTest();
-
996
+
991 BeanParameters(const pugi::xml_node canopy_node);
+
992
+
994
+
997 void readParametersFromXML(const pugi::xml_node canopy_node);
998
-
1001 void loadXML( const char* filename );
-
1002
+
1000 void buildPlant(CanopyGenerator& canopy_generator, helios::vec3 origin) override;
+
1001
+
1003 void buildCanopy(CanopyGenerator& canopy_generator) override;
1004
-
1007 void buildCanopy( const HomogeneousCanopyParameters &params );
-
1008
+
1006 float leaf_length;
+
1007
+
1009 helios::int2 leaf_subdivisions;
1010
-
1013 void buildCanopy( const SphericalCrownsCanopyParameters &params );
-
1014
+
1012 std::string leaf_texture_file;
+
1013
+
1015 helios::RGBcolor shoot_color;
1016
-
1019 void buildCanopy( const ConicalCrownsCanopyParameters &params );
-
1020
+
1018 int shoot_subdivisions;
+
1019
+
1021 float stem_radius;
1022
-
1025 void buildCanopy( const VSPGrapevineParameters &params );
-
1026
+
1024 float stem_length;
+
1025
+
1027 float leaflet_length;
1028
-
1031 void buildCanopy( const SplitGrapevineParameters &params );
-
1032
+
1030 float plant_spacing;
+
1031
+
1033 float row_spacing;
1034
-
1037 void buildCanopy( const UnilateralGrapevineParameters &params );
-
1038
+
1036 helios::int2 plant_count;
+
1037
+
1039 float germination_probability;
1040
-
1043 void buildCanopy( const GobletGrapevineParameters &params );
-
1044
+
1042 float pod_length;
+
1043
+
1045 helios::RGBcolor pod_color;
1046
-
1049 void buildCanopy( const WhiteSpruceCanopyParameters &params );
-
1050
-
1052
-
1055 void buildCanopy( const TomatoParameters &params );
+
1048 uint pod_subdivisions;
+
1049
+
1050};
+
+
1051
+
+
1052class CanopyGenerator{
+
1053 public:
+
1054
1056
-
1058
-
1061 void buildCanopy( const StrawberryParameters &params );
-
1062
-
1064
-
1067 void buildCanopy(const WalnutCanopyParameters &params );
-
1068
-
1070
-
1073 void buildCanopy( const SorghumCanopyParameters &params );
-
1074
+
1059 explicit CanopyGenerator( helios::Context* context );
+
1060
+
1062 int selfTest();
+
1063
+
1065 template <typename CanopyType, typename... Args>
+
1066 void storeCanopyParameters(Args&&... args);
+
1067
+
1068 std::vector<std::shared_ptr<BaseCanopyParameters>> getCanopyParametersList();
+
1069
+
1071
+
1075 void loadXML( const char* filename, bool build = true );
1076
-
1079 void buildCanopy( const BeanParameters &params );
-
1080
-
1082
-
1090 void buildGround( const helios::vec3 &ground_origin, const helios::vec2 &ground_extent, const helios::int2 &texture_subtiles, const helios::int2 &texture_subpatches, const char* ground_texture_file );
+
1078 void buildCanopies();
+
1079
+
1081
+
1084 void buildCanopy( const HomogeneousCanopyParameters &params );
+
1085
+
1087
+
1090 void buildCanopy( const SphericalCrownsCanopyParameters &params );
1091
1093
-
1101 void buildGround( const helios::vec3 &ground_origin, const helios::vec2 &ground_extent, const helios::int2 &texture_subtiles, const helios::int2 &texture_subpatches, const char* ground_texture_file, float ground_rotation );
-
1102
-
1104
-
1107 std::vector<uint> getTrunkUUIDs( uint PlantID );
-
1108
-
1110 std::vector<uint> getTrunkUUIDs();
+
1096 void buildCanopy( const ConicalCrownsCanopyParameters &params );
+
1097
+
1099
+
1102 void buildCanopy( const VSPGrapevineParameters &params );
+
1103
+
1105
+
1108 void buildCanopy( const SplitGrapevineParameters &params );
+
1109
1111
-
1113
-
1116 std::vector<uint> getBranchUUIDs( uint PlantID );
+
1114 void buildCanopy( const UnilateralGrapevineParameters &params );
+
1115
1117
-
1119 std::vector<uint> getBranchUUIDs();
-
1120
-
1122
-
1126 std::vector<std::vector<uint> > getLeafUUIDs( uint PlantID );
+
1120 void buildCanopy( const GobletGrapevineParameters &params );
+
1121
+
1123
+
1126 void buildCanopy( const WhiteSpruceCanopyParameters &params );
1127
-
1129 std::vector<uint> getLeafUUIDs();
-
1130
-
1132
-
1136 std::vector<std::vector<std::vector<uint> > > getFruitUUIDs( uint PlantID );
-
1137
-
1139 std::vector<uint> getFruitUUIDs();
-
1140
-
1142 std::vector<uint> getGroundUUIDs();
-
1143
+
1129
+
1132 void buildCanopy( const TomatoParameters &params );
+
1133
+
1135
+
1138 void buildCanopy( const StrawberryParameters &params );
+
1139
+
1141
+
1144 void buildCanopy(const WalnutCanopyParameters &params );
1145
-
1148 std::vector<uint> getAllUUIDs( uint PlantID );
-
1149
-
1151 uint getPlantCount();
-
1152
-
1154
-
1157 void seedRandomGenerator( uint seed );
-
1158
-
1160 void disableMessages();
-
1161
-
1163 void enableMessages();
-
1164
-
1165 //---------- PLANT GEOMETRIES ------------ //
-
1166
+
1147
+
1150 void buildCanopy( const SorghumCanopyParameters &params );
+
1151
+
1153
+
1156 void buildCanopy( const BeanParameters &params );
+
1157
+
1159
+
1167 void buildGround( const helios::vec3 &ground_origin, const helios::vec2 &ground_extent, const helios::int2 &texture_subtiles, const helios::int2 &texture_subpatches, const char* ground_texture_file );
1168
-
1175 std::vector<std::vector<uint> > addGrapeCluster( helios::vec3 position, float grape_rad, float cluster_rad, helios::RGBcolor grape_color, uint grape_subdiv );
-
1176
-
1178
-
1183uint grapevineVSP(const VSPGrapevineParameters &params, const helios::vec3 &origin );
-
1184
-
1186
-
1191uint grapevineSplit( const SplitGrapevineParameters &params, const helios::vec3 &origin );
-
1192
+
1170
+
1178 void buildGround( const helios::vec3 &ground_origin, const helios::vec2 &ground_extent, const helios::int2 &texture_subtiles, const helios::int2 &texture_subpatches, const char* ground_texture_file, float ground_rotation );
+
1179
+
1181
+
1184 std::vector<uint> getTrunkUUIDs( uint PlantID );
+
1185
+
1187 std::vector<uint> getTrunkUUIDs();
+
1188
+
1190
+
1193 std::vector<uint> getBranchUUIDs( uint PlantID );
1194
-
1199uint grapevineUnilateral( const UnilateralGrapevineParameters &params, const helios::vec3 &origin );
-
1200
-
1202
-
1207uint grapevineGoblet( const GobletGrapevineParameters &params, const helios::vec3 &origin );
-
1208
-
1210
-
1215 uint whitespruce( const WhiteSpruceCanopyParameters &params, const helios::vec3 &origin );
-
1216
-
1218
-
1223 uint tomato( const TomatoParameters &params, const helios::vec3 &origin );
-
1224
+
1196 std::vector<uint> getBranchUUIDs();
+
1197
+
1199
+
1203 std::vector<std::vector<uint> > getLeafUUIDs( uint PlantID );
+
1204
+
1206 std::vector<uint> getLeafUUIDs();
+
1207
+
1209
+
1213 std::vector<std::vector<std::vector<uint> > > getFruitUUIDs( uint PlantID );
+
1214
+
1216 std::vector<uint> getFruitUUIDs();
+
1217
+
1219 std::vector<uint> getGroundUUIDs();
+
1220
+
1222
+
1225 std::vector<uint> getAllUUIDs( uint PlantID );
1226
-
1231 uint strawberry( const StrawberryParameters &params, const helios::vec3 &origin );
-
1232
-
1234
-
1239 uint walnut(const WalnutCanopyParameters &params, const helios::vec3 &origin );
-
1240
-
1242
-
1247 uint sorghum( const SorghumCanopyParameters &params, const helios::vec3 &origin);
-
1248
-
1250
-
1255 uint bean( const BeanParameters &params, const helios::vec3 &origin );
-
1256
-
1258 void createElementLabels();
-
1259
-
1261 void disableElementLabels();
+
1228 uint getPlantCount();
+
1229
+
1231
+
1234 void seedRandomGenerator( uint seed );
+
1235
+
1237 void disableMessages();
+
1238
+
1240 void enableMessages();
+
1241
+
1242 //---------- PLANT GEOMETRIES ------------ //
+
1243
+
1245
+
1248 void buildIndividualPlants(helios::vec3 position);
+
1249
+
1251 void buildIndividualPlants();
+
1252
+
1254
+
1261 std::vector<std::vector<uint> > addGrapeCluster( helios::vec3 position, float grape_rad, float cluster_rad, helios::RGBcolor grape_color, uint grape_subdiv );
1262
-
1263 private:
1264
-
1265 helios::Context* context;
-
1266
-
1268
-
1271 std::vector<std::vector<uint> > UUID_trunk;
+
1269uint grapevineVSP(const VSPGrapevineParameters &params, const helios::vec3 &origin );
+
1270
1272
-
1274
-
1277 std::vector<std::vector<uint> > UUID_branch;
+
1277uint grapevineSplit( const SplitGrapevineParameters &params, const helios::vec3 &origin );
1278
1280
-
1283 std::vector<std::vector<std::vector<uint> > > UUID_leaf;
-
1284
+
1285uint grapevineUnilateral( const UnilateralGrapevineParameters &params, const helios::vec3 &origin );
1286
-
1289 std::vector<std::vector<std::vector<std::vector<uint> > > > UUID_fruit;
-
1290
-
1292 std::vector<uint> UUID_ground;
-
1293
-
1294 std::vector<uint> leaf_prototype_global;
-
1295
-
1296 float sampleLeafAngle( const std::vector<float> &leafAngleDist );
-
1297
-
1298 float sampleLeafPDF( const char* distribution );
-
1299
-
1300 std::minstd_rand0 generator;
-
1301
-
1302 bool printmessages;
-
1303
-
1304 bool enable_element_labels;
-
1305
-
1306 void cleanDeletedUUIDs( std::vector<uint> &UUIDs );
-
1307
-
1308 void cleanDeletedUUIDs( std::vector<std::vector<uint> > &UUIDs );
-
1309
-
1310 void cleanDeletedUUIDs( std::vector<std::vector<std::vector<uint> > > &UUIDs );
-
1311
-
1312};
-
-
1313
-
1315
-
1319float getVariation( float V, std::minstd_rand0& generator );
+
1288
+
1293uint grapevineGoblet( const GobletGrapevineParameters &params, const helios::vec3 &origin );
+
1294
+
1296
+
1301 uint whitespruce( const WhiteSpruceCanopyParameters &params, const helios::vec3 &origin );
+
1302
+
1304
+
1309 uint tomato( const TomatoParameters &params, const helios::vec3 &origin );
+
1310
+
1312
+
1317 uint strawberry( const StrawberryParameters &params, const helios::vec3 &origin );
+
1318
1320
-
1322
-
1326helios::vec3 interpolateTube( const std::vector<helios::vec3> &P, float frac );
-
1327
-
1329
-
1333float interpolateTube( const std::vector<float> &P, float frac );
+
1325 uint walnut(const WalnutCanopyParameters &params, const helios::vec3 &origin );
+
1326
+
1328
+
1333 uint sorghum( const SorghumCanopyParameters &params, const helios::vec3 &origin);
1334
1336
-
1341float evaluateCDFresid(float thetaL, std::vector<float> &ru_v, const void *a_distribution);
+
1341 uint bean( const BeanParameters &params, const helios::vec3 &origin );
1342
-
1343#endif //CANOPY_GENERATOR
-
evaluateCDFresid
float evaluateCDFresid(float thetaL, std::vector< float > &ru_v, const void *a_distribution)
Evaluate the error between a predicted and actual leaf angle cumulative distribution at a given leaf ...
Definition CanopyGenerator.cpp:3055
-
interpolateTube
helios::vec3 interpolateTube(const std::vector< helios::vec3 > &P, float frac)
Interpolate the position of a point along a tube.
Definition CanopyGenerator.cpp:2985
-
getVariation
float getVariation(float V, std::minstd_rand0 &generator)
Draw a random number from a uniform distribution between -V and V.
Definition CanopyGenerator.cpp:2775
+
1344 void createElementLabels();
+
1345
+
1347 void disableElementLabels();
+
1348
+
1349 private:
+
1350
+
1351 helios::Context* context;
+
1352
+
1354 std::vector<std::shared_ptr<BaseCanopyParameters>> canopy_parameters_list;
+
1355
+
1357
+
1360 std::vector<std::vector<uint> > UUID_trunk;
+
1361
+
1363
+
1366 std::vector<std::vector<uint> > UUID_branch;
+
1367
+
1369
+
1372 std::vector<std::vector<std::vector<uint> > > UUID_leaf;
+
1373
+
1375
+
1378 std::vector<std::vector<std::vector<std::vector<uint> > > > UUID_fruit;
+
1379
+
1381 std::vector<uint> UUID_ground;
+
1382
+
1383 std::vector<uint> leaf_prototype_global;
+
1384
+
1385 float sampleLeafAngle( const std::vector<float> &leafAngleDist );
+
1386
+
1387 float sampleLeafPDF( const char* distribution );
+
1388
+
1389 std::minstd_rand0 generator;
+
1390
+
1391 bool printmessages;
+
1392
+
1393 bool enable_element_labels;
+
1394
+
1395 void cleanDeletedUUIDs( std::vector<uint> &UUIDs );
+
1396
+
1397 void cleanDeletedUUIDs( std::vector<std::vector<uint> > &UUIDs );
+
1398
+
1399 void cleanDeletedUUIDs( std::vector<std::vector<std::vector<uint> > > &UUIDs );
+
1400
+
1401};
+
+
1402
+
1404
+
1408float getVariation( float V, std::minstd_rand0& generator );
+
1409
+
1411
+
1415helios::vec3 interpolateTube( const std::vector<helios::vec3> &P, float frac );
+
1416
+
1418
+
1422float interpolateTube( const std::vector<float> &P, float frac );
+
1423
+
1425
+
1430float evaluateCDFresid(float thetaL, std::vector<float> &ru_v, const void *a_distribution);
+
1431
+
1432#endif //CANOPY_GENERATOR
+
evaluateCDFresid
float evaluateCDFresid(float thetaL, std::vector< float > &ru_v, const void *a_distribution)
Evaluate the error between a predicted and actual leaf angle cumulative distribution at a given leaf ...
Definition CanopyGenerator.cpp:3296
+
interpolateTube
helios::vec3 interpolateTube(const std::vector< helios::vec3 > &P, float frac)
Interpolate the position of a point along a tube.
Definition CanopyGenerator.cpp:3226
+
getVariation
float getVariation(float V, std::minstd_rand0 &generator)
Draw a random number from a uniform distribution between -V and V.
Definition CanopyGenerator.cpp:3003
- +
CanopyGenerator::whitespruce
uint whitespruce(const WhiteSpruceCanopyParameters &params, const helios::vec3 &origin)
Function to add an individual white spruce tree.
Definition whitespruce.cpp:6
-
CanopyGenerator::buildCanopy
void buildCanopy(const HomogeneousCanopyParameters &params)
Build a canopy consisting of a homogeneous volume of leaves.
Definition CanopyGenerator.cpp:2151
+
CanopyGenerator::buildCanopy
void buildCanopy(const HomogeneousCanopyParameters &params)
Build a canopy consisting of a homogeneous volume of leaves.
Definition CanopyGenerator.cpp:2339
+
CanopyGenerator::storeCanopyParameters
void storeCanopyParameters(Args &&... args)
Stores the given canopy parameters.
Definition CanopyGenerator.cpp:2054
CanopyGenerator::sorghum
uint sorghum(const SorghumCanopyParameters &params, const helios::vec3 &origin)
Function to add an individual sorghum plant.
Definition sorghum.cpp:8
-
CanopyGenerator::enableMessages
void enableMessages()
Enable standard messages to be printed to screen (default is to enable messages)
Definition CanopyGenerator.cpp:2981
-
CanopyGenerator::getTrunkUUIDs
std::vector< uint > getTrunkUUIDs()
Get the unique universal identifiers (UUIDs) for all trunk primitives in a single 1D vector.
Definition CanopyGenerator.cpp:2864
+
CanopyGenerator::enableMessages
void enableMessages()
Enable standard messages to be printed to screen (default is to enable messages)
Definition CanopyGenerator.cpp:3209
+
CanopyGenerator::getTrunkUUIDs
std::vector< uint > getTrunkUUIDs()
Get the unique universal identifiers (UUIDs) for all trunk primitives in a single 1D vector.
Definition CanopyGenerator.cpp:3092
CanopyGenerator::tomato
uint tomato(const TomatoParameters &params, const helios::vec3 &origin)
Function to add an individual tomato plant.
Definition tomato.cpp:139
-
CanopyGenerator::buildGround
void buildGround(const helios::vec3 &ground_origin, const helios::vec2 &ground_extent, const helios::int2 &texture_subtiles, const helios::int2 &texture_subpatches, const char *ground_texture_file)
Build a ground consisting of texture sub-tiles and sub-patches, which can be different sizes.
Definition CanopyGenerator.cpp:2113
+
CanopyGenerator::buildGround
void buildGround(const helios::vec3 &ground_origin, const helios::vec2 &ground_extent, const helios::int2 &texture_subtiles, const helios::int2 &texture_subpatches, const char *ground_texture_file)
Build a ground consisting of texture sub-tiles and sub-patches, which can be different sizes.
Definition CanopyGenerator.cpp:2295
CanopyGenerator::strawberry
uint strawberry(const StrawberryParameters &params, const helios::vec3 &origin)
Function to add an individual strawberry plant.
Definition strawberry.cpp:215
CanopyGenerator::addGrapeCluster
std::vector< std::vector< uint > > addGrapeCluster(helios::vec3 position, float grape_rad, float cluster_rad, helios::RGBcolor grape_color, uint grape_subdiv)
Function to add an individual grape berry cluster.
Definition grapevine.cpp:21
-
CanopyGenerator::getGroundUUIDs
std::vector< uint > getGroundUUIDs()
Get the unique universal identifiers (UUIDs) for the primitives that make up the ground.
Definition CanopyGenerator.cpp:2927
-
CanopyGenerator::loadXML
void loadXML(const char *filename)
Build canopy geometries based on parameters specified in an XML file.
Definition CanopyGenerator.cpp:783
-
CanopyGenerator::getLeafUUIDs
std::vector< uint > getLeafUUIDs()
Get the unique universal identifiers (UUIDs) for all leaf primitives in a single 1D vector.
Definition CanopyGenerator.cpp:2897
-
CanopyGenerator::getBranchUUIDs
std::vector< uint > getBranchUUIDs()
Get the unique universal identifiers (UUIDs) for all branch primitives in a single 1D vector.
Definition CanopyGenerator.cpp:2881
-
CanopyGenerator::grapevineSplit
uint grapevineSplit(const SplitGrapevineParameters &params, const helios::vec3 &origin)
Function to add an individual grapevine plant on a split trellis.
Definition grapevine.cpp:429
-
CanopyGenerator::getAllUUIDs
std::vector< uint > getAllUUIDs(uint PlantID)
Get the unique universal identifiers (UUIDs) for all primitives that make up the tree.
Definition CanopyGenerator.cpp:2943
-
CanopyGenerator::grapevineGoblet
uint grapevineGoblet(const GobletGrapevineParameters &params, const helios::vec3 &origin)
Function to add an individual grapevine plant on a goblet (vent a taille) trellis.
Definition grapevine.cpp:959
-
CanopyGenerator::disableElementLabels
void disableElementLabels()
Toggle off primitive data element type labels.
Definition CanopyGenerator.cpp:3109
-
CanopyGenerator::grapevineUnilateral
uint grapevineUnilateral(const UnilateralGrapevineParameters &params, const helios::vec3 &origin)
Function to add an individual grapevine plant on a unilateral trellis.
Definition grapevine.cpp:759
-
CanopyGenerator::disableMessages
void disableMessages()
Disable standard messages from being printed to screen (default is to enable messages)
Definition CanopyGenerator.cpp:2977
+
CanopyGenerator::getGroundUUIDs
std::vector< uint > getGroundUUIDs()
Get the unique universal identifiers (UUIDs) for the primitives that make up the ground.
Definition CanopyGenerator.cpp:3155
+
CanopyGenerator::getLeafUUIDs
std::vector< uint > getLeafUUIDs()
Get the unique universal identifiers (UUIDs) for all leaf primitives in a single 1D vector.
Definition CanopyGenerator.cpp:3125
+
CanopyGenerator::getBranchUUIDs
std::vector< uint > getBranchUUIDs()
Get the unique universal identifiers (UUIDs) for all branch primitives in a single 1D vector.
Definition CanopyGenerator.cpp:3109
+
CanopyGenerator::buildCanopies
void buildCanopies()
Builds canopies for all the stored canopy parameters.
Definition CanopyGenerator.cpp:2333
+
CanopyGenerator::grapevineSplit
uint grapevineSplit(const SplitGrapevineParameters &params, const helios::vec3 &origin)
Function to add an individual grapevine plant on a split trellis.
Definition grapevine.cpp:463
+
CanopyGenerator::getAllUUIDs
std::vector< uint > getAllUUIDs(uint PlantID)
Get the unique universal identifiers (UUIDs) for all primitives that make up the tree.
Definition CanopyGenerator.cpp:3171
+
CanopyGenerator::grapevineGoblet
uint grapevineGoblet(const GobletGrapevineParameters &params, const helios::vec3 &origin)
Function to add an individual grapevine plant on a goblet (vent a taille) trellis.
Definition grapevine.cpp:1064
+
CanopyGenerator::disableElementLabels
void disableElementLabels()
Toggle off primitive data element type labels.
Definition CanopyGenerator.cpp:3350
+
CanopyGenerator::loadXML
void loadXML(const char *filename, bool build=true)
Reads the XML file of the given name and stores all the configured canopy parameters.
Definition CanopyGenerator.cpp:2067
+
CanopyGenerator::grapevineUnilateral
uint grapevineUnilateral(const UnilateralGrapevineParameters &params, const helios::vec3 &origin)
Function to add an individual grapevine plant on a unilateral trellis.
Definition grapevine.cpp:829
+
CanopyGenerator::disableMessages
void disableMessages()
Disable standard messages from being printed to screen (default is to enable messages)
Definition CanopyGenerator.cpp:3205
CanopyGenerator::grapevineVSP
uint grapevineVSP(const VSPGrapevineParameters &params, const helios::vec3 &origin)
Function to add an individual grapevine plant on a vertical shoot positioned (VSP) trellis.
Definition grapevine.cpp:149
-
CanopyGenerator::getPlantCount
uint getPlantCount()
Get the current number of plants added to the Canopy Generator.
Definition CanopyGenerator.cpp:2969
-
CanopyGenerator::getFruitUUIDs
std::vector< uint > getFruitUUIDs()
Get the unique universal identifiers (UUIDs) for all fruit primitives in a single 1D vector.
Definition CanopyGenerator.cpp:2914
-
CanopyGenerator::CanopyGenerator
CanopyGenerator(helios::Context *context)
Canopy geometry generator constructor.
Definition CanopyGenerator.cpp:622
-
CanopyGenerator::seedRandomGenerator
void seedRandomGenerator(uint seed)
Seed the random number generator. This can be useful for generating repeatable trees,...
Definition CanopyGenerator.cpp:2973
+
CanopyGenerator::getPlantCount
uint getPlantCount()
Get the current number of plants added to the Canopy Generator.
Definition CanopyGenerator.cpp:3197
+
CanopyGenerator::getFruitUUIDs
std::vector< uint > getFruitUUIDs()
Get the unique universal identifiers (UUIDs) for all fruit primitives in a single 1D vector.
Definition CanopyGenerator.cpp:3142
+
CanopyGenerator::CanopyGenerator
CanopyGenerator(helios::Context *context)
Canopy geometry generator constructor.
Definition CanopyGenerator.cpp:1892
+
CanopyGenerator::seedRandomGenerator
void seedRandomGenerator(uint seed)
Seed the random number generator. This can be useful for generating repeatable trees,...
Definition CanopyGenerator.cpp:3201
CanopyGenerator::bean
uint bean(const BeanParameters &params, const helios::vec3 &origin)
Function to add an individual bean plant.
Definition bean.cpp:295
-
CanopyGenerator::createElementLabels
void createElementLabels()
Create primitive data that explicitly labels all primitives according to the plant element they corre...
Definition CanopyGenerator.cpp:3105
-
CanopyGenerator::selfTest
int selfTest()
Unit testing routine.
Definition CanopyGenerator.cpp:636
+
CanopyGenerator::buildIndividualPlants
void buildIndividualPlants()
Builds individual plants based on the stored canopy parameters (using canopy_origin as the position)
Definition CanopyGenerator.cpp:3219
+
CanopyGenerator::createElementLabels
void createElementLabels()
Create primitive data that explicitly labels all primitives according to the plant element they corre...
Definition CanopyGenerator.cpp:3346
+
CanopyGenerator::selfTest
int selfTest()
Unit testing routine.
Definition CanopyGenerator.cpp:1906
CanopyGenerator::walnut
uint walnut(const WalnutCanopyParameters &params, const helios::vec3 &origin)
Function to add an individual walnut tree.
Definition walnut.cpp:333
helios::Context
Stores the state associated with simulation.
Definition Context.h:1882
-
BeanParameters
Parameters defining the bean plant canopy.
Definition CanopyGenerator.h:927
-
BeanParameters::plant_spacing
float plant_spacing
Spacing between adjacent plants along the row direction.
Definition CanopyGenerator.h:957
-
BeanParameters::leaflet_length
float leaflet_length
Length of the leaflet from base to tip leaf.
Definition CanopyGenerator.h:954
-
BeanParameters::pod_length
float pod_length
Length of bean pods.
Definition CanopyGenerator.h:975
-
BeanParameters::leaf_length
float leaf_length
Maximum width of leaves.
Definition CanopyGenerator.h:933
-
BeanParameters::BeanParameters
BeanParameters()
Default constructor.
Definition CanopyGenerator.cpp:584
-
BeanParameters::shoot_subdivisions
int shoot_subdivisions
Number of radial subdivisions for shoot tubes.
Definition CanopyGenerator.h:945
-
BeanParameters::pod_color
helios::RGBcolor pod_color
Color of bean pods.
Definition CanopyGenerator.h:978
-
BeanParameters::leaf_subdivisions
helios::int2 leaf_subdivisions
Number of sub-division segments per leaf.
Definition CanopyGenerator.h:936
-
BeanParameters::canopy_origin
helios::vec3 canopy_origin
Cartesian (x,y,z) coordinate of the bottom center point of the canopy (i.e., specifying z=0 places th...
Definition CanopyGenerator.h:969
-
BeanParameters::stem_length
float stem_length
Length of stems before splitting to leaflets.
Definition CanopyGenerator.h:951
-
BeanParameters::canopy_rotation
float canopy_rotation
Azimuthal rotation of the canopy about the canopy origin. Note that if canopy_rotation is not equal t...
Definition CanopyGenerator.h:972
-
BeanParameters::pod_subdivisions
uint pod_subdivisions
Number of lengthwise subdivisions making up pods.
Definition CanopyGenerator.h:981
-
BeanParameters::stem_radius
float stem_radius
Radius of main stem at base.
Definition CanopyGenerator.h:948
-
BeanParameters::germination_probability
float germination_probability
Probability that a plant in the canopy germinated.
Definition CanopyGenerator.h:966
-
BeanParameters::leaf_texture_file
std::string leaf_texture_file
Path to texture map file for leaves.
Definition CanopyGenerator.h:939
-
BeanParameters::shoot_color
helios::RGBcolor shoot_color
Color of shoots.
Definition CanopyGenerator.h:942
-
BeanParameters::row_spacing
float row_spacing
Spacing between plant rows.
Definition CanopyGenerator.h:960
-
BeanParameters::plant_count
helios::int2 plant_count
Number of crowns/plants in the x- and y-directions.
Definition CanopyGenerator.h:963
-
ConicalCrownsCanopyParameters
Parameters defining the canopy with conical crowns.
Definition CanopyGenerator.h:111
-
ConicalCrownsCanopyParameters::plant_count
helios::int2 plant_count
Number of crowns/plants in the x- and y-directions.
Definition CanopyGenerator.h:147
-
ConicalCrownsCanopyParameters::leaf_angle_distribution
std::string leaf_angle_distribution
Leaf angle distribution - one of "spherical", "uniform", "erectophile", "planophile",...
Definition CanopyGenerator.h:129
-
ConicalCrownsCanopyParameters::canopy_rotation
float canopy_rotation
Azimuthal rotation of the canopy about the canopy origin. Note that if canopy_rotation is not equal t...
Definition CanopyGenerator.h:153
-
ConicalCrownsCanopyParameters::ConicalCrownsCanopyParameters
ConicalCrownsCanopyParameters()
Default constructor.
Definition CanopyGenerator.cpp:69
-
ConicalCrownsCanopyParameters::leaf_subdivisions
helios::int2 leaf_subdivisions
Number of sub-division segments per leaf.
Definition CanopyGenerator.h:120
-
ConicalCrownsCanopyParameters::leaf_color
helios::RGBcolor leaf_color
Leaf color if no texture map file is provided.
Definition CanopyGenerator.h:126
-
ConicalCrownsCanopyParameters::leaf_texture_file
std::string leaf_texture_file
Path to texture map file for leaves. If left empty, no texture will be used.
Definition CanopyGenerator.h:123
-
ConicalCrownsCanopyParameters::crown_height
float crown_height
Height of the conical crowns.
Definition CanopyGenerator.h:138
-
ConicalCrownsCanopyParameters::plant_spacing
helios::vec2 plant_spacing
Spacing between adjacent crowns in the x- and y-directions. Note that if canopy_configuration='random...
Definition CanopyGenerator.h:144
-
ConicalCrownsCanopyParameters::canopy_configuration
std::string canopy_configuration
Specifies whether to use a uniformly spaced canopy (canopy_configuration="uniform") or a randomly arr...
Definition CanopyGenerator.h:141
-
ConicalCrownsCanopyParameters::leaf_size
helios::vec2 leaf_size
Length of leaf in x- and y- directions (prior to rotation)
Definition CanopyGenerator.h:117
-
ConicalCrownsCanopyParameters::crown_radius
float crown_radius
Radius of the conical crowns at the base.
Definition CanopyGenerator.h:135
-
ConicalCrownsCanopyParameters::canopy_origin
helios::vec3 canopy_origin
Cartesian (x,y,z) coordinate of the bottom center point of the canopy (i.e., specifying z=0 places th...
Definition CanopyGenerator.h:150
-
ConicalCrownsCanopyParameters::leaf_area_density
float leaf_area_density
One-sided leaf area density within spherical crowns.
Definition CanopyGenerator.h:132
-
GobletGrapevineParameters
Parameters defining the grapevine canopy with goblet (vent a taille) trellis.
Definition CanopyGenerator.h:411
-
GobletGrapevineParameters::GobletGrapevineParameters
GobletGrapevineParameters()
Default constructor.
Definition CanopyGenerator.cpp:253
-
GobletGrapevineParameters::leaf_texture_file
std::string leaf_texture_file
Path to texture map file for leaves.
Definition CanopyGenerator.h:423
-
GobletGrapevineParameters::cordon_radius
float cordon_radius
Radius of cordon branches.
Definition CanopyGenerator.h:447
-
GobletGrapevineParameters::cluster_radius
float cluster_radius
Maximum horizontal radius of grape clusters.
Definition CanopyGenerator.h:474
-
GobletGrapevineParameters::shoots_per_cordon
uint shoots_per_cordon
Number of shoots on each cordon.
Definition CanopyGenerator.h:456
-
GobletGrapevineParameters::leaf_spacing_fraction
float leaf_spacing_fraction
Spacing between adjacent leaves as a fraction of the local leaf width. E.g., leaf_spacing_fraction = ...
Definition CanopyGenerator.h:459
-
GobletGrapevineParameters::row_spacing
float row_spacing
Spacing between plant rows.
Definition CanopyGenerator.h:435
-
GobletGrapevineParameters::wood_subdivisions
int wood_subdivisions
Number of radial subdivisions for trunk/cordon/shoot tubes.
Definition CanopyGenerator.h:429
-
GobletGrapevineParameters::leaf_subdivisions
helios::int2 leaf_subdivisions
Number of sub-division segments per leaf.
Definition CanopyGenerator.h:420
-
GobletGrapevineParameters::shoot_length
float shoot_length
Length of shoots.
Definition CanopyGenerator.h:450
-
GobletGrapevineParameters::canopy_origin
helios::vec3 canopy_origin
Cartesian (x,y,z) coordinate of the bottom center point of the canopy (i.e., specifying z=0 places th...
Definition CanopyGenerator.h:465
-
GobletGrapevineParameters::shoot_radius
float shoot_radius
Radius of shoot branches.
Definition CanopyGenerator.h:453
-
GobletGrapevineParameters::grape_subdivisions
uint grape_subdivisions
Number of azimuthal and zenithal subdivisions making up berries (will result in roughly grape_subdivi...
Definition CanopyGenerator.h:483
-
GobletGrapevineParameters::grape_color
helios::RGBcolor grape_color
Color of grapes.
Definition CanopyGenerator.h:480
-
GobletGrapevineParameters::grape_radius
float grape_radius
Radius of grape berries.
Definition CanopyGenerator.h:471
-
GobletGrapevineParameters::trunk_radius
float trunk_radius
Radius of the trunk at the widest point.
Definition CanopyGenerator.h:441
-
GobletGrapevineParameters::wood_texture_file
std::string wood_texture_file
Path to texture map file for trunks/branches.
Definition CanopyGenerator.h:426
-
GobletGrapevineParameters::plant_count
helios::int2 plant_count
Number of crowns/plants in the x- and y-directions.
Definition CanopyGenerator.h:462
-
GobletGrapevineParameters::cluster_height_max
float cluster_height_max
Maximum height of grape clusters along the shoot as a fraction of the total shoot length.
Definition CanopyGenerator.h:477
-
GobletGrapevineParameters::plant_spacing
float plant_spacing
Spacing between adjacent plants along the row direction.
Definition CanopyGenerator.h:432
-
GobletGrapevineParameters::trunk_height
float trunk_height
Distance between the ground and top of trunks.
Definition CanopyGenerator.h:438
-
GobletGrapevineParameters::cordon_height
float cordon_height
Distance between the ground and cordon. Note - must be greater than or equal to the trunk height.
Definition CanopyGenerator.h:444
-
GobletGrapevineParameters::leaf_width
float leaf_width
Maximum width of leaves. Leaf width increases logarithmically from the shoot tip, so leaf_width is th...
Definition CanopyGenerator.h:417
-
GobletGrapevineParameters::canopy_rotation
float canopy_rotation
Azimuthal rotation of the canopy about the canopy origin. Note that if canopy_rotation is not equal t...
Definition CanopyGenerator.h:468
-
HomogeneousCanopyParameters
Parameters defining the homogeneous canopy.
Definition CanopyGenerator.h:23
-
HomogeneousCanopyParameters::canopy_origin
helios::vec3 canopy_origin
Cartesian (x,y,z) coordinate of the bottom center point of the canopy (i.e., specifying z=0 places th...
Definition CanopyGenerator.h:53
-
HomogeneousCanopyParameters::buffer
std::string buffer
String specifying whether leaves should be placed so that leaf edges do not fall outside the specifie...
Definition CanopyGenerator.h:59
-
HomogeneousCanopyParameters::leaf_size
helios::vec2 leaf_size
Length of leaf in x- and y- directions (prior to rotation)
Definition CanopyGenerator.h:29
-
HomogeneousCanopyParameters::leaf_color
helios::RGBcolor leaf_color
Leaf color if no texture map file is provided.
Definition CanopyGenerator.h:38
-
HomogeneousCanopyParameters::canopy_extent
helios::vec2 canopy_extent
Horizontal extent of the canopy in the x- and y-directions.
Definition CanopyGenerator.h:50
-
HomogeneousCanopyParameters::leaf_subdivisions
helios::int2 leaf_subdivisions
Number of sub-division segments per leaf.
Definition CanopyGenerator.h:32
-
HomogeneousCanopyParameters::canopy_height
float canopy_height
Height of the canopy.
Definition CanopyGenerator.h:47
-
HomogeneousCanopyParameters::leaf_angle_distribution
std::string leaf_angle_distribution
Leaf angle distribution - one of "spherical", "uniform", "erectophile", "planophile",...
Definition CanopyGenerator.h:41
-
HomogeneousCanopyParameters::HomogeneousCanopyParameters
HomogeneousCanopyParameters()
Default constructor.
Definition CanopyGenerator.cpp:21
-
HomogeneousCanopyParameters::leaf_texture_file
std::string leaf_texture_file
Path to texture map file for leaves. If left empty, no texture will be used.
Definition CanopyGenerator.h:35
-
HomogeneousCanopyParameters::leaf_area_index
float leaf_area_index
One-sided leaf area index of the canopy.
Definition CanopyGenerator.h:44
-
SorghumCanopyParameters
Parameters defining Sorghum plant canopy.
Definition CanopyGenerator.h:722
-
SorghumCanopyParameters::s5_stem_subdivisions
int s5_stem_subdivisions
Number of stem radial subdivisions for stage 5.
Definition CanopyGenerator.h:885
-
SorghumCanopyParameters::s2_stem_subdivisions
float s2_stem_subdivisions
Number of stem radial subdivisions for stage 2.
Definition CanopyGenerator.h:774
-
SorghumCanopyParameters::s1_leaf1_angle
float s1_leaf1_angle
Leaf1 vertical angle of rotation for stage 1.
Definition CanopyGenerator.h:751
-
SorghumCanopyParameters::s5_stem_length
float s5_stem_length
Length of the sorghum stem for stage 5.
Definition CanopyGenerator.h:876
-
SorghumCanopyParameters::s4_seed_texture_file
std::string s4_seed_texture_file
Texture map of the panicle for stage 4.
Definition CanopyGenerator.h:856
-
SorghumCanopyParameters::s5_number_of_leaves
int s5_number_of_leaves
Number of leaves for the sorghum plant, stage 5.
Definition CanopyGenerator.h:903
-
SorghumCanopyParameters::s5_mean_leaf_angle
float s5_mean_leaf_angle
Mean vertical angle of rotation of leaf for stage 5 in degrees; Standard deviation for the angle is 1...
Definition CanopyGenerator.h:906
-
SorghumCanopyParameters::s4_stem_length
float s4_stem_length
Length of the sorghum stem for stage 4.
Definition CanopyGenerator.h:841
-
SorghumCanopyParameters::s3_leaf_subdivisions
helios::int2 s3_leaf_subdivisions
Number of sub-division segments of leaf in the x- (length) and y- (width) direction for stage 3.
Definition CanopyGenerator.h:827
-
SorghumCanopyParameters::s1_leaf_texture_file
std::string s1_leaf_texture_file
Texture map for sorghum leaf1 for stage 1.
Definition CanopyGenerator.h:763
-
SorghumCanopyParameters::s1_leaf_size2
helios::vec2 s1_leaf_size2
Length of leaf2 in x- (length) and y- (width) directions (prior to rotation) for stage 1.
Definition CanopyGenerator.h:745
-
SorghumCanopyParameters::s4_stem_radius
float s4_stem_radius
Radius of the sorghum stem for stage 4.
Definition CanopyGenerator.h:844
-
SorghumCanopyParameters::s3_mean_leaf_angle
float s3_mean_leaf_angle
Mean vertical angle of rotation of leaf for stage 3 in degrees; Standard deviation for the leaves is ...
Definition CanopyGenerator.h:833
-
SorghumCanopyParameters::s4_stem_subdivisions
float s4_stem_subdivisions
Number of stem radial subdivisions for stage 4.
Definition CanopyGenerator.h:847
-
SorghumCanopyParameters::s2_leaf1_angle
float s2_leaf1_angle
Leaf1 vertical angle of rotation for stage 2.
Definition CanopyGenerator.h:792
-
SorghumCanopyParameters::s2_leaf_texture_file
std::string s2_leaf_texture_file
Texture map for sorghum leaf for stage 2.
Definition CanopyGenerator.h:810
-
SorghumCanopyParameters::s5_panicle_subdivisions
int s5_panicle_subdivisions
Number of panicle subdivisions for each grain sphere within a panicle, stage 5.
Definition CanopyGenerator.h:891
-
SorghumCanopyParameters::s2_leaf4_angle
float s2_leaf4_angle
Leaf4 vertical angle of rotation for stage 2.
Definition CanopyGenerator.h:801
-
SorghumCanopyParameters::s4_mean_leaf_angle
float s4_mean_leaf_angle
Mean vertical angle of rotation of leaf for stage 4 in degrees; Standard deviation for the angle is 5...
Definition CanopyGenerator.h:868
-
SorghumCanopyParameters::s2_leaf5_angle
float s2_leaf5_angle
Leaf5 vertical angle of rotation for stage 2.
Definition CanopyGenerator.h:804
-
SorghumCanopyParameters::s2_leaf_subdivisions
helios::int2 s2_leaf_subdivisions
Number of sub-division segments of leaf in the x- (length) and y- (width) direction for stage 2.
Definition CanopyGenerator.h:807
-
SorghumCanopyParameters::plant_spacing
float plant_spacing
Spacing between adjacent plants along the row direction.
Definition CanopyGenerator.h:913
-
SorghumCanopyParameters::canopy_origin
helios::vec3 canopy_origin
Cartesian (x,y,z) coordinate of the bottom center point of the canopy (i.e., specifying z=0 places th...
Definition CanopyGenerator.h:922
-
SorghumCanopyParameters::s4_leaf_size
helios::vec2 s4_leaf_size
Length of leaf in x- (length) and y- (width) directions (prior to rotation) for stage 4.
Definition CanopyGenerator.h:859
-
SorghumCanopyParameters::s2_leaf3_angle
float s2_leaf3_angle
Leaf3 vertical angle of rotation for stage 2.
Definition CanopyGenerator.h:798
-
SorghumCanopyParameters::s4_leaf_subdivisions
helios::int2 s4_leaf_subdivisions
Number of sub-division segments of leaf in the x- (length) and y- (width) direction for stage 4.
Definition CanopyGenerator.h:862
-
SorghumCanopyParameters::s2_stem_radius
float s2_stem_radius
Radius of the sorghum stem for stage 2.
Definition CanopyGenerator.h:771
-
SorghumCanopyParameters::SorghumCanopyParameters
SorghumCanopyParameters()
Default constructor.
Definition CanopyGenerator.cpp:451
-
SorghumCanopyParameters::s5_stem_bend
float s5_stem_bend
Bend of the stem from mid-section for stage 5. The distance from the mid-section of the stem to the i...
Definition CanopyGenerator.h:882
-
SorghumCanopyParameters::s1_leaf_size1
helios::vec2 s1_leaf_size1
Length of leaf1 in x- (length) and y- (width) directions (prior to rotation) for stage 1.
Definition CanopyGenerator.h:742
-
SorghumCanopyParameters::s5_stem_radius
float s5_stem_radius
Radius of the sorghum stem for stage 5.
Definition CanopyGenerator.h:879
-
SorghumCanopyParameters::plant_count
helios::int2 plant_count
Number of crowns/plants in the x- and y-directions.
Definition CanopyGenerator.h:919
-
SorghumCanopyParameters::s3_stem_radius
float s3_stem_radius
Radius of the sorghum stem for stage 3.
Definition CanopyGenerator.h:818
-
SorghumCanopyParameters::s5_leaf_texture_file
std::string s5_leaf_texture_file
Texture map for sorghum leaf, stage 5.
Definition CanopyGenerator.h:909
-
SorghumCanopyParameters::s5_leaf_subdivisions
helios::int2 s5_leaf_subdivisions
Number of sub-division segments of leaf in the x- (length) and y- (width) direction for stage 5.
Definition CanopyGenerator.h:900
-
SorghumCanopyParameters::s1_leaf_size3
helios::vec2 s1_leaf_size3
Length of leaf3 in x- (length) and y- (width) directions (prior to rotation) for stage 1.
Definition CanopyGenerator.h:748
-
SorghumCanopyParameters::s4_number_of_leaves
int s4_number_of_leaves
Number of leaves for the sorghum plant, stage 4.
Definition CanopyGenerator.h:865
-
SorghumCanopyParameters::s4_panicle_subdivisions
int s4_panicle_subdivisions
Number of panicle subdivisions for each grain sphere within a panicle, stage 4.
Definition CanopyGenerator.h:853
-
SorghumCanopyParameters::s3_stem_length
float s3_stem_length
Length of the sorghum stem for stage 3.
Definition CanopyGenerator.h:815
-
SorghumCanopyParameters::s3_leaf_texture_file
std::string s3_leaf_texture_file
Texture map for sorghum leaf for stage 3.
Definition CanopyGenerator.h:836
-
SorghumCanopyParameters::s2_leaf_size3
helios::vec2 s2_leaf_size3
Length of leaf3 in x- (length) and y- (width) directions (prior to rotation) for stage 2.
Definition CanopyGenerator.h:783
-
SorghumCanopyParameters::s1_stem_radius
float s1_stem_radius
Radius of the sorghum stem for stage 1.
Definition CanopyGenerator.h:736
-
SorghumCanopyParameters::s5_panicle_size
helios::vec2 s5_panicle_size
Size of panicle in x- and y- directions for stage 5.
Definition CanopyGenerator.h:888
-
SorghumCanopyParameters::s3_number_of_leaves
int s3_number_of_leaves
Number of leaves along the stem for stage 3.
Definition CanopyGenerator.h:830
-
SorghumCanopyParameters::s2_leaf_size5
helios::vec2 s2_leaf_size5
Length of leaf5 in x- (length) and y- (width) directions (prior to rotation) for stage 2.
Definition CanopyGenerator.h:789
-
SorghumCanopyParameters::s5_leaf_size
helios::vec2 s5_leaf_size
Length of leaf in x- (length) and y- (width) directions (prior to rotation) for stage 5.
Definition CanopyGenerator.h:897
-
SorghumCanopyParameters::s1_stem_subdivisions
float s1_stem_subdivisions
Number of stem radial subdivisions for stage 1.
Definition CanopyGenerator.h:739
-
SorghumCanopyParameters::s2_leaf_size4
helios::vec2 s2_leaf_size4
Length of leaf4 in x- (length) and y- (width) directions (prior to rotation) for stage 2.
Definition CanopyGenerator.h:786
-
SorghumCanopyParameters::s1_leaf_subdivisions
helios::int2 s1_leaf_subdivisions
Number of sub-division segments of leaf in the x- (length) and y- (width) direction for stage 1.
Definition CanopyGenerator.h:760
-
SorghumCanopyParameters::s4_leaf_texture_file
std::string s4_leaf_texture_file
Texture map for sorghum leaf, stage 4.
Definition CanopyGenerator.h:871
-
SorghumCanopyParameters::s2_leaf_size2
helios::vec2 s2_leaf_size2
Length of leaf2 in x- (length) and y- (width) directions (prior to rotation) for stage 2.
Definition CanopyGenerator.h:780
-
SorghumCanopyParameters::row_spacing
float row_spacing
Spacing between plant rows.
Definition CanopyGenerator.h:916
-
SorghumCanopyParameters::s3_leaf_size
helios::vec2 s3_leaf_size
Length of leaf in x- (length) and y- (width) directions (prior to rotation) for stage 3.
Definition CanopyGenerator.h:824
-
SorghumCanopyParameters::s2_stem_length
float s2_stem_length
Length of the sorghum stem for stage 2.
Definition CanopyGenerator.h:768
-
SorghumCanopyParameters::s1_leaf2_angle
float s1_leaf2_angle
Leaf2 vertical angle of rotation for stage 1.
Definition CanopyGenerator.h:754
-
SorghumCanopyParameters::s3_stem_subdivisions
float s3_stem_subdivisions
Number of stem radial subdivisions for stage 3.
Definition CanopyGenerator.h:821
-
SorghumCanopyParameters::s1_stem_length
float s1_stem_length
Length of the sorghum stem for stage 1.
Definition CanopyGenerator.h:733
-
SorghumCanopyParameters::sorghum_stage
int sorghum_stage
Sorghum categorized into 5 stages; 1 - Three leaf stage, 2 - Five leaf stage, 3 - Panicle initiation ...
Definition CanopyGenerator.h:728
-
SorghumCanopyParameters::s1_leaf3_angle
float s1_leaf3_angle
Leaf3 vertical angle of rotation for stage 1.
Definition CanopyGenerator.h:757
-
SorghumCanopyParameters::s2_leaf_size1
helios::vec2 s2_leaf_size1
Length of leaf1 in x- (length) and y- (width) directions (prior to rotation) for stage 2.
Definition CanopyGenerator.h:777
-
SorghumCanopyParameters::s5_seed_texture_file
std::string s5_seed_texture_file
Texture map of the panicle for stage 5.
Definition CanopyGenerator.h:894
-
SorghumCanopyParameters::s4_panicle_size
helios::vec2 s4_panicle_size
Size of panicle in x- and y- directions for stage 4.
Definition CanopyGenerator.h:850
-
SorghumCanopyParameters::s2_leaf2_angle
float s2_leaf2_angle
Leaf2 vertical angle of rotation for stage 2.
Definition CanopyGenerator.h:795
-
SphericalCrownsCanopyParameters
Parameters defining the canopy with spherical crowns.
Definition CanopyGenerator.h:64
-
SphericalCrownsCanopyParameters::crown_radius
helios::vec3 crown_radius
Radius of the spherical crowns.
Definition CanopyGenerator.h:88
-
SphericalCrownsCanopyParameters::leaf_size
helios::vec2 leaf_size
Length of leaf in x- and y- directions (prior to rotation)
Definition CanopyGenerator.h:70
-
SphericalCrownsCanopyParameters::canopy_rotation
float canopy_rotation
Azimuthal rotation of the canopy about the canopy origin. Note that if canopy_rotation is not equal t...
Definition CanopyGenerator.h:103
-
SphericalCrownsCanopyParameters::leaf_texture_file
std::string leaf_texture_file
Path to texture map file for leaves. If left empty, no texture will be used.
Definition CanopyGenerator.h:76
-
SphericalCrownsCanopyParameters::leaf_color
helios::RGBcolor leaf_color
Leaf color if no texture map file is provided.
Definition CanopyGenerator.h:79
-
SphericalCrownsCanopyParameters::plant_count
helios::int2 plant_count
Number of crowns/plants in the x- and y-directions.
Definition CanopyGenerator.h:97
-
SphericalCrownsCanopyParameters::plant_spacing
helios::vec2 plant_spacing
Spacing between adjacent crowns in the x- and y-directions. Note that if canopy_configuration='random...
Definition CanopyGenerator.h:94
-
SphericalCrownsCanopyParameters::SphericalCrownsCanopyParameters
SphericalCrownsCanopyParameters()
Default constructor.
Definition CanopyGenerator.cpp:43
-
SphericalCrownsCanopyParameters::leaf_subdivisions
helios::int2 leaf_subdivisions
Number of sub-division segments per leaf.
Definition CanopyGenerator.h:73
-
SphericalCrownsCanopyParameters::leaf_angle_distribution
std::string leaf_angle_distribution
Leaf angle distribution - one of "spherical", "uniform", "erectophile", "planophile",...
Definition CanopyGenerator.h:82
-
SphericalCrownsCanopyParameters::leaf_area_density
float leaf_area_density
One-sided leaf area density within spherical crowns.
Definition CanopyGenerator.h:85
-
SphericalCrownsCanopyParameters::canopy_configuration
std::string canopy_configuration
Specifies whether to use a uniformly spaced canopy (canopy_configuration="uniform") or a randomly arr...
Definition CanopyGenerator.h:91
-
SphericalCrownsCanopyParameters::canopy_origin
helios::vec3 canopy_origin
Cartesian (x,y,z) coordinate of the bottom center point of the canopy (i.e., specifying z=0 places th...
Definition CanopyGenerator.h:100
-
SplitGrapevineParameters
Parameters defining the grapevine canopy with a split (quad) trellis.
Definition CanopyGenerator.h:241
-
SplitGrapevineParameters::row_spacing
float row_spacing
Spacing between plant rows.
Definition CanopyGenerator.h:265
-
SplitGrapevineParameters::wood_subdivisions
int wood_subdivisions
Number of radial subdivisions for trunk/cordon/shoot tubes.
Definition CanopyGenerator.h:259
-
SplitGrapevineParameters::shoot_angle_base
float shoot_angle_base
Average angle of the shoot at the base (shoot_angle_base=0 points shoots upward; shoot_angle_base=M_P...
Definition CanopyGenerator.h:292
-
SplitGrapevineParameters::grape_radius
float grape_radius
Radius of grape berries.
Definition CanopyGenerator.h:310
-
SplitGrapevineParameters::canopy_rotation
float canopy_rotation
Azimuthal rotation of the canopy about the canopy origin. Note that if canopy_rotation is not equal t...
Definition CanopyGenerator.h:307
-
SplitGrapevineParameters::cluster_height_max
float cluster_height_max
Maximum height of grape clusters along the shoot as a fraction of the total shoot length.
Definition CanopyGenerator.h:316
-
SplitGrapevineParameters::leaf_spacing_fraction
float leaf_spacing_fraction
Spacing between adjacent leaves as a fraction of the local leaf width. E.g., leaf_spacing_fraction = ...
Definition CanopyGenerator.h:298
-
SplitGrapevineParameters::SplitGrapevineParameters
SplitGrapevineParameters()
Default constructor.
Definition CanopyGenerator.cpp:147
-
SplitGrapevineParameters::leaf_texture_file
std::string leaf_texture_file
Path to texture map file for leaves.
Definition CanopyGenerator.h:253
-
SplitGrapevineParameters::shoot_radius
float shoot_radius
Radius of shoot branches.
Definition CanopyGenerator.h:286
-
SplitGrapevineParameters::cordon_spacing
float cordon_spacing
Spacing between two opposite cordons.
Definition CanopyGenerator.h:280
-
SplitGrapevineParameters::plant_spacing
float plant_spacing
Spacing between adjacent plants along the row direction.
Definition CanopyGenerator.h:262
-
SplitGrapevineParameters::cluster_radius
float cluster_radius
Maximum horizontal radius of grape clusters.
Definition CanopyGenerator.h:313
-
SplitGrapevineParameters::grape_color
helios::RGBcolor grape_color
Color of grapes.
Definition CanopyGenerator.h:319
-
SplitGrapevineParameters::cordon_height
float cordon_height
Distance between the ground and cordon. Note - must be greater than or equal to the trunk height.
Definition CanopyGenerator.h:274
-
SplitGrapevineParameters::shoot_length
float shoot_length
Length of shoots.
Definition CanopyGenerator.h:283
-
SplitGrapevineParameters::leaf_width
float leaf_width
Maximum width of leaves. Leaf width increases logarithmically from the shoot tip, so leaf_width is th...
Definition CanopyGenerator.h:247
-
SplitGrapevineParameters::trunk_height
float trunk_height
Distance between the ground and top of trunks.
Definition CanopyGenerator.h:268
-
SplitGrapevineParameters::wood_texture_file
std::string wood_texture_file
Path to texture map file for trunks/branches.
Definition CanopyGenerator.h:256
-
SplitGrapevineParameters::grape_subdivisions
uint grape_subdivisions
Number of azimuthal and zenithal subdivisions making up berries (will result in roughly grape_subdivi...
Definition CanopyGenerator.h:322
-
SplitGrapevineParameters::trunk_radius
float trunk_radius
Radius of the trunk at the widest point.
Definition CanopyGenerator.h:271
-
SplitGrapevineParameters::plant_count
helios::int2 plant_count
Number of crowns/plants in the x- and y-directions.
Definition CanopyGenerator.h:301
-
SplitGrapevineParameters::shoots_per_cordon
uint shoots_per_cordon
Number of shoots on each cordon.
Definition CanopyGenerator.h:289
-
SplitGrapevineParameters::canopy_origin
helios::vec3 canopy_origin
Cartesian (x,y,z) coordinate of the bottom center point of the canopy (i.e., specifying z=0 places th...
Definition CanopyGenerator.h:304
-
SplitGrapevineParameters::shoot_angle_tip
float shoot_angle_tip
Average angle of the shoot at the tip (shoot_angle=0 is a completely vertical shoot; shoot_angle=M_PI...
Definition CanopyGenerator.h:295
-
SplitGrapevineParameters::leaf_subdivisions
helios::int2 leaf_subdivisions
Number of sub-division segments per leaf.
Definition CanopyGenerator.h:250
-
SplitGrapevineParameters::cordon_radius
float cordon_radius
Radius of cordon branches.
Definition CanopyGenerator.h:277
-
StrawberryParameters
Parameters defining the strawberry plant canopy.
Definition CanopyGenerator.h:606
-
StrawberryParameters::stem_subdivisions
int stem_subdivisions
Number of radial subdivisions for stem tubes.
Definition CanopyGenerator.h:624
-
StrawberryParameters::canopy_origin
helios::vec3 canopy_origin
Cartesian (x,y,z) coordinate of the bottom center point of the canopy (i.e., specifying z=0 places th...
Definition CanopyGenerator.h:645
-
StrawberryParameters::stems_per_plant
int stems_per_plant
Number of stems per plant.
Definition CanopyGenerator.h:627
-
StrawberryParameters::canopy_rotation
float canopy_rotation
Azimuthal rotation of the canopy about the canopy origin. Note that if canopy_rotation is not equal t...
Definition CanopyGenerator.h:648
-
StrawberryParameters::fruit_radius
float fruit_radius
Radius of strawberry fruit.
Definition CanopyGenerator.h:651
-
StrawberryParameters::plant_spacing
float plant_spacing
Spacing between adjacent plants along the row direction.
Definition CanopyGenerator.h:633
-
StrawberryParameters::StrawberryParameters
StrawberryParameters()
Default constructor.
Definition CanopyGenerator.cpp:377
-
StrawberryParameters::fruit_subdivisions
uint fruit_subdivisions
Number of azimuthal and zenithal subdivisions making up fruit (will result in roughly fruit_subdivisi...
Definition CanopyGenerator.h:657
-
StrawberryParameters::plant_count
helios::int2 plant_count
Number of crowns/plants in the x- and y-directions.
Definition CanopyGenerator.h:642
-
StrawberryParameters::plant_height
float plant_height
Height of the plant.
Definition CanopyGenerator.h:639
-
StrawberryParameters::leaf_subdivisions
helios::int2 leaf_subdivisions
Number of sub-division segments per leaf.
Definition CanopyGenerator.h:615
-
StrawberryParameters::fruit_texture_file
std::string fruit_texture_file
Texture map for strawberry fruit.
Definition CanopyGenerator.h:654
-
StrawberryParameters::clusters_per_stem
float clusters_per_stem
Number of strawberry clusters per plant stem. Clusters randomly have 1, 2, or 3 berries.
Definition CanopyGenerator.h:660
-
StrawberryParameters::stem_radius
float stem_radius
Radius of stems.
Definition CanopyGenerator.h:630
-
StrawberryParameters::leaf_texture_file
std::string leaf_texture_file
Path to texture map file for leaves.
Definition CanopyGenerator.h:618
-
StrawberryParameters::row_spacing
float row_spacing
Spacing between plant rows.
Definition CanopyGenerator.h:636
-
StrawberryParameters::stem_color
helios::RGBcolor stem_color
Color of stems.
Definition CanopyGenerator.h:621
-
StrawberryParameters::leaf_length
float leaf_length
Maximum width of leaves.
Definition CanopyGenerator.h:612
-
TomatoParameters
Parameters defining the tomato plant canopy.
Definition CanopyGenerator.h:556
-
TomatoParameters::shoot_subdivisions
int shoot_subdivisions
Number of radial subdivisions for shoot tubes.
Definition CanopyGenerator.h:574
-
TomatoParameters::leaf_length
float leaf_length
Maximum width of leaves.
Definition CanopyGenerator.h:562
-
TomatoParameters::fruit_color
helios::RGBcolor fruit_color
Color of tomato fruit.
Definition CanopyGenerator.h:598
-
TomatoParameters::leaf_subdivisions
helios::int2 leaf_subdivisions
Number of sub-division segments per leaf.
Definition CanopyGenerator.h:565
-
TomatoParameters::plant_count
helios::int2 plant_count
Number of crowns/plants in the x- and y-directions.
Definition CanopyGenerator.h:586
-
TomatoParameters::fruit_subdivisions
uint fruit_subdivisions
Number of azimuthal and zenithal subdivisions making up fruit (will result in roughly fruit_subdivisi...
Definition CanopyGenerator.h:601
-
TomatoParameters::canopy_rotation
float canopy_rotation
Azimuthal rotation of the canopy about the canopy origin. Note that if canopy_rotation is not equal t...
Definition CanopyGenerator.h:592
-
TomatoParameters::shoot_color
helios::RGBcolor shoot_color
Color of shoots.
Definition CanopyGenerator.h:571
-
TomatoParameters::row_spacing
float row_spacing
Spacing between plant rows.
Definition CanopyGenerator.h:580
-
TomatoParameters::plant_spacing
float plant_spacing
Spacing between adjacent plants along the row direction.
Definition CanopyGenerator.h:577
-
TomatoParameters::canopy_origin
helios::vec3 canopy_origin
Cartesian (x,y,z) coordinate of the bottom center point of the canopy (i.e., specifying z=0 places th...
Definition CanopyGenerator.h:589
-
TomatoParameters::TomatoParameters
TomatoParameters()
Default constructor.
Definition CanopyGenerator.cpp:345
-
TomatoParameters::leaf_texture_file
std::string leaf_texture_file
Path to texture map file for leaves.
Definition CanopyGenerator.h:568
-
TomatoParameters::plant_height
float plant_height
Height of the plant.
Definition CanopyGenerator.h:583
-
TomatoParameters::fruit_radius
float fruit_radius
Radius of tomato fruit.
Definition CanopyGenerator.h:595
-
UnilateralGrapevineParameters
Parameters defining the grapevine canopy with unilateral trellis.
Definition CanopyGenerator.h:330
-
UnilateralGrapevineParameters::leaf_spacing_fraction
float leaf_spacing_fraction
Spacing between adjacent leaves as a fraction of the local leaf width. E.g., leaf_spacing_fraction = ...
Definition CanopyGenerator.h:378
-
UnilateralGrapevineParameters::UnilateralGrapevineParameters
UnilateralGrapevineParameters()
Default constructor.
Definition CanopyGenerator.cpp:203
-
UnilateralGrapevineParameters::trunk_height
float trunk_height
Distance between the ground and top of trunks.
Definition CanopyGenerator.h:357
-
UnilateralGrapevineParameters::trunk_radius
float trunk_radius
Radius of the trunk at the widest point.
Definition CanopyGenerator.h:360
-
UnilateralGrapevineParameters::cluster_radius
float cluster_radius
Maximum horizontal radius of grape clusters.
Definition CanopyGenerator.h:393
-
UnilateralGrapevineParameters::shoot_length
float shoot_length
Length of shoots.
Definition CanopyGenerator.h:369
-
UnilateralGrapevineParameters::plant_spacing
float plant_spacing
Spacing between adjacent plants along the row direction.
Definition CanopyGenerator.h:351
-
UnilateralGrapevineParameters::grape_radius
float grape_radius
Radius of grape berries.
Definition CanopyGenerator.h:390
-
UnilateralGrapevineParameters::wood_subdivisions
int wood_subdivisions
Number of radial subdivisions for trunk/cordon/shoot tubes.
Definition CanopyGenerator.h:348
-
UnilateralGrapevineParameters::row_spacing
float row_spacing
Spacing between plant rows.
Definition CanopyGenerator.h:354
-
UnilateralGrapevineParameters::plant_count
helios::int2 plant_count
Number of crowns/plants in the x- and y-directions.
Definition CanopyGenerator.h:381
-
UnilateralGrapevineParameters::cordon_height
float cordon_height
Distance between the ground and cordon. Note - must be greater than or equal to the trunk height.
Definition CanopyGenerator.h:363
-
UnilateralGrapevineParameters::canopy_origin
helios::vec3 canopy_origin
Cartesian (x,y,z) coordinate of the bottom center point of the canopy (i.e., specifying z=0 places th...
Definition CanopyGenerator.h:384
-
UnilateralGrapevineParameters::leaf_width
float leaf_width
Maximum width of leaves. Leaf width increases logarithmically from the shoot tip, so leaf_width is th...
Definition CanopyGenerator.h:336
-
UnilateralGrapevineParameters::cluster_height_max
float cluster_height_max
Maximum height of grape clusters along the shoot as a fraction of the total shoot length.
Definition CanopyGenerator.h:396
-
UnilateralGrapevineParameters::shoot_radius
float shoot_radius
Radius of shoot branches.
Definition CanopyGenerator.h:372
-
UnilateralGrapevineParameters::leaf_subdivisions
helios::int2 leaf_subdivisions
Number of sub-division segments per leaf.
Definition CanopyGenerator.h:339
-
UnilateralGrapevineParameters::grape_color
helios::RGBcolor grape_color
Color of grapes.
Definition CanopyGenerator.h:399
-
UnilateralGrapevineParameters::leaf_texture_file
std::string leaf_texture_file
Path to texture map file for leaves.
Definition CanopyGenerator.h:342
-
UnilateralGrapevineParameters::shoots_per_cordon
uint shoots_per_cordon
Number of shoots on each cordon.
Definition CanopyGenerator.h:375
-
UnilateralGrapevineParameters::grape_subdivisions
uint grape_subdivisions
Number of azimuthal and zenithal subdivisions making up berries (will result in roughly grape_subdivi...
Definition CanopyGenerator.h:402
-
UnilateralGrapevineParameters::canopy_rotation
float canopy_rotation
Azimuthal rotation of the canopy about the canopy origin. Note that if canopy_rotation is not equal t...
Definition CanopyGenerator.h:387
-
UnilateralGrapevineParameters::wood_texture_file
std::string wood_texture_file
Path to texture map file for trunks/branches.
Definition CanopyGenerator.h:345
-
UnilateralGrapevineParameters::cordon_radius
float cordon_radius
Radius of cordon branches.
Definition CanopyGenerator.h:366
-
VSPGrapevineParameters
Parameters defining the grapevine canopy with vertical shoot positioned (VSP) trellis.
Definition CanopyGenerator.h:161
-
VSPGrapevineParameters::leaf_spacing_fraction
float leaf_spacing_fraction
Spacing between adjacent leaves as a fraction of the local leaf width. E.g., leaf_spacing_fraction = ...
Definition CanopyGenerator.h:209
-
VSPGrapevineParameters::wood_subdivisions
int wood_subdivisions
Number of radial subdivisions for trunk/cordon/shoot tubes.
Definition CanopyGenerator.h:179
-
VSPGrapevineParameters::cordon_height
float cordon_height
Distance between the ground and cordon. Note - must be greater than or equal to the trunk height.
Definition CanopyGenerator.h:194
-
VSPGrapevineParameters::trunk_height
float trunk_height
Distance between the ground and top of trunks.
Definition CanopyGenerator.h:188
-
VSPGrapevineParameters::cluster_height_max
float cluster_height_max
Maximum height of grape clusters along the shoot as a fraction of the total shoot length.
Definition CanopyGenerator.h:227
-
VSPGrapevineParameters::row_spacing
float row_spacing
Spacing between plant rows.
Definition CanopyGenerator.h:185
-
VSPGrapevineParameters::canopy_rotation
float canopy_rotation
Azimuthal rotation of the canopy about the canopy origin. Note that if canopy_rotation is not equal t...
Definition CanopyGenerator.h:218
-
VSPGrapevineParameters::plant_spacing
float plant_spacing
Spacing between adjacent plants along the row direction.
Definition CanopyGenerator.h:182
-
VSPGrapevineParameters::wood_texture_file
std::string wood_texture_file
Path to texture map file for trunks/branches.
Definition CanopyGenerator.h:176
-
VSPGrapevineParameters::cluster_radius
float cluster_radius
Maximum horizontal radius of grape clusters.
Definition CanopyGenerator.h:224
-
VSPGrapevineParameters::plant_count
helios::int2 plant_count
Number of crowns/plants in the x- and y-directions.
Definition CanopyGenerator.h:212
-
VSPGrapevineParameters::leaf_width
float leaf_width
Maximum width of leaves. Leaf width increases logarithmically from the shoot tip, so leaf_width is th...
Definition CanopyGenerator.h:167
-
VSPGrapevineParameters::grape_color
helios::RGBcolor grape_color
Color of grapes.
Definition CanopyGenerator.h:230
-
VSPGrapevineParameters::leaf_subdivisions
helios::int2 leaf_subdivisions
Number of sub-division segments per leaf.
Definition CanopyGenerator.h:170
-
VSPGrapevineParameters::shoots_per_cordon
uint shoots_per_cordon
Number of shoots on each cordon.
Definition CanopyGenerator.h:206
-
VSPGrapevineParameters::grape_subdivisions
uint grape_subdivisions
Number of azimuthal and zenithal subdivisions making up berries (will result in roughly 2*(grape_subd...
Definition CanopyGenerator.h:233
-
VSPGrapevineParameters::grape_radius
float grape_radius
Radius of grape berries.
Definition CanopyGenerator.h:221
-
VSPGrapevineParameters::cordon_radius
float cordon_radius
Radius of cordon branches.
Definition CanopyGenerator.h:197
-
VSPGrapevineParameters::leaf_texture_file
std::string leaf_texture_file
Path to texture map file for leaves.
Definition CanopyGenerator.h:173
-
VSPGrapevineParameters::shoot_length
float shoot_length
Length of shoots.
Definition CanopyGenerator.h:200
-
VSPGrapevineParameters::trunk_radius
float trunk_radius
Radius of the trunk at the widest point.
Definition CanopyGenerator.h:191
-
VSPGrapevineParameters::shoot_radius
float shoot_radius
Radius of shoot branches.
Definition CanopyGenerator.h:203
-
VSPGrapevineParameters::VSPGrapevineParameters
VSPGrapevineParameters()
Default constructor.
Definition CanopyGenerator.cpp:97
-
VSPGrapevineParameters::canopy_origin
helios::vec3 canopy_origin
Cartesian (x,y,z) coordinate of the bottom center point of the canopy (i.e., specifying z=0 places th...
Definition CanopyGenerator.h:215
-
WalnutCanopyParameters
Parameters defining the walnut tree canopy.
Definition CanopyGenerator.h:665
-
WalnutCanopyParameters::plant_count
helios::int2 plant_count
Number of crowns/plants in the x- and y-directions.
Definition CanopyGenerator.h:711
-
WalnutCanopyParameters::wood_subdivisions
int wood_subdivisions
Number of radial subdivisions for branch tubes.
Definition CanopyGenerator.h:683
-
WalnutCanopyParameters::plant_spacing
float plant_spacing
Spacing between adjacent plants along the row direction.
Definition CanopyGenerator.h:696
-
WalnutCanopyParameters::WalnutCanopyParameters
WalnutCanopyParameters()
Default constructor.
Definition CanopyGenerator.cpp:415
-
WalnutCanopyParameters::fruit_texture_file
std::string fruit_texture_file
Texture map for walnut fruit.
Definition CanopyGenerator.h:705
-
WalnutCanopyParameters::leaf_subdivisions
helios::int2 leaf_subdivisions
Number of sub-division segments per leaf.
Definition CanopyGenerator.h:674
-
WalnutCanopyParameters::fruit_subdivisions
uint fruit_subdivisions
Number of azimuthal and zenithal subdivisions making up fruit (will result in roughly fruit_subdivisi...
Definition CanopyGenerator.h:708
-
WalnutCanopyParameters::trunk_radius
float trunk_radius
Radius of trunk.
Definition CanopyGenerator.h:686
-
WalnutCanopyParameters::fruit_radius
float fruit_radius
Radius of walnuts.
Definition CanopyGenerator.h:702
-
WalnutCanopyParameters::canopy_rotation
float canopy_rotation
Azimuthal rotation of the canopy about the canopy origin. Note that if canopy_rotation is not equal t...
Definition CanopyGenerator.h:717
-
WalnutCanopyParameters::canopy_origin
helios::vec3 canopy_origin
Cartesian (x,y,z) coordinate of the bottom center point of the canopy (i.e., specifying z=0 places th...
Definition CanopyGenerator.h:714
-
WalnutCanopyParameters::leaf_texture_file
std::string leaf_texture_file
Path to texture map file for leaves.
Definition CanopyGenerator.h:677
-
WalnutCanopyParameters::leaf_length
float leaf_length
Maximum length of leaves along midrib.
Definition CanopyGenerator.h:671
-
WalnutCanopyParameters::wood_texture_file
std::string wood_texture_file
Path to texture map file for wood/branches.
Definition CanopyGenerator.h:680
-
WalnutCanopyParameters::branch_length
helios::vec3 branch_length
Average length of branches in each recursive branch level. For example, the first (....
Definition CanopyGenerator.h:692
-
WalnutCanopyParameters::trunk_height
float trunk_height
Height of the trunk.
Definition CanopyGenerator.h:689
-
WalnutCanopyParameters::row_spacing
float row_spacing
Spacing between plant rows.
Definition CanopyGenerator.h:699
-
WhiteSpruceCanopyParameters
Parameters defining the white spruce.
Definition CanopyGenerator.h:491
-
WhiteSpruceCanopyParameters::needle_width
float needle_width
Width of needles.
Definition CanopyGenerator.h:497
-
WhiteSpruceCanopyParameters::needle_subdivisions
helios::int2 needle_subdivisions
Number of sub-division segments per needle.
Definition CanopyGenerator.h:503
-
WhiteSpruceCanopyParameters::wood_texture_file
std::string wood_texture_file
Path to texture map file for trunks/branches.
Definition CanopyGenerator.h:509
-
WhiteSpruceCanopyParameters::plant_spacing
helios::vec2 plant_spacing
Spacing between adjacent crowns in the x- and y-directions. Note that if canopy_configuration='random...
Definition CanopyGenerator.h:542
-
WhiteSpruceCanopyParameters::needle_length
float needle_length
Length of needles.
Definition CanopyGenerator.h:500
-
WhiteSpruceCanopyParameters::trunk_height
float trunk_height
Distance between the ground and top of trunks.
Definition CanopyGenerator.h:515
-
WhiteSpruceCanopyParameters::level_spacing
float level_spacing
Vertical spacing between branching levels.
Definition CanopyGenerator.h:530
-
WhiteSpruceCanopyParameters::shoot_radius
float shoot_radius
Radius of shoot branches.
Definition CanopyGenerator.h:527
-
WhiteSpruceCanopyParameters::wood_subdivisions
int wood_subdivisions
Number of radial subdivisions for trunk/cordon/shoot tubes.
Definition CanopyGenerator.h:512
-
WhiteSpruceCanopyParameters::canopy_rotation
float canopy_rotation
Azimuthal rotation of the canopy about the canopy origin. Note that if canopy_rotation is not equal t...
Definition CanopyGenerator.h:551
-
WhiteSpruceCanopyParameters::shoot_angle
float shoot_angle
Maximum shoot angle.
Definition CanopyGenerator.h:536
-
WhiteSpruceCanopyParameters::plant_count
helios::int2 plant_count
Number of crowns/plants in the x- and y-directions.
Definition CanopyGenerator.h:545
-
WhiteSpruceCanopyParameters::base_height
float base_height
Height at which branches start.
Definition CanopyGenerator.h:521
-
WhiteSpruceCanopyParameters::crown_radius
float crown_radius
Radius of the crown at the base.
Definition CanopyGenerator.h:524
-
WhiteSpruceCanopyParameters::needle_color
helios::RGBcolor needle_color
Color of needles.
Definition CanopyGenerator.h:506
-
WhiteSpruceCanopyParameters::trunk_radius
float trunk_radius
Radius of the trunk at the base.
Definition CanopyGenerator.h:518
-
WhiteSpruceCanopyParameters::WhiteSpruceCanopyParameters
WhiteSpruceCanopyParameters()
Default constructor.
Definition CanopyGenerator.cpp:303
-
WhiteSpruceCanopyParameters::canopy_origin
helios::vec3 canopy_origin
Cartesian (x,y,z) coordinate of the bottom center point of the canopy (i.e., specifying z=0 places th...
Definition CanopyGenerator.h:548
-
WhiteSpruceCanopyParameters::branches_per_level
int branches_per_level
Number of primary branches on the bottom level.
Definition CanopyGenerator.h:533
-
WhiteSpruceCanopyParameters::canopy_configuration
std::string canopy_configuration
Specifies whether to use a uniformly spaced canopy (canopy_configuration="uniform") or a randomly arr...
Definition CanopyGenerator.h:539
-
helios::RGBcolor
R-G-B color vector.
Definition helios_vector_types.h:841
+
BaseCanopyParameters
Base struct class for Canopy parameters.
Definition CanopyGenerator.h:25
+
BaseCanopyParameters::canopy_origin
helios::vec3 canopy_origin
Cartesian (x,y,z) coordinate of the bottom center point of the canopy (i.e., specifying z=0 places th...
Definition CanopyGenerator.h:50
+
BaseCanopyParameters::BaseCanopyParameters
BaseCanopyParameters()
Default constructor.
Definition CanopyGenerator.cpp:28
+
BaseCanopyParameters::buildCanopy
virtual void buildCanopy(CanopyGenerator &canopy_generator)=0
Makes the given Canopy generator build a canopy of our type with our parameters.
+
BaseCanopyParameters::readParametersFromXML
void readParametersFromXML(const pugi::xml_node canopy_node)
Sets canopy parameters from the given XML node.
Definition CanopyGenerator.cpp:37
+
BaseCanopyParameters::canopy_rotation
float canopy_rotation
Azimuthal rotation of the canopy about the canopy origin. Note that if canopy_rotation is not equal t...
Definition CanopyGenerator.h:53
+
BaseCanopyParameters::buildPlant
virtual void buildPlant(CanopyGenerator &canopy_generator, helios::vec3 origin)=0
Makes the given Canopy generator build a single plant of our canopy type with our parameters at the g...
+ +
BaseGrapeVineParameters::plant_spacing
float plant_spacing
Spacing between adjacent plants along the row direction.
Definition CanopyGenerator.h:284
+
BaseGrapeVineParameters::shoot_radius_spread
float shoot_radius_spread
Spread value for the shoot radius. With any new canopy or plant generation, the shoot radius would be...
Definition CanopyGenerator.h:326
+
BaseGrapeVineParameters::missing_plant_probability
float missing_plant_probability
Probability for a plant to be missing.
Definition CanopyGenerator.h:281
+
BaseGrapeVineParameters::dead_probability
float dead_probability
Probability for a plant to be dead, i.e. without any leaves or grapes.
Definition CanopyGenerator.h:275
+
BaseGrapeVineParameters::cluster_radius
float cluster_radius
Maximum horizontal radius of grape clusters.
Definition CanopyGenerator.h:347
+
BaseGrapeVineParameters::readParametersFromXML
void readParametersFromXML(const pugi::xml_node canopy_node)
Sets canopy parameters from the given XML node.
Definition CanopyGenerator.cpp:391
+
BaseGrapeVineParameters::cluster_height_max
float cluster_height_max
Maximum height of grape clusters along the shoot as a fraction of the total shoot length.
Definition CanopyGenerator.h:352
+
BaseGrapeVineParameters::BaseGrapeVineParameters
BaseGrapeVineParameters()
Default constructor.
Definition CanopyGenerator.cpp:339
+
BaseGrapeVineParameters::leaf_texture_file
std::string leaf_texture_file
Path to texture map file for leaves.
Definition CanopyGenerator.h:264
+
BaseGrapeVineParameters::leaf_spacing_fraction_spread
float leaf_spacing_fraction_spread
Spread value for the leaf spacing fraction. With any new canopy or plant generation,...
Definition CanopyGenerator.h:336
+
BaseGrapeVineParameters::wood_subdivisions
int wood_subdivisions
Number of radial subdivisions for trunk/cordon/shoot tubes.
Definition CanopyGenerator.h:270
+
BaseGrapeVineParameters::row_spacing
float row_spacing
Spacing between plant rows.
Definition CanopyGenerator.h:289
+
BaseGrapeVineParameters::grape_subdivisions
uint grape_subdivisions
Number of azimuthal and zenithal subdivisions making up berries (will result in roughly 2*(grape_subd...
Definition CanopyGenerator.h:360
+
BaseGrapeVineParameters::plant_spacing_spread
float plant_spacing_spread
Spread value for the plant spacing. The spacing between adjacent plants along a row would vary betwee...
Definition CanopyGenerator.h:286
+
BaseGrapeVineParameters::shoot_length_spread
float shoot_length_spread
Spread value for the shoot length. With any new canopy or plant generation, the shoot length would be...
Definition CanopyGenerator.h:321
+
BaseGrapeVineParameters::leaf_spacing_fraction
float leaf_spacing_fraction
Spacing between adjacent leaves as a fraction of the local leaf width. E.g., leaf_spacing_fraction = ...
Definition CanopyGenerator.h:334
+
BaseGrapeVineParameters::trunk_height_spread
float trunk_height_spread
Spread value for the trunk height. With any new canopy or plant generation, the trunk height would be...
Definition CanopyGenerator.h:296
+
BaseGrapeVineParameters::shoots_per_cordon_spread
uint shoots_per_cordon_spread
Spread value for the number of shoots per cordon. With any new canopy or plant generation,...
Definition CanopyGenerator.h:331
+
BaseGrapeVineParameters::cordon_radius
float cordon_radius
Radius of cordon branches.
Definition CanopyGenerator.h:314
+
BaseGrapeVineParameters::trunk_radius_spread
float trunk_radius_spread
Spread value for the trunk radius. With any new canopy or plant generation, the trunk radius would be...
Definition CanopyGenerator.h:301
+
BaseGrapeVineParameters::buildPlant
void buildPlant(CanopyGenerator &canopy_generator, helios::vec3 origin) override
Makes the given Canopy generator build a single plant of our canopy type with our parameters at the g...
Definition CanopyGenerator.cpp:611
+
BaseGrapeVineParameters::leaf_width
float leaf_width
Maximum width of leaves. Leaf width increases logarithmically from the shoot tip, so leaf_width is th...
Definition CanopyGenerator.h:256
+
BaseGrapeVineParameters::cordon_height_spread
float cordon_height_spread
Spread value for the cordon height. With any new canopy or plant generation, the cordon height would ...
Definition CanopyGenerator.h:311
+
BaseGrapeVineParameters::canopy_rotation_spread
float canopy_rotation_spread
Spread value for the canopy rotation. With any new canopy or plant generation, the canopy/plant rotat...
Definition CanopyGenerator.h:368
+
BaseGrapeVineParameters::wood_subdivisions_spread
int wood_subdivisions_spread
Spread value for the number of wood subdivisions. With any new canopy or plant generation,...
Definition CanopyGenerator.h:272
+
BaseGrapeVineParameters::shoots_per_cordon
uint shoots_per_cordon
Number of shoots on each cordon.
Definition CanopyGenerator.h:329
+
BaseGrapeVineParameters::buildCanopy
void buildCanopy(CanopyGenerator &canopy_generator) override
Makes the given Canopy generator build a canopy of our type with our parameters.
Definition CanopyGenerator.cpp:615
+
BaseGrapeVineParameters::trunk_height
float trunk_height
Distance between the ground and top of trunks.
Definition CanopyGenerator.h:294
+
BaseGrapeVineParameters::leaf_subdivisions
helios::int2 leaf_subdivisions
Number of sub-division segments per leaf.
Definition CanopyGenerator.h:261
+
BaseGrapeVineParameters::shoot_length
float shoot_length
Length of shoots.
Definition CanopyGenerator.h:319
+
BaseGrapeVineParameters::cluster_height_max_spread
float cluster_height_max_spread
Spread value for the cluster height. With any new canopy or plant generation, the cluster height woul...
Definition CanopyGenerator.h:354
+
BaseGrapeVineParameters::grape_subdivisions_spread
uint grape_subdivisions_spread
Spread value for the number of grape subdivisions. With any new canopy or plant generation,...
Definition CanopyGenerator.h:362
+
BaseGrapeVineParameters::trunk_radius
float trunk_radius
Radius of the trunk at the widest point.
Definition CanopyGenerator.h:299
+
BaseGrapeVineParameters::shoot_radius
float shoot_radius
Radius of shoot branches.
Definition CanopyGenerator.h:324
+
BaseGrapeVineParameters::cordon_length
float cordon_length
Length of the cordons. By default, half the plant spacing.
Definition CanopyGenerator.h:304
+
BaseGrapeVineParameters::cluster_radius_spread
float cluster_radius_spread
Spread value for the cluster radius. With any new canopy or plant generation, the cluster radius woul...
Definition CanopyGenerator.h:349
+
BaseGrapeVineParameters::grape_color
helios::RGBcolor grape_color
Color of grapes.
Definition CanopyGenerator.h:357
+
BaseGrapeVineParameters::cordon_radius_spread
float cordon_radius_spread
Spread value for the cordon radius. With any new canopy or plant generation, the cordon radius would ...
Definition CanopyGenerator.h:316
+
BaseGrapeVineParameters::leaf_width_spread
float leaf_width_spread
Spread value for the maximum leaf width. With any new canopy or plant generation, the maximum leaf wi...
Definition CanopyGenerator.h:258
+
BaseGrapeVineParameters::grape_radius_spread
float grape_radius_spread
Spread value for the grape radius. With any new canopy or plant generation, the grape radius would be...
Definition CanopyGenerator.h:344
+
BaseGrapeVineParameters::plant_count
helios::int2 plant_count
Number of crowns/plants in the x- and y-directions.
Definition CanopyGenerator.h:339
+
BaseGrapeVineParameters::row_spacing_spread
float row_spacing_spread
Spread value for the row spacing. This allows to vary the alignment of plants along a row....
Definition CanopyGenerator.h:291
+
BaseGrapeVineParameters::cordon_height
float cordon_height
Distance between the ground and cordon. Note - must be greater than or equal to the trunk height.
Definition CanopyGenerator.h:309
+
BaseGrapeVineParameters::wood_texture_file
std::string wood_texture_file
Path to texture map file for trunks/branches.
Definition CanopyGenerator.h:267
+
BaseGrapeVineParameters::grape_radius
float grape_radius
Radius of grape berries.
Definition CanopyGenerator.h:342
+
BaseGrapeVineParameters::cordon_length_spread
float cordon_length_spread
Spread value for the cordon length. With any new canopy or plant generation, the cordon length would ...
Definition CanopyGenerator.h:306
+
BeanParameters
Parameters defining the bean plant canopy.
Definition CanopyGenerator.h:983
+
BeanParameters::plant_spacing
float plant_spacing
Spacing between adjacent plants along the row direction.
Definition CanopyGenerator.h:1030
+
BeanParameters::leaflet_length
float leaflet_length
Length of the leaflet from base to tip leaf.
Definition CanopyGenerator.h:1027
+
BeanParameters::pod_length
float pod_length
Length of bean pods.
Definition CanopyGenerator.h:1042
+
BeanParameters::leaf_length
float leaf_length
Maximum width of leaves.
Definition CanopyGenerator.h:1006
+
BeanParameters::BeanParameters
BeanParameters()
Default constructor.
Definition CanopyGenerator.cpp:1767
+
BeanParameters::shoot_subdivisions
int shoot_subdivisions
Number of radial subdivisions for shoot tubes.
Definition CanopyGenerator.h:1018
+
BeanParameters::pod_color
helios::RGBcolor pod_color
Color of bean pods.
Definition CanopyGenerator.h:1045
+
BeanParameters::leaf_subdivisions
helios::int2 leaf_subdivisions
Number of sub-division segments per leaf.
Definition CanopyGenerator.h:1009
+
BeanParameters::stem_length
float stem_length
Length of stems before splitting to leaflets.
Definition CanopyGenerator.h:1024
+
BeanParameters::pod_subdivisions
uint pod_subdivisions
Number of lengthwise subdivisions making up pods.
Definition CanopyGenerator.h:1048
+
BeanParameters::buildPlant
void buildPlant(CanopyGenerator &canopy_generator, helios::vec3 origin) override
Makes the given Canopy generator build a single plant of our canopy type with our parameters at the g...
Definition CanopyGenerator.cpp:1884
+
BeanParameters::stem_radius
float stem_radius
Radius of main stem at base.
Definition CanopyGenerator.h:1021
+
BeanParameters::germination_probability
float germination_probability
Probability that a plant in the canopy germinated.
Definition CanopyGenerator.h:1039
+
BeanParameters::leaf_texture_file
std::string leaf_texture_file
Path to texture map file for leaves.
Definition CanopyGenerator.h:1012
+
BeanParameters::buildCanopy
void buildCanopy(CanopyGenerator &canopy_generator) override
Makes the given Canopy generator build a canopy of our type with our parameters.
Definition CanopyGenerator.cpp:1888
+
BeanParameters::readParametersFromXML
void readParametersFromXML(const pugi::xml_node canopy_node)
Sets canopy parameters from the given XML node.
Definition CanopyGenerator.cpp:1805
+
BeanParameters::shoot_color
helios::RGBcolor shoot_color
Color of shoots.
Definition CanopyGenerator.h:1015
+
BeanParameters::row_spacing
float row_spacing
Spacing between plant rows.
Definition CanopyGenerator.h:1033
+
BeanParameters::plant_count
helios::int2 plant_count
Number of crowns/plants in the x- and y-directions.
Definition CanopyGenerator.h:1036
+
ConicalCrownsCanopyParameters
Parameters defining the canopy with conical crowns.
Definition CanopyGenerator.h:171
+
ConicalCrownsCanopyParameters::plant_count
helios::int2 plant_count
Number of crowns/plants in the x- and y-directions.
Definition CanopyGenerator.h:224
+
ConicalCrownsCanopyParameters::leaf_angle_distribution
std::string leaf_angle_distribution
Leaf angle distribution - one of "spherical", "uniform", "erectophile", "planophile",...
Definition CanopyGenerator.h:206
+
ConicalCrownsCanopyParameters::ConicalCrownsCanopyParameters
ConicalCrownsCanopyParameters()
Default constructor.
Definition CanopyGenerator.cpp:233
+
ConicalCrownsCanopyParameters::leaf_subdivisions
helios::int2 leaf_subdivisions
Number of sub-division segments per leaf.
Definition CanopyGenerator.h:197
+
ConicalCrownsCanopyParameters::leaf_color
helios::RGBcolor leaf_color
Leaf color if no texture map file is provided.
Definition CanopyGenerator.h:203
+
ConicalCrownsCanopyParameters::leaf_texture_file
std::string leaf_texture_file
Path to texture map file for leaves. If left empty, no texture will be used.
Definition CanopyGenerator.h:200
+
ConicalCrownsCanopyParameters::crown_height
float crown_height
Height of the conical crowns.
Definition CanopyGenerator.h:215
+
ConicalCrownsCanopyParameters::plant_spacing
helios::vec2 plant_spacing
Spacing between adjacent crowns in the x- and y-directions. Note that if canopy_configuration='random...
Definition CanopyGenerator.h:221
+
ConicalCrownsCanopyParameters::buildCanopy
void buildCanopy(CanopyGenerator &canopy_generator) override
Makes the given Canopy generator build a canopy of our type with our parameters.
Definition CanopyGenerator.cpp:335
+
ConicalCrownsCanopyParameters::canopy_configuration
std::string canopy_configuration
Specifies whether to use a uniformly spaced canopy (canopy_configuration="uniform") or a randomly arr...
Definition CanopyGenerator.h:218
+
ConicalCrownsCanopyParameters::leaf_size
helios::vec2 leaf_size
Length of leaf in x- and y- directions (prior to rotation)
Definition CanopyGenerator.h:194
+
ConicalCrownsCanopyParameters::crown_radius
float crown_radius
Radius of the conical crowns at the base.
Definition CanopyGenerator.h:212
+
ConicalCrownsCanopyParameters::leaf_area_density
float leaf_area_density
One-sided leaf area density within spherical crowns.
Definition CanopyGenerator.h:209
+
ConicalCrownsCanopyParameters::buildPlant
void buildPlant(CanopyGenerator &canopy_generator, helios::vec3 origin) override
Makes the given Canopy generator build a single plant of our canopy type with our parameters at the g...
Definition CanopyGenerator.cpp:331
+
ConicalCrownsCanopyParameters::readParametersFromXML
void readParametersFromXML(const pugi::xml_node canopy_node)
Sets canopy parameters from the given XML node.
Definition CanopyGenerator.cpp:261
+
GobletGrapevineParameters
Parameters defining the grapevine canopy with goblet (vent a taille) trellis.
Definition CanopyGenerator.h:464
+
GobletGrapevineParameters::GobletGrapevineParameters
GobletGrapevineParameters()
Default constructor.
Definition CanopyGenerator.cpp:793
+
GobletGrapevineParameters::buildPlant
void buildPlant(CanopyGenerator &canopy_generator, helios::vec3 origin) override
Makes the given Canopy generator build a single plant of our canopy type with our parameters at the g...
Definition CanopyGenerator.cpp:833
+
GobletGrapevineParameters::buildCanopy
void buildCanopy(CanopyGenerator &canopy_generator) override
Makes the given Canopy generator build a canopy of our type with our parameters.
Definition CanopyGenerator.cpp:837
+
GobletGrapevineParameters::readParametersFromXML
void readParametersFromXML(const pugi::xml_node canopy_node)
Sets canopy parameters from the given XML node.
Definition CanopyGenerator.cpp:829
+
HomogeneousCanopyParameters
Parameters defining the homogeneous canopy.
Definition CanopyGenerator.h:58
+
HomogeneousCanopyParameters::readParametersFromXML
void readParametersFromXML(const pugi::xml_node canopy_node)
Sets canopy parameters from the given XML node.
Definition CanopyGenerator.cpp:75
+
HomogeneousCanopyParameters::buffer
std::string buffer
String specifying whether leaves should be placed so that leaf edges do not fall outside the specifie...
Definition CanopyGenerator.h:108
+
HomogeneousCanopyParameters::leaf_size
helios::vec2 leaf_size
Length of leaf in x- and y- directions (prior to rotation)
Definition CanopyGenerator.h:81
+
HomogeneousCanopyParameters::leaf_color
helios::RGBcolor leaf_color
Leaf color if no texture map file is provided.
Definition CanopyGenerator.h:90
+
HomogeneousCanopyParameters::buildPlant
void buildPlant(CanopyGenerator &canopy_generator, helios::vec3 origin) override
Makes the given Canopy generator build a single plant of our canopy type with our parameters at the g...
Definition CanopyGenerator.cpp:127
+
HomogeneousCanopyParameters::buildCanopy
void buildCanopy(CanopyGenerator &canopy_generator) override
Makes the given Canopy generator build a canopy of our type with our parameters.
Definition CanopyGenerator.cpp:131
+
HomogeneousCanopyParameters::canopy_extent
helios::vec2 canopy_extent
Horizontal extent of the canopy in the x- and y-directions.
Definition CanopyGenerator.h:102
+
HomogeneousCanopyParameters::leaf_subdivisions
helios::int2 leaf_subdivisions
Number of sub-division segments per leaf.
Definition CanopyGenerator.h:84
+
HomogeneousCanopyParameters::canopy_height
float canopy_height
Height of the canopy.
Definition CanopyGenerator.h:99
+
HomogeneousCanopyParameters::leaf_angle_distribution
std::string leaf_angle_distribution
Leaf angle distribution - one of "spherical", "uniform", "erectophile", "planophile",...
Definition CanopyGenerator.h:93
+
HomogeneousCanopyParameters::HomogeneousCanopyParameters
HomogeneousCanopyParameters()
Default constructor.
Definition CanopyGenerator.cpp:51
+
HomogeneousCanopyParameters::leaf_texture_file
std::string leaf_texture_file
Path to texture map file for leaves. If left empty, no texture will be used.
Definition CanopyGenerator.h:87
+
HomogeneousCanopyParameters::leaf_area_index
float leaf_area_index
One-sided leaf area index of the canopy.
Definition CanopyGenerator.h:96
+
SorghumCanopyParameters
Parameters defining Sorghum plant canopy.
Definition CanopyGenerator.h:764
+
SorghumCanopyParameters::s5_stem_subdivisions
int s5_stem_subdivisions
Number of stem radial subdivisions for stage 5.
Definition CanopyGenerator.h:944
+
SorghumCanopyParameters::s2_stem_subdivisions
float s2_stem_subdivisions
Number of stem radial subdivisions for stage 2.
Definition CanopyGenerator.h:833
+
SorghumCanopyParameters::s1_leaf1_angle
float s1_leaf1_angle
Leaf1 vertical angle of rotation for stage 1.
Definition CanopyGenerator.h:810
+
SorghumCanopyParameters::s5_stem_length
float s5_stem_length
Length of the sorghum stem for stage 5.
Definition CanopyGenerator.h:935
+
SorghumCanopyParameters::s4_seed_texture_file
std::string s4_seed_texture_file
Texture map of the panicle for stage 4.
Definition CanopyGenerator.h:915
+
SorghumCanopyParameters::s5_number_of_leaves
int s5_number_of_leaves
Number of leaves for the sorghum plant, stage 5.
Definition CanopyGenerator.h:962
+
SorghumCanopyParameters::s5_mean_leaf_angle
float s5_mean_leaf_angle
Mean vertical angle of rotation of leaf for stage 5 in degrees; Standard deviation for the angle is 1...
Definition CanopyGenerator.h:965
+
SorghumCanopyParameters::buildPlant
void buildPlant(CanopyGenerator &canopy_generator, helios::vec3 origin) override
Makes the given Canopy generator build a single plant of our canopy type with our parameters at the g...
Definition CanopyGenerator.cpp:1759
+
SorghumCanopyParameters::s4_stem_length
float s4_stem_length
Length of the sorghum stem for stage 4.
Definition CanopyGenerator.h:900
+
SorghumCanopyParameters::s3_leaf_subdivisions
helios::int2 s3_leaf_subdivisions
Number of sub-division segments of leaf in the x- (length) and y- (width) direction for stage 3.
Definition CanopyGenerator.h:886
+
SorghumCanopyParameters::s1_leaf_texture_file
std::string s1_leaf_texture_file
Texture map for sorghum leaf1 for stage 1.
Definition CanopyGenerator.h:822
+
SorghumCanopyParameters::s1_leaf_size2
helios::vec2 s1_leaf_size2
Length of leaf2 in x- (length) and y- (width) directions (prior to rotation) for stage 1.
Definition CanopyGenerator.h:804
+
SorghumCanopyParameters::s4_stem_radius
float s4_stem_radius
Radius of the sorghum stem for stage 4.
Definition CanopyGenerator.h:903
+
SorghumCanopyParameters::s3_mean_leaf_angle
float s3_mean_leaf_angle
Mean vertical angle of rotation of leaf for stage 3 in degrees; Standard deviation for the leaves is ...
Definition CanopyGenerator.h:892
+
SorghumCanopyParameters::s4_stem_subdivisions
float s4_stem_subdivisions
Number of stem radial subdivisions for stage 4.
Definition CanopyGenerator.h:906
+
SorghumCanopyParameters::s2_leaf1_angle
float s2_leaf1_angle
Leaf1 vertical angle of rotation for stage 2.
Definition CanopyGenerator.h:851
+
SorghumCanopyParameters::s2_leaf_texture_file
std::string s2_leaf_texture_file
Texture map for sorghum leaf for stage 2.
Definition CanopyGenerator.h:869
+
SorghumCanopyParameters::s5_panicle_subdivisions
int s5_panicle_subdivisions
Number of panicle subdivisions for each grain sphere within a panicle, stage 5.
Definition CanopyGenerator.h:950
+
SorghumCanopyParameters::s2_leaf4_angle
float s2_leaf4_angle
Leaf4 vertical angle of rotation for stage 2.
Definition CanopyGenerator.h:860
+
SorghumCanopyParameters::s4_mean_leaf_angle
float s4_mean_leaf_angle
Mean vertical angle of rotation of leaf for stage 4 in degrees; Standard deviation for the angle is 5...
Definition CanopyGenerator.h:927
+
SorghumCanopyParameters::s2_leaf5_angle
float s2_leaf5_angle
Leaf5 vertical angle of rotation for stage 2.
Definition CanopyGenerator.h:863
+
SorghumCanopyParameters::s2_leaf_subdivisions
helios::int2 s2_leaf_subdivisions
Number of sub-division segments of leaf in the x- (length) and y- (width) direction for stage 2.
Definition CanopyGenerator.h:866
+
SorghumCanopyParameters::plant_spacing
float plant_spacing
Spacing between adjacent plants along the row direction.
Definition CanopyGenerator.h:972
+
SorghumCanopyParameters::s4_leaf_size
helios::vec2 s4_leaf_size
Length of leaf in x- (length) and y- (width) directions (prior to rotation) for stage 4.
Definition CanopyGenerator.h:918
+
SorghumCanopyParameters::s2_leaf3_angle
float s2_leaf3_angle
Leaf3 vertical angle of rotation for stage 2.
Definition CanopyGenerator.h:857
+
SorghumCanopyParameters::s4_leaf_subdivisions
helios::int2 s4_leaf_subdivisions
Number of sub-division segments of leaf in the x- (length) and y- (width) direction for stage 4.
Definition CanopyGenerator.h:921
+
SorghumCanopyParameters::s2_stem_radius
float s2_stem_radius
Radius of the sorghum stem for stage 2.
Definition CanopyGenerator.h:830
+
SorghumCanopyParameters::SorghumCanopyParameters
SorghumCanopyParameters()
Default constructor.
Definition CanopyGenerator.cpp:1309
+
SorghumCanopyParameters::s5_stem_bend
float s5_stem_bend
Bend of the stem from mid-section for stage 5. The distance from the mid-section of the stem to the i...
Definition CanopyGenerator.h:941
+
SorghumCanopyParameters::s1_leaf_size1
helios::vec2 s1_leaf_size1
Length of leaf1 in x- (length) and y- (width) directions (prior to rotation) for stage 1.
Definition CanopyGenerator.h:801
+
SorghumCanopyParameters::readParametersFromXML
void readParametersFromXML(const pugi::xml_node canopy_node)
Sets canopy parameters from the given XML node.
Definition CanopyGenerator.cpp:1445
+
SorghumCanopyParameters::s5_stem_radius
float s5_stem_radius
Radius of the sorghum stem for stage 5.
Definition CanopyGenerator.h:938
+
SorghumCanopyParameters::plant_count
helios::int2 plant_count
Number of crowns/plants in the x- and y-directions.
Definition CanopyGenerator.h:978
+
SorghumCanopyParameters::s3_stem_radius
float s3_stem_radius
Radius of the sorghum stem for stage 3.
Definition CanopyGenerator.h:877
+
SorghumCanopyParameters::s5_leaf_texture_file
std::string s5_leaf_texture_file
Texture map for sorghum leaf, stage 5.
Definition CanopyGenerator.h:968
+
SorghumCanopyParameters::s5_leaf_subdivisions
helios::int2 s5_leaf_subdivisions
Number of sub-division segments of leaf in the x- (length) and y- (width) direction for stage 5.
Definition CanopyGenerator.h:959
+
SorghumCanopyParameters::s1_leaf_size3
helios::vec2 s1_leaf_size3
Length of leaf3 in x- (length) and y- (width) directions (prior to rotation) for stage 1.
Definition CanopyGenerator.h:807
+
SorghumCanopyParameters::s4_number_of_leaves
int s4_number_of_leaves
Number of leaves for the sorghum plant, stage 4.
Definition CanopyGenerator.h:924
+
SorghumCanopyParameters::s4_panicle_subdivisions
int s4_panicle_subdivisions
Number of panicle subdivisions for each grain sphere within a panicle, stage 4.
Definition CanopyGenerator.h:912
+
SorghumCanopyParameters::s3_stem_length
float s3_stem_length
Length of the sorghum stem for stage 3.
Definition CanopyGenerator.h:874
+
SorghumCanopyParameters::s3_leaf_texture_file
std::string s3_leaf_texture_file
Texture map for sorghum leaf for stage 3.
Definition CanopyGenerator.h:895
+
SorghumCanopyParameters::s2_leaf_size3
helios::vec2 s2_leaf_size3
Length of leaf3 in x- (length) and y- (width) directions (prior to rotation) for stage 2.
Definition CanopyGenerator.h:842
+
SorghumCanopyParameters::s1_stem_radius
float s1_stem_radius
Radius of the sorghum stem for stage 1.
Definition CanopyGenerator.h:795
+
SorghumCanopyParameters::s5_panicle_size
helios::vec2 s5_panicle_size
Size of panicle in x- and y- directions for stage 5.
Definition CanopyGenerator.h:947
+
SorghumCanopyParameters::s3_number_of_leaves
int s3_number_of_leaves
Number of leaves along the stem for stage 3.
Definition CanopyGenerator.h:889
+
SorghumCanopyParameters::s2_leaf_size5
helios::vec2 s2_leaf_size5
Length of leaf5 in x- (length) and y- (width) directions (prior to rotation) for stage 2.
Definition CanopyGenerator.h:848
+
SorghumCanopyParameters::s5_leaf_size
helios::vec2 s5_leaf_size
Length of leaf in x- (length) and y- (width) directions (prior to rotation) for stage 5.
Definition CanopyGenerator.h:956
+
SorghumCanopyParameters::s1_stem_subdivisions
float s1_stem_subdivisions
Number of stem radial subdivisions for stage 1.
Definition CanopyGenerator.h:798
+
SorghumCanopyParameters::s2_leaf_size4
helios::vec2 s2_leaf_size4
Length of leaf4 in x- (length) and y- (width) directions (prior to rotation) for stage 2.
Definition CanopyGenerator.h:845
+
SorghumCanopyParameters::s1_leaf_subdivisions
helios::int2 s1_leaf_subdivisions
Number of sub-division segments of leaf in the x- (length) and y- (width) direction for stage 1.
Definition CanopyGenerator.h:819
+
SorghumCanopyParameters::s4_leaf_texture_file
std::string s4_leaf_texture_file
Texture map for sorghum leaf, stage 4.
Definition CanopyGenerator.h:930
+
SorghumCanopyParameters::s2_leaf_size2
helios::vec2 s2_leaf_size2
Length of leaf2 in x- (length) and y- (width) directions (prior to rotation) for stage 2.
Definition CanopyGenerator.h:839
+
SorghumCanopyParameters::row_spacing
float row_spacing
Spacing between plant rows.
Definition CanopyGenerator.h:975
+
SorghumCanopyParameters::s3_leaf_size
helios::vec2 s3_leaf_size
Length of leaf in x- (length) and y- (width) directions (prior to rotation) for stage 3.
Definition CanopyGenerator.h:883
+
SorghumCanopyParameters::s2_stem_length
float s2_stem_length
Length of the sorghum stem for stage 2.
Definition CanopyGenerator.h:827
+
SorghumCanopyParameters::s1_leaf2_angle
float s1_leaf2_angle
Leaf2 vertical angle of rotation for stage 1.
Definition CanopyGenerator.h:813
+
SorghumCanopyParameters::s3_stem_subdivisions
float s3_stem_subdivisions
Number of stem radial subdivisions for stage 3.
Definition CanopyGenerator.h:880
+
SorghumCanopyParameters::buildCanopy
void buildCanopy(CanopyGenerator &canopy_generator) override
Makes the given Canopy generator build a canopy of our type with our parameters.
Definition CanopyGenerator.cpp:1763
+
SorghumCanopyParameters::s1_stem_length
float s1_stem_length
Length of the sorghum stem for stage 1.
Definition CanopyGenerator.h:792
+
SorghumCanopyParameters::sorghum_stage
int sorghum_stage
Sorghum categorized into 5 stages; 1 - Three leaf stage, 2 - Five leaf stage, 3 - Panicle initiation ...
Definition CanopyGenerator.h:787
+
SorghumCanopyParameters::s1_leaf3_angle
float s1_leaf3_angle
Leaf3 vertical angle of rotation for stage 1.
Definition CanopyGenerator.h:816
+
SorghumCanopyParameters::s2_leaf_size1
helios::vec2 s2_leaf_size1
Length of leaf1 in x- (length) and y- (width) directions (prior to rotation) for stage 2.
Definition CanopyGenerator.h:836
+
SorghumCanopyParameters::s5_seed_texture_file
std::string s5_seed_texture_file
Texture map of the panicle for stage 5.
Definition CanopyGenerator.h:953
+
SorghumCanopyParameters::s4_panicle_size
helios::vec2 s4_panicle_size
Size of panicle in x- and y- directions for stage 4.
Definition CanopyGenerator.h:909
+
SorghumCanopyParameters::s2_leaf2_angle
float s2_leaf2_angle
Leaf2 vertical angle of rotation for stage 2.
Definition CanopyGenerator.h:854
+
SphericalCrownsCanopyParameters
Parameters defining the canopy with spherical crowns.
Definition CanopyGenerator.h:113
+
SphericalCrownsCanopyParameters::crown_radius
helios::vec3 crown_radius
Radius of the spherical crowns.
Definition CanopyGenerator.h:154
+
SphericalCrownsCanopyParameters::leaf_size
helios::vec2 leaf_size
Length of leaf in x- and y- directions (prior to rotation)
Definition CanopyGenerator.h:136
+
SphericalCrownsCanopyParameters::leaf_texture_file
std::string leaf_texture_file
Path to texture map file for leaves. If left empty, no texture will be used.
Definition CanopyGenerator.h:142
+
SphericalCrownsCanopyParameters::leaf_color
helios::RGBcolor leaf_color
Leaf color if no texture map file is provided.
Definition CanopyGenerator.h:145
+
SphericalCrownsCanopyParameters::plant_count
helios::int2 plant_count
Number of crowns/plants in the x- and y-directions.
Definition CanopyGenerator.h:163
+
SphericalCrownsCanopyParameters::plant_spacing
helios::vec2 plant_spacing
Spacing between adjacent crowns in the x- and y-directions. Note that if canopy_configuration='random...
Definition CanopyGenerator.h:160
+
SphericalCrownsCanopyParameters::SphericalCrownsCanopyParameters
SphericalCrownsCanopyParameters()
Default constructor.
Definition CanopyGenerator.cpp:135
+
SphericalCrownsCanopyParameters::leaf_subdivisions
helios::int2 leaf_subdivisions
Number of sub-division segments per leaf.
Definition CanopyGenerator.h:139
+
SphericalCrownsCanopyParameters::leaf_angle_distribution
std::string leaf_angle_distribution
Leaf angle distribution - one of "spherical", "uniform", "erectophile", "planophile",...
Definition CanopyGenerator.h:148
+
SphericalCrownsCanopyParameters::leaf_area_density
float leaf_area_density
One-sided leaf area density within spherical crowns.
Definition CanopyGenerator.h:151
+
SphericalCrownsCanopyParameters::canopy_configuration
std::string canopy_configuration
Specifies whether to use a uniformly spaced canopy (canopy_configuration="uniform") or a randomly arr...
Definition CanopyGenerator.h:157
+
SphericalCrownsCanopyParameters::readParametersFromXML
void readParametersFromXML(const pugi::xml_node canopy_node)
Sets canopy parameters from the given XML node.
Definition CanopyGenerator.cpp:161
+
SphericalCrownsCanopyParameters::buildCanopy
void buildCanopy(CanopyGenerator &canopy_generator) override
Makes the given Canopy generator build a canopy of our type with our parameters.
Definition CanopyGenerator.cpp:229
+
SphericalCrownsCanopyParameters::buildPlant
void buildPlant(CanopyGenerator &canopy_generator, helios::vec3 origin) override
Makes the given Canopy generator build a single plant of our canopy type with our parameters at the g...
Definition CanopyGenerator.cpp:225
+
SplitGrapevineParameters
Parameters defining the grapevine canopy with a split (quad) trellis.
Definition CanopyGenerator.h:398
+
SplitGrapevineParameters::buildCanopy
void buildCanopy(CanopyGenerator &canopy_generator) override
Makes the given Canopy generator build a canopy of our type with our parameters.
Definition CanopyGenerator.cpp:739
+
SplitGrapevineParameters::shoot_angle_base_spread
float shoot_angle_base_spread
Spread value for the base shoot angle. With any new canopy or plant generation, the base shoot angle ...
Definition CanopyGenerator.h:428
+
SplitGrapevineParameters::readParametersFromXML
void readParametersFromXML(const pugi::xml_node canopy_node)
Sets canopy parameters from the given XML node.
Definition CanopyGenerator.cpp:716
+
SplitGrapevineParameters::shoot_angle_base
float shoot_angle_base
Average angle of the shoot at the base (shoot_angle_base=0 points shoots upward; shoot_angle_base=M_P...
Definition CanopyGenerator.h:426
+
SplitGrapevineParameters::buildPlant
void buildPlant(CanopyGenerator &canopy_generator, helios::vec3 origin) override
Makes the given Canopy generator build a single plant of our canopy type with our parameters at the g...
Definition CanopyGenerator.cpp:735
+
SplitGrapevineParameters::SplitGrapevineParameters
SplitGrapevineParameters()
Default constructor.
Definition CanopyGenerator.cpp:669
+
SplitGrapevineParameters::cordon_spacing
float cordon_spacing
Spacing between two opposite cordons.
Definition CanopyGenerator.h:421
+
SplitGrapevineParameters::cordon_spacing_spread
float cordon_spacing_spread
Spread value for the cordon spacing. With any new canopy or plant generation, the cordon spacing woul...
Definition CanopyGenerator.h:423
+
SplitGrapevineParameters::shoot_angle_tip_spread
float shoot_angle_tip_spread
Spread value for the base shoot angle. With any new canopy or plant generation, the base shoot angle ...
Definition CanopyGenerator.h:433
+
SplitGrapevineParameters::shoot_angle_tip
float shoot_angle_tip
Average angle of the shoot at the tip (shoot_angle=0 is a completely vertical shoot; shoot_angle=M_PI...
Definition CanopyGenerator.h:431
+
StrawberryParameters
Parameters defining the strawberry plant canopy.
Definition CanopyGenerator.h:626
+
StrawberryParameters::stem_subdivisions
int stem_subdivisions
Number of radial subdivisions for stem tubes.
Definition CanopyGenerator.h:661
+
StrawberryParameters::stems_per_plant
int stems_per_plant
Number of stems per plant.
Definition CanopyGenerator.h:664
+
StrawberryParameters::fruit_radius
float fruit_radius
Radius of strawberry fruit.
Definition CanopyGenerator.h:682
+
StrawberryParameters::plant_spacing
float plant_spacing
Spacing between adjacent plants along the row direction.
Definition CanopyGenerator.h:670
+
StrawberryParameters::StrawberryParameters
StrawberryParameters()
Default constructor.
Definition CanopyGenerator.cpp:1080
+
StrawberryParameters::fruit_subdivisions
uint fruit_subdivisions
Number of azimuthal and zenithal subdivisions making up fruit (will result in roughly fruit_subdivisi...
Definition CanopyGenerator.h:688
+
StrawberryParameters::plant_count
helios::int2 plant_count
Number of crowns/plants in the x- and y-directions.
Definition CanopyGenerator.h:679
+
StrawberryParameters::plant_height
float plant_height
Height of the plant.
Definition CanopyGenerator.h:676
+
StrawberryParameters::readParametersFromXML
void readParametersFromXML(const pugi::xml_node canopy_node)
Sets canopy parameters from the given XML node.
Definition CanopyGenerator.cpp:1118
+
StrawberryParameters::buildPlant
void buildPlant(CanopyGenerator &canopy_generator, helios::vec3 origin) override
Makes the given Canopy generator build a single plant of our canopy type with our parameters at the g...
Definition CanopyGenerator.cpp:1192
+
StrawberryParameters::leaf_subdivisions
helios::int2 leaf_subdivisions
Number of sub-division segments per leaf.
Definition CanopyGenerator.h:652
+
StrawberryParameters::buildCanopy
void buildCanopy(CanopyGenerator &canopy_generator) override
Makes the given Canopy generator build a canopy of our type with our parameters.
Definition CanopyGenerator.cpp:1196
+
StrawberryParameters::fruit_texture_file
std::string fruit_texture_file
Texture map for strawberry fruit.
Definition CanopyGenerator.h:685
+
StrawberryParameters::clusters_per_stem
float clusters_per_stem
Number of strawberry clusters per plant stem. Clusters randomly have 1, 2, or 3 berries.
Definition CanopyGenerator.h:691
+
StrawberryParameters::stem_radius
float stem_radius
Radius of stems.
Definition CanopyGenerator.h:667
+
StrawberryParameters::leaf_texture_file
std::string leaf_texture_file
Path to texture map file for leaves.
Definition CanopyGenerator.h:655
+
StrawberryParameters::row_spacing
float row_spacing
Spacing between plant rows.
Definition CanopyGenerator.h:673
+
StrawberryParameters::stem_color
helios::RGBcolor stem_color
Color of stems.
Definition CanopyGenerator.h:658
+
StrawberryParameters::leaf_length
float leaf_length
Maximum width of leaves.
Definition CanopyGenerator.h:649
+
TomatoParameters
Parameters defining the tomato plant canopy.
Definition CanopyGenerator.h:565
+
TomatoParameters::shoot_subdivisions
int shoot_subdivisions
Number of radial subdivisions for shoot tubes.
Definition CanopyGenerator.h:600
+
TomatoParameters::buildPlant
void buildPlant(CanopyGenerator &canopy_generator, helios::vec3 origin) override
Makes the given Canopy generator build a single plant of our canopy type with our parameters at the g...
Definition CanopyGenerator.cpp:1072
+
TomatoParameters::leaf_length
float leaf_length
Maximum width of leaves.
Definition CanopyGenerator.h:588
+
TomatoParameters::fruit_color
helios::RGBcolor fruit_color
Color of tomato fruit.
Definition CanopyGenerator.h:618
+
TomatoParameters::leaf_subdivisions
helios::int2 leaf_subdivisions
Number of sub-division segments per leaf.
Definition CanopyGenerator.h:591
+
TomatoParameters::plant_count
helios::int2 plant_count
Number of crowns/plants in the x- and y-directions.
Definition CanopyGenerator.h:612
+
TomatoParameters::fruit_subdivisions
uint fruit_subdivisions
Number of azimuthal and zenithal subdivisions making up fruit (will result in roughly fruit_subdivisi...
Definition CanopyGenerator.h:621
+
TomatoParameters::shoot_color
helios::RGBcolor shoot_color
Color of shoots.
Definition CanopyGenerator.h:597
+
TomatoParameters::row_spacing
float row_spacing
Spacing between plant rows.
Definition CanopyGenerator.h:606
+
TomatoParameters::readParametersFromXML
void readParametersFromXML(const pugi::xml_node canopy_node)
Sets canopy parameters from the given XML node.
Definition CanopyGenerator.cpp:1007
+
TomatoParameters::plant_spacing
float plant_spacing
Spacing between adjacent plants along the row direction.
Definition CanopyGenerator.h:603
+
TomatoParameters::TomatoParameters
TomatoParameters()
Default constructor.
Definition CanopyGenerator.cpp:975
+
TomatoParameters::leaf_texture_file
std::string leaf_texture_file
Path to texture map file for leaves.
Definition CanopyGenerator.h:594
+
TomatoParameters::buildCanopy
void buildCanopy(CanopyGenerator &canopy_generator) override
Makes the given Canopy generator build a canopy of our type with our parameters.
Definition CanopyGenerator.cpp:1076
+
TomatoParameters::plant_height
float plant_height
Height of the plant.
Definition CanopyGenerator.h:609
+
TomatoParameters::fruit_radius
float fruit_radius
Radius of tomato fruit.
Definition CanopyGenerator.h:615
+
UnilateralGrapevineParameters
Parameters defining the grapevine canopy with unilateral trellis.
Definition CanopyGenerator.h:438
+
UnilateralGrapevineParameters::UnilateralGrapevineParameters
UnilateralGrapevineParameters()
Default constructor.
Definition CanopyGenerator.cpp:743
+
UnilateralGrapevineParameters::buildPlant
void buildPlant(CanopyGenerator &canopy_generator, helios::vec3 origin) override
Makes the given Canopy generator build a single plant of our canopy type with our parameters at the g...
Definition CanopyGenerator.cpp:785
+
UnilateralGrapevineParameters::readParametersFromXML
void readParametersFromXML(const pugi::xml_node canopy_node)
Sets canopy parameters from the given XML node.
Definition CanopyGenerator.cpp:781
+
UnilateralGrapevineParameters::buildCanopy
void buildCanopy(CanopyGenerator &canopy_generator) override
Makes the given Canopy generator build a canopy of our type with our parameters.
Definition CanopyGenerator.cpp:789
+
VSPGrapevineParameters
Parameters defining the grapevine canopy with vertical shoot positioned (VSP) trellis.
Definition CanopyGenerator.h:373
+
VSPGrapevineParameters::readParametersFromXML
void readParametersFromXML(const pugi::xml_node canopy_node)
Sets canopy parameters from the given XML node.
Definition CanopyGenerator.cpp:657
+
VSPGrapevineParameters::buildPlant
void buildPlant(CanopyGenerator &canopy_generator, helios::vec3 origin) override
Makes the given Canopy generator build a single plant of our canopy type with our parameters at the g...
Definition CanopyGenerator.cpp:661
+
VSPGrapevineParameters::buildCanopy
void buildCanopy(CanopyGenerator &canopy_generator) override
Makes the given Canopy generator build a canopy of our type with our parameters.
Definition CanopyGenerator.cpp:665
+
VSPGrapevineParameters::VSPGrapevineParameters
VSPGrapevineParameters()
Default constructor.
Definition CanopyGenerator.cpp:619
+
WalnutCanopyParameters
Parameters defining the walnut tree canopy.
Definition CanopyGenerator.h:696
+
WalnutCanopyParameters::plant_count
helios::int2 plant_count
Number of crowns/plants in the x- and y-directions.
Definition CanopyGenerator.h:759
+
WalnutCanopyParameters::wood_subdivisions
int wood_subdivisions
Number of radial subdivisions for branch tubes.
Definition CanopyGenerator.h:731
+
WalnutCanopyParameters::plant_spacing
float plant_spacing
Spacing between adjacent plants along the row direction.
Definition CanopyGenerator.h:744
+
WalnutCanopyParameters::WalnutCanopyParameters
WalnutCanopyParameters()
Default constructor.
Definition CanopyGenerator.cpp:1200
+
WalnutCanopyParameters::buildPlant
void buildPlant(CanopyGenerator &canopy_generator, helios::vec3 origin) override
Makes the given Canopy generator build a single plant of our canopy type with our parameters at the g...
Definition CanopyGenerator.cpp:1301
+
WalnutCanopyParameters::fruit_texture_file
std::string fruit_texture_file
Texture map for walnut fruit.
Definition CanopyGenerator.h:753
+
WalnutCanopyParameters::leaf_subdivisions
helios::int2 leaf_subdivisions
Number of sub-division segments per leaf.
Definition CanopyGenerator.h:722
+
WalnutCanopyParameters::fruit_subdivisions
uint fruit_subdivisions
Number of azimuthal and zenithal subdivisions making up fruit (will result in roughly fruit_subdivisi...
Definition CanopyGenerator.h:756
+
WalnutCanopyParameters::trunk_radius
float trunk_radius
Radius of trunk.
Definition CanopyGenerator.h:734
+
WalnutCanopyParameters::fruit_radius
float fruit_radius
Radius of walnuts.
Definition CanopyGenerator.h:750
+
WalnutCanopyParameters::leaf_texture_file
std::string leaf_texture_file
Path to texture map file for leaves.
Definition CanopyGenerator.h:725
+
WalnutCanopyParameters::leaf_length
float leaf_length
Maximum length of leaves along midrib.
Definition CanopyGenerator.h:719
+
WalnutCanopyParameters::readParametersFromXML
void readParametersFromXML(const pugi::xml_node canopy_node)
Sets canopy parameters from the given XML node.
Definition CanopyGenerator.cpp:1236
+
WalnutCanopyParameters::wood_texture_file
std::string wood_texture_file
Path to texture map file for wood/branches.
Definition CanopyGenerator.h:728
+
WalnutCanopyParameters::branch_length
helios::vec3 branch_length
Average length of branches in each recursive branch level. For example, the first (....
Definition CanopyGenerator.h:740
+
WalnutCanopyParameters::buildCanopy
void buildCanopy(CanopyGenerator &canopy_generator) override
Makes the given Canopy generator build a canopy of our type with our parameters.
Definition CanopyGenerator.cpp:1305
+
WalnutCanopyParameters::trunk_height
float trunk_height
Height of the trunk.
Definition CanopyGenerator.h:737
+
WalnutCanopyParameters::row_spacing
float row_spacing
Spacing between plant rows.
Definition CanopyGenerator.h:747
+
WhiteSpruceCanopyParameters
Parameters defining the white spruce.
Definition CanopyGenerator.h:489
+
WhiteSpruceCanopyParameters::needle_width
float needle_width
Width of needles.
Definition CanopyGenerator.h:512
+
WhiteSpruceCanopyParameters::needle_subdivisions
helios::int2 needle_subdivisions
Number of sub-division segments per needle.
Definition CanopyGenerator.h:518
+
WhiteSpruceCanopyParameters::readParametersFromXML
void readParametersFromXML(const pugi::xml_node canopy_node)
Sets canopy parameters from the given XML node.
Definition CanopyGenerator.cpp:883
+
WhiteSpruceCanopyParameters::buildCanopy
void buildCanopy(CanopyGenerator &canopy_generator) override
Makes the given Canopy generator build a canopy of our type with our parameters.
Definition CanopyGenerator.cpp:971
+
WhiteSpruceCanopyParameters::wood_texture_file
std::string wood_texture_file
Path to texture map file for trunks/branches.
Definition CanopyGenerator.h:524
+
WhiteSpruceCanopyParameters::plant_spacing
helios::vec2 plant_spacing
Spacing between adjacent crowns in the x- and y-directions. Note that if canopy_configuration='random...
Definition CanopyGenerator.h:557
+
WhiteSpruceCanopyParameters::needle_length
float needle_length
Length of needles.
Definition CanopyGenerator.h:515
+
WhiteSpruceCanopyParameters::trunk_height
float trunk_height
Distance between the ground and top of trunks.
Definition CanopyGenerator.h:530
+
WhiteSpruceCanopyParameters::level_spacing
float level_spacing
Vertical spacing between branching levels.
Definition CanopyGenerator.h:545
+
WhiteSpruceCanopyParameters::shoot_radius
float shoot_radius
Radius of shoot branches.
Definition CanopyGenerator.h:542
+
WhiteSpruceCanopyParameters::wood_subdivisions
int wood_subdivisions
Number of radial subdivisions for trunk/cordon/shoot tubes.
Definition CanopyGenerator.h:527
+
WhiteSpruceCanopyParameters::shoot_angle
float shoot_angle
Maximum shoot angle.
Definition CanopyGenerator.h:551
+
WhiteSpruceCanopyParameters::plant_count
helios::int2 plant_count
Number of crowns/plants in the x- and y-directions.
Definition CanopyGenerator.h:560
+
WhiteSpruceCanopyParameters::base_height
float base_height
Height at which branches start.
Definition CanopyGenerator.h:536
+
WhiteSpruceCanopyParameters::crown_radius
float crown_radius
Radius of the crown at the base.
Definition CanopyGenerator.h:539
+
WhiteSpruceCanopyParameters::needle_color
helios::RGBcolor needle_color
Color of needles.
Definition CanopyGenerator.h:521
+
WhiteSpruceCanopyParameters::trunk_radius
float trunk_radius
Radius of the trunk at the base.
Definition CanopyGenerator.h:533
+
WhiteSpruceCanopyParameters::buildPlant
void buildPlant(CanopyGenerator &canopy_generator, helios::vec3 origin) override
Makes the given Canopy generator build a single plant of our canopy type with our parameters at the g...
Definition CanopyGenerator.cpp:967
+
WhiteSpruceCanopyParameters::WhiteSpruceCanopyParameters
WhiteSpruceCanopyParameters()
Default constructor.
Definition CanopyGenerator.cpp:841
+
WhiteSpruceCanopyParameters::branches_per_level
int branches_per_level
Number of primary branches on the bottom level.
Definition CanopyGenerator.h:548
+
WhiteSpruceCanopyParameters::canopy_configuration
std::string canopy_configuration
Specifies whether to use a uniformly spaced canopy (canopy_configuration="uniform") or a randomly arr...
Definition CanopyGenerator.h:554
+
helios::RGBcolor
R-G-B color vector.
Definition helios_vector_types.h:844
helios::int2
Vector of two elements of type 'int'.
Definition helios_vector_types.h:44
helios::vec2
Vector of two elements of type 'float'.
Definition helios_vector_types.h:346
-
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:502
+
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:503
diff --git a/doc/html/_canopy_generator_doc.html b/doc/html/_canopy_generator_doc.html index d3a703ca4..9353faa55 100644 --- a/doc/html/_canopy_generator_doc.html +++ b/doc/html/_canopy_generator_doc.html @@ -38,7 +38,7 @@
@@ -953,11 +953,11 @@

}
- +
helios::Context
Stores the state associated with simulation.
Definition Context.h:1882
helios::int2
Vector of two elements of type 'int'.
Definition helios_vector_types.h:44
helios::vec2
Vector of two elements of type 'float'.
Definition helios_vector_types.h:346
-
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:502
+
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:503

Building an Individual Plant

Maximum flexibility in creating a canopy of plants is achieved by manually adding each individual plant. An example is given below to add a single grapevine plant on VSP trellis at the point (0,0,0).

@@ -980,7 +980,7 @@

canopygenerator.grapevineVSP( parameters, origin );
}
-
VSPGrapevineParameters
Parameters defining the grapevine canopy with vertical shoot positioned (VSP) trellis.
Definition CanopyGenerator.h:161
+
VSPGrapevineParameters
Parameters defining the grapevine canopy with vertical shoot positioned (VSP) trellis.
Definition CanopyGenerator.h:373

The function grapevineVSP() could be called many times with different origin positions to create any canopy that is desired. Below, we will introduce functions that automatically generate a canopy according to the values set in the parameters structure.

Building a Canopy

@@ -998,9 +998,10 @@

VSPGrapevineParameters parameters;
//Add the grapevine geometry to the Context
-
canopygenerator.buildCanopy( parameters );
+
canopygenerator.buildCanopy( parameters );
}
+
VSPGrapevineParameters::buildCanopy
void buildCanopy(CanopyGenerator &canopy_generator) override
Makes the given Canopy generator build a canopy of our type with our parameters.
Definition CanopyGenerator.cpp:665

Retrieving UUIDs for Primitives

The UUIDs of primitives making up the canopy geometry are grouped into four different types of elements: trunks, branches/shoots, leaves, and fruit. Not all canopy types will have all four groups of elements, for example the homogeneous canopy has no trunks, branches, or fruit. The UUIDs can be retrieved for a given plant using the appropriate getter function, as detailed in the table below. Additionally, UUIDs can be retrieved for the ground surface.

@@ -1035,7 +1036,7 @@

parameters.canopy_extent = make_vec2( 10.0, 10.0 );
canopygenerator.buildCanopy( parameters );
-
HomogeneousCanopyParameters
Parameters defining the homogeneous canopy.
Definition CanopyGenerator.h:23
+
HomogeneousCanopyParameters
Parameters defining the homogeneous canopy.
Definition CanopyGenerator.h:58

Seeding the Random Number Generator

Random variability is added to plant geometries using a pseudorandom number generator. By default, the random number sequence is seeded based on the system clock, which produces different results for each run.

@@ -1057,7 +1058,7 @@

canopygenerator.seedRandomGenerator( 10 );
//Add the grapevine geometry to the Context
-
canopygenerator.buildCanopy( parameters );
+
canopygenerator.buildCanopy( parameters );
}
diff --git a/doc/html/_carbohydrate_model_8cpp.html b/doc/html/_carbohydrate_model_8cpp.html index face7048b..659f0d8b0 100644 --- a/doc/html/_carbohydrate_model_8cpp.html +++ b/doc/html/_carbohydrate_model_8cpp.html @@ -38,7 +38,7 @@

diff --git a/doc/html/_carbohydrate_model_8cpp_source.html b/doc/html/_carbohydrate_model_8cpp_source.html index 64cc405a2..4646d35c6 100644 --- a/doc/html/_carbohydrate_model_8cpp_source.html +++ b/doc/html/_carbohydrate_model_8cpp_source.html @@ -38,7 +38,7 @@ @@ -276,157 +276,161 @@
184 auto shoot_tree = &plant.second.shoot_tree;
185
186 for (auto &shoot: *shoot_tree) {
-
187 shoot->carbohydrate_pool_molC -= context_ptr->getTubeObjectVolume(shoot->internode_tube_objID) * rho_cw * stem_maintainance_respiration_rate * dt;
-
188 }
-
189
-
190 }
+
187 if( context_ptr->doesObjectExist(shoot->internode_tube_objID) ) {
+
188 shoot->carbohydrate_pool_molC -= context_ptr->getTubeObjectVolume(shoot->internode_tube_objID) * rho_cw * stem_maintainance_respiration_rate * dt;
+
189 }
+
190 }
191
-
192}
+
192 }
193
-
194void PlantArchitecture::subtractShootGrowthCarbon(){
+
194}
195
-
196 //\todo move to externally settable parameter
-
197 float rho_w = 675000; //Almond wood density (g m^-3)
-
198 float rho_cw = rho_w * .5 / 12.01; //Density of carbon in almond wood (mol C m^-3)
-
199 float growth_respiration_fraction = 0.28; //Accounting for the growth carbon lost to respiration (assumed 28%)
-
200
-
201
-
202 for( auto &plant: plant_instances ){
+
196void PlantArchitecture::subtractShootGrowthCarbon(){
+
197
+
198 //\todo move to externally settable parameter
+
199 float rho_w = 675000; //Almond wood density (g m^-3)
+
200 float rho_cw = rho_w * .5 / 12.01; //Density of carbon in almond wood (mol C m^-3)
+
201 float growth_respiration_fraction = 0.28; //Accounting for the growth carbon lost to respiration (assumed 28%)
+
202
203
-
204 uint plantID = plant.first;
-
205 auto shoot_tree = &plant.second.shoot_tree;
-
206
-
207 for( auto &shoot: *shoot_tree ){
-
208 float shoot_volume = plant_instances.at(plantID).shoot_tree.at(shoot->ID)->calculateShootInternodeVolume();
-
209
-
210 float shoot_growth_carbon_demand = rho_cw*( shoot_volume - shoot->old_shoot_volume) / (1-growth_respiration_fraction); //Structural carbon + growth respiration required to construct new shoot volume
-
211 shoot->carbohydrate_pool_molC -= shoot_growth_carbon_demand; //Subtract construction carbon + growth respiration from the carbon pool
-
212 shoot->old_shoot_volume = shoot_volume; //Set old volume to the current volume for the next timestep
-
213
-
214 }
+
204 for( auto &plant: plant_instances ){
+
205
+
206 uint plantID = plant.first;
+
207 auto shoot_tree = &plant.second.shoot_tree;
+
208
+
209 for( auto &shoot: *shoot_tree ){
+
210 float shoot_volume = plant_instances.at(plantID).shoot_tree.at(shoot->ID)->calculateShootInternodeVolume();
+
211
+
212 float shoot_growth_carbon_demand = rho_cw*( shoot_volume - shoot->old_shoot_volume) / (1-growth_respiration_fraction); //Structural carbon + growth respiration required to construct new shoot volume
+
213 shoot->carbohydrate_pool_molC -= shoot_growth_carbon_demand; //Subtract construction carbon + growth respiration from the carbon pool
+
214 shoot->old_shoot_volume = shoot_volume; //Set old volume to the current volume for the next timestep
215
-
216 }
+
216 }
217
-
218}
+
218 }
219
-
220
-
221float Phytomer::calculateFruitConstructionCosts(const FloralBud &fbud) {
+
220}
+
221
222
-
223 //\todo make these values externally settable
-
224 float fruit_construction_cost_base = 29021; //mol C/m^3
-
225
-
226 float fruit_carbon_cost = 0.f; //mol C
+
223float Phytomer::calculateFruitConstructionCosts(const FloralBud &fbud) {
+
224
+
225 //\todo make these values externally settable
+
226 float fruit_construction_cost_base = 29021; //mol C/m^3
227
-
228 //fruit (cost per fruit basis)
-
229 for( uint fruit_objID : fbud.inflorescence_objIDs ) {
-
230 float mature_volume = context_ptr->getPolymeshObjectVolume(fruit_objID)/fbud.current_fruit_scale_factor; //mature fruit volume
-
231 fruit_carbon_cost += fruit_construction_cost_base*(mature_volume)*(fbud.current_fruit_scale_factor - fbud.previous_fruit_scale_factor);
-
232 }
-
233
-
234 return fruit_carbon_cost;
-
235}
-
236
-
237void PlantArchitecture::checkCarbonPool_abortbuds(){
-
238 float carbohydrate_threshold = 0; //mol C/m3
-
239 float day_threshold = 3;
-
240 float storage_conductance = 0.5;
-
241
-
242 //\todo make these values externally settable
-
243 float fruit_construction_cost_base = 29021; //mol C/m^3
-
244
-
245 for( auto &plant: plant_instances ){
+
228 float fruit_carbon_cost = 0.f; //mol C
+
229
+
230 //fruit (cost per fruit basis)
+
231 for( uint fruit_objID : fbud.inflorescence_objIDs ) {
+
232 float mature_volume = context_ptr->getPolymeshObjectVolume(fruit_objID)/fbud.current_fruit_scale_factor; //mature fruit volume
+
233 fruit_carbon_cost += fruit_construction_cost_base*(mature_volume)*(fbud.current_fruit_scale_factor - fbud.previous_fruit_scale_factor);
+
234 }
+
235
+
236 return fruit_carbon_cost;
+
237}
+
238
+
239void PlantArchitecture::checkCarbonPool_abortbuds(){
+
240 float carbohydrate_threshold = 0; //mol C/m3
+
241 float day_threshold = 3;
+
242 float storage_conductance = 0.5;
+
243
+
244 //\todo make these values externally settable
+
245 float fruit_construction_cost_base = 29021; //mol C/m^3
246
-
247 uint plantID = plant.first;
-
248 auto shoot_tree = &plant.second.shoot_tree;
-
249 auto shoot_tree_ptr = &plant_instances.at(plantID).shoot_tree;
-
250
-
251 for( auto &shoot: *shoot_tree ){
+
247 for( auto &plant: plant_instances ){
+
248
+
249 uint plantID = plant.first;
+
250 auto shoot_tree = &plant.second.shoot_tree;
+
251 auto shoot_tree_ptr = &plant_instances.at(plantID).shoot_tree;
252
-
253 uint shootID = shoot->ID;
+
253 for( auto &shoot: *shoot_tree ){
254
-
255 float shoot_volume = plant_instances.at(plantID).shoot_tree.at(shootID)->calculateShootInternodeVolume();
-
256 float working_carb_pool = shoot->carbohydrate_pool_molC;
-
257 uint parentID = shoot->parent_shoot_ID;
-
258
-
259
-
260 for(auto &child : shoot->childIDs ){
+
255 uint shootID = shoot->ID;
+
256
+
257 float shoot_volume = plant_instances.at(plantID).shoot_tree.at(shootID)->calculateShootInternodeVolume();
+
258 float working_carb_pool = shoot->carbohydrate_pool_molC;
+
259 uint parentID = shoot->parent_shoot_ID;
+
260
261
-
262 int node_number = child.first;
-
263 int child_ID = child.second;
-
264
-
265 }
+
262 for(auto node : shoot->childIDs ){
+
263 for( int childID : node.second ){
+
264 int node_number = node.first;
+
265 int child_ID = childID;
266
-
267
-
268 if(shoot->carbohydrate_pool_molC >= carbohydrate_threshold*shoot_volume){
-
269 shoot_tree_ptr->at(parentID)->carbohydrate_pool_molC += (shoot->carbohydrate_pool_molC - carbohydrate_threshold*shoot_volume)*storage_conductance;
-
270 shoot->carbohydrate_pool_molC -= (shoot->carbohydrate_pool_molC - carbohydrate_threshold*shoot_volume)*storage_conductance;
-
271 shoot->days_with_negative_carbon_balance = 0;
-
272
-
273 }else if(shoot->days_with_negative_carbon_balance <= day_threshold){
-
274 shoot->days_with_negative_carbon_balance += 1;
-
275 }else if(shoot->days_with_negative_carbon_balance > day_threshold) {
-
276
-
277 auto phytomers = &shoot->phytomers;
-
278
-
279 bool living_buds = true;
-
280
-
281 while (living_buds) {
-
282
-
283 living_buds = false;
-
284
-
285 for (auto &phytomer: *phytomers) {
-
286 for (auto &petiole: phytomer->floral_buds) {
-
287 //all currently active lateral buds die at dormancy
-
288 for (auto &fbud: petiole) {
-
289 if (fbud.state != BUD_DORMANT && fbud.state != BUD_DEAD) {
-
290 for (uint fruit_objID: fbud.inflorescence_objIDs) {
-
291 float mature_volume = context_ptr->getPolymeshObjectVolume(fruit_objID) /
-
292 fbud.current_fruit_scale_factor; //mature fruit volume
-
293 working_carb_pool += fruit_construction_cost_base * (mature_volume) *
-
294 (fbud.current_fruit_scale_factor -
-
295 fbud.previous_fruit_scale_factor);
-
296 }
-
297 phytomer->setFloralBudState(BUD_DEAD, fbud);
-
298 break;
-
299
-
300 }else{
-
301 living_buds = true;
-
302 }
-
303 }
-
304 break;
-
305 }
-
306 if (working_carb_pool > carbohydrate_threshold) {
-
307 living_buds = false;
-
308 break;
-
309 }
-
310
-
311 }
-
312
-
313 }
-
314
+
267 }
+
268 }
+
269
+
270
+
271 if(shoot->carbohydrate_pool_molC >= carbohydrate_threshold*shoot_volume){
+
272 shoot_tree_ptr->at(parentID)->carbohydrate_pool_molC += (shoot->carbohydrate_pool_molC - carbohydrate_threshold*shoot_volume)*storage_conductance;
+
273 shoot->carbohydrate_pool_molC -= (shoot->carbohydrate_pool_molC - carbohydrate_threshold*shoot_volume)*storage_conductance;
+
274 shoot->days_with_negative_carbon_balance = 0;
+
275
+
276 }else if(shoot->days_with_negative_carbon_balance <= day_threshold){
+
277 shoot->days_with_negative_carbon_balance += 1;
+
278 }else if(shoot->days_with_negative_carbon_balance > day_threshold) {
+
279
+
280 auto phytomers = &shoot->phytomers;
+
281
+
282 bool living_buds = true;
+
283
+
284 while (living_buds) {
+
285
+
286 living_buds = false;
+
287
+
288 for (auto &phytomer: *phytomers) {
+
289 for (auto &petiole: phytomer->floral_buds) {
+
290 //all currently active lateral buds die at dormancy
+
291 for (auto &fbud: petiole) {
+
292 if (fbud.state != BUD_DORMANT && fbud.state != BUD_DEAD) {
+
293 for (uint fruit_objID: fbud.inflorescence_objIDs) {
+
294 float mature_volume = context_ptr->getPolymeshObjectVolume(fruit_objID) /
+
295 fbud.current_fruit_scale_factor; //mature fruit volume
+
296 working_carb_pool += fruit_construction_cost_base * (mature_volume) *
+
297 (fbud.current_fruit_scale_factor -
+
298 fbud.previous_fruit_scale_factor);
+
299 }
+
300 phytomer->setFloralBudState(BUD_DEAD, fbud);
+
301 break;
+
302
+
303 }else{
+
304 living_buds = true;
+
305 }
+
306 }
+
307 break;
+
308 }
+
309 if (working_carb_pool > carbohydrate_threshold) {
+
310 living_buds = false;
+
311 break;
+
312 }
+
313
+
314 }
315
-
316 }
+
316 }
317
-
318 }
-
319
-
320 }
-
321
-
322}
+
318
+
319 }
+
320
+
321 }
+
322
+
323 }
+
324
+
325}
-
helios::Context::getTubeObjectSegmentVolume
float getTubeObjectSegmentVolume(uint ObjID, uint segment_index) const
get the volume of a segment within a Tube object
Definition Context.cpp:8053
-
helios::Context::getPrimitiveArea
float getPrimitiveArea(uint UUID) const
Method to return the surface area of a Primitive.
Definition Context.cpp:6930
+
helios::Context::getTubeObjectSegmentVolume
float getTubeObjectSegmentVolume(uint ObjID, uint segment_index) const
get the volume of a segment within a Tube object
Definition Context.cpp:8120
+
helios::Context::getPrimitiveArea
float getPrimitiveArea(uint UUID) const
Method to return the surface area of a Primitive.
Definition Context.cpp:6997
helios::Context::getPrimitiveData
void getPrimitiveData(uint UUID, const char *label, int &data) const
Get data associated with a primitive element.
Definition Context_data.cpp:1001
-
helios::Context::getTubeObjectVolume
float getTubeObjectVolume(uint ObjID) const
get the volume of a Tube object from the context
Definition Context.cpp:8049
+
helios::Context::getTubeObjectVolume
float getTubeObjectVolume(uint ObjID) const
get the volume of a Tube object from the context
Definition Context.cpp:8116
helios::Context::doesPrimitiveDataExist
bool doesPrimitiveDataExist(uint UUID, const char *label) const
Check if primitive data 'label' exists.
Definition Context_data.cpp:1169
-
helios::Context::getObjectPrimitiveUUIDs
std::vector< uint > getObjectPrimitiveUUIDs(uint ObjID) const
Get primitive UUIDs associated with compound object (single object ID input)
Definition Context.cpp:2892
+
helios::Context::getObjectPrimitiveUUIDs
std::vector< uint > getObjectPrimitiveUUIDs(uint ObjID) const
Get primitive UUIDs associated with compound object (single object ID input)
Definition Context.cpp:2887
+
helios::Context::doesObjectExist
bool doesObjectExist(uint ObjID) const
Check whether Compound Object exists in the Context.
Definition Context.cpp:2565
helios::Context::getPrimitiveDataType
HeliosDataType getPrimitiveDataType(uint UUID, const char *label) const
Get the Helios data type of primitive data.
Definition Context_data.cpp:1155
-
helios::Context::getObjectArea
float getObjectArea(uint ObjID) const
Method to return the one-sided surface area of an object.
Definition Context.cpp:7797
-
helios::Context::getPolymeshObjectVolume
float getPolymeshObjectVolume(uint ObjID) const
Get the volume of a Polygon Mesh object from the context.
Definition Context.cpp:8159
+
helios::Context::getObjectArea
float getObjectArea(uint ObjID) const
Method to return the one-sided surface area of an object.
Definition Context.cpp:7864
+
helios::Context::getPolymeshObjectVolume
float getPolymeshObjectVolume(uint ObjID) const
Get the volume of a Polygon Mesh object from the context.
Definition Context.cpp:8226
helios::Context::setPrimitiveData
void setPrimitiveData(const uint &UUID, const char *label, const int &data)
Add data value (int) associated with a primitive element.
Definition Context_data.cpp:655
helios::helios_runtime_error
void helios_runtime_error(const std::string &error_message)
Function to throw a runtime error.
Definition global.cpp:29
-
helios::flatten
std::vector< int > flatten(const std::vector< std::vector< int > > &vec)
Function to flatten a 2D int vector into a 1D vector.
Definition global.cpp:1859
- -
Phytomer::shoot_index
helios::int3 shoot_index
.x = index of phytomer along shoot, .y = current number of phytomers on parent shoot,...
Definition PlantArchitecture.h:751
+
helios::flatten
std::vector< int > flatten(const std::vector< std::vector< int > > &vec)
Function to flatten a 2D int vector into a 1D vector.
Definition global.cpp:1861
+ +
Phytomer::shoot_index
helios::int3 shoot_index
.x = index of phytomer along shoot, .y = current number of phytomers on parent shoot,...
Definition PlantArchitecture.h:767
helios::int3::x
int x
First element in vector.
Definition helios_vector_types.h:150
diff --git a/doc/html/_choosing_c_u_d_a.html b/doc/html/_choosing_c_u_d_a.html index c0a3bb0ec..6ad24486f 100644 --- a/doc/html/_choosing_c_u_d_a.html +++ b/doc/html/_choosing_c_u_d_a.html @@ -38,7 +38,7 @@ diff --git a/doc/html/_context_8cpp.html b/doc/html/_context_8cpp.html index 0349f4188..3e769a5bd 100644 --- a/doc/html/_context_8cpp.html +++ b/doc/html/_context_8cpp.html @@ -38,7 +38,7 @@ diff --git a/doc/html/_context_8cpp_source.html b/doc/html/_context_8cpp_source.html index abb2bca58..a4669becc 100644 --- a/doc/html/_context_8cpp_source.html +++ b/doc/html/_context_8cpp_source.html @@ -38,7 +38,7 @@ @@ -164,8822 +164,8889 @@
66}
67
68bool Context::doesTextureFileExist(const char* texture_file ) const{
-
69 if (FILE *file = fopen(texture_file, "r")) {
-
70 fclose(file);
-
71 return true;
-
72 } else {
-
73 return false;
-
74 }
-
75}
-
76
-
77bool Context::validateTextureFileExtenstion( const char* texture_file ) const{
-
78 const std::string &fn = texture_file;
-
79 const std::string &ext = getFileExtension(fn);
-
80 if( ext != ".png" && ext != ".PNG" && ext != ".jpg" && ext != ".jpeg" && ext != ".JPG" && ext != ".JPEG" ){
-
81 return false;
-
82 }else{
-
83 return true;
-
84 }
-
85}
+
69 return std::filesystem::exists(texture_file);
+
70}
+
71
+
72bool Context::validateTextureFileExtenstion( const char* texture_file ) const{
+
73 const std::string &fn = texture_file;
+
74 const std::string &ext = getFileExtension(fn);
+
75 if( ext != ".png" && ext != ".PNG" && ext != ".jpg" && ext != ".jpeg" && ext != ".JPG" && ext != ".JPEG" ){
+
76 return false;
+
77 }else{
+
78 return true;
+
79 }
+
80}
+
81
+
+
82Texture::Texture( const char* texture_file ){
+
83 filename = texture_file;
+
84
+
85 //------ determine if transparency channel exists ---------//
86
-
-
87Texture::Texture( const char* texture_file ){
-
88 filename = texture_file;
-
89
-
90 //------ determine if transparency channel exists ---------//
-
91
-
92 //check if texture file has extension ".png"
-
93 const std::string &ext = getFileExtension(filename);
-
94 if( ext!=".png" ){
-
95 hastransparencychannel = false;
-
96 }else{
-
97 hastransparencychannel = PNGHasAlpha( filename.c_str() );
-
98 }
-
99
-
100 //-------- load transparency channel (if exists) ------------//
-
101
-
102 if( hastransparencychannel ){
-
103 transparencydata = readPNGAlpha( filename );
-
104 image_resolution = make_int2(int(transparencydata.front().size()),int(transparencydata.size()));
-
105 }else{
-
106 image_resolution = getImageResolutionJPEG( texture_file );
-
107 }
-
108
-
109 //-------- determine solid fraction --------------//
-
110
-
111 if( hastransparencychannel ){
-
112 size_t p = 0.f;
-
113 for( auto & j : transparencydata ){
-
114 for( bool transparency : j ){
-
115 if( transparency ){
-
116 p += 1;
-
117 }
-
118 }
-
119 }
-
120 float sf = float(p)/float(transparencydata.size()*transparencydata.front().size());
-
121 if( sf!=sf ){
-
122 sf = 0.f;
-
123 }
-
124 solidfraction = sf;
-
125 }else{
-
126 solidfraction = 1.f;
-
127 }
-
128
-
129
-
130}
-
-
131
-
-
132std::string Texture::getTextureFile() const{
-
133 return filename;
-
134}
-
-
135
-
-
136helios::int2 Texture::getImageResolution()const {
-
137 return image_resolution;
-
138}
-
-
139
-
-
140bool Texture::hasTransparencyChannel() const{
-
141 return hastransparencychannel;
-
142}
-
-
143
-
-
144const std::vector<std::vector<bool> >* Texture::getTransparencyData() const{
-
145 return &transparencydata;
-
146}
-
-
147
-
-
148float Texture::getSolidFraction() const{
-
149 return solidfraction;
-
150}
-
-
151
-
-
152void Context::markGeometryClean(){
-
153 isgeometrydirty = false;
-
154}
-
-
155
-
-
156void Context::markGeometryDirty(){
-
157 isgeometrydirty = true;
-
158}
-
-
159
-
-
160bool Context::isGeometryDirty() const{
-
161 return isgeometrydirty;
-
162}
-
-
163
-
164uint Primitive::getUUID() const{
-
165 return UUID;
-
166}
-
167
-
168PrimitiveType Primitive::getType() const{
-
169 return prim_type;
-
170}
-
171
-
172void Primitive::setParentObjectID(uint objID ){
-
173 parent_object_ID = objID;
-
174}
-
175
-
176uint Primitive::getParentObjectID() const{
-
177 return parent_object_ID;
-
178}
-
179
-
180void Primitive::getTransformationMatrix( float (&T)[16] )const {
-
181 for( int i=0; i<16; i++ ){
-
182 T[i]=transform[i];
-
183 }
-
184}
-
185
-
186void Primitive::setTransformationMatrix( float (&T)[16] ){
+
87 //check if texture file has extension ".png"
+
88 const std::string &ext = getFileExtension(filename);
+
89 if( ext!=".png" ){
+
90 hastransparencychannel = false;
+
91 }else{
+
92 hastransparencychannel = PNGHasAlpha( filename.c_str() );
+
93 }
+
94
+
95 //-------- load transparency channel (if exists) ------------//
+
96
+
97 if( ext==".png" ){
+
98 transparencydata = readPNGAlpha( filename );
+
99 image_resolution = make_int2(int(transparencydata.front().size()),int(transparencydata.size()));
+
100 }else{
+
101 image_resolution = getImageResolutionJPEG( texture_file );
+
102 }
+
103
+
104 //-------- determine solid fraction --------------//
+
105
+
106 if( hastransparencychannel ){
+
107 size_t p = 0.f;
+
108 for( auto & j : transparencydata ){
+
109 for( bool transparency : j ){
+
110 if( transparency ){
+
111 p += 1;
+
112 }
+
113 }
+
114 }
+
115 float sf = float(p)/float(transparencydata.size()*transparencydata.front().size());
+
116 if( sf!=sf ){
+
117 sf = 0.f;
+
118 }
+
119 solidfraction = sf;
+
120 }else{
+
121 solidfraction = 1.f;
+
122 }
+
123
+
124
+
125}
+
+
126
+
+
127std::string Texture::getTextureFile() const{
+
128 return filename;
+
129}
+
+
130
+
+
131helios::int2 Texture::getImageResolution()const {
+
132 return image_resolution;
+
133}
+
+
134
+
+
135bool Texture::hasTransparencyChannel() const{
+
136 return hastransparencychannel;
+
137}
+
+
138
+
+
139const std::vector<std::vector<bool> >* Texture::getTransparencyData() const{
+
140 return &transparencydata;
+
141}
+
+
142
+
+
143float Texture::getSolidFraction() const{
+
144 return solidfraction;
+
145}
+
+
146
+
+
147void Context::markGeometryClean(){
+
148 isgeometrydirty = false;
+
149}
+
+
150
+
+
151void Context::markGeometryDirty(){
+
152 isgeometrydirty = true;
+
153}
+
+
154
+
+
155bool Context::isGeometryDirty() const{
+
156 return isgeometrydirty;
+
157}
+
+
158
+
159uint Primitive::getUUID() const{
+
160 return UUID;
+
161}
+
162
+
163PrimitiveType Primitive::getType() const{
+
164 return prim_type;
+
165}
+
166
+
167void Primitive::setParentObjectID(uint objID ){
+
168 parent_object_ID = objID;
+
169}
+
170
+
171uint Primitive::getParentObjectID() const{
+
172 return parent_object_ID;
+
173}
+
174
+
175void Primitive::getTransformationMatrix( float (&T)[16] )const {
+
176 for( int i=0; i<16; i++ ){
+
177 T[i]=transform[i];
+
178 }
+
179}
+
180
+
181void Primitive::setTransformationMatrix( float (&T)[16] ){
+
182
+
183 for( int i=0; i<16; i++ ){
+
184 transform[i] = T[i];
+
185 }
+
186}
187
-
188 for( int i=0; i<16; i++ ){
-
189 transform[i] = T[i];
-
190 }
-
191}
-
192
-
193float Patch::getArea() const{
-
194
-
195 const vec2 &size = getSize();
-
196
-
197 return size.x*size.y*solid_fraction;
-
198
-
199}
-
200
-
201float Triangle::getArea() const{
+
188float Patch::getArea() const{
+
189
+
190 const vec2 &size = getSize();
+
191
+
192 return size.x*size.y*solid_fraction;
+
193
+
194}
+
195
+
196float Triangle::getArea() const{
+
197
+
198 const std::vector<vec3> &vertices = getVertices();
+
199
+
200 float area = calculateTriangleArea( vertices.at(0), vertices.at(1), vertices.at(2) );
+
201 return area*solid_fraction;
202
-
203 const std::vector<vec3> &vertices = getVertices();
+
203}
204
-
205 float area = calculateTriangleArea( vertices.at(0), vertices.at(1), vertices.at(2) );
-
206 return area*solid_fraction;
-
207
-
208}
-
209
-
210float Voxel::getArea() const{
-
211
-
212 const vec3 size(transform[0],transform[5],transform[10]);
-
213
-
214 return 2.f*size.x*size.y+2*size.x*size.z+2*size.y*size.z;
-
215
-
216}
-
217
-
218vec3 Patch::getNormal() const{
-
219
-
220 vec3 normal(transform[2],transform[6],transform[10]);
-
221
-
222 normal.normalize();
-
223
-
224 return normal;
-
225
-
226}
-
227
-
228vec3 Triangle::getNormal() const{
-
229 const std::vector<vec3> &vertices = getVertices();
-
230 vec3 norm = cross(vertices.at(1)-vertices.at(0),vertices.at(2)-vertices.at(1));
-
231 norm.normalize();
-
232 return norm;
-
233}
-
234
-
235vec3 Voxel::getNormal() const{
-
236 return nullorigin;
-
237}
-
238
-
239std::vector<vec3> Patch::getVertices() const{
-
240
-
241 vec3 Y[4];
-
242 std::vector<vec3> vertices;
-
243 vertices.resize(4);
-
244 Y[0] = make_vec3( -0.5f, -0.5f, 0.f);
-
245 Y[1] = make_vec3( 0.5f, -0.5f, 0.f);
-
246 Y[2] = make_vec3( 0.5f, 0.5f, 0.f);
-
247 Y[3] = make_vec3( -0.5f, 0.5f, 0.f);
-
248
-
249 for( int i=0; i<4; i++ ){
-
250 vertices[i].x = transform[0] * Y[i].x + transform[1] * Y[i].y + transform[2] * Y[i].z + transform[3];
-
251 vertices[i].y = transform[4] * Y[i].x + transform[5] * Y[i].y + transform[6] * Y[i].z + transform[7];
-
252 vertices[i].z = transform[8] * Y[i].x + transform[9] * Y[i].y + transform[10] * Y[i].z + transform[11];
-
253 }
-
254 return vertices;
-
255}
-
256
-
257std::vector<vec3> Triangle::getVertices() const{
-
258
-
259 vec3 Y[3];
-
260 std::vector<vec3> vertices;
-
261 vertices.resize(3);
-
262 Y[0] = make_vec3( 0.f, 0.f, 0.f);
-
263 Y[1] = make_vec3( 0.f, 1.f, 0.f);
-
264 Y[2] = make_vec3( 1.f, 1.f, 0.f);
-
265
-
266 for( int i=0; i<3; i++ ){
-
267 vertices[i].x = transform[0] * Y[i].x + transform[1] * Y[i].y + transform[2] * Y[i].z + transform[3];
-
268 vertices[i].y = transform[4] * Y[i].x + transform[5] * Y[i].y + transform[6] * Y[i].z + transform[7];
-
269 vertices[i].z = transform[8] * Y[i].x + transform[9] * Y[i].y + transform[10] * Y[i].z + transform[11];
-
270 }
-
271 return vertices;
-
272
-
273}
-
274
-
275std::vector<vec3> Voxel::getVertices() const{
-
276
-
277 vec3 Y[8];
-
278 std::vector<vec3> vertices;
-
279 vertices.resize(8);
-
280 Y[0] = make_vec3( -0.5f, -0.5f, -0.5f);
-
281 Y[1] = make_vec3( 0.5f, -0.5f, -0.5f);
-
282 Y[2] = make_vec3( 0.5f, 0.5f, -0.5f);
-
283 Y[3] = make_vec3( -0.5f, 0.5f, -0.5f);
-
284 Y[4] = make_vec3( -0.5f, -0.5f, 0.5f);
-
285 Y[5] = make_vec3( 0.5f, -0.5f, 0.5f);
-
286 Y[6] = make_vec3( 0.5f, 0.5f, 0.5f);
-
287 Y[7] = make_vec3( -0.5f, 0.5f, 0.5f);
-
288
-
289 for( int i=0; i<8; i++ ){
-
290 vertices[i].x = transform[0] * Y[i].x + transform[1] * Y[i].y + transform[2] * Y[i].z + transform[3];
-
291 vertices[i].y = transform[4] * Y[i].x + transform[5] * Y[i].y + transform[6] * Y[i].z + transform[7];
-
292 vertices[i].z = transform[8] * Y[i].x + transform[9] * Y[i].y + transform[10] * Y[i].z + transform[11];
-
293 }
-
294 return vertices;
-
295}
-
296
-
297RGBcolor Primitive::getColor() const{
-
298 return make_RGBcolor(color.r,color.g,color.b);
-
299}
-
300
-
301RGBcolor Primitive::getColorRGB() const{
-
302 return make_RGBcolor(color.r,color.g,color.b);
-
303}
-
304
-
305RGBAcolor Primitive::getColorRGBA() const{
-
306 return color;
-
307}
-
308
-
309void Primitive::setColor( const helios::RGBcolor& newcolor ){
+
205float Voxel::getArea() const{
+
206
+
207 const vec3 size(transform[0],transform[5],transform[10]);
+
208
+
209 return 2.f*size.x*size.y+2*size.x*size.z+2*size.y*size.z;
+
210
+
211}
+
212
+
213vec3 Patch::getNormal() const{
+
214
+
215 vec3 normal(transform[2],transform[6],transform[10]);
+
216
+
217 normal.normalize();
+
218
+
219 return normal;
+
220
+
221}
+
222
+
223vec3 Triangle::getNormal() const{
+
224 const std::vector<vec3> &vertices = getVertices();
+
225 vec3 norm = cross(vertices.at(1)-vertices.at(0),vertices.at(2)-vertices.at(1));
+
226 norm.normalize();
+
227 return norm;
+
228}
+
229
+
230vec3 Voxel::getNormal() const{
+
231 return nullorigin;
+
232}
+
233
+
234std::vector<vec3> Patch::getVertices() const{
+
235
+
236 vec3 Y[4];
+
237 std::vector<vec3> vertices;
+
238 vertices.resize(4);
+
239 Y[0] = make_vec3( -0.5f, -0.5f, 0.f);
+
240 Y[1] = make_vec3( 0.5f, -0.5f, 0.f);
+
241 Y[2] = make_vec3( 0.5f, 0.5f, 0.f);
+
242 Y[3] = make_vec3( -0.5f, 0.5f, 0.f);
+
243
+
244 for( int i=0; i<4; i++ ){
+
245 vertices[i].x = transform[0] * Y[i].x + transform[1] * Y[i].y + transform[2] * Y[i].z + transform[3];
+
246 vertices[i].y = transform[4] * Y[i].x + transform[5] * Y[i].y + transform[6] * Y[i].z + transform[7];
+
247 vertices[i].z = transform[8] * Y[i].x + transform[9] * Y[i].y + transform[10] * Y[i].z + transform[11];
+
248 }
+
249 return vertices;
+
250}
+
251
+
252std::vector<vec3> Triangle::getVertices() const{
+
253
+
254 vec3 Y[3];
+
255 std::vector<vec3> vertices;
+
256 vertices.resize(3);
+
257 Y[0] = make_vec3( 0.f, 0.f, 0.f);
+
258 Y[1] = make_vec3( 0.f, 1.f, 0.f);
+
259 Y[2] = make_vec3( 1.f, 1.f, 0.f);
+
260
+
261 for( int i=0; i<3; i++ ){
+
262 vertices[i].x = transform[0] * Y[i].x + transform[1] * Y[i].y + transform[2] * Y[i].z + transform[3];
+
263 vertices[i].y = transform[4] * Y[i].x + transform[5] * Y[i].y + transform[6] * Y[i].z + transform[7];
+
264 vertices[i].z = transform[8] * Y[i].x + transform[9] * Y[i].y + transform[10] * Y[i].z + transform[11];
+
265 }
+
266 return vertices;
+
267
+
268}
+
269
+
270std::vector<vec3> Voxel::getVertices() const{
+
271
+
272 vec3 Y[8];
+
273 std::vector<vec3> vertices;
+
274 vertices.resize(8);
+
275 Y[0] = make_vec3( -0.5f, -0.5f, -0.5f);
+
276 Y[1] = make_vec3( 0.5f, -0.5f, -0.5f);
+
277 Y[2] = make_vec3( 0.5f, 0.5f, -0.5f);
+
278 Y[3] = make_vec3( -0.5f, 0.5f, -0.5f);
+
279 Y[4] = make_vec3( -0.5f, -0.5f, 0.5f);
+
280 Y[5] = make_vec3( 0.5f, -0.5f, 0.5f);
+
281 Y[6] = make_vec3( 0.5f, 0.5f, 0.5f);
+
282 Y[7] = make_vec3( -0.5f, 0.5f, 0.5f);
+
283
+
284 for( int i=0; i<8; i++ ){
+
285 vertices[i].x = transform[0] * Y[i].x + transform[1] * Y[i].y + transform[2] * Y[i].z + transform[3];
+
286 vertices[i].y = transform[4] * Y[i].x + transform[5] * Y[i].y + transform[6] * Y[i].z + transform[7];
+
287 vertices[i].z = transform[8] * Y[i].x + transform[9] * Y[i].y + transform[10] * Y[i].z + transform[11];
+
288 }
+
289 return vertices;
+
290}
+
291
+
292RGBcolor Primitive::getColor() const{
+
293 return make_RGBcolor(color.r,color.g,color.b);
+
294}
+
295
+
296RGBcolor Primitive::getColorRGB() const{
+
297 return make_RGBcolor(color.r,color.g,color.b);
+
298}
+
299
+
300RGBAcolor Primitive::getColorRGBA() const{
+
301 return color;
+
302}
+
303
+
304void Primitive::setColor( const helios::RGBcolor& newcolor ){
+
305
+
306 // if( parent_object_ID!=0 ){
+
307 // std::cout << "WARNING (Primitive::setColor): Cannot set the color of individual primitives within a compound object. Use the setter function for objects." << std::endl;
+
308 // return;
+
309 // }
310
-
311 // if( parent_object_ID!=0 ){
-
312 // std::cout << "WARNING (Primitive::setColor): Cannot set the color of individual primitives within a compound object. Use the setter function for objects." << std::endl;
-
313 // return;
-
314 // }
-
315
-
316 color = make_RGBAcolor(newcolor,1);
-
317
-
318}
-
319
-
320void Primitive::setColor( const helios::RGBAcolor& newcolor ){
+
311 color = make_RGBAcolor(newcolor,1);
+
312
+
313}
+
314
+
315void Primitive::setColor( const helios::RGBAcolor& newcolor ){
+
316
+
317 // if( parent_object_ID!=0 ){
+
318 // std::cout << "WARNING (Primitive::setColor): Cannot set the color of individual primitives within a compound object. Use the setter function for objects." << std::endl;
+
319 // return;
+
320 // }
321
-
322 // if( parent_object_ID!=0 ){
-
323 // std::cout << "WARNING (Primitive::setColor): Cannot set the color of individual primitives within a compound object. Use the setter function for objects." << std::endl;
-
324 // return;
-
325 // }
-
326
-
327 color = newcolor;
-
328
-
329}
-
330
-
331bool Primitive::hasTexture() const{
-
332 if( texturefile.empty() ){
-
333 return false;
-
334 }else{
-
335 return true;
-
336 }
-
337}
-
338
-
339std::string Primitive::getTextureFile() const{
-
340 return texturefile;
-
341}
-
342
-
343void Primitive::setTextureFile( const char* texture ){
-
344 texturefile = texture;
-
345}
-
346
-
347std::vector<vec2> Primitive::getTextureUV(){
-
348 return uv;
-
349}
-
350
-
351void Primitive::setTextureUV( const std::vector<vec2> &a_uv ){
-
352 uv = a_uv;
-
353}
-
354
-
355void Primitive::overrideTextureColor(){
+
322 color = newcolor;
+
323
+
324}
+
325
+
326bool Primitive::hasTexture() const{
+
327 if( texturefile.empty() ){
+
328 return false;
+
329 }else{
+
330 return true;
+
331 }
+
332}
+
333
+
334std::string Primitive::getTextureFile() const{
+
335 return texturefile;
+
336}
+
337
+
338void Primitive::setTextureFile( const char* texture ){
+
339 texturefile = texture;
+
340}
+
341
+
342std::vector<vec2> Primitive::getTextureUV(){
+
343 return uv;
+
344}
+
345
+
346void Primitive::setTextureUV( const std::vector<vec2> &a_uv ){
+
347 uv = a_uv;
+
348}
+
349
+
350void Primitive::overrideTextureColor(){
+
351
+
352 // if( parent_object_ID!=0 ){
+
353 // std::cout << "WARNING (Primitive::overrideTextureColor): Cannot set the texture options of individual primitives within a compound object. Use the setter function for objects." << std::endl;
+
354 // return;
+
355 // }
356
-
357 // if( parent_object_ID!=0 ){
-
358 // std::cout << "WARNING (Primitive::overrideTextureColor): Cannot set the texture options of individual primitives within a compound object. Use the setter function for objects." << std::endl;
-
359 // return;
-
360 // }
+
357 texturecoloroverridden = true;
+
358}
+
359
+
360void Primitive::useTextureColor(){
361
-
362 texturecoloroverridden = true;
-
363}
-
364
-
365void Primitive::useTextureColor(){
+
362 // if( parent_object_ID!=0 ){
+
363 // std::cout << "WARNING (Primitive::useTextureColor): Cannot set the texture options of individual primitives within a compound object. Use the setter function for objects." << std::endl;
+
364 // return;
+
365 // }
366
-
367 // if( parent_object_ID!=0 ){
-
368 // std::cout << "WARNING (Primitive::useTextureColor): Cannot set the texture options of individual primitives within a compound object. Use the setter function for objects." << std::endl;
-
369 // return;
-
370 // }
-
371
-
372 texturecoloroverridden = false;
-
373}
-
374
-
375bool Primitive::isTextureColorOverridden() const{
-
376 return texturecoloroverridden;
-
377}
-
378
-
379float Primitive::getSolidFraction() const{
-
380 return solid_fraction;
-
381}
-
382
-
383void Primitive::setSolidFraction( float solidFraction ){
-
384 solid_fraction = solidFraction;
-
385}
-
386
-
387void Patch::calculateSolidFraction( const std::map<std::string,Texture> &textures ){
-
388
-
389 if( textures.at(texturefile).hasTransparencyChannel() ){
-
390 const std::vector<std::vector<bool> >* alpha = textures.at(texturefile).getTransparencyData();
-
391 int A = 0;
-
392 int At = 0;
-
393 const int2 &sz = textures.at(texturefile).getImageResolution();
-
394 int2 uv_min( std::max(0,(int)roundf(uv.at(0).x*float(sz.x))), std::max(0,(int)roundf((1.f-uv.at(2).y)*float(sz.y))) );
-
395 int2 uv_max( std::min(sz.x-1,(int)roundf(uv.at(2).x*float(sz.x))), std::min(sz.y-1,(int)roundf((1.f-uv.at(0).y)*float(sz.y))) );
-
396 for( int j=uv_min.y; j<uv_max.y; j++ ){
-
397 for( int i=uv_min.x; i<uv_max.x; i++ ){
-
398 At += 1;
-
399 if( alpha->at(j).at(i) ){
-
400 A += 1;
-
401 }
-
402 }
+
367 texturecoloroverridden = false;
+
368}
+
369
+
370bool Primitive::isTextureColorOverridden() const{
+
371 return texturecoloroverridden;
+
372}
+
373
+
374float Primitive::getSolidFraction() const{
+
375 return solid_fraction;
+
376}
+
377
+
378void Primitive::setSolidFraction( float solidFraction ){
+
379 solid_fraction = solidFraction;
+
380}
+
381
+
382void Patch::calculateSolidFraction( const std::map<std::string,Texture> &textures ){
+
383
+
384 if( textures.at(texturefile).hasTransparencyChannel() ){
+
385 const std::vector<std::vector<bool> >* alpha = textures.at(texturefile).getTransparencyData();
+
386 int A = 0;
+
387 int At = 0;
+
388 const int2 &sz = textures.at(texturefile).getImageResolution();
+
389 int2 uv_min( std::max(0,(int)roundf(uv.at(0).x*float(sz.x))), std::max(0,(int)roundf((1.f-uv.at(2).y)*float(sz.y))) );
+
390 int2 uv_max( std::min(sz.x-1,(int)roundf(uv.at(2).x*float(sz.x))), std::min(sz.y-1,(int)roundf((1.f-uv.at(0).y)*float(sz.y))) );
+
391 for( int j=uv_min.y; j<uv_max.y; j++ ){
+
392 for( int i=uv_min.x; i<uv_max.x; i++ ){
+
393 At += 1;
+
394 if( alpha->at(j).at(i) ){
+
395 A += 1;
+
396 }
+
397 }
+
398 }
+
399 if( At==0 ){
+
400 solid_fraction = 0;
+
401 }else{
+
402 solid_fraction = float(A)/float(At);
403 }
-
404 if( At==0 ){
-
405 solid_fraction = 0;
-
406 }else{
-
407 solid_fraction = float(A)/float(At);
-
408 }
-
409 }else{
-
410 solid_fraction = 1.f;
-
411 }
-
412
-
413}
-
414
-
415void Triangle::calculateSolidFraction( const std::map<std::string,Texture> &textures ){
-
416
-
417 if( textures.at(texturefile).hasTransparencyChannel() ){
-
418 const std::vector<std::vector<bool> >* alpha = textures.at(texturefile).getTransparencyData();
-
419 const int2 &sz = textures.at(texturefile).getImageResolution();
-
420 int2 uv_min( std::max(0,(int)round(fminf(fminf(uv.at(0).x,uv.at(1).x),uv.at(2).x)*float(sz.x))), std::max(0,(int)round(fmin(fminf(uv.at(0).y,uv.at(1).y),uv.at(2).y)*float(sz.y))) );
-
421 int2 uv_max( std::min(sz.x-1,(int)round(fmaxf(fmaxf(uv.at(0).x,uv.at(1).x),uv.at(2).x)*float(sz.x))), std::min(sz.y-1,(int)round(fmaxf(fmaxf(uv.at(0).y,uv.at(1).y),uv.at(2).y)*float(sz.y))) );
-
422 int A = 0;
-
423 int At = 0;
-
424 vec2 xy;
-
425 for( int j=uv_min.y; j<uv_max.y; j++ ){
-
426 for( int i=uv_min.x; i<uv_max.x; i++ ){
-
427 xy.x = float(i+0.5)/float(sz.x-1);
-
428 xy.y = float(j+0.5)/float(sz.y-1);
+
404 }else{
+
405 solid_fraction = 1.f;
+
406 }
+
407
+
408}
+
409
+
410void Triangle::calculateSolidFraction( const std::map<std::string,Texture> &textures ){
+
411
+
412 if( textures.at(texturefile).hasTransparencyChannel() ){
+
413 const std::vector<std::vector<bool> >* alpha = textures.at(texturefile).getTransparencyData();
+
414 const int2 &sz = textures.at(texturefile).getImageResolution();
+
415 int2 uv_min( std::max(0,(int)round(fminf(fminf(uv.at(0).x,uv.at(1).x),uv.at(2).x)*float(sz.x))), std::max(0,(int)round(fmin(fminf(uv.at(0).y,uv.at(1).y),uv.at(2).y)*float(sz.y))) );
+
416 int2 uv_max( std::min(sz.x-1,(int)round(fmaxf(fmaxf(uv.at(0).x,uv.at(1).x),uv.at(2).x)*float(sz.x))), std::min(sz.y-1,(int)round(fmaxf(fmaxf(uv.at(0).y,uv.at(1).y),uv.at(2).y)*float(sz.y))) );
+
417 int A = 0;
+
418 int At = 0;
+
419 vec2 xy;
+
420 for( int j=uv_min.y; j<uv_max.y; j++ ){
+
421 for( int i=uv_min.x; i<uv_max.x; i++ ){
+
422 xy.x = float(i+0.5)/float(sz.x-1);
+
423 xy.y = float(j+0.5)/float(sz.y-1);
+
424
+
425 bool test_0 = edgeFunction( uv.at(0), uv.at(1), xy);
+
426 bool test_1 = edgeFunction( uv.at(1), uv.at(2), xy );
+
427 bool test_2 = edgeFunction( uv.at(2), uv.at(0), xy ) ;
+
428 uint test_sum = test_0 + test_1 + test_2;
429
-
430 bool test_0 = edgeFunction( uv.at(0), uv.at(1), xy);
-
431 bool test_1 = edgeFunction( uv.at(1), uv.at(2), xy );
-
432 bool test_2 = edgeFunction( uv.at(2), uv.at(0), xy ) ;
-
433 uint test_sum = test_0 + test_1 + test_2;
-
434
-
435 if(test_sum == 0 || test_sum == 3){
-
436 At += 1;
-
437 if( alpha->at(alpha->size()-j-1 ).at(i) ){
-
438 A += 1;
-
439 }
-
440 }
-
441 }
+
430 if(test_sum == 0 || test_sum == 3){
+
431 At += 1;
+
432 if( alpha->at(alpha->size()-j-1 ).at(i) ){
+
433 A += 1;
+
434 }
+
435 }
+
436 }
+
437 }
+
438 if( At==0 ){
+
439 solid_fraction = 0;
+
440 }else{
+
441 solid_fraction = float(A)/float(At);
442 }
-
443 if( At==0 ){
-
444 solid_fraction = 0;
-
445 }else{
-
446 solid_fraction = float(A)/float(At);
-
447 }
-
448 }else{
-
449 solid_fraction = 1.f;
-
450 }
-
451
-
452}
-
453
-
454void Voxel::calculateSolidFraction( const std::map<std::string,Texture> &textures ){
-
455
-
456}
-
457
-
458bool Triangle::edgeFunction(const helios::vec2 &a, const helios::vec2 &b, const helios::vec2 &c){
-
459 return ((c.y - a.y) * (b.x - a.x)-(c.x - a.x) * (b.y - a.y) >= 0);
-
460}
-
461
-
462void Triangle::setVertices(const helios::vec3& vertex0, const helios::vec3& vertex1, const helios::vec3& vertex2 ){
-
463 makeTransformationMatrix(vertex0, vertex1, vertex2);
-
464}
-
465
-
466void Primitive::applyTransform( float (&T)[16] ){
-
467 if( parent_object_ID!=0 ){
-
468 std::cerr << "WARNING (Primitive::applyTransform): Cannot transform individual primitives within a compound object. Use the setter function for objects." << std::endl;
-
469 return;
-
470 }
+
443 }else{
+
444 solid_fraction = 1.f;
+
445 }
+
446
+
447}
+
448
+
449void Voxel::calculateSolidFraction( const std::map<std::string,Texture> &textures ){
+
450
+
451}
+
452
+
453bool Triangle::edgeFunction(const helios::vec2 &a, const helios::vec2 &b, const helios::vec2 &c){
+
454 return ((c.y - a.y) * (b.x - a.x)-(c.x - a.x) * (b.y - a.y) >= 0);
+
455}
+
456
+
457void Triangle::setVertices(const helios::vec3& vertex0, const helios::vec3& vertex1, const helios::vec3& vertex2 ){
+
458 makeTransformationMatrix(vertex0, vertex1, vertex2);
+
459}
+
460
+
461void Primitive::applyTransform( float (&T)[16] ){
+
462 if( parent_object_ID!=0 ){
+
463 std::cerr << "WARNING (Primitive::applyTransform): Cannot transform individual primitives within a compound object. Use the setter function for objects." << std::endl;
+
464 return;
+
465 }
+
466
+
467 matmult(T,transform,transform);
+
468}
+
469
+
470void Primitive::scale( const vec3 &S ){
471
-
472 matmult(T,transform,transform);
-
473}
-
474
-
475void Primitive::scale( const vec3 &S ){
-
476
-
477 if( parent_object_ID!=0 ){
-
478 std::cerr << "WARNING (Primitive::scale): Cannot scale individual primitives within a compound object. Use the setter function for objects." << std::endl;
-
479 return;
-
480 }else if( S.x==0 || S.y==0 || S.z==0 ){
-
481 helios_runtime_error( "ERROR (Primitive::scale): Scaling factor cannot be zero." );
-
482 }else if( S.x==1 && S.y==1 && S.z==1 ){
-
483 return;
-
484 }
+
472 if( parent_object_ID!=0 ){
+
473 std::cerr << "WARNING (Primitive::scale): Cannot scale individual primitives within a compound object. Use the setter function for objects." << std::endl;
+
474 return;
+
475 }else if( S.x==0 || S.y==0 || S.z==0 ){
+
476 helios_runtime_error( "ERROR (Primitive::scale): Scaling factor cannot be zero." );
+
477 }else if( S.x==1 && S.y==1 && S.z==1 ){
+
478 return;
+
479 }
+
480
+
481 float T[16];
+
482 makeScaleMatrix(S,T);
+
483 matmult(T,transform,transform);
+
484}
485
-
486 float T[16];
-
487 makeScaleMatrix(S,T);
-
488 matmult(T,transform,transform);
-
489}
-
490
-
491void Primitive::scale( const vec3 &S, const vec3 &point ){
-
492
-
493 if( parent_object_ID!=0 ){
-
494 std::cerr << "WARNING (Primitive::scale): Cannot scale individual primitives within a compound object. Use the setter function for objects." << std::endl;
-
495 return;
-
496 }else if( S.x==0 || S.y==0 || S.z==0 ){
-
497 helios_runtime_error( "ERROR (Primitive::scale): Scaling factor cannot be zero." );
-
498 }else if( S.x==1 && S.y==1 && S.z==1 ){
-
499 return;
-
500 }
+
486void Primitive::scale( const vec3 &S, const vec3 &point ){
+
487
+
488 if( parent_object_ID!=0 ){
+
489 std::cerr << "WARNING (Primitive::scale): Cannot scale individual primitives within a compound object. Use the setter function for objects." << std::endl;
+
490 return;
+
491 }else if( S.x==0 || S.y==0 || S.z==0 ){
+
492 helios_runtime_error( "ERROR (Primitive::scale): Scaling factor cannot be zero." );
+
493 }else if( S.x==1 && S.y==1 && S.z==1 ){
+
494 return;
+
495 }
+
496
+
497 float T[16];
+
498 makeScaleMatrix(S, point,T);
+
499 matmult(T,transform,transform);
+
500}
501
-
502 float T[16];
-
503 makeScaleMatrix(S, point,T);
-
504 matmult(T,transform,transform);
-
505}
-
506
-
507void Primitive::translate( const helios::vec3& shift ){
+
502void Primitive::translate( const helios::vec3& shift ){
+
503
+
504 if( parent_object_ID!=0 ){
+
505 std::cerr << "WARNING (Primitive::translate): Cannot translate individual primitives within a compound object. Use the setter function for objects." << std::endl;
+
506 return;
+
507 }
508
-
509 if( parent_object_ID!=0 ){
-
510 std::cerr << "WARNING (Primitive::translate): Cannot translate individual primitives within a compound object. Use the setter function for objects." << std::endl;
-
511 return;
-
512 }
-
513
-
514 if( shift==nullorigin ){
-
515 return;
-
516 }
+
509 if( shift==nullorigin ){
+
510 return;
+
511 }
+
512
+
513 float T[16];
+
514 makeTranslationMatrix(shift,T);
+
515 matmult(T,transform,transform);
+
516}
517
-
518 float T[16];
-
519 makeTranslationMatrix(shift,T);
-
520 matmult(T,transform,transform);
-
521}
-
522
-
523void Patch::rotate(float rotation_radians, const char* rotation_axis_xyz_string ){
-
524
-
525 if( parent_object_ID!=0 ){
-
526 std::cerr << "WARNING (Patch::rotate): Cannot rotate individual primitives within a compound object. Use the setter function for objects." << std::endl;
-
527 return;
-
528 }
-
529 if(rotation_radians == 0 ){
-
530 return;
-
531 }
-
532
-
533 if(strcmp(rotation_axis_xyz_string, "z") == 0 ){
-
534 float Rz[16];
-
535 makeRotationMatrix(rotation_radians, "z", Rz);
-
536 matmult(Rz,transform,transform);
-
537 }else if(strcmp(rotation_axis_xyz_string, "y") == 0 ){
-
538 float Ry[16];
-
539 makeRotationMatrix(rotation_radians, "y", Ry);
-
540 matmult(Ry,transform,transform);
-
541 }else if(strcmp(rotation_axis_xyz_string, "x") == 0 ){
-
542 float Rx[16];
-
543 makeRotationMatrix(rotation_radians, "x", Rx);
-
544 matmult(Rx,transform,transform);
-
545 }else{
-
546 helios_runtime_error( "ERROR (Patch::rotate): Rotation axis should be one of x, y, or z." );
-
547 }
-
548
-
549}
-
550
-
551void Patch::rotate(float rotation_radians, const helios::vec3& rotation_axis_vector ){
-
552
-
553 if( parent_object_ID!=0 ){
-
554 std::cerr << "WARNING (Patch::rotate): Cannot rotate individual primitives within a compound object. Use the setter function for objects." << std::endl;
-
555 return;
-
556 }
-
557 if(rotation_radians == 0 ){
-
558 return;
-
559 }
+
518void Patch::rotate(float rotation_radians, const char* rotation_axis_xyz_string ){
+
519
+
520 if( parent_object_ID!=0 ){
+
521 std::cerr << "WARNING (Patch::rotate): Cannot rotate individual primitives within a compound object. Use the setter function for objects." << std::endl;
+
522 return;
+
523 }
+
524 if(rotation_radians == 0 ){
+
525 return;
+
526 }
+
527
+
528 if(strcmp(rotation_axis_xyz_string, "z") == 0 ){
+
529 float Rz[16];
+
530 makeRotationMatrix(rotation_radians, "z", Rz);
+
531 matmult(Rz,transform,transform);
+
532 }else if(strcmp(rotation_axis_xyz_string, "y") == 0 ){
+
533 float Ry[16];
+
534 makeRotationMatrix(rotation_radians, "y", Ry);
+
535 matmult(Ry,transform,transform);
+
536 }else if(strcmp(rotation_axis_xyz_string, "x") == 0 ){
+
537 float Rx[16];
+
538 makeRotationMatrix(rotation_radians, "x", Rx);
+
539 matmult(Rx,transform,transform);
+
540 }else{
+
541 helios_runtime_error( "ERROR (Patch::rotate): Rotation axis should be one of x, y, or z." );
+
542 }
+
543
+
544}
+
545
+
546void Patch::rotate(float rotation_radians, const helios::vec3& rotation_axis_vector ){
+
547
+
548 if( parent_object_ID!=0 ){
+
549 std::cerr << "WARNING (Patch::rotate): Cannot rotate individual primitives within a compound object. Use the setter function for objects." << std::endl;
+
550 return;
+
551 }
+
552 if(rotation_radians == 0 ){
+
553 return;
+
554 }
+
555
+
556 float R[16];
+
557 makeRotationMatrix(rotation_radians, rotation_axis_vector, R);
+
558 matmult(R,transform,transform);
+
559}
560
-
561 float R[16];
-
562 makeRotationMatrix(rotation_radians, rotation_axis_vector, R);
-
563 matmult(R,transform,transform);
-
564}
-
565
-
566void Patch::rotate(float rotation_radians, const helios::vec3& origin, const helios::vec3& rotation_axis_vector ){
-
567
-
568 if( parent_object_ID!=0 ){
-
569 std::cerr << "WARNING (Patch::rotate): Cannot rotate individual primitives within a compound object. Use the setter function for objects." << std::endl;
-
570 return;
-
571 }
-
572 if(rotation_radians == 0 ){
-
573 return;
-
574 }
+
561void Patch::rotate(float rotation_radians, const helios::vec3& origin, const helios::vec3& rotation_axis_vector ){
+
562
+
563 if( parent_object_ID!=0 ){
+
564 std::cerr << "WARNING (Patch::rotate): Cannot rotate individual primitives within a compound object. Use the setter function for objects." << std::endl;
+
565 return;
+
566 }
+
567 if(rotation_radians == 0 ){
+
568 return;
+
569 }
+
570
+
571 float R[16];
+
572 makeRotationMatrix(rotation_radians, origin, rotation_axis_vector, R);
+
573 matmult(R,transform,transform);
+
574}
575
-
576 float R[16];
-
577 makeRotationMatrix(rotation_radians, origin, rotation_axis_vector, R);
-
578 matmult(R,transform,transform);
-
579}
-
580
-
581void Triangle::rotate(float rotation_radians, const char* rotation_axis_xyz_string ){
-
582
-
583 if( parent_object_ID!=0 ){
-
584 std::cerr << "WARNING (Triangle::rotate): Cannot rotate individual primitives within a compound object. Use the setter function for objects." << std::endl;
-
585 return;
-
586 }
-
587 if(rotation_radians == 0 ){
-
588 return;
-
589 }
-
590
-
591 if(strcmp(rotation_axis_xyz_string, "z") == 0 ){
-
592 float Rz[16];
-
593 makeRotationMatrix(rotation_radians, "z", Rz);
-
594 matmult(Rz,transform,transform);
-
595 }else if(strcmp(rotation_axis_xyz_string, "y") == 0 ){
-
596 float Ry[16];
-
597 makeRotationMatrix(rotation_radians, "y", Ry);
-
598 matmult(Ry,transform,transform);
-
599 }else if(strcmp(rotation_axis_xyz_string, "x") == 0 ){
-
600 float Rx[16];
-
601 makeRotationMatrix(rotation_radians, "x", Rx);
-
602 matmult(Rx,transform,transform);
-
603 }else{
-
604 helios_runtime_error( "ERROR (Triangle::rotate): Rotation axis should be one of x, y, or z." );
-
605 }
-
606
-
607}
-
608
-
609void Triangle::rotate(float rotation_radians, const helios::vec3& rotation_axis_vector ){
-
610
-
611 if( parent_object_ID!=0 ){
-
612 std::cerr << "WARNING (Triangle::rotate): Cannot rotate individual primitives within a compound object. Use the setter function for objects." << std::endl;
-
613 return;
-
614 }
-
615 if(rotation_radians == 0 ){
-
616 return;
-
617 }
+
576void Triangle::rotate(float rotation_radians, const char* rotation_axis_xyz_string ){
+
577
+
578 if( parent_object_ID!=0 ){
+
579 std::cerr << "WARNING (Triangle::rotate): Cannot rotate individual primitives within a compound object. Use the setter function for objects." << std::endl;
+
580 return;
+
581 }
+
582 if(rotation_radians == 0 ){
+
583 return;
+
584 }
+
585
+
586 if(strcmp(rotation_axis_xyz_string, "z") == 0 ){
+
587 float Rz[16];
+
588 makeRotationMatrix(rotation_radians, "z", Rz);
+
589 matmult(Rz,transform,transform);
+
590 }else if(strcmp(rotation_axis_xyz_string, "y") == 0 ){
+
591 float Ry[16];
+
592 makeRotationMatrix(rotation_radians, "y", Ry);
+
593 matmult(Ry,transform,transform);
+
594 }else if(strcmp(rotation_axis_xyz_string, "x") == 0 ){
+
595 float Rx[16];
+
596 makeRotationMatrix(rotation_radians, "x", Rx);
+
597 matmult(Rx,transform,transform);
+
598 }else{
+
599 helios_runtime_error( "ERROR (Triangle::rotate): Rotation axis should be one of x, y, or z." );
+
600 }
+
601
+
602}
+
603
+
604void Triangle::rotate(float rotation_radians, const helios::vec3& rotation_axis_vector ){
+
605
+
606 if( parent_object_ID!=0 ){
+
607 std::cerr << "WARNING (Triangle::rotate): Cannot rotate individual primitives within a compound object. Use the setter function for objects." << std::endl;
+
608 return;
+
609 }
+
610 if(rotation_radians == 0 ){
+
611 return;
+
612 }
+
613
+
614 float R[16];
+
615 makeRotationMatrix(rotation_radians, rotation_axis_vector, R);
+
616 matmult(R,transform,transform);
+
617}
618
-
619 float R[16];
-
620 makeRotationMatrix(rotation_radians, rotation_axis_vector, R);
-
621 matmult(R,transform,transform);
-
622}
-
623
-
624void Triangle::rotate(float rotation_radians, const helios::vec3& origin, const helios::vec3& rotation_axis_vector ){
-
625
-
626 if( parent_object_ID!=0 ){
-
627 std::cerr << "WARNING (Triangle::rotate): Cannot rotate individual primitives within a compound object. Use the setter function for objects." << std::endl;
-
628 return;
-
629 }
-
630 if(rotation_radians == 0 ){
-
631 return;
-
632 }
+
619void Triangle::rotate(float rotation_radians, const helios::vec3& origin, const helios::vec3& rotation_axis_vector ){
+
620
+
621 if( parent_object_ID!=0 ){
+
622 std::cerr << "WARNING (Triangle::rotate): Cannot rotate individual primitives within a compound object. Use the setter function for objects." << std::endl;
+
623 return;
+
624 }
+
625 if(rotation_radians == 0 ){
+
626 return;
+
627 }
+
628
+
629 float R[16];
+
630 makeRotationMatrix(rotation_radians, origin, rotation_axis_vector, R);
+
631 matmult(R,transform,transform);
+
632}
633
-
634 float R[16];
-
635 makeRotationMatrix(rotation_radians, origin, rotation_axis_vector, R);
-
636 matmult(R,transform,transform);
-
637}
-
638
-
639void Voxel::rotate(float rotation_radians, const char* rotation_axis_xyz_string ){
-
640
-
641 if( parent_object_ID!=0 ){
-
642 std::cerr << "WARNING (Voxel::rotate): Cannot rotate individual primitives within a compound object. Use the setter function for objects." << std::endl;
-
643 return;
-
644 }
-
645 if(rotation_radians == 0 ){
-
646 return;
-
647 }
-
648
-
649 float Rz[16];
-
650 makeRotationMatrix(rotation_radians, "z", Rz);
-
651 matmult(Rz,transform,transform);
-
652
-
653}
-
654
-
655void Voxel::rotate(float rotation_radians, const helios::vec3& rotation_axis_vector ){
-
656 std::cerr << "WARNING (Voxel::rotate) - Voxels can only be rotated about the z-axis. Ignoring this call to rotate()." << std::endl;
-
657}
-
658
-
659void Voxel::rotate(float rotation_radians, const helios::vec3& origin, const helios::vec3& rotation_axis_vector ){
-
660 std::cerr << "WARNING (Voxel::rotate) - Voxels can only be rotated about the z-axis. Ignoring this call to rotate()." << std::endl;
-
661}
-
662
-
663void Triangle::makeTransformationMatrix( const helios::vec3& vert0, const helios::vec3& vert1, const helios::vec3& vert2 ){
-
664
-
665 //We need to construct the Affine transformation matrix that transforms some generic triangle to a triangle with vertices at vertex0, vertex1, vertex2.
-
666
-
667 //V1 is going to be our generic triangle. This is the triangle that we'll intersect in the OptiX ray intersection program. We just need to pass the transformation matrix to OptiX so that we'll end up with the right triangle.
-
668
-
669 //We'll assume our generic triangle has vertices
-
670 //v0 = (0,0,0)
-
671 //v1 = (0,1,0)
-
672 //v2 = (1,1,0)
-
673 //this needs to match up with the triangle in triangle_intersect() and triangle_bounds() (see primitiveIntersection.cu).
-
674 //Note that the matrix is padded with 1's to make it 4x4
-
675
-
676 float V1[16];
-
677
-
678 /* [0,0] */ V1[0] = 0.f;
-
679 /* [0,1] */ V1[1] = 0.f;
-
680 /* [0,2] */ V1[2] = 1.f;
-
681
-
682 /* [1,0] */ V1[4] = 0.f;
-
683 /* [1,1] */ V1[5] = 1.f;
-
684 /* [1,2] */ V1[6] = 1.f;
-
685
-
686 /* [2,0] */ V1[8] = 0.f;
-
687 /* [2,1] */ V1[9] = 0.f;
-
688 /* [2,2] */ V1[10] = 0.f;
-
689
-
690 /* [0,3] */ V1[3] = 1.f;
-
691 /* [1,3] */ V1[7] = 1.f;
-
692 /* [2,3] */ V1[11] = 1.f;
-
693 /* [3,0] */ V1[12] = 1.f;
-
694 /* [3,1] */ V1[13] = 1.f;
-
695 /* [3,2] */ V1[14] = 1.f;
-
696 /* [3,3] */ V1[15] = 1.f;
-
697
-
698 //V2 holds the vertex locations we want to transform to
-
699 //Note that the matrix is padded with 1's to make it 4x4
-
700
-
701 float V2[16];
-
702 /* [0,0] */ V2[0] = vert0.x;
-
703 /* [0,1] */ V2[1] = vert1.x;
-
704 /* [0,2] */ V2[2] = vert2.x;
-
705 /* [0,3] */ V2[3] = 1.f;
-
706 /* [1,0] */ V2[4] = vert0.y;
-
707 /* [1,1] */ V2[5] = vert1.y;
-
708 /* [1,2] */ V2[6] = vert2.y;
-
709 /* [1,3] */ V2[7] = 1.f;
-
710 /* [2,0] */ V2[8] = vert0.z;
-
711 /* [2,1] */ V2[9] = vert1.z;
-
712 /* [2,2] */ V2[10] = vert2.z;
-
713 /* [2,3] */ V2[11] = 1.f;
-
714 /* [3,0] */ V2[12] = 1.f;
-
715 /* [3,1] */ V2[13] = 1.f;
-
716 /* [3,2] */ V2[14] = 1.f;
-
717 /* [3,3] */ V2[15] = 1.f;
-
718
-
719 //Now we just need to solve the linear system for our transform matrix T
-
720 // [T][V1] = [V2] -->
-
721 // [T] = [V2]([V1]^-1)
-
722
-
723 double inv[16], det, invV1[16];
-
724
-
725 inv[0] = V1[5] * V1[10] * V1[15] -
-
726 V1[5] * V1[11] * V1[14] -
-
727 V1[9] * V1[6] * V1[15] +
-
728 V1[9] * V1[7] * V1[14] +
-
729 V1[13] * V1[6] * V1[11] -
-
730 V1[13] * V1[7] * V1[10];
-
731
-
732 inv[4] = -V1[4] * V1[10] * V1[15] +
-
733 V1[4] * V1[11] * V1[14] +
-
734 V1[8] * V1[6] * V1[15] -
-
735 V1[8] * V1[7] * V1[14] -
-
736 V1[12] * V1[6] * V1[11] +
-
737 V1[12] * V1[7] * V1[10];
-
738
-
739 inv[8] = V1[4] * V1[9] * V1[15] -
-
740 V1[4] * V1[11] * V1[13] -
-
741 V1[8] * V1[5] * V1[15] +
-
742 V1[8] * V1[7] * V1[13] +
-
743 V1[12] * V1[5] * V1[11] -
-
744 V1[12] * V1[7] * V1[9];
-
745
-
746 inv[12] = -V1[4] * V1[9] * V1[14] +
-
747 V1[4] * V1[10] * V1[13] +
-
748 V1[8] * V1[5] * V1[14] -
-
749 V1[8] * V1[6] * V1[13] -
-
750 V1[12] * V1[5] * V1[10] +
-
751 V1[12] * V1[6] * V1[9];
-
752
-
753 inv[1] = -V1[1] * V1[10] * V1[15] +
-
754 V1[1] * V1[11] * V1[14] +
-
755 V1[9] * V1[2] * V1[15] -
-
756 V1[9] * V1[3] * V1[14] -
-
757 V1[13] * V1[2] * V1[11] +
-
758 V1[13] * V1[3] * V1[10];
-
759
-
760 inv[5] = V1[0] * V1[10] * V1[15] -
-
761 V1[0] * V1[11] * V1[14] -
-
762 V1[8] * V1[2] * V1[15] +
-
763 V1[8] * V1[3] * V1[14] +
-
764 V1[12] * V1[2] * V1[11] -
-
765 V1[12] * V1[3] * V1[10];
-
766
-
767 inv[9] = -V1[0] * V1[9] * V1[15] +
-
768 V1[0] * V1[11] * V1[13] +
-
769 V1[8] * V1[1] * V1[15] -
-
770 V1[8] * V1[3] * V1[13] -
-
771 V1[12] * V1[1] * V1[11] +
-
772 V1[12] * V1[3] * V1[9];
-
773
-
774 inv[13] = V1[0] * V1[9] * V1[14] -
-
775 V1[0] * V1[10] * V1[13] -
-
776 V1[8] * V1[1] * V1[14] +
-
777 V1[8] * V1[2] * V1[13] +
-
778 V1[12] * V1[1] * V1[10] -
-
779 V1[12] * V1[2] * V1[9];
-
780
-
781 inv[2] = V1[1] * V1[6] * V1[15] -
-
782 V1[1] * V1[7] * V1[14] -
-
783 V1[5] * V1[2] * V1[15] +
-
784 V1[5] * V1[3] * V1[14] +
-
785 V1[13] * V1[2] * V1[7] -
-
786 V1[13] * V1[3] * V1[6];
-
787
-
788 inv[6] = -V1[0] * V1[6] * V1[15] +
-
789 V1[0] * V1[7] * V1[14] +
-
790 V1[4] * V1[2] * V1[15] -
-
791 V1[4] * V1[3] * V1[14] -
-
792 V1[12] * V1[2] * V1[7] +
-
793 V1[12] * V1[3] * V1[6];
-
794
-
795 inv[10] = V1[0] * V1[5] * V1[15] -
-
796 V1[0] * V1[7] * V1[13] -
-
797 V1[4] * V1[1] * V1[15] +
-
798 V1[4] * V1[3] * V1[13] +
-
799 V1[12] * V1[1] * V1[7] -
-
800 V1[12] * V1[3] * V1[5];
-
801
-
802 inv[14] = -V1[0] * V1[5] * V1[14] +
-
803 V1[0] * V1[6] * V1[13] +
-
804 V1[4] * V1[1] * V1[14] -
-
805 V1[4] * V1[2] * V1[13] -
-
806 V1[12] * V1[1] * V1[6] +
-
807 V1[12] * V1[2] * V1[5];
-
808
-
809 inv[3] = -V1[1] * V1[6] * V1[11] +
-
810 V1[1] * V1[7] * V1[10] +
-
811 V1[5] * V1[2] * V1[11] -
-
812 V1[5] * V1[3] * V1[10] -
-
813 V1[9] * V1[2] * V1[7] +
-
814 V1[9] * V1[3] * V1[6];
-
815
-
816 inv[7] = V1[0] * V1[6] * V1[11] -
-
817 V1[0] * V1[7] * V1[10] -
-
818 V1[4] * V1[2] * V1[11] +
-
819 V1[4] * V1[3] * V1[10] +
-
820 V1[8] * V1[2] * V1[7] -
-
821 V1[8] * V1[3] * V1[6];
-
822
-
823 inv[11] = -V1[0] * V1[5] * V1[11] +
-
824 V1[0] * V1[7] * V1[9] +
-
825 V1[4] * V1[1] * V1[11] -
-
826 V1[4] * V1[3] * V1[9] -
-
827 V1[8] * V1[1] * V1[7] +
-
828 V1[8] * V1[3] * V1[5];
-
829
-
830 inv[15] = V1[0] * V1[5] * V1[10] -
-
831 V1[0] * V1[6] * V1[9] -
-
832 V1[4] * V1[1] * V1[10] +
-
833 V1[4] * V1[2] * V1[9] +
-
834 V1[8] * V1[1] * V1[6] -
-
835 V1[8] * V1[2] * V1[5];
+
634void Voxel::rotate(float rotation_radians, const char* rotation_axis_xyz_string ){
+
635
+
636 if( parent_object_ID!=0 ){
+
637 std::cerr << "WARNING (Voxel::rotate): Cannot rotate individual primitives within a compound object. Use the setter function for objects." << std::endl;
+
638 return;
+
639 }
+
640 if(rotation_radians == 0 ){
+
641 return;
+
642 }
+
643
+
644 float Rz[16];
+
645 makeRotationMatrix(rotation_radians, "z", Rz);
+
646 matmult(Rz,transform,transform);
+
647
+
648}
+
649
+
650void Voxel::rotate(float rotation_radians, const helios::vec3& rotation_axis_vector ){
+
651 std::cerr << "WARNING (Voxel::rotate) - Voxels can only be rotated about the z-axis. Ignoring this call to rotate()." << std::endl;
+
652}
+
653
+
654void Voxel::rotate(float rotation_radians, const helios::vec3& origin, const helios::vec3& rotation_axis_vector ){
+
655 std::cerr << "WARNING (Voxel::rotate) - Voxels can only be rotated about the z-axis. Ignoring this call to rotate()." << std::endl;
+
656}
+
657
+
658void Triangle::makeTransformationMatrix( const helios::vec3& vert0, const helios::vec3& vert1, const helios::vec3& vert2 ){
+
659
+
660 //We need to construct the Affine transformation matrix that transforms some generic triangle to a triangle with vertices at vertex0, vertex1, vertex2.
+
661
+
662 //V1 is going to be our generic triangle. This is the triangle that we'll intersect in the OptiX ray intersection program. We just need to pass the transformation matrix to OptiX so that we'll end up with the right triangle.
+
663
+
664 //We'll assume our generic triangle has vertices
+
665 //v0 = (0,0,0)
+
666 //v1 = (0,1,0)
+
667 //v2 = (1,1,0)
+
668 //this needs to match up with the triangle in triangle_intersect() and triangle_bounds() (see primitiveIntersection.cu).
+
669 //Note that the matrix is padded with 1's to make it 4x4
+
670
+
671 float V1[16];
+
672
+
673 /* [0,0] */ V1[0] = 0.f;
+
674 /* [0,1] */ V1[1] = 0.f;
+
675 /* [0,2] */ V1[2] = 1.f;
+
676
+
677 /* [1,0] */ V1[4] = 0.f;
+
678 /* [1,1] */ V1[5] = 1.f;
+
679 /* [1,2] */ V1[6] = 1.f;
+
680
+
681 /* [2,0] */ V1[8] = 0.f;
+
682 /* [2,1] */ V1[9] = 0.f;
+
683 /* [2,2] */ V1[10] = 0.f;
+
684
+
685 /* [0,3] */ V1[3] = 1.f;
+
686 /* [1,3] */ V1[7] = 1.f;
+
687 /* [2,3] */ V1[11] = 1.f;
+
688 /* [3,0] */ V1[12] = 1.f;
+
689 /* [3,1] */ V1[13] = 1.f;
+
690 /* [3,2] */ V1[14] = 1.f;
+
691 /* [3,3] */ V1[15] = 1.f;
+
692
+
693 //V2 holds the vertex locations we want to transform to
+
694 //Note that the matrix is padded with 1's to make it 4x4
+
695
+
696 float V2[16];
+
697 /* [0,0] */ V2[0] = vert0.x;
+
698 /* [0,1] */ V2[1] = vert1.x;
+
699 /* [0,2] */ V2[2] = vert2.x;
+
700 /* [0,3] */ V2[3] = 1.f;
+
701 /* [1,0] */ V2[4] = vert0.y;
+
702 /* [1,1] */ V2[5] = vert1.y;
+
703 /* [1,2] */ V2[6] = vert2.y;
+
704 /* [1,3] */ V2[7] = 1.f;
+
705 /* [2,0] */ V2[8] = vert0.z;
+
706 /* [2,1] */ V2[9] = vert1.z;
+
707 /* [2,2] */ V2[10] = vert2.z;
+
708 /* [2,3] */ V2[11] = 1.f;
+
709 /* [3,0] */ V2[12] = 1.f;
+
710 /* [3,1] */ V2[13] = 1.f;
+
711 /* [3,2] */ V2[14] = 1.f;
+
712 /* [3,3] */ V2[15] = 1.f;
+
713
+
714 //Now we just need to solve the linear system for our transform matrix T
+
715 // [T][V1] = [V2] -->
+
716 // [T] = [V2]([V1]^-1)
+
717
+
718 double inv[16], det, invV1[16];
+
719
+
720 inv[0] = V1[5] * V1[10] * V1[15] -
+
721 V1[5] * V1[11] * V1[14] -
+
722 V1[9] * V1[6] * V1[15] +
+
723 V1[9] * V1[7] * V1[14] +
+
724 V1[13] * V1[6] * V1[11] -
+
725 V1[13] * V1[7] * V1[10];
+
726
+
727 inv[4] = -V1[4] * V1[10] * V1[15] +
+
728 V1[4] * V1[11] * V1[14] +
+
729 V1[8] * V1[6] * V1[15] -
+
730 V1[8] * V1[7] * V1[14] -
+
731 V1[12] * V1[6] * V1[11] +
+
732 V1[12] * V1[7] * V1[10];
+
733
+
734 inv[8] = V1[4] * V1[9] * V1[15] -
+
735 V1[4] * V1[11] * V1[13] -
+
736 V1[8] * V1[5] * V1[15] +
+
737 V1[8] * V1[7] * V1[13] +
+
738 V1[12] * V1[5] * V1[11] -
+
739 V1[12] * V1[7] * V1[9];
+
740
+
741 inv[12] = -V1[4] * V1[9] * V1[14] +
+
742 V1[4] * V1[10] * V1[13] +
+
743 V1[8] * V1[5] * V1[14] -
+
744 V1[8] * V1[6] * V1[13] -
+
745 V1[12] * V1[5] * V1[10] +
+
746 V1[12] * V1[6] * V1[9];
+
747
+
748 inv[1] = -V1[1] * V1[10] * V1[15] +
+
749 V1[1] * V1[11] * V1[14] +
+
750 V1[9] * V1[2] * V1[15] -
+
751 V1[9] * V1[3] * V1[14] -
+
752 V1[13] * V1[2] * V1[11] +
+
753 V1[13] * V1[3] * V1[10];
+
754
+
755 inv[5] = V1[0] * V1[10] * V1[15] -
+
756 V1[0] * V1[11] * V1[14] -
+
757 V1[8] * V1[2] * V1[15] +
+
758 V1[8] * V1[3] * V1[14] +
+
759 V1[12] * V1[2] * V1[11] -
+
760 V1[12] * V1[3] * V1[10];
+
761
+
762 inv[9] = -V1[0] * V1[9] * V1[15] +
+
763 V1[0] * V1[11] * V1[13] +
+
764 V1[8] * V1[1] * V1[15] -
+
765 V1[8] * V1[3] * V1[13] -
+
766 V1[12] * V1[1] * V1[11] +
+
767 V1[12] * V1[3] * V1[9];
+
768
+
769 inv[13] = V1[0] * V1[9] * V1[14] -
+
770 V1[0] * V1[10] * V1[13] -
+
771 V1[8] * V1[1] * V1[14] +
+
772 V1[8] * V1[2] * V1[13] +
+
773 V1[12] * V1[1] * V1[10] -
+
774 V1[12] * V1[2] * V1[9];
+
775
+
776 inv[2] = V1[1] * V1[6] * V1[15] -
+
777 V1[1] * V1[7] * V1[14] -
+
778 V1[5] * V1[2] * V1[15] +
+
779 V1[5] * V1[3] * V1[14] +
+
780 V1[13] * V1[2] * V1[7] -
+
781 V1[13] * V1[3] * V1[6];
+
782
+
783 inv[6] = -V1[0] * V1[6] * V1[15] +
+
784 V1[0] * V1[7] * V1[14] +
+
785 V1[4] * V1[2] * V1[15] -
+
786 V1[4] * V1[3] * V1[14] -
+
787 V1[12] * V1[2] * V1[7] +
+
788 V1[12] * V1[3] * V1[6];
+
789
+
790 inv[10] = V1[0] * V1[5] * V1[15] -
+
791 V1[0] * V1[7] * V1[13] -
+
792 V1[4] * V1[1] * V1[15] +
+
793 V1[4] * V1[3] * V1[13] +
+
794 V1[12] * V1[1] * V1[7] -
+
795 V1[12] * V1[3] * V1[5];
+
796
+
797 inv[14] = -V1[0] * V1[5] * V1[14] +
+
798 V1[0] * V1[6] * V1[13] +
+
799 V1[4] * V1[1] * V1[14] -
+
800 V1[4] * V1[2] * V1[13] -
+
801 V1[12] * V1[1] * V1[6] +
+
802 V1[12] * V1[2] * V1[5];
+
803
+
804 inv[3] = -V1[1] * V1[6] * V1[11] +
+
805 V1[1] * V1[7] * V1[10] +
+
806 V1[5] * V1[2] * V1[11] -
+
807 V1[5] * V1[3] * V1[10] -
+
808 V1[9] * V1[2] * V1[7] +
+
809 V1[9] * V1[3] * V1[6];
+
810
+
811 inv[7] = V1[0] * V1[6] * V1[11] -
+
812 V1[0] * V1[7] * V1[10] -
+
813 V1[4] * V1[2] * V1[11] +
+
814 V1[4] * V1[3] * V1[10] +
+
815 V1[8] * V1[2] * V1[7] -
+
816 V1[8] * V1[3] * V1[6];
+
817
+
818 inv[11] = -V1[0] * V1[5] * V1[11] +
+
819 V1[0] * V1[7] * V1[9] +
+
820 V1[4] * V1[1] * V1[11] -
+
821 V1[4] * V1[3] * V1[9] -
+
822 V1[8] * V1[1] * V1[7] +
+
823 V1[8] * V1[3] * V1[5];
+
824
+
825 inv[15] = V1[0] * V1[5] * V1[10] -
+
826 V1[0] * V1[6] * V1[9] -
+
827 V1[4] * V1[1] * V1[10] +
+
828 V1[4] * V1[2] * V1[9] +
+
829 V1[8] * V1[1] * V1[6] -
+
830 V1[8] * V1[2] * V1[5];
+
831
+
832 det = V1[0] * inv[0] + V1[1] * inv[4] + V1[2] * inv[8] + V1[3] * inv[12];
+
833
+
834 //if (det == 0)
+
835 //return false;
836
-
837 det = V1[0] * inv[0] + V1[1] * inv[4] + V1[2] * inv[8] + V1[3] * inv[12];
+
837 det = 1.0 / det;
838
-
839 //if (det == 0)
-
840 //return false;
+
839 for (int i = 0; i < 16; i++)
+
840 invV1[i] = inv[i] * det;
841
-
842 det = 1.0 / det;
-
843
-
844 for (int i = 0; i < 16; i++)
-
845 invV1[i] = inv[i] * det;
-
846
-
847 for( int i=0;i<4;i++){
-
848 for(int j=0;j<4;j++){
-
849 transform[ j+i*4 ] = 0.f;
-
850 }
-
851 }
-
852
-
853 // Multiply to get transformation matrix [T] = [V2]([V1]^-1)
-
854 for( int i=0;i<4;i++){
-
855 for(int j=0;j<4;j++){
-
856 for(int k=0;k<4;k++){
-
857 transform[ j+i*4 ] += V2[k+i*4]*float(invV1[j+k*4]);
-
858 }
-
859 }
-
860 }
-
861
-
862}
-
863
-
864Patch::Patch( const RGBAcolor& a_color, uint a_parent_objID, uint a_UUID ){
-
865
-
866 makeIdentityMatrix( transform );
-
867
-
868 color = a_color;
-
869 assert( color.r>=0 && color.r<=1 && color.g>=0 && color.g<=1 && color.b>=0 && color.b<=1 );
-
870 parent_object_ID = a_parent_objID;
-
871 UUID = a_UUID;
-
872 prim_type = PRIMITIVE_TYPE_PATCH;
-
873 solid_fraction = 1.f;
-
874 texturefile = "";
-
875 texturecoloroverridden = false;
-
876
-
877}
-
878
-
879Patch::Patch( const char* a_texturefile, float a_solid_fraction, uint a_parent_objID, uint a_UUID ){
-
880
-
881 makeIdentityMatrix( transform );
-
882
-
883 parent_object_ID = a_parent_objID;
-
884 UUID = a_UUID;
-
885 prim_type = PRIMITIVE_TYPE_PATCH;
-
886 texturefile = a_texturefile;
-
887 solid_fraction = a_solid_fraction;
-
888 texturecoloroverridden = false;
-
889
-
890}
-
891
-
892Patch::Patch( const char* a_texturefile, const std::vector<helios::vec2>& a_uv, const std::map<std::string,Texture> &textures, uint a_parent_objID, uint a_UUID ){
-
893
-
894 makeIdentityMatrix( transform );
-
895
-
896 parent_object_ID = a_parent_objID;
-
897 UUID = a_UUID;
-
898 prim_type = PRIMITIVE_TYPE_PATCH;
-
899
-
900 texturefile = a_texturefile;
-
901 uv = a_uv;
-
902 texturecoloroverridden = false;
-
903
-
904 if( uv.size()==4 && uv.at(0).x==0 && uv.at(0).y==0 && uv.at(1).x==1 && uv.at(1).y==0 && uv.at(2).x==1 && uv.at(2).y==1 && uv.at(3).x== 0 && uv.at(3).y==1 ){
-
905 solid_fraction = textures.at(texturefile).getSolidFraction();
-
906 }else {
-
907 this->calculateSolidFraction(textures);
-
908 }
-
909
-
910}
-
911
-
912helios::vec2 Patch::getSize() const{
-
913 const std::vector<vec3> &vertices = getVertices();
-
914 float l = (vertices.at(1)-vertices.at(0)).magnitude();
-
915 float w = (vertices.at(3)-vertices.at(0)).magnitude();
-
916 return make_vec2(l,w);
-
917}
-
918
-
919helios::vec3 Patch::getCenter() const{
-
920 return make_vec3(transform[3],transform[7],transform[11]);
-
921}
-
922
-
923Triangle::Triangle( const helios::vec3& a_vertex0, const helios::vec3& a_vertex1, const helios::vec3& a_vertex2, const helios::RGBAcolor& a_color, uint a_parent_objID, uint a_UUID ){
-
924
-
925 makeTransformationMatrix(a_vertex0,a_vertex1,a_vertex2);
-
926 color = a_color;
-
927 parent_object_ID = a_parent_objID;
-
928 UUID = a_UUID;
-
929 prim_type = PRIMITIVE_TYPE_TRIANGLE;
-
930 texturefile = "";
-
931 solid_fraction = 1.f;
-
932 texturecoloroverridden = false;
-
933
-
934}
-
935
-
936Triangle::Triangle( const helios::vec3& a_vertex0, const helios::vec3& a_vertex1, const helios::vec3& a_vertex2, const char* a_texturefile, const std::vector<helios::vec2>& a_uv, float solid_fraction, uint a_parent_objID, uint a_UUID ){
-
937
-
938 makeTransformationMatrix(a_vertex0,a_vertex1,a_vertex2);
-
939 color = make_RGBAcolor(RGB::red,1);
-
940 parent_object_ID = a_parent_objID;
-
941 UUID = a_UUID;
-
942 prim_type = PRIMITIVE_TYPE_TRIANGLE;
+
842 for( int i=0;i<4;i++){
+
843 for(int j=0;j<4;j++){
+
844 transform[ j+i*4 ] = 0.f;
+
845 }
+
846 }
+
847
+
848 // Multiply to get transformation matrix [T] = [V2]([V1]^-1)
+
849 for( int i=0;i<4;i++){
+
850 for(int j=0;j<4;j++){
+
851 for(int k=0;k<4;k++){
+
852 transform[ j+i*4 ] += V2[k+i*4]*float(invV1[j+k*4]);
+
853 }
+
854 }
+
855 }
+
856
+
857}
+
858
+
859Patch::Patch( const RGBAcolor& a_color, uint a_parent_objID, uint a_UUID ){
+
860
+
861 makeIdentityMatrix( transform );
+
862
+
863 color = a_color;
+
864 assert( color.r>=0 && color.r<=1 && color.g>=0 && color.g<=1 && color.b>=0 && color.b<=1 );
+
865 parent_object_ID = a_parent_objID;
+
866 UUID = a_UUID;
+
867 prim_type = PRIMITIVE_TYPE_PATCH;
+
868 solid_fraction = 1.f;
+
869 texturefile = "";
+
870 texturecoloroverridden = false;
+
871
+
872}
+
873
+
874Patch::Patch( const char* a_texturefile, float a_solid_fraction, uint a_parent_objID, uint a_UUID ){
+
875
+
876 makeIdentityMatrix( transform );
+
877
+
878 parent_object_ID = a_parent_objID;
+
879 UUID = a_UUID;
+
880 prim_type = PRIMITIVE_TYPE_PATCH;
+
881 texturefile = a_texturefile;
+
882 solid_fraction = a_solid_fraction;
+
883 texturecoloroverridden = false;
+
884
+
885}
+
886
+
887Patch::Patch( const char* a_texturefile, const std::vector<helios::vec2>& a_uv, const std::map<std::string,Texture> &textures, uint a_parent_objID, uint a_UUID ){
+
888
+
889 makeIdentityMatrix( transform );
+
890
+
891 parent_object_ID = a_parent_objID;
+
892 UUID = a_UUID;
+
893 prim_type = PRIMITIVE_TYPE_PATCH;
+
894
+
895 texturefile = a_texturefile;
+
896 uv = a_uv;
+
897 texturecoloroverridden = false;
+
898
+
899 if( uv.size()==4 && uv.at(0).x==0 && uv.at(0).y==0 && uv.at(1).x==1 && uv.at(1).y==0 && uv.at(2).x==1 && uv.at(2).y==1 && uv.at(3).x== 0 && uv.at(3).y==1 ){
+
900 solid_fraction = textures.at(texturefile).getSolidFraction();
+
901 }else {
+
902 this->calculateSolidFraction(textures);
+
903 }
+
904
+
905}
+
906
+
907helios::vec2 Patch::getSize() const{
+
908 const std::vector<vec3> &vertices = getVertices();
+
909 float l = (vertices.at(1)-vertices.at(0)).magnitude();
+
910 float w = (vertices.at(3)-vertices.at(0)).magnitude();
+
911 return make_vec2(l,w);
+
912}
+
913
+
914helios::vec3 Patch::getCenter() const{
+
915 return make_vec3(transform[3],transform[7],transform[11]);
+
916}
+
917
+
918Triangle::Triangle( const helios::vec3& a_vertex0, const helios::vec3& a_vertex1, const helios::vec3& a_vertex2, const helios::RGBAcolor& a_color, uint a_parent_objID, uint a_UUID ){
+
919
+
920 makeTransformationMatrix(a_vertex0,a_vertex1,a_vertex2);
+
921 color = a_color;
+
922 parent_object_ID = a_parent_objID;
+
923 UUID = a_UUID;
+
924 prim_type = PRIMITIVE_TYPE_TRIANGLE;
+
925 texturefile = "";
+
926 solid_fraction = 1.f;
+
927 texturecoloroverridden = false;
+
928
+
929}
+
930
+
931Triangle::Triangle( const helios::vec3& a_vertex0, const helios::vec3& a_vertex1, const helios::vec3& a_vertex2, const char* a_texturefile, const std::vector<helios::vec2>& a_uv, float solid_fraction, uint a_parent_objID, uint a_UUID ){
+
932
+
933 makeTransformationMatrix(a_vertex0,a_vertex1,a_vertex2);
+
934 color = make_RGBAcolor(RGB::red,1);
+
935 parent_object_ID = a_parent_objID;
+
936 UUID = a_UUID;
+
937 prim_type = PRIMITIVE_TYPE_TRIANGLE;
+
938
+
939 texturefile = a_texturefile;
+
940 uv = a_uv;
+
941 solid_fraction = solid_fraction;
+
942 texturecoloroverridden = false;
943
-
944 texturefile = a_texturefile;
-
945 uv = a_uv;
-
946 solid_fraction = solid_fraction;
-
947 texturecoloroverridden = false;
-
948
-
949}
-
950
-
951Triangle::Triangle( const helios::vec3& a_vertex0, const helios::vec3& a_vertex1, const helios::vec3& a_vertex2, const char* a_texturefile, const std::vector<helios::vec2>& a_uv, const std::map<std::string,Texture> &textures, uint a_parent_objID, uint a_UUID ){
-
952
-
953 makeTransformationMatrix(a_vertex0,a_vertex1,a_vertex2);
-
954 color = make_RGBAcolor(RGB::red,1);
-
955 parent_object_ID = a_parent_objID;
-
956 UUID = a_UUID;
-
957 prim_type = PRIMITIVE_TYPE_TRIANGLE;
+
944}
+
945
+
946Triangle::Triangle( const helios::vec3& a_vertex0, const helios::vec3& a_vertex1, const helios::vec3& a_vertex2, const char* a_texturefile, const std::vector<helios::vec2>& a_uv, const std::map<std::string,Texture> &textures, uint a_parent_objID, uint a_UUID ){
+
947
+
948 makeTransformationMatrix(a_vertex0,a_vertex1,a_vertex2);
+
949 color = make_RGBAcolor(RGB::red,1);
+
950 parent_object_ID = a_parent_objID;
+
951 UUID = a_UUID;
+
952 prim_type = PRIMITIVE_TYPE_TRIANGLE;
+
953
+
954 texturefile = a_texturefile;
+
955 uv = a_uv;
+
956 solid_fraction = 1.f;
+
957 texturecoloroverridden = false;
958
-
959 texturefile = a_texturefile;
-
960 uv = a_uv;
-
961 solid_fraction = 1.f;
-
962 texturecoloroverridden = false;
-
963
-
964 this->calculateSolidFraction(textures);
-
965
-
966}
-
967
-
968vec3 Triangle::getVertex( int vertex_index ){
-
969
-
970 if(vertex_index < 0 || vertex_index > 2 ){
-
971 helios_runtime_error("ERROR (Context::getVertex): vertex index must be 1, 2, or 3.");
-
972 }
+
959 this->calculateSolidFraction(textures);
+
960
+
961}
+
962
+
963vec3 Triangle::getVertex( int vertex_index ){
+
964
+
965 if(vertex_index < 0 || vertex_index > 2 ){
+
966 helios_runtime_error("ERROR (Context::getVertex): vertex index must be 1, 2, or 3.");
+
967 }
+
968
+
969 vec3 Y[3];
+
970 Y[0] = make_vec3( 0.f, 0.f, 0.f);
+
971 Y[1] = make_vec3( 0.f, 1.f, 0.f);
+
972 Y[2] = make_vec3( 1.f, 1.f, 0.f);
973
-
974 vec3 Y[3];
-
975 Y[0] = make_vec3( 0.f, 0.f, 0.f);
-
976 Y[1] = make_vec3( 0.f, 1.f, 0.f);
-
977 Y[2] = make_vec3( 1.f, 1.f, 0.f);
-
978
-
979 vec3 vertex;
-
980
-
981 vertex.x = transform[0] * Y[vertex_index].x + transform[1] * Y[vertex_index].y + transform[2] * Y[vertex_index].z + transform[3];
-
982 vertex.y = transform[4] * Y[vertex_index].x + transform[5] * Y[vertex_index].y + transform[6] * Y[vertex_index].z + transform[7];
-
983 vertex.z = transform[8] * Y[vertex_index].x + transform[9] * Y[vertex_index].y + transform[10] * Y[vertex_index].z + transform[11];
-
984
-
985 return vertex;
-
986
-
987}
-
988
-
989vec3 Triangle::getCenter() const{
-
990
-
991// Y[0] = make_vec3( 0.f, 0.f, 0.f);
-
992// Y[1] = make_vec3( 0.f, 1.f, 0.f);
-
993// Y[2] = make_vec3( 1.f/3.f, 1.f, 0.f);
-
994
-
995 vec3 center0 = make_vec3(1.f/3.f,2.f/3.f,0.f);
-
996 vec3 center;
-
997
-
998 center.x = transform[0] * center0.x + transform[1] * center0.y + transform[2] * center0.z + transform[3];
-
999 center.y = transform[4] * center0.x + transform[5] * center0.y + transform[6] * center0.z + transform[7];
-
1000 center.z = transform[8] * center0.x + transform[9] * center0.y + transform[10] * center0.z + transform[11];
-
1001
-
1002 return center;
-
1003
-
1004}
-
1005
-
1006Voxel::Voxel( const RGBAcolor& a_color, uint a_parent_objID, uint a_UUID ){
-
1007
-
1008 makeIdentityMatrix(transform);
-
1009
-
1010 color = a_color;
-
1011 assert( color.r>=0 && color.r<=1 && color.g>=0 && color.g<=1 && color.b>=0 && color.b<=1 );
-
1012 solid_fraction = 1.f;
-
1013 parent_object_ID = a_parent_objID;
-
1014 UUID = a_UUID;
-
1015 prim_type = PRIMITIVE_TYPE_VOXEL;
-
1016 texturefile = "";
-
1017 texturecoloroverridden = false;
-
1018
-
1019}
-
1020
-
1021float Voxel::getVolume(){
+
974 vec3 vertex;
+
975
+
976 vertex.x = transform[0] * Y[vertex_index].x + transform[1] * Y[vertex_index].y + transform[2] * Y[vertex_index].z + transform[3];
+
977 vertex.y = transform[4] * Y[vertex_index].x + transform[5] * Y[vertex_index].y + transform[6] * Y[vertex_index].z + transform[7];
+
978 vertex.z = transform[8] * Y[vertex_index].x + transform[9] * Y[vertex_index].y + transform[10] * Y[vertex_index].z + transform[11];
+
979
+
980 return vertex;
+
981
+
982}
+
983
+
984vec3 Triangle::getCenter() const{
+
985
+
986// Y[0] = make_vec3( 0.f, 0.f, 0.f);
+
987// Y[1] = make_vec3( 0.f, 1.f, 0.f);
+
988// Y[2] = make_vec3( 1.f/3.f, 1.f, 0.f);
+
989
+
990 vec3 center0 = make_vec3(1.f/3.f,2.f/3.f,0.f);
+
991 vec3 center;
+
992
+
993 center.x = transform[0] * center0.x + transform[1] * center0.y + transform[2] * center0.z + transform[3];
+
994 center.y = transform[4] * center0.x + transform[5] * center0.y + transform[6] * center0.z + transform[7];
+
995 center.z = transform[8] * center0.x + transform[9] * center0.y + transform[10] * center0.z + transform[11];
+
996
+
997 return center;
+
998
+
999}
+
1000
+
1001Voxel::Voxel( const RGBAcolor& a_color, uint a_parent_objID, uint a_UUID ){
+
1002
+
1003 makeIdentityMatrix(transform);
+
1004
+
1005 color = a_color;
+
1006 assert( color.r>=0 && color.r<=1 && color.g>=0 && color.g<=1 && color.b>=0 && color.b<=1 );
+
1007 solid_fraction = 1.f;
+
1008 parent_object_ID = a_parent_objID;
+
1009 UUID = a_UUID;
+
1010 prim_type = PRIMITIVE_TYPE_VOXEL;
+
1011 texturefile = "";
+
1012 texturecoloroverridden = false;
+
1013
+
1014}
+
1015
+
1016float Voxel::getVolume(){
+
1017
+
1018 const vec3 &size = getSize();
+
1019
+
1020 return size.x*size.y*size.z;
+
1021}
1022
-
1023 const vec3 &size = getSize();
+
1023vec3 Voxel::getCenter() const{
1024
-
1025 return size.x*size.y*size.z;
-
1026}
-
1027
-
1028vec3 Voxel::getCenter() const{
-
1029
-
1030 vec3 center;
-
1031 vec3 Y;
-
1032 Y.x = 0.f;
-
1033 Y.y = 0.f;
-
1034 Y.z = 0.f;
-
1035
-
1036 center.x = transform[0] * Y.x + transform[1] * Y.y + transform[2] * Y.z + transform[3];
-
1037 center.y = transform[4] * Y.x + transform[5] * Y.y + transform[6] * Y.z + transform[7];
-
1038 center.z = transform[8] * Y.x + transform[9] * Y.y + transform[10] * Y.z + transform[11];
-
1039
-
1040 return center;
-
1041
-
1042}
+
1025 vec3 center;
+
1026 vec3 Y;
+
1027 Y.x = 0.f;
+
1028 Y.y = 0.f;
+
1029 Y.z = 0.f;
+
1030
+
1031 center.x = transform[0] * Y.x + transform[1] * Y.y + transform[2] * Y.z + transform[3];
+
1032 center.y = transform[4] * Y.x + transform[5] * Y.y + transform[6] * Y.z + transform[7];
+
1033 center.z = transform[8] * Y.x + transform[9] * Y.y + transform[10] * Y.z + transform[11];
+
1034
+
1035 return center;
+
1036
+
1037}
+
1038
+
1039vec3 Voxel::getSize(){
+
1040
+
1041 vec3 n0(0,0,0), nx(1,0,0), ny(0,1,0), nz(0,0,1);
+
1042 vec3 n0_T, nx_T, ny_T, nz_T;
1043
-
1044vec3 Voxel::getSize(){
-
1045
-
1046 vec3 n0(0,0,0), nx(1,0,0), ny(0,1,0), nz(0,0,1);
-
1047 vec3 n0_T, nx_T, ny_T, nz_T;
+
1044 vecmult(transform,n0,n0_T);
+
1045 vecmult(transform,nx,nx_T);
+
1046 vecmult(transform,ny,ny_T);
+
1047 vecmult(transform,nz,nz_T);
1048
-
1049 vecmult(transform,n0,n0_T);
-
1050 vecmult(transform,nx,nx_T);
-
1051 vecmult(transform,ny,ny_T);
-
1052 vecmult(transform,nz,nz_T);
-
1053
-
1054 float x = (nx_T-n0_T).magnitude();
-
1055 float y = (ny_T-n0_T).magnitude();
-
1056 float z = (nz_T-n0_T).magnitude();
-
1057
-
1058 return make_vec3(x,y,z);
-
1059
-
1060}
-
1061
-
-
1062void Context::setDate( int day, int month, int year ){
-
1063
-
1064 if( day<1 || day>31 ){
-
1065 helios_runtime_error("ERROR (Context::setDate): Day of month is out of range (day of " + std::to_string(day) + " was given).");
-
1066 }else if( month<1 || month>12){
-
1067 helios_runtime_error("ERROR (Context::setDate): Month of year is out of range (month of " + std::to_string(month) + " was given).");
-
1068 }else if( year<1000 ){
-
1069 helios_runtime_error("ERROR (Context::setDate): Year should be specified in YYYY format.");
-
1070 }
-
1071
-
1072 sim_date = make_Date(day,month,year);
-
1073
-
1074}
-
-
1075
-
-
1076void Context::setDate(const Date &date ){
-
1077
-
1078 if( date.day<1 || date.day>31 ){
-
1079 helios_runtime_error("ERROR (Context::setDate): Day of month is out of range (day of " + std::to_string(date.day) + " was given).");
-
1080 }else if( date.month<1 || date.month>12){
-
1081 helios_runtime_error("ERROR (Context::setDate): Month of year is out of range (month of " + std::to_string(date.month) + " was given).");
-
1082 }else if( date.year<1000 ){
-
1083 helios_runtime_error("ERROR (Context::setDate): Year should be specified in YYYY format.");
-
1084 }
-
1085
-
1086 sim_date = date;
-
1087
-
1088}
-
-
1089
-
-
1090void Context::setDate( int Julian_day, int year ){
-
1091
-
1092 if( Julian_day<1 || Julian_day>366 ){
-
1093 helios_runtime_error("ERROR (Context::setDate): Julian day out of range.");
-
1094 }else if( year<1000 ){
-
1095 helios_runtime_error("ERROR (Context::setDate): Year should be specified in YYYY format.");
-
1096 }
-
1097
-
1098 sim_date = CalendarDay( Julian_day, year );
-
1099
-
1100}
-
-
1101
-
-
1102Date Context::getDate() const{
-
1103 return sim_date;
-
1104}
-
-
1105
-
-
1106const char* Context::getMonthString() const{
-
1107 if( sim_date.month==1 ){
-
1108 return "JAN";
-
1109 }else if( sim_date.month==2 ){
-
1110 return "FEB";
-
1111 }else if( sim_date.month==3 ){
-
1112 return "MAR";
-
1113 }else if( sim_date.month==4 ){
-
1114 return "APR";
-
1115 }else if( sim_date.month==5 ){
-
1116 return "MAY";
-
1117 }else if( sim_date.month==6 ){
-
1118 return "JUN";
-
1119 }else if( sim_date.month==7 ){
-
1120 return "JUL";
-
1121 }else if( sim_date.month==8 ){
-
1122 return "AUG";
-
1123 }else if( sim_date.month==9 ){
-
1124 return "SEP";
-
1125 }else if( sim_date.month==10 ){
-
1126 return "OCT";
-
1127 }else if( sim_date.month==11 ){
-
1128 return "NOV";
-
1129 }else{
-
1130 return "DEC";
-
1131 }
-
1132
-
1133}
-
-
1134
-
-
1135int Context::getJulianDate() const{
-
1136 return JulianDay( sim_date.day, sim_date.month, sim_date.year );
-
1137}
-
-
1138
-
-
1139void Context::setTime( int minute, int hour ){
-
1140 setTime(0,minute,hour);
-
1141}
-
-
1142
-
-
1143void Context::setTime( int second, int minute, int hour ){
-
1144
-
1145 if( second<0 || second>59 ){
-
1146 helios_runtime_error("ERROR (Context::setTime): Second out of range (0-59).");
-
1147 }else if( minute<0 || minute>59 ){
-
1148 helios_runtime_error("ERROR (Context::setTime): Minute out of range (0-59).");
-
1149 }else if( hour<0 || hour>23 ){
-
1150 helios_runtime_error("ERROR (Context::setTime): Hour out of range (0-23).");
-
1151 }
-
1152
-
1153 sim_time = make_Time(hour,minute,second);
-
1154
-
1155}
-
-
1156
-
-
1157void Context::setTime(const Time &time ){
-
1158
-
1159 if( time.minute<0 || time.minute>59 ){
-
1160 helios_runtime_error("ERROR (Context::setTime): Minute out of range (0-59).");
-
1161 }else if( time.hour<0 || time.hour>23 ){
-
1162 helios_runtime_error("ERROR (Context::setTime): Hour out of range (0-23).");
-
1163 }
-
1164
-
1165 sim_time = time;
-
1166
-
1167}
-
-
1168
-
-
1169Time Context::getTime() const{
-
1170 return sim_time;
-
1171}
-
-
1172
-
-
1173float Context::randu(){
-
1174 return unif_distribution(generator);
-
1175}
-
-
1176
-
-
1177float Context::randu( float minrange, float maxrange ){
-
1178 if( maxrange<minrange ){
-
1179 helios_runtime_error("ERROR (Context::randu): Maximum value of range must be greater than minimum value of range.");
-
1180 return 0;
-
1181 }else if( maxrange==minrange ){
-
1182 return minrange;
-
1183 }else{
-
1184 return minrange+unif_distribution(generator)*(maxrange-minrange);
-
1185 }
-
1186}
-
-
1187
-
-
1188int Context::randu( int minrange, int maxrange ){
-
1189 if( maxrange<minrange ){
-
1190 helios_runtime_error("ERROR (Context::randu): Maximum value of range must be greater than minimum value of range.");
-
1191 return 0;
-
1192 }else if( maxrange==minrange ){
-
1193 return minrange;
-
1194 }else{
-
1195 return minrange+(int)lroundf(unif_distribution(generator)*float(maxrange-minrange));
-
1196 }
-
1197}
-
-
1198
-
-
1199float Context::randn(){
-
1200 return norm_distribution(generator);
-
1201}
-
-
1202
-
-
1203float Context::randn( float mean, float stddev ){
-
1204 return mean+norm_distribution(generator)*fabsf(stddev);
-
1205}
-
-
1206
-
-
1207uint Context::addPatch(){
-
1208 return addPatch(make_vec3(0,0,0),make_vec2(1,1),make_SphericalCoord(0,0),make_RGBAcolor(0,0,0,1));
-
1209}
-
-
1210
-
-
1211uint Context::addPatch( const vec3& center, const vec2& size ){
-
1212 return addPatch(center,size,make_SphericalCoord(0,0),make_RGBAcolor(0,0,0,1));
-
1213}
-
-
1214
-
-
1215uint Context::addPatch( const vec3& center, const vec2& size, const SphericalCoord& rotation ){
-
1216 return addPatch(center,size,rotation,make_RGBAcolor(0,0,0,1));
-
1217}
-
-
1218
-
-
1219uint Context::addPatch( const vec3& center, const vec2& size, const SphericalCoord& rotation, const RGBcolor& color ){
-
1220 return addPatch(center,size,rotation,make_RGBAcolor(color,1));
-
1221}
-
-
1222
-
-
1223uint Context::addPatch( const vec3& center, const vec2& size, const SphericalCoord& rotation, const RGBAcolor& color ){
-
1224
-
1225 if( size.x==0 || size.y==0 ){
-
1226 helios_runtime_error("ERROR (Context::addPatch): Size of patch must be greater than 0.");
-
1227 }
-
1228
-
1229 auto* patch_new = (new Patch( color, 0, currentUUID ));
-
1230
-
1231// if( patch_new->getArea()==0 ){
-
1232// helios_runtime_error("ERROR (Context::addPatch): Patch has area of zero.");
-
1233// }
-
1234
-
1235 patch_new->scale( make_vec3(size.x,size.y,1) );
-
1236
-
1237 if( rotation.elevation!=0 ){
-
1238 patch_new->rotate(-rotation.elevation, "x");
-
1239 }
-
1240 if( rotation.azimuth!=0 ){
-
1241 patch_new->rotate(-rotation.azimuth, "z");
-
1242 }
-
1243
-
1244 patch_new->translate( center );
-
1245
-
1246 primitives[currentUUID] = patch_new;
-
1247 markGeometryDirty();
-
1248 currentUUID++;
-
1249 return currentUUID-1;
-
1250}
-
-
1251
-
-
1252uint Context::addPatch( const vec3& center, const vec2& size, const SphericalCoord& rotation, const char* texture_file ){
-
1253
-
1254 addTexture( texture_file );
-
1255
-
1256 auto* patch_new = (new Patch( texture_file, textures.at(texture_file).getSolidFraction(), 0, currentUUID ));
-
1257
-
1258// if( patch_new->getArea()==0 ){
-
1259// helios_runtime_error("ERROR (Context::addPatch): Patch has area of zero.");
-
1260// }
-
1261
-
1262 assert( size.x>0.f && size.y>0.f );
-
1263 patch_new->scale( make_vec3(size.x,size.y,1) );
-
1264
-
1265 if( rotation.elevation!=0 ){
-
1266 patch_new->rotate(-rotation.elevation, "x");
-
1267 }
-
1268 if( rotation.azimuth!=0 ){
-
1269 patch_new->rotate(-rotation.azimuth, "z");
-
1270 }
-
1271
-
1272 patch_new->translate( center );
-
1273
-
1274 primitives[currentUUID] = patch_new;
-
1275 markGeometryDirty();
-
1276 currentUUID++;
-
1277 return currentUUID-1;
-
1278}
-
-
1279
-
-
1280uint Context::addPatch( const vec3& center, const vec2& size, const SphericalCoord& rotation, const char* texture_file, const helios::vec2& uv_center, const helios::vec2& uv_size ){
-
1281
-
1282 if( size.x==0 || size.y==0 ){
-
1283 helios_runtime_error("ERROR (Context::addPatch): Size of patch must be greater than 0.");
-
1284 }
-
1285
-
1286 if( uv_center.x-0.5*uv_size.x<-1e-3 || uv_center.y-0.5*uv_size.y<-1e-3 || uv_center.x+0.5*uv_size.x-1.f>1e-3 || uv_center.y+0.5*uv_size.y-1.f>1e-3 ){
-
1287 helios_runtime_error("ERROR (Context::addPatch): Invalid texture coordinates. uv_center-0.5*uv_size should be >=0 and uv_center+0.5*uv_size should be <=1.");
-
1288 }
-
1289
-
1290 addTexture( texture_file );
-
1291
-
1292 std::vector<helios::vec2> uv;
-
1293 uv.resize(4);
-
1294 uv.at(0) = uv_center+make_vec2(-0.5f*uv_size.x,-0.5f*uv_size.y);
-
1295 uv.at(1) = uv_center+make_vec2(+0.5f*uv_size.x,-0.5f*uv_size.y);
-
1296 uv.at(2) = uv_center+make_vec2(+0.5f*uv_size.x,+0.5f*uv_size.y);
-
1297 uv.at(3) = uv_center+make_vec2(-0.5f*uv_size.x,+0.5f*uv_size.y);
-
1298
-
1299 auto* patch_new = (new Patch( texture_file, uv, textures, 0, currentUUID ));
-
1300
-
1301// if( patch_new->getArea()==0 ){
-
1302// helios_runtime_error("ERROR (Context::addPatch): Patch has area of zero.");
-
1303// }
-
1304
-
1305 assert( size.x>0.f && size.y>0.f );
-
1306 patch_new->scale( make_vec3(size.x,size.y,1) );
-
1307
-
1308 if( rotation.elevation!=0 ){
-
1309 patch_new->rotate(-rotation.elevation, "x");
-
1310 }
-
1311 if( rotation.azimuth!=0 ){
-
1312 patch_new->rotate(-rotation.azimuth, "z");
-
1313 }
-
1314
-
1315 patch_new->translate( center );
-
1316
-
1317 primitives[currentUUID] = patch_new;
-
1318 markGeometryDirty();
-
1319 currentUUID++;
-
1320 return currentUUID-1;
-
1321}
-
-
1322
-
-
1323uint Context::addTriangle( const vec3& vertex0, const vec3& vertex1, const vec3& vertex2 ){
-
1324 return addTriangle( vertex0, vertex1, vertex2, make_RGBAcolor(0,0,0,1) );
-
1325}
-
-
1326
-
-
1327uint Context::addTriangle( const vec3& vertex0, const vec3& vertex1, const vec3& vertex2, const RGBcolor& color ){
-
1328 return addTriangle( vertex0, vertex1, vertex2, make_RGBAcolor(color,1) );
-
1329}
-
-
1330
-
-
1331uint Context::addTriangle( const vec3& vertex0, const vec3& vertex1, const vec3& vertex2, const RGBAcolor& color ){
-
1332
-
1333 auto* tri_new = (new Triangle( vertex0, vertex1, vertex2, color, 0, currentUUID ));
-
1334
-
1335// if( tri_new->getArea()==0 ){
-
1336// helios_runtime_error("ERROR (Context::addTriangle): Triangle has area of zero.");
-
1337// }
-
1338
-
1339 primitives[currentUUID] = tri_new;
-
1340 markGeometryDirty();
-
1341 currentUUID++;
-
1342 return currentUUID-1;
-
1343}
-
-
1344
-
-
1345uint Context::addTriangle( const helios::vec3& vertex0, const helios::vec3& vertex1, const helios::vec3& vertex2, const char* texture_file, const helios::vec2& uv0, const helios::vec2& uv1, const helios::vec2& uv2 ){
-
1346
-
1347 addTexture( texture_file );
-
1348
-
1349 std::vector<helios::vec2> uv;
-
1350 uv.resize(3);
-
1351 uv.at(0) = uv0;
-
1352 uv.at(1) = uv1;
-
1353 uv.at(2) = uv2;
-
1354
-
1355 auto* tri_new = (new Triangle( vertex0, vertex1, vertex2, texture_file, uv, textures, 0, currentUUID ));
-
1356
-
1357// if( tri_new->getArea()==0 ){
-
1358// helios_runtime_error("ERROR (Context::addTriangle): Triangle has area of zero.");
-
1359// }
-
1360
-
1361 primitives[currentUUID] = tri_new;
-
1362 markGeometryDirty();
-
1363 currentUUID++;
-
1364 return currentUUID-1;
-
1365}
-
-
1366
-
-
1367uint Context::addVoxel( const vec3& center, const vec3& size ){
-
1368 return addVoxel(center,size,0,make_RGBAcolor(0,0,0,1));
-
1369}
-
-
1370
-
-
1371uint Context::addVoxel( const vec3& center, const vec3& size, const float& rotation ){
-
1372 return addVoxel(center,size,rotation,make_RGBAcolor(0,0,0,1));
-
1373}
-
-
1374
-
-
1375uint Context::addVoxel( const vec3& center, const vec3& size, const float& rotation, const RGBcolor& color ){
-
1376 return addVoxel(center,size,rotation,make_RGBAcolor(color,1));
-
1377}
-
-
1378
-
-
1379uint Context::addVoxel( const vec3& center, const vec3& size, const float& rotation, const RGBAcolor& color ){
-
1380
-
1381 auto* voxel_new = (new Voxel( color, 0, currentUUID ));
-
1382
-
1383 if( size.x*size.y*size.z==0 ){
-
1384 helios_runtime_error("ERROR (Context::addVoxel): Voxel has size of zero.");
-
1385 }
-
1386
-
1387 voxel_new->scale( size );
-
1388
-
1389 if( rotation!=0 ){
-
1390 voxel_new->rotate( rotation, "z" );
-
1391 }
-
1392
-
1393 voxel_new->translate( center );
-
1394
-
1395 primitives[currentUUID] = voxel_new;
-
1396 markGeometryDirty();
-
1397 currentUUID++;
-
1398 return currentUUID-1;
-
1399}
-
-
1400
-
-
1401void Context::translatePrimitive(uint UUID, const vec3& shift ){
-
1402 getPrimitivePointer_private(UUID)->translate(shift);
-
1403}
-
+
1049 float x = (nx_T-n0_T).magnitude();
+
1050 float y = (ny_T-n0_T).magnitude();
+
1051 float z = (nz_T-n0_T).magnitude();
+
1052
+
1053 return make_vec3(x,y,z);
+
1054
+
1055}
+
1056
+
+
1057void Context::setDate( int day, int month, int year ){
+
1058
+
1059 if( day<1 || day>31 ){
+
1060 helios_runtime_error("ERROR (Context::setDate): Day of month is out of range (day of " + std::to_string(day) + " was given).");
+
1061 }else if( month<1 || month>12){
+
1062 helios_runtime_error("ERROR (Context::setDate): Month of year is out of range (month of " + std::to_string(month) + " was given).");
+
1063 }else if( year<1000 ){
+
1064 helios_runtime_error("ERROR (Context::setDate): Year should be specified in YYYY format.");
+
1065 }
+
1066
+
1067 sim_date = make_Date(day,month,year);
+
1068
+
1069}
+
+
1070
+
+
1071void Context::setDate(const Date &date ){
+
1072
+
1073 if( date.day<1 || date.day>31 ){
+
1074 helios_runtime_error("ERROR (Context::setDate): Day of month is out of range (day of " + std::to_string(date.day) + " was given).");
+
1075 }else if( date.month<1 || date.month>12){
+
1076 helios_runtime_error("ERROR (Context::setDate): Month of year is out of range (month of " + std::to_string(date.month) + " was given).");
+
1077 }else if( date.year<1000 ){
+
1078 helios_runtime_error("ERROR (Context::setDate): Year should be specified in YYYY format.");
+
1079 }
+
1080
+
1081 sim_date = date;
+
1082
+
1083}
+
+
1084
+
+
1085void Context::setDate( int Julian_day, int year ){
+
1086
+
1087 if( Julian_day<1 || Julian_day>366 ){
+
1088 helios_runtime_error("ERROR (Context::setDate): Julian day out of range.");
+
1089 }else if( year<1000 ){
+
1090 helios_runtime_error("ERROR (Context::setDate): Year should be specified in YYYY format.");
+
1091 }
+
1092
+
1093 sim_date = CalendarDay( Julian_day, year );
+
1094
+
1095}
+
+
1096
+
+
1097Date Context::getDate() const{
+
1098 return sim_date;
+
1099}
+
+
1100
+
+
1101const char* Context::getMonthString() const{
+
1102 if( sim_date.month==1 ){
+
1103 return "JAN";
+
1104 }else if( sim_date.month==2 ){
+
1105 return "FEB";
+
1106 }else if( sim_date.month==3 ){
+
1107 return "MAR";
+
1108 }else if( sim_date.month==4 ){
+
1109 return "APR";
+
1110 }else if( sim_date.month==5 ){
+
1111 return "MAY";
+
1112 }else if( sim_date.month==6 ){
+
1113 return "JUN";
+
1114 }else if( sim_date.month==7 ){
+
1115 return "JUL";
+
1116 }else if( sim_date.month==8 ){
+
1117 return "AUG";
+
1118 }else if( sim_date.month==9 ){
+
1119 return "SEP";
+
1120 }else if( sim_date.month==10 ){
+
1121 return "OCT";
+
1122 }else if( sim_date.month==11 ){
+
1123 return "NOV";
+
1124 }else{
+
1125 return "DEC";
+
1126 }
+
1127
+
1128}
+
+
1129
+
+
1130int Context::getJulianDate() const{
+
1131 return JulianDay( sim_date.day, sim_date.month, sim_date.year );
+
1132}
+
+
1133
+
+
1134void Context::setTime( int minute, int hour ){
+
1135 setTime(0,minute,hour);
+
1136}
+
+
1137
+
+
1138void Context::setTime( int second, int minute, int hour ){
+
1139
+
1140 if( second<0 || second>59 ){
+
1141 helios_runtime_error("ERROR (Context::setTime): Second out of range (0-59).");
+
1142 }else if( minute<0 || minute>59 ){
+
1143 helios_runtime_error("ERROR (Context::setTime): Minute out of range (0-59).");
+
1144 }else if( hour<0 || hour>23 ){
+
1145 helios_runtime_error("ERROR (Context::setTime): Hour out of range (0-23).");
+
1146 }
+
1147
+
1148 sim_time = make_Time(hour,minute,second);
+
1149
+
1150}
+
+
1151
+
+
1152void Context::setTime(const Time &time ){
+
1153
+
1154 if( time.minute<0 || time.minute>59 ){
+
1155 helios_runtime_error("ERROR (Context::setTime): Minute out of range (0-59).");
+
1156 }else if( time.hour<0 || time.hour>23 ){
+
1157 helios_runtime_error("ERROR (Context::setTime): Hour out of range (0-23).");
+
1158 }
+
1159
+
1160 sim_time = time;
+
1161
+
1162}
+
+
1163
+
+
1164Time Context::getTime() const{
+
1165 return sim_time;
+
1166}
+
+
1167
+
+
1168float Context::randu(){
+
1169 return unif_distribution(generator);
+
1170}
+
+
1171
+
+
1172float Context::randu( float minrange, float maxrange ){
+
1173 if( maxrange<minrange ){
+
1174 helios_runtime_error("ERROR (Context::randu): Maximum value of range must be greater than minimum value of range.");
+
1175 return 0;
+
1176 }else if( maxrange==minrange ){
+
1177 return minrange;
+
1178 }else{
+
1179 return minrange+unif_distribution(generator)*(maxrange-minrange);
+
1180 }
+
1181}
+
+
1182
+
+
1183int Context::randu( int minrange, int maxrange ){
+
1184 if( maxrange<minrange ){
+
1185 helios_runtime_error("ERROR (Context::randu): Maximum value of range must be greater than minimum value of range.");
+
1186 return 0;
+
1187 }else if( maxrange==minrange ){
+
1188 return minrange;
+
1189 }else{
+
1190 return minrange+(int)lroundf(unif_distribution(generator)*float(maxrange-minrange));
+
1191 }
+
1192}
+
+
1193
+
+
1194float Context::randn(){
+
1195 return norm_distribution(generator);
+
1196}
+
+
1197
+
+
1198float Context::randn( float mean, float stddev ){
+
1199 return mean+norm_distribution(generator)*fabsf(stddev);
+
1200}
+
+
1201
+
+
1202uint Context::addPatch(){
+
1203 return addPatch(make_vec3(0,0,0),make_vec2(1,1),make_SphericalCoord(0,0),make_RGBAcolor(0,0,0,1));
+
1204}
+
+
1205
+
+
1206uint Context::addPatch( const vec3& center, const vec2& size ){
+
1207 return addPatch(center,size,make_SphericalCoord(0,0),make_RGBAcolor(0,0,0,1));
+
1208}
+
+
1209
+
+
1210uint Context::addPatch( const vec3& center, const vec2& size, const SphericalCoord& rotation ){
+
1211 return addPatch(center,size,rotation,make_RGBAcolor(0,0,0,1));
+
1212}
+
+
1213
+
+
1214uint Context::addPatch( const vec3& center, const vec2& size, const SphericalCoord& rotation, const RGBcolor& color ){
+
1215 return addPatch(center,size,rotation,make_RGBAcolor(color,1));
+
1216}
+
+
1217
+
+
1218uint Context::addPatch( const vec3& center, const vec2& size, const SphericalCoord& rotation, const RGBAcolor& color ){
+
1219
+
1220 if( size.x==0 || size.y==0 ){
+
1221 helios_runtime_error("ERROR (Context::addPatch): Size of patch must be greater than 0.");
+
1222 }
+
1223
+
1224 auto* patch_new = (new Patch( color, 0, currentUUID ));
+
1225
+
1226// if( patch_new->getArea()==0 ){
+
1227// helios_runtime_error("ERROR (Context::addPatch): Patch has area of zero.");
+
1228// }
+
1229
+
1230 patch_new->scale( make_vec3(size.x,size.y,1) );
+
1231
+
1232 if( rotation.elevation!=0 ){
+
1233 patch_new->rotate(-rotation.elevation, "x");
+
1234 }
+
1235 if( rotation.azimuth!=0 ){
+
1236 patch_new->rotate(-rotation.azimuth, "z");
+
1237 }
+
1238
+
1239 patch_new->translate( center );
+
1240
+
1241 primitives[currentUUID] = patch_new;
+
1242 markGeometryDirty();
+
1243 currentUUID++;
+
1244 return currentUUID-1;
+
1245}
+
+
1246
+
+
1247uint Context::addPatch( const vec3& center, const vec2& size, const SphericalCoord& rotation, const char* texture_file ){
+
1248
+
1249 addTexture( texture_file );
+
1250
+
1251 auto* patch_new = (new Patch( texture_file, textures.at(texture_file).getSolidFraction(), 0, currentUUID ));
+
1252
+
1253// if( patch_new->getArea()==0 ){
+
1254// helios_runtime_error("ERROR (Context::addPatch): Patch has area of zero.");
+
1255// }
+
1256
+
1257 assert( size.x>0.f && size.y>0.f );
+
1258 patch_new->scale( make_vec3(size.x,size.y,1) );
+
1259
+
1260 if( rotation.elevation!=0 ){
+
1261 patch_new->rotate(-rotation.elevation, "x");
+
1262 }
+
1263 if( rotation.azimuth!=0 ){
+
1264 patch_new->rotate(-rotation.azimuth, "z");
+
1265 }
+
1266
+
1267 patch_new->translate( center );
+
1268
+
1269 primitives[currentUUID] = patch_new;
+
1270 markGeometryDirty();
+
1271 currentUUID++;
+
1272 return currentUUID-1;
+
1273}
+
+
1274
+
+
1275uint Context::addPatch( const vec3& center, const vec2& size, const SphericalCoord& rotation, const char* texture_file, const helios::vec2& uv_center, const helios::vec2& uv_size ){
+
1276
+
1277 if( size.x==0 || size.y==0 ){
+
1278 helios_runtime_error("ERROR (Context::addPatch): Size of patch must be greater than 0.");
+
1279 }
+
1280
+
1281 if( uv_center.x-0.5*uv_size.x<-1e-3 || uv_center.y-0.5*uv_size.y<-1e-3 || uv_center.x+0.5*uv_size.x-1.f>1e-3 || uv_center.y+0.5*uv_size.y-1.f>1e-3 ){
+
1282 helios_runtime_error("ERROR (Context::addPatch): Invalid texture coordinates. uv_center-0.5*uv_size should be >=0 and uv_center+0.5*uv_size should be <=1.");
+
1283 }
+
1284
+
1285 addTexture( texture_file );
+
1286
+
1287 std::vector<helios::vec2> uv;
+
1288 uv.resize(4);
+
1289 uv.at(0) = uv_center+make_vec2(-0.5f*uv_size.x,-0.5f*uv_size.y);
+
1290 uv.at(1) = uv_center+make_vec2(+0.5f*uv_size.x,-0.5f*uv_size.y);
+
1291 uv.at(2) = uv_center+make_vec2(+0.5f*uv_size.x,+0.5f*uv_size.y);
+
1292 uv.at(3) = uv_center+make_vec2(-0.5f*uv_size.x,+0.5f*uv_size.y);
+
1293
+
1294 auto* patch_new = (new Patch( texture_file, uv, textures, 0, currentUUID ));
+
1295
+
1296// if( patch_new->getArea()==0 ){
+
1297// helios_runtime_error("ERROR (Context::addPatch): Patch has area of zero.");
+
1298// }
+
1299
+
1300 assert( size.x>0.f && size.y>0.f );
+
1301 patch_new->scale( make_vec3(size.x,size.y,1) );
+
1302
+
1303 if( rotation.elevation!=0 ){
+
1304 patch_new->rotate(-rotation.elevation, "x");
+
1305 }
+
1306 if( rotation.azimuth!=0 ){
+
1307 patch_new->rotate(-rotation.azimuth, "z");
+
1308 }
+
1309
+
1310 patch_new->translate( center );
+
1311
+
1312 primitives[currentUUID] = patch_new;
+
1313 markGeometryDirty();
+
1314 currentUUID++;
+
1315 return currentUUID-1;
+
1316}
+
+
1317
+
+
1318uint Context::addTriangle( const vec3& vertex0, const vec3& vertex1, const vec3& vertex2 ){
+
1319 return addTriangle( vertex0, vertex1, vertex2, make_RGBAcolor(0,0,0,1) );
+
1320}
+
+
1321
+
+
1322uint Context::addTriangle( const vec3& vertex0, const vec3& vertex1, const vec3& vertex2, const RGBcolor& color ){
+
1323 return addTriangle( vertex0, vertex1, vertex2, make_RGBAcolor(color,1) );
+
1324}
+
+
1325
+
+
1326uint Context::addTriangle( const vec3& vertex0, const vec3& vertex1, const vec3& vertex2, const RGBAcolor& color ){
+
1327
+
1328 auto* tri_new = (new Triangle( vertex0, vertex1, vertex2, color, 0, currentUUID ));
+
1329
+
1330// if( tri_new->getArea()==0 ){
+
1331// helios_runtime_error("ERROR (Context::addTriangle): Triangle has area of zero.");
+
1332// }
+
1333
+
1334 primitives[currentUUID] = tri_new;
+
1335 markGeometryDirty();
+
1336 currentUUID++;
+
1337 return currentUUID-1;
+
1338}
+
+
1339
+
+
1340uint Context::addTriangle( const helios::vec3& vertex0, const helios::vec3& vertex1, const helios::vec3& vertex2, const char* texture_file, const helios::vec2& uv0, const helios::vec2& uv1, const helios::vec2& uv2 ){
+
1341
+
1342 addTexture( texture_file );
+
1343
+
1344 std::vector<helios::vec2> uv;
+
1345 uv.resize(3);
+
1346 uv.at(0) = uv0;
+
1347 uv.at(1) = uv1;
+
1348 uv.at(2) = uv2;
+
1349
+
1350 auto* tri_new = (new Triangle( vertex0, vertex1, vertex2, texture_file, uv, textures, 0, currentUUID ));
+
1351
+
1352// if( tri_new->getArea()==0 ){
+
1353// helios_runtime_error("ERROR (Context::addTriangle): Triangle has area of zero.");
+
1354// }
+
1355
+
1356 primitives[currentUUID] = tri_new;
+
1357 markGeometryDirty();
+
1358 currentUUID++;
+
1359 return currentUUID-1;
+
1360}
+
+
1361
+
+
1362uint Context::addVoxel( const vec3& center, const vec3& size ){
+
1363 return addVoxel(center,size,0,make_RGBAcolor(0,0,0,1));
+
1364}
+
+
1365
+
+
1366uint Context::addVoxel( const vec3& center, const vec3& size, const float& rotation ){
+
1367 return addVoxel(center,size,rotation,make_RGBAcolor(0,0,0,1));
+
1368}
+
+
1369
+
+
1370uint Context::addVoxel( const vec3& center, const vec3& size, const float& rotation, const RGBcolor& color ){
+
1371 return addVoxel(center,size,rotation,make_RGBAcolor(color,1));
+
1372}
+
+
1373
+
+
1374uint Context::addVoxel( const vec3& center, const vec3& size, const float& rotation, const RGBAcolor& color ){
+
1375
+
1376 auto* voxel_new = (new Voxel( color, 0, currentUUID ));
+
1377
+
1378 if( size.x*size.y*size.z==0 ){
+
1379 helios_runtime_error("ERROR (Context::addVoxel): Voxel has size of zero.");
+
1380 }
+
1381
+
1382 voxel_new->scale( size );
+
1383
+
1384 if( rotation!=0 ){
+
1385 voxel_new->rotate( rotation, "z" );
+
1386 }
+
1387
+
1388 voxel_new->translate( center );
+
1389
+
1390 primitives[currentUUID] = voxel_new;
+
1391 markGeometryDirty();
+
1392 currentUUID++;
+
1393 return currentUUID-1;
+
1394}
+
+
1395
+
+
1396void Context::translatePrimitive(uint UUID, const vec3& shift ){
+
1397 getPrimitivePointer_private(UUID)->translate(shift);
+
1398}
+
+
1399
+
+
1400void Context::translatePrimitive( const std::vector<uint>& UUIDs, const vec3& shift ){
+
1401
+
1402 float T[16];
+
1403 makeTranslationMatrix(shift,T);
1404
-
-
1405void Context::translatePrimitive( const std::vector<uint>& UUIDs, const vec3& shift ){
-
1406
-
1407 float T[16];
-
1408 makeTranslationMatrix(shift,T);
+
1405 for( uint UUID : UUIDs){
+
1406 getPrimitivePointer_private(UUID)->applyTransform(T);
+
1407 }
+
1408}
+
1409
-
1410 for( uint UUID : UUIDs){
-
1411 getPrimitivePointer_private(UUID)->applyTransform(T);
-
1412 }
-
1413}
-
-
1414
-
-
1415void Context::rotatePrimitive(uint UUID, float rot, const char* axis ){
-
1416 getPrimitivePointer_private(UUID)->rotate(rot,axis);
-
1417}
-
-
1418
-
-
1419void Context::rotatePrimitive( const std::vector<uint>& UUIDs, float rot, const char* axis ){
-
1420
-
1421 if( rot==0 ){
-
1422 return;
-
1423 }
-
1424
-
1425 float T[16];
-
1426 if( strcmp(axis,"z")==0 ){
-
1427 makeRotationMatrix(rot,"z",T);
-
1428 }else if( strcmp(axis,"y")==0 ){
-
1429 makeRotationMatrix(rot,"y",T);
-
1430 }else if( strcmp(axis,"x")==0 ){
-
1431 makeRotationMatrix(rot,"x",T);
-
1432 }else{
-
1433 helios_runtime_error( "ERROR (Context::rotatePrimitive): Rotation axis should be one of x, y, or z." );
-
1434 }
-
1435
-
1436 for( uint UUID : UUIDs){
-
1437 if( strcmp(axis,"z")!=0 && getPrimitivePointer_private(UUID)->getType()==PRIMITIVE_TYPE_VOXEL ){
-
1438 std::cerr << "WARNING (Context::rotatePrimitive): Voxels can only be rotate about the z-axis. Ignoring this rotation." << std::endl;
-
1439 }
-
1440 getPrimitivePointer_private(UUID)->applyTransform(T);
-
1441 }
-
1442}
-
-
1443
-
-
1444void Context::rotatePrimitive(uint UUID, float rot, const helios::vec3& axis ){
-
1445 getPrimitivePointer_private(UUID)->rotate(rot,axis);
-
1446}
-
-
1447
-
-
1448void Context::rotatePrimitive(const std::vector<uint>& UUIDs, float rot, const vec3 &axis ){
-
1449
-
1450 if( rot==0 ){
-
1451 return;
-
1452 }
-
1453
-
1454 float T[16];
-
1455 makeRotationMatrix(rot,axis,T);
-
1456
-
1457 for( uint UUID : UUIDs){
-
1458 if( getPrimitivePointer_private(UUID)->getType()==PRIMITIVE_TYPE_VOXEL ){
-
1459 std::cerr << "WARNING (Context::rotatePrimitive): Voxels can only be rotate about the z-axis. Ignoring this rotation." << std::endl;
-
1460 }
-
1461 getPrimitivePointer_private(UUID)->applyTransform(T);
-
1462 }
-
1463}
-
-
1464
-
-
1465void Context::rotatePrimitive( uint UUID, float rot, const helios::vec3& origin, const helios::vec3& axis ){
-
1466 getPrimitivePointer_private(UUID)->rotate(rot,origin,axis);
-
1467}
-
-
1468
-
-
1469void Context::rotatePrimitive(const std::vector<uint>& UUIDs, float rot, const helios::vec3& origin, const vec3 &axis ){
-
1470
-
1471 if( rot==0 ){
-
1472 return;
-
1473 }
-
1474
-
1475 float T[16];
-
1476 makeRotationMatrix(rot,origin,axis,T);
-
1477
-
1478 for( uint UUID : UUIDs){
-
1479 if( getPrimitivePointer_private(UUID)->getType()==PRIMITIVE_TYPE_VOXEL ){
-
1480 std::cerr << "WARNING (Context::rotatePrimitive): Voxels can only be rotate about the z-axis. Ignoring this rotation." << std::endl;
-
1481 }
-
1482 getPrimitivePointer_private(UUID)->applyTransform(T);
-
1483 }
-
1484}
-
-
1485
-
-
1486void Context::scalePrimitive(uint UUID, const helios::vec3& S ){
-
1487
-
1488 if( !doesPrimitiveExist(UUID) ){
-
1489 helios_runtime_error("ERROR (Context::scalePrimitive): UUID of " + std::to_string(UUID) + " not found in the context.");
-
1490 }else if( S.x==1 && S.y==1 && S.z==1 ){
-
1491 return;
-
1492 }
+
+
1410void Context::rotatePrimitive(uint UUID, float rot, const char* axis ){
+
1411 getPrimitivePointer_private(UUID)->rotate(rot,axis);
+
1412}
+
+
1413
+
+
1414void Context::rotatePrimitive( const std::vector<uint>& UUIDs, float rot, const char* axis ){
+
1415
+
1416 if( rot==0 ){
+
1417 return;
+
1418 }
+
1419
+
1420 float T[16];
+
1421 if( strcmp(axis,"z")==0 ){
+
1422 makeRotationMatrix(rot,"z",T);
+
1423 }else if( strcmp(axis,"y")==0 ){
+
1424 makeRotationMatrix(rot,"y",T);
+
1425 }else if( strcmp(axis,"x")==0 ){
+
1426 makeRotationMatrix(rot,"x",T);
+
1427 }else{
+
1428 helios_runtime_error( "ERROR (Context::rotatePrimitive): Rotation axis should be one of x, y, or z." );
+
1429 }
+
1430
+
1431 for( uint UUID : UUIDs){
+
1432 if( strcmp(axis,"z")!=0 && getPrimitivePointer_private(UUID)->getType()==PRIMITIVE_TYPE_VOXEL ){
+
1433 std::cerr << "WARNING (Context::rotatePrimitive): Voxels can only be rotate about the z-axis. Ignoring this rotation." << std::endl;
+
1434 }
+
1435 getPrimitivePointer_private(UUID)->applyTransform(T);
+
1436 }
+
1437}
+
+
1438
+
+
1439void Context::rotatePrimitive(uint UUID, float rot, const helios::vec3& axis ){
+
1440 getPrimitivePointer_private(UUID)->rotate(rot,axis);
+
1441}
+
+
1442
+
+
1443void Context::rotatePrimitive(const std::vector<uint>& UUIDs, float rot, const vec3 &axis ){
+
1444
+
1445 if( rot==0 ){
+
1446 return;
+
1447 }
+
1448
+
1449 float T[16];
+
1450 makeRotationMatrix(rot,axis,T);
+
1451
+
1452 for( uint UUID : UUIDs){
+
1453 if( getPrimitivePointer_private(UUID)->getType()==PRIMITIVE_TYPE_VOXEL ){
+
1454 std::cerr << "WARNING (Context::rotatePrimitive): Voxels can only be rotate about the z-axis. Ignoring this rotation." << std::endl;
+
1455 }
+
1456 getPrimitivePointer_private(UUID)->applyTransform(T);
+
1457 }
+
1458}
+
+
1459
+
+
1460void Context::rotatePrimitive( uint UUID, float rot, const helios::vec3& origin, const helios::vec3& axis ){
+
1461 getPrimitivePointer_private(UUID)->rotate(rot,origin,axis);
+
1462}
+
+
1463
+
+
1464void Context::rotatePrimitive(const std::vector<uint>& UUIDs, float rot, const helios::vec3& origin, const vec3 &axis ){
+
1465
+
1466 if( rot==0 ){
+
1467 return;
+
1468 }
+
1469
+
1470 float T[16];
+
1471 makeRotationMatrix(rot,origin,axis,T);
+
1472
+
1473 for( uint UUID : UUIDs){
+
1474 if( getPrimitivePointer_private(UUID)->getType()==PRIMITIVE_TYPE_VOXEL ){
+
1475 std::cerr << "WARNING (Context::rotatePrimitive): Voxels can only be rotate about the z-axis. Ignoring this rotation." << std::endl;
+
1476 }
+
1477 getPrimitivePointer_private(UUID)->applyTransform(T);
+
1478 }
+
1479}
+
+
1480
+
+
1481void Context::scalePrimitive(uint UUID, const helios::vec3& S ){
+
1482
+
1483 if( !doesPrimitiveExist(UUID) ){
+
1484 helios_runtime_error("ERROR (Context::scalePrimitive): UUID of " + std::to_string(UUID) + " not found in the context.");
+
1485 }else if( S.x==1 && S.y==1 && S.z==1 ){
+
1486 return;
+
1487 }
+
1488
+
1489 float T[16];
+
1490 makeScaleMatrix(S,T);
+
1491
+
1492 getPrimitivePointer_private(UUID)->applyTransform(T);
1493
-
1494 float T[16];
-
1495 makeScaleMatrix(S,T);
-
1496
-
1497 getPrimitivePointer_private(UUID)->applyTransform(T);
-
1498
-
1499}
-
-
1500
-
-
1501void Context::scalePrimitive( const std::vector<uint>& UUIDs, const helios::vec3& S ){
-
1502 for( uint UUID : UUIDs ){
-
1503 scalePrimitive(UUID,S);
-
1504 }
-
1505}
-
-
1506
-
-
1507void Context::scalePrimitiveAboutPoint( uint UUID, const helios::vec3& S, const helios::vec3 point ){
-
1508
-
1509 if( !doesPrimitiveExist(UUID) ){
-
1510 helios_runtime_error("ERROR (Context::scalePrimitiveAboutPoint): UUID of " + std::to_string(UUID) + " not found in the context.");
-
1511 }else if( S.x==1 && S.y==1 && S.z==1 ){
-
1512 return;
-
1513 }
-
1514
-
1515 getPrimitivePointer_private(UUID)->scale(S, point);
-
1516
-
1517}
-
-
1518
-
-
1519void Context::scalePrimitiveAboutPoint( const std::vector<uint>& UUIDs, const helios::vec3& S, const helios::vec3 point ){
-
1520 for( uint UUID : UUIDs ){
-
1521 scalePrimitiveAboutPoint(UUID,S,point);
-
1522 }
-
1523}
-
-
1524
-
-
1525void Context::deletePrimitive( const std::vector<uint>& UUIDs ){
-
1526 for( uint UUID : UUIDs){
-
1527 deletePrimitive( UUID );
-
1528 }
-
1529}
-
-
1530
-
-
1531void Context::deletePrimitive(uint UUID ){
-
1532
-
1533 if( primitives.find(UUID) == primitives.end() ){
-
1534 helios_runtime_error("ERROR (Context::deletePrimitive): UUID of " + std::to_string(UUID) + " not found in the context.");
-
1535 }
-
1536
-
1537 Primitive* prim = primitives.at(UUID);
-
1538
-
1539 if( prim->getParentObjectID()!=0 ){//primitive belongs to an object
-
1540
-
1541 uint ObjID = prim->getParentObjectID();
-
1542 if( doesObjectExist(ObjID) ) {
-
1543 objects.at(ObjID)->deleteChildPrimitive(UUID);
-
1544 if(getObjectPointer_private(ObjID)->getPrimitiveUUIDs().empty() )
-
1545 {
-
1546 CompoundObject* obj = objects.at(ObjID);
-
1547 delete obj;
-
1548 objects.erase(ObjID);
-
1549 }
-
1550 }
-
1551 }
+
1494}
+
+
1495
+
+
1496void Context::scalePrimitive( const std::vector<uint>& UUIDs, const helios::vec3& S ){
+
1497 for( uint UUID : UUIDs ){
+
1498 scalePrimitive(UUID,S);
+
1499 }
+
1500}
+
+
1501
+
+
1502void Context::scalePrimitiveAboutPoint( uint UUID, const helios::vec3& S, const helios::vec3 point ){
+
1503
+
1504 if( !doesPrimitiveExist(UUID) ){
+
1505 helios_runtime_error("ERROR (Context::scalePrimitiveAboutPoint): UUID of " + std::to_string(UUID) + " not found in the context.");
+
1506 }else if( S.x==1 && S.y==1 && S.z==1 ){
+
1507 return;
+
1508 }
+
1509
+
1510 getPrimitivePointer_private(UUID)->scale(S, point);
+
1511
+
1512}
+
+
1513
+
+
1514void Context::scalePrimitiveAboutPoint( const std::vector<uint>& UUIDs, const helios::vec3& S, const helios::vec3 point ){
+
1515 for( uint UUID : UUIDs ){
+
1516 scalePrimitiveAboutPoint(UUID,S,point);
+
1517 }
+
1518}
+
+
1519
+
+
1520void Context::deletePrimitive( const std::vector<uint>& UUIDs ){
+
1521 for( uint UUID : UUIDs){
+
1522 deletePrimitive( UUID );
+
1523 }
+
1524}
+
+
1525
+
+
1526void Context::deletePrimitive(uint UUID ){
+
1527
+
1528 if( primitives.find(UUID) == primitives.end() ){
+
1529 helios_runtime_error("ERROR (Context::deletePrimitive): UUID of " + std::to_string(UUID) + " not found in the context.");
+
1530 }
+
1531
+
1532 Primitive* prim = primitives.at(UUID);
+
1533
+
1534 if( prim->getParentObjectID()!=0 ){//primitive belongs to an object
+
1535
+
1536 uint ObjID = prim->getParentObjectID();
+
1537 if( doesObjectExist(ObjID) ) {
+
1538 objects.at(ObjID)->deleteChildPrimitive(UUID);
+
1539 if(getObjectPointer_private(ObjID)->getPrimitiveUUIDs().empty() )
+
1540 {
+
1541 CompoundObject* obj = objects.at(ObjID);
+
1542 delete obj;
+
1543 objects.erase(ObjID);
+
1544 }
+
1545 }
+
1546 }
+
1547
+
1548 delete prim;
+
1549 primitives.erase(UUID);
+
1550
+
1551 markGeometryDirty();
1552
-
1553 delete prim;
-
1554 primitives.erase(UUID);
-
1555
-
1556 markGeometryDirty();
-
1557
-
1558
-
1559}
-
-
-
1560std::vector<uint> Context::copyPrimitive(const std::vector<uint> &UUIDs ){
-
1561
-
1562 std::vector<uint> UUIDs_copy(UUIDs.size());
-
1563 size_t i=0;
-
1564 for( uint UUID : UUIDs){
-
1565 UUIDs_copy.at(i) = copyPrimitive( UUID );
-
1566 i++;
-
1567 }
-
1568
-
1569 return UUIDs_copy;
-
1570
-
1571}
-
-
1572
-
-
1573uint Context::copyPrimitive( uint UUID ){
-
1574
-
1575 if( primitives.find(UUID) == primitives.end() ){
-
1576 helios_runtime_error("ERROR (Context::copyPrimitive): UUID of " + std::to_string(UUID) + " not found in the context.");
-
1577 }
-
1578
-
1579 PrimitiveType type = primitives.at(UUID)->getType();
-
1580 uint parentID = primitives.at(UUID)->getParentObjectID();
-
1581 bool textureoverride = primitives.at(UUID)->isTextureColorOverridden();
-
1582
-
1583 if( type==PRIMITIVE_TYPE_PATCH ){
-
1584 Patch* p = getPatchPointer_private(UUID);
-
1585 const std::vector<vec2> &uv = p->getTextureUV();
-
1586 const vec2 &size = p->getSize();
-
1587 float solid_fraction = p->getArea()/(size.x*size.y);
-
1588 Patch* patch_new;
-
1589 if( !p->hasTexture() ){
-
1590 patch_new = (new Patch( p->getColorRGBA(), parentID, currentUUID ));
-
1591 }else{
-
1592 const std::string &texture_file = p->getTextureFile();
-
1593 if( uv.size()==4 ){
-
1594 patch_new = (new Patch( texture_file.c_str(), solid_fraction, parentID, currentUUID ));
-
1595 patch_new->setTextureUV(uv);
-
1596 }else{
-
1597 patch_new = (new Patch( texture_file.c_str(), solid_fraction, parentID, currentUUID ));
-
1598 }
-
1599 }
-
1600 float transform[16];
-
1601 p->getTransformationMatrix(transform);
-
1602 patch_new->setTransformationMatrix(transform);
-
1603 primitives[currentUUID] = patch_new;
-
1604 }else if( type==PRIMITIVE_TYPE_TRIANGLE ){
-
1605 Triangle* p = getTrianglePointer_private(UUID);
-
1606 const std::vector<vec3> &vertices = p->getVertices();
-
1607 const std::vector<vec2> &uv = p->getTextureUV();
-
1608 Triangle* tri_new;
-
1609 if( !p->hasTexture() ){
-
1610 tri_new = (new Triangle( vertices.at(0), vertices.at(1), vertices.at(2), p->getColorRGBA(), parentID, currentUUID ));
-
1611 }else{
-
1612 const std::string &texture_file = p->getTextureFile();
-
1613 float solid_fraction = p->getArea()/calculateTriangleArea( vertices.at(0), vertices.at(1), vertices.at(2) );
-
1614 tri_new = (new Triangle( vertices.at(0), vertices.at(1), vertices.at(2), texture_file.c_str(), uv, solid_fraction, parentID, currentUUID ));
-
1615 tri_new->setSolidFraction(solid_fraction);
-
1616 }
-
1617 float transform[16];
-
1618 p->getTransformationMatrix(transform);
-
1619 tri_new->setTransformationMatrix(transform);
-
1620 primitives[currentUUID] = tri_new;
-
1621 }else if( type==PRIMITIVE_TYPE_VOXEL ){
-
1622 Voxel* p = getVoxelPointer_private(UUID);
-
1623 Voxel* voxel_new;
-
1624 //if( !p->hasTexture() ){
-
1625 voxel_new = (new Voxel( p->getColorRGBA(), parentID, currentUUID ));
-
1626 //}else{
-
1627 // voxel_new = (new Voxel( p->getColorRGBA(), currentUUID ));
-
1628 /* \todo Texture-mapped voxels constructor here */
-
1629 //}
-
1630 float transform[16];
-
1631 p->getTransformationMatrix(transform);
-
1632 voxel_new->setTransformationMatrix(transform);
-
1633 primitives[currentUUID] = voxel_new;
-
1634 }
-
1635
-
1636 copyPrimitiveData( UUID, currentUUID );
-
1637
-
1638 if( textureoverride ){
-
1639 getPrimitivePointer_private(currentUUID)->overrideTextureColor();
-
1640 }
+
1553
+
1554}
+
+
+
1555std::vector<uint> Context::copyPrimitive(const std::vector<uint> &UUIDs ){
+
1556
+
1557 std::vector<uint> UUIDs_copy(UUIDs.size());
+
1558 size_t i=0;
+
1559 for( uint UUID : UUIDs){
+
1560 UUIDs_copy.at(i) = copyPrimitive( UUID );
+
1561 i++;
+
1562 }
+
1563
+
1564 return UUIDs_copy;
+
1565
+
1566}
+
+
1567
+
+
1568uint Context::copyPrimitive( uint UUID ){
+
1569
+
1570 if( primitives.find(UUID) == primitives.end() ){
+
1571 helios_runtime_error("ERROR (Context::copyPrimitive): UUID of " + std::to_string(UUID) + " not found in the context.");
+
1572 }
+
1573
+
1574 PrimitiveType type = primitives.at(UUID)->getType();
+
1575 uint parentID = primitives.at(UUID)->getParentObjectID();
+
1576 bool textureoverride = primitives.at(UUID)->isTextureColorOverridden();
+
1577
+
1578 if( type==PRIMITIVE_TYPE_PATCH ){
+
1579 Patch* p = getPatchPointer_private(UUID);
+
1580 const std::vector<vec2> &uv = p->getTextureUV();
+
1581 const vec2 &size = p->getSize();
+
1582 float solid_fraction = p->getArea()/(size.x*size.y);
+
1583 Patch* patch_new;
+
1584 if( !p->hasTexture() ){
+
1585 patch_new = (new Patch( p->getColorRGBA(), parentID, currentUUID ));
+
1586 }else{
+
1587 const std::string &texture_file = p->getTextureFile();
+
1588 if( uv.size()==4 ){
+
1589 patch_new = (new Patch( texture_file.c_str(), solid_fraction, parentID, currentUUID ));
+
1590 patch_new->setTextureUV(uv);
+
1591 }else{
+
1592 patch_new = (new Patch( texture_file.c_str(), solid_fraction, parentID, currentUUID ));
+
1593 }
+
1594 }
+
1595 float transform[16];
+
1596 p->getTransformationMatrix(transform);
+
1597 patch_new->setTransformationMatrix(transform);
+
1598 primitives[currentUUID] = patch_new;
+
1599 }else if( type==PRIMITIVE_TYPE_TRIANGLE ){
+
1600 Triangle* p = getTrianglePointer_private(UUID);
+
1601 const std::vector<vec3> &vertices = p->getVertices();
+
1602 const std::vector<vec2> &uv = p->getTextureUV();
+
1603 Triangle* tri_new;
+
1604 if( !p->hasTexture() ){
+
1605 tri_new = (new Triangle( vertices.at(0), vertices.at(1), vertices.at(2), p->getColorRGBA(), parentID, currentUUID ));
+
1606 }else{
+
1607 const std::string &texture_file = p->getTextureFile();
+
1608 float solid_fraction = p->getArea()/calculateTriangleArea( vertices.at(0), vertices.at(1), vertices.at(2) );
+
1609 tri_new = (new Triangle( vertices.at(0), vertices.at(1), vertices.at(2), texture_file.c_str(), uv, solid_fraction, parentID, currentUUID ));
+
1610 tri_new->setSolidFraction(solid_fraction);
+
1611 }
+
1612 float transform[16];
+
1613 p->getTransformationMatrix(transform);
+
1614 tri_new->setTransformationMatrix(transform);
+
1615 primitives[currentUUID] = tri_new;
+
1616 }else if( type==PRIMITIVE_TYPE_VOXEL ){
+
1617 Voxel* p = getVoxelPointer_private(UUID);
+
1618 Voxel* voxel_new;
+
1619 //if( !p->hasTexture() ){
+
1620 voxel_new = (new Voxel( p->getColorRGBA(), parentID, currentUUID ));
+
1621 //}else{
+
1622 // voxel_new = (new Voxel( p->getColorRGBA(), currentUUID ));
+
1623 /* \todo Texture-mapped voxels constructor here */
+
1624 //}
+
1625 float transform[16];
+
1626 p->getTransformationMatrix(transform);
+
1627 voxel_new->setTransformationMatrix(transform);
+
1628 primitives[currentUUID] = voxel_new;
+
1629 }
+
1630
+
1631 copyPrimitiveData( UUID, currentUUID );
+
1632
+
1633 if( textureoverride ){
+
1634 getPrimitivePointer_private(currentUUID)->overrideTextureColor();
+
1635 }
+
1636
+
1637 markGeometryDirty();
+
1638 currentUUID++;
+
1639 return currentUUID-1;
+
1640}
+
1641
-
1642 markGeometryDirty();
-
1643 currentUUID++;
-
1644 return currentUUID-1;
-
1645}
-
-
1646
-
1647Primitive* Context::getPrimitivePointer_private( uint UUID ) const{
-
1648 if( primitives.find(UUID) == primitives.end() ){
-
1649 helios_runtime_error("ERROR (Context::getPrimitivePointer_private): UUID of " + std::to_string(UUID) + " does not exist in the Context.");
-
1650 }
-
1651 return primitives.at(UUID);
-
1652}
-
1653
-
-
1654bool Context::doesPrimitiveExist(uint UUID ) const{
-
1655 return primitives.find(UUID) != primitives.end();
-
1656}
-
-
1657
-
-
1658bool Context::doesPrimitiveExist( const std::vector<uint> &UUIDs ) const{
-
1659 if( UUIDs.empty() ){
-
1660 return false;
+
1642Primitive* Context::getPrimitivePointer_private( uint UUID ) const{
+
1643 if( primitives.find(UUID) == primitives.end() ){
+
1644 helios_runtime_error("ERROR (Context::getPrimitivePointer_private): UUID of " + std::to_string(UUID) + " does not exist in the Context.");
+
1645 }
+
1646 return primitives.at(UUID);
+
1647}
+
1648
+
+
1649bool Context::doesPrimitiveExist(uint UUID ) const{
+
1650 return primitives.find(UUID) != primitives.end();
+
1651}
+
+
1652
+
+
1653bool Context::doesPrimitiveExist( const std::vector<uint> &UUIDs ) const{
+
1654 if( UUIDs.empty() ){
+
1655 return false;
+
1656 }
+
1657 for( uint UUID : UUIDs ){
+
1658 if( !doesPrimitiveExist(UUID) ){
+
1659 return false;
+
1660 }
1661 }
-
1662 for( uint UUID : UUIDs ){
-
1663 if( !doesPrimitiveExist(UUID) ){
-
1664 return false;
-
1665 }
-
1666 }
-
1667 return true;
-
1668}
-
-
1669
-
1670Patch* Context::getPatchPointer_private(uint UUID ) const{
-
1671 if( primitives.find(UUID) == primitives.end() ){
-
1672 helios_runtime_error("ERROR (Context::getPatchPointer_private): UUID of " + std::to_string(UUID) + " does not exist in the Context.");
-
1673 }else if( primitives.at(UUID)->getType()!=PRIMITIVE_TYPE_PATCH ){
-
1674 helios_runtime_error("ERROR (Context::getPatchPointer_private): UUID of " + std::to_string(UUID) + " is not a patch.");
-
1675 }
-
1676 return dynamic_cast<Patch*>(primitives.at(UUID));
-
1677}
-
1678
-
-
1679helios::vec2 Context::getPatchSize( uint UUID ) const{
-
1680 if( primitives.find(UUID) == primitives.end() ){
-
1681 helios_runtime_error("ERROR (Context::getPatchSize): UUID of " + std::to_string(UUID) + " does not exist in the Context.");
-
1682 }else if( primitives.at(UUID)->getType()!=PRIMITIVE_TYPE_PATCH ){
-
1683 helios_runtime_error("ERROR (Context::getPatchSize): UUID of " + std::to_string(UUID) + " is not a patch.");
-
1684 }
-
1685 return dynamic_cast<Patch*>(primitives.at(UUID))->getSize();
-
1686}
-
-
1687
-
-
1688helios::vec3 Context::getPatchCenter( uint UUID ) const{
-
1689 if( primitives.find(UUID) == primitives.end() ){
-
1690 helios_runtime_error("ERROR (Context::getPatchCenter): UUID of " + std::to_string(UUID) + " does not exist in the Context.");
-
1691 }else if( primitives.at(UUID)->getType()!=PRIMITIVE_TYPE_PATCH ){
-
1692 helios_runtime_error("ERROR (Context::getPatchCenter): UUID of " + std::to_string(UUID) + " is not a patch.");
-
1693 }
-
1694 return dynamic_cast<Patch*>(primitives.at(UUID))->getCenter();
-
1695}
-
-
1696
-
1697Triangle* Context::getTrianglePointer_private(uint UUID ) const{
-
1698 if( primitives.find(UUID) == primitives.end() ){
-
1699 helios_runtime_error("ERROR (Context::getTrianglePointer_private): UUID of " + std::to_string(UUID) + " does not exist in the Context.");
-
1700 }else if( primitives.at(UUID)->getType()!=PRIMITIVE_TYPE_TRIANGLE ){
-
1701 helios_runtime_error("ERROR (Context::getTrianglePointer_private): UUID of " + std::to_string(UUID) + " is not a triangle.");
-
1702 }
-
1703 return dynamic_cast<Triangle*>(primitives.at(UUID));
-
1704}
-
1705
-
-
1706helios::vec3 Context::getTriangleVertex( uint UUID, uint number ) const{
-
1707 if( primitives.find(UUID) == primitives.end() ){
-
1708 helios_runtime_error("ERROR (Context::getTriangleVertex): UUID of " + std::to_string(UUID) + " does not exist in the Context.");
-
1709 }else if( primitives.at(UUID)->getType()!=PRIMITIVE_TYPE_TRIANGLE ){
-
1710 helios_runtime_error("ERROR (Context::getTriangleVertex): UUID of " + std::to_string(UUID) + " is not a triangle.");
-
1711 }else if( number>2 ){
-
1712 helios_runtime_error("ERROR (Context::getTriangleVertex): Vertex index must be one of 0, 1, or 2.");
-
1713 }
-
1714 return dynamic_cast<Triangle*>(primitives.at(UUID))->getVertex( number );
-
1715}
-
-
1716
-
-
1717void Context::setTriangleVertices( uint UUID, const helios::vec3& vertex0, const helios::vec3& vertex1, const helios::vec3& vertex2 ) {
-
1718
-
1719 if( primitives.find(UUID) == primitives.end() ) {
-
1720 helios_runtime_error("ERROR (Context::setTriangleVertices): UUID of " + std::to_string(UUID) + " does not exist in the Context.");
-
1721 }
-
1722
-
1723 dynamic_cast<Triangle*>(primitives.at(UUID))->setVertices(vertex0, vertex1, vertex2);
-
1724
-
1725}
-
-
1726
-
1727Voxel* Context::getVoxelPointer_private(uint UUID ) const{
-
1728 if( primitives.find(UUID) == primitives.end() ){
-
1729 helios_runtime_error("ERROR (Context::getVoxelPointer): UUID of " + std::to_string(UUID) + " does not exist in the Context.");
-
1730 }else if( primitives.at(UUID)->getType()!=PRIMITIVE_TYPE_VOXEL ){
-
1731 helios_runtime_error("ERROR (Context::getVoxelPointer): UUID of " + std::to_string(UUID) + " is not a voxel.");
-
1732 }
-
1733 return dynamic_cast<Voxel*>(primitives.at(UUID));
-
1734}
-
1735
-
-
1736helios::vec3 Context::getVoxelSize( uint UUID ) const{
-
1737 if( primitives.find(UUID) == primitives.end() ){
-
1738 helios_runtime_error("ERROR (Context::getVoxelSize): UUID of " + std::to_string(UUID) + " does not exist in the Context.");
-
1739 }else if( primitives.at(UUID)->getType()!=PRIMITIVE_TYPE_VOXEL ){
-
1740 helios_runtime_error("ERROR (Context::getVoxelSize): UUID of " + std::to_string(UUID) + " is not a patch.");
-
1741 }
-
1742 return dynamic_cast<Voxel*>(primitives.at(UUID))->getSize();
-
1743}
-
-
1744
-
-
1745helios::vec3 Context::getVoxelCenter( uint UUID ) const{
-
1746 if( primitives.find(UUID) == primitives.end() ){
-
1747 helios_runtime_error("ERROR (Context::getVoxelCenter): UUID of " + std::to_string(UUID) + " does not exist in the Context.");
-
1748 }else if( primitives.at(UUID)->getType()!=PRIMITIVE_TYPE_VOXEL ){
-
1749 helios_runtime_error("ERROR (Context::getVoxelCenter): UUID of " + std::to_string(UUID) + " is not a patch.");
-
1750 }
-
1751 return dynamic_cast<Voxel*>(primitives.at(UUID))->getCenter();
-
1752}
-
-
1753
-
-
1754uint Context::getPrimitiveCount() const{
-
1755 return primitives.size();
-
1756}
-
-
1757
-
-
1758std::vector<uint> Context::getAllUUIDs() const{
-
1759 std::vector<uint> UUIDs(primitives.size());
-
1760 size_t i=0;
-
1761 for( auto primitive : primitives){
-
1762 if( primitive.second->ishidden ){
-
1763 continue;
-
1764 }
-
1765 UUIDs.at(i) = primitive.first;
-
1766 i++;
-
1767 }
-
1768 UUIDs.resize(i);
-
1769 return UUIDs;
-
1770}
-
-
1771
-
-
1772void Context::hidePrimitive( const std::vector<uint> &UUIDs ){
-
1773 for( uint UUID : UUIDs ){
-
1774 if( !doesPrimitiveExist(UUID) ){
-
1775 helios_runtime_error("ERROR (Context::hidePrimitive): UUID of " + std::to_string(UUID) + " does not exist in the Context.");
-
1776 }
-
1777 primitives.at(UUID)->ishidden = true;
-
1778 }
-
1779}
-
-
1780
-
-
1781bool Context::isPrimitiveHidden(uint UUID) const {
-
1782 if( !doesPrimitiveExist(UUID) ){
-
1783 helios_runtime_error("ERROR (Context::isPrimitiveHidden): UUID of " + std::to_string(UUID) + " does not exist in the Context.");
-
1784 }
-
1785 return primitives.at(UUID)->ishidden;
-
1786}
-
-
1787
-
-
1788void Context::cleanDeletedUUIDs( std::vector<uint> &UUIDs ) const {
-
1789 for (int i = UUIDs.size() - 1; i >= 0; i--) {
-
1790 if (!doesPrimitiveExist(UUIDs.at(i))) {
-
1791 UUIDs.erase(UUIDs.begin() + i);
-
1792 }
-
1793 }
-
1794}
-
-
1795
-
-
1796void Context::cleanDeletedUUIDs( std::vector<std::vector<uint>> &UUIDs ) const{
-
1797 for( int j=UUIDs.size()-1; j>=0; j-- ){
-
1798 for( int i=UUIDs.at(j).size()-1; i>=0; i-- ){
-
1799 if( !doesPrimitiveExist(UUIDs.at(j).at(i)) ){
-
1800 UUIDs.at(j).erase( UUIDs.at(j).begin()+i );
-
1801 }
-
1802 }
-
1803 }
-
1804}
-
-
1805
-
-
1806void Context::cleanDeletedUUIDs( std::vector<std::vector<std::vector<uint>>> &UUIDs ) const{
-
1807 for( int k=UUIDs.size()-1; k>=0; k-- ) {
-
1808 for (int j = UUIDs.at(k).size() - 1; j >= 0; j--) {
-
1809 for (int i = UUIDs.at(k).at(j).size() - 1; i >= 0; i--) {
-
1810 if (!doesPrimitiveExist(UUIDs.at(k).at(j).at(i))) {
-
1811 UUIDs.at(k).at(j).erase(UUIDs.at(k).at(j).begin() + i);
-
1812 }
-
1813 }
-
1814 }
-
1815 }
-
1816}
-
-
1817
-
-
1818void Context::addTimeseriesData(const char* label, float value, const Date &date, const Time &time ){
-
1819
-
1820 //floating point value corresponding to date and time
-
1821 double date_value = floor(date.year*366.25) + date.JulianDay();
-
1822 date_value += double(time.hour)/24. + double(time.minute)/1440. + double(time.second)/86400.;
-
1823
-
1824 //Check if data label already exists
-
1825 if( timeseries_data.find(label) == timeseries_data.end() ){ //does not exist
-
1826 timeseries_data[label].push_back( value );
-
1827 timeseries_datevalue[label].push_back( date_value );
-
1828 return;
-
1829 }else{ //exists
+
1662 return true;
+
1663}
+
+
1664
+
1665Patch* Context::getPatchPointer_private(uint UUID ) const{
+
1666 if( primitives.find(UUID) == primitives.end() ){
+
1667 helios_runtime_error("ERROR (Context::getPatchPointer_private): UUID of " + std::to_string(UUID) + " does not exist in the Context.");
+
1668 }else if( primitives.at(UUID)->getType()!=PRIMITIVE_TYPE_PATCH ){
+
1669 helios_runtime_error("ERROR (Context::getPatchPointer_private): UUID of " + std::to_string(UUID) + " is not a patch.");
+
1670 }
+
1671 return dynamic_cast<Patch*>(primitives.at(UUID));
+
1672}
+
1673
+
+
1674helios::vec2 Context::getPatchSize( uint UUID ) const{
+
1675 if( primitives.find(UUID) == primitives.end() ){
+
1676 helios_runtime_error("ERROR (Context::getPatchSize): UUID of " + std::to_string(UUID) + " does not exist in the Context.");
+
1677 }else if( primitives.at(UUID)->getType()!=PRIMITIVE_TYPE_PATCH ){
+
1678 helios_runtime_error("ERROR (Context::getPatchSize): UUID of " + std::to_string(UUID) + " is not a patch.");
+
1679 }
+
1680 return dynamic_cast<Patch*>(primitives.at(UUID))->getSize();
+
1681}
+
+
1682
+
+
1683helios::vec3 Context::getPatchCenter( uint UUID ) const{
+
1684 if( primitives.find(UUID) == primitives.end() ){
+
1685 helios_runtime_error("ERROR (Context::getPatchCenter): UUID of " + std::to_string(UUID) + " does not exist in the Context.");
+
1686 }else if( primitives.at(UUID)->getType()!=PRIMITIVE_TYPE_PATCH ){
+
1687 helios_runtime_error("ERROR (Context::getPatchCenter): UUID of " + std::to_string(UUID) + " is not a patch.");
+
1688 }
+
1689 return dynamic_cast<Patch*>(primitives.at(UUID))->getCenter();
+
1690}
+
+
1691
+
1692Triangle* Context::getTrianglePointer_private(uint UUID ) const{
+
1693 if( primitives.find(UUID) == primitives.end() ){
+
1694 helios_runtime_error("ERROR (Context::getTrianglePointer_private): UUID of " + std::to_string(UUID) + " does not exist in the Context.");
+
1695 }else if( primitives.at(UUID)->getType()!=PRIMITIVE_TYPE_TRIANGLE ){
+
1696 helios_runtime_error("ERROR (Context::getTrianglePointer_private): UUID of " + std::to_string(UUID) + " is not a triangle.");
+
1697 }
+
1698 return dynamic_cast<Triangle*>(primitives.at(UUID));
+
1699}
+
1700
+
+
1701helios::vec3 Context::getTriangleVertex( uint UUID, uint number ) const{
+
1702 if( primitives.find(UUID) == primitives.end() ){
+
1703 helios_runtime_error("ERROR (Context::getTriangleVertex): UUID of " + std::to_string(UUID) + " does not exist in the Context.");
+
1704 }else if( primitives.at(UUID)->getType()!=PRIMITIVE_TYPE_TRIANGLE ){
+
1705 helios_runtime_error("ERROR (Context::getTriangleVertex): UUID of " + std::to_string(UUID) + " is not a triangle.");
+
1706 }else if( number>2 ){
+
1707 helios_runtime_error("ERROR (Context::getTriangleVertex): Vertex index must be one of 0, 1, or 2.");
+
1708 }
+
1709 return dynamic_cast<Triangle*>(primitives.at(UUID))->getVertex( number );
+
1710}
+
+
1711
+
+
1712void Context::setTriangleVertices( uint UUID, const helios::vec3& vertex0, const helios::vec3& vertex1, const helios::vec3& vertex2 ) {
+
1713
+
1714 if( primitives.find(UUID) == primitives.end() ) {
+
1715 helios_runtime_error("ERROR (Context::setTriangleVertices): UUID of " + std::to_string(UUID) + " does not exist in the Context.");
+
1716 }
+
1717
+
1718 dynamic_cast<Triangle*>(primitives.at(UUID))->setVertices(vertex0, vertex1, vertex2);
+
1719
+
1720}
+
+
1721
+
1722Voxel* Context::getVoxelPointer_private(uint UUID ) const{
+
1723 if( primitives.find(UUID) == primitives.end() ){
+
1724 helios_runtime_error("ERROR (Context::getVoxelPointer): UUID of " + std::to_string(UUID) + " does not exist in the Context.");
+
1725 }else if( primitives.at(UUID)->getType()!=PRIMITIVE_TYPE_VOXEL ){
+
1726 helios_runtime_error("ERROR (Context::getVoxelPointer): UUID of " + std::to_string(UUID) + " is not a voxel.");
+
1727 }
+
1728 return dynamic_cast<Voxel*>(primitives.at(UUID));
+
1729}
+
1730
+
+
1731helios::vec3 Context::getVoxelSize( uint UUID ) const{
+
1732 if( primitives.find(UUID) == primitives.end() ){
+
1733 helios_runtime_error("ERROR (Context::getVoxelSize): UUID of " + std::to_string(UUID) + " does not exist in the Context.");
+
1734 }else if( primitives.at(UUID)->getType()!=PRIMITIVE_TYPE_VOXEL ){
+
1735 helios_runtime_error("ERROR (Context::getVoxelSize): UUID of " + std::to_string(UUID) + " is not a patch.");
+
1736 }
+
1737 return dynamic_cast<Voxel*>(primitives.at(UUID))->getSize();
+
1738}
+
+
1739
+
+
1740helios::vec3 Context::getVoxelCenter( uint UUID ) const{
+
1741 if( primitives.find(UUID) == primitives.end() ){
+
1742 helios_runtime_error("ERROR (Context::getVoxelCenter): UUID of " + std::to_string(UUID) + " does not exist in the Context.");
+
1743 }else if( primitives.at(UUID)->getType()!=PRIMITIVE_TYPE_VOXEL ){
+
1744 helios_runtime_error("ERROR (Context::getVoxelCenter): UUID of " + std::to_string(UUID) + " is not a patch.");
+
1745 }
+
1746 return dynamic_cast<Voxel*>(primitives.at(UUID))->getCenter();
+
1747}
+
+
1748
+
+
1749uint Context::getPrimitiveCount() const{
+
1750 return primitives.size();
+
1751}
+
+
1752
+
+
1753std::vector<uint> Context::getAllUUIDs() const{
+
1754 std::vector<uint> UUIDs(primitives.size());
+
1755 size_t i=0;
+
1756 for( auto primitive : primitives){
+
1757 if( primitive.second->ishidden ){
+
1758 continue;
+
1759 }
+
1760 UUIDs.at(i) = primitive.first;
+
1761 i++;
+
1762 }
+
1763 UUIDs.resize(i);
+
1764 return UUIDs;
+
1765}
+
+
1766
+
+
1767void Context::hidePrimitive( const std::vector<uint> &UUIDs ){
+
1768 for( uint UUID : UUIDs ){
+
1769 if( !doesPrimitiveExist(UUID) ){
+
1770 helios_runtime_error("ERROR (Context::hidePrimitive): UUID of " + std::to_string(UUID) + " does not exist in the Context.");
+
1771 }
+
1772 primitives.at(UUID)->ishidden = true;
+
1773 }
+
1774}
+
+
1775
+
+
1776bool Context::isPrimitiveHidden(uint UUID) const {
+
1777 if( !doesPrimitiveExist(UUID) ){
+
1778 helios_runtime_error("ERROR (Context::isPrimitiveHidden): UUID of " + std::to_string(UUID) + " does not exist in the Context.");
+
1779 }
+
1780 return primitives.at(UUID)->ishidden;
+
1781}
+
+
1782
+
+
1783void Context::cleanDeletedUUIDs( std::vector<uint> &UUIDs ) const {
+
1784 for (int i = UUIDs.size() - 1; i >= 0; i--) {
+
1785 if (!doesPrimitiveExist(UUIDs.at(i))) {
+
1786 UUIDs.erase(UUIDs.begin() + i);
+
1787 }
+
1788 }
+
1789}
+
+
1790
+
+
1791void Context::cleanDeletedUUIDs( std::vector<std::vector<uint>> &UUIDs ) const{
+
1792 for( int j=UUIDs.size()-1; j>=0; j-- ){
+
1793 for( int i=UUIDs.at(j).size()-1; i>=0; i-- ){
+
1794 if( !doesPrimitiveExist(UUIDs.at(j).at(i)) ){
+
1795 UUIDs.at(j).erase( UUIDs.at(j).begin()+i );
+
1796 }
+
1797 }
+
1798 }
+
1799}
+
+
1800
+
+
1801void Context::cleanDeletedUUIDs( std::vector<std::vector<std::vector<uint>>> &UUIDs ) const{
+
1802 for( int k=UUIDs.size()-1; k>=0; k-- ) {
+
1803 for (int j = UUIDs.at(k).size() - 1; j >= 0; j--) {
+
1804 for (int i = UUIDs.at(k).at(j).size() - 1; i >= 0; i--) {
+
1805 if (!doesPrimitiveExist(UUIDs.at(k).at(j).at(i))) {
+
1806 UUIDs.at(k).at(j).erase(UUIDs.at(k).at(j).begin() + i);
+
1807 }
+
1808 }
+
1809 }
+
1810 }
+
1811}
+
+
1812
+
+
1813void Context::addTimeseriesData(const char* label, float value, const Date &date, const Time &time ){
+
1814
+
1815 //floating point value corresponding to date and time
+
1816 double date_value = floor(date.year*366.25) + date.JulianDay();
+
1817 date_value += double(time.hour)/24. + double(time.minute)/1440. + double(time.second)/86400.;
+
1818
+
1819 //Check if data label already exists
+
1820 if( timeseries_data.find(label) == timeseries_data.end() ){ //does not exist
+
1821 timeseries_data[label].push_back( value );
+
1822 timeseries_datevalue[label].push_back( date_value );
+
1823 return;
+
1824 }else{ //exists
+
1825
+
1826 uint N = getTimeseriesLength(label);
+
1827
+
1828 auto it_data = timeseries_data[label].begin();
+
1829 auto it_datevalue = timeseries_datevalue[label].begin();
1830
-
1831 uint N = getTimeseriesLength(label);
+
1831 if( N==1 ){
1832
-
1833 auto it_data = timeseries_data[label].begin();
-
1834 auto it_datevalue = timeseries_datevalue[label].begin();
-
1835
-
1836 if( N==1 ){
-
1837
-
1838 if( date_value<timeseries_datevalue[label].front() ){
-
1839 timeseries_data[label].insert(it_data, value);
-
1840 timeseries_datevalue[label].insert(it_datevalue, date_value);
-
1841 return;
-
1842 }else{
-
1843 timeseries_data[label].insert(it_data+1, value);
-
1844 timeseries_datevalue[label].insert(it_datevalue+1, date_value);
-
1845 return;
-
1846 }
-
1847
-
1848 }else{
-
1849
-
1850 if( date_value<timeseries_datevalue[label].front() ){ //check if data should be inserted at beginning of timeseries
-
1851 timeseries_data[label].insert(it_data, value);
-
1852 timeseries_datevalue[label].insert(it_datevalue, date_value);
-
1853 return;
-
1854 }else if( date_value>timeseries_datevalue[label].back() ){ //check if data should be inserted at end of timeseries
-
1855 timeseries_data[label].push_back( value);
-
1856 timeseries_datevalue[label].push_back( date_value);
-
1857 return;
-
1858 }
-
1859
-
1860 //data should be inserted somewhere in the middle of timeseries
-
1861 for( uint t=0; t<N-1; t++ ){
-
1862 if( date_value==timeseries_datevalue[label].at(t) ){
-
1863 std::cerr << "WARNING (Context::addTimeseriesData): Skipping duplicate timeseries date/time." << std::endl;
-
1864 continue;
+
1833 if( date_value<timeseries_datevalue[label].front() ){
+
1834 timeseries_data[label].insert(it_data, value);
+
1835 timeseries_datevalue[label].insert(it_datevalue, date_value);
+
1836 return;
+
1837 }else{
+
1838 timeseries_data[label].insert(it_data+1, value);
+
1839 timeseries_datevalue[label].insert(it_datevalue+1, date_value);
+
1840 return;
+
1841 }
+
1842
+
1843 }else{
+
1844
+
1845 if( date_value<timeseries_datevalue[label].front() ){ //check if data should be inserted at beginning of timeseries
+
1846 timeseries_data[label].insert(it_data, value);
+
1847 timeseries_datevalue[label].insert(it_datevalue, date_value);
+
1848 return;
+
1849 }else if( date_value>timeseries_datevalue[label].back() ){ //check if data should be inserted at end of timeseries
+
1850 timeseries_data[label].push_back( value);
+
1851 timeseries_datevalue[label].push_back( date_value);
+
1852 return;
+
1853 }
+
1854
+
1855 //data should be inserted somewhere in the middle of timeseries
+
1856 for( uint t=0; t<N-1; t++ ){
+
1857 if( date_value==timeseries_datevalue[label].at(t) ){
+
1858 std::cerr << "WARNING (Context::addTimeseriesData): Skipping duplicate timeseries date/time." << std::endl;
+
1859 continue;
+
1860 }
+
1861 if( date_value>timeseries_datevalue[label].at(t) && date_value<timeseries_datevalue[label].at(t+1) ){
+
1862 timeseries_data[label].insert(it_data+t+1, value);
+
1863 timeseries_datevalue[label].insert(it_datevalue+t+1, date_value);
+
1864 return;
1865 }
-
1866 if( date_value>timeseries_datevalue[label].at(t) && date_value<timeseries_datevalue[label].at(t+1) ){
-
1867 timeseries_data[label].insert(it_data+t+1, value);
-
1868 timeseries_datevalue[label].insert(it_datevalue+t+1, date_value);
-
1869 return;
-
1870 }
-
1871 }
-
1872
-
1873 }
-
1874
-
1875 }
-
1876
-
1877 helios_runtime_error("ERROR (Context::addTimeseriesData): Failed to insert timeseries data for unknown reason.");
-
1878
-
1879}
-
-
1880
-
-
1881void Context::setCurrentTimeseriesPoint(const char* label, uint index ){
-
1882 if( timeseries_data.find(label) == timeseries_data.end() ){ //does not exist
-
1883 helios_runtime_error("ERROR (setCurrentTimeseriesPoint): Timeseries variable `" + std::string(label) + "' does not exist.");
-
1884 }
-
1885 setDate( queryTimeseriesDate( label, index ) );
-
1886 setTime( queryTimeseriesTime( label, index ) );
-
1887}
-
+
1866 }
+
1867
+
1868 }
+
1869
+
1870 }
+
1871
+
1872 helios_runtime_error("ERROR (Context::addTimeseriesData): Failed to insert timeseries data for unknown reason.");
+
1873
+
1874}
+
+
1875
+
+
1876void Context::setCurrentTimeseriesPoint(const char* label, uint index ){
+
1877 if( timeseries_data.find(label) == timeseries_data.end() ){ //does not exist
+
1878 helios_runtime_error("ERROR (setCurrentTimeseriesPoint): Timeseries variable `" + std::string(label) + "' does not exist.");
+
1879 }
+
1880 setDate( queryTimeseriesDate( label, index ) );
+
1881 setTime( queryTimeseriesTime( label, index ) );
+
1882}
+
+
1883
+
+
1884float Context::queryTimeseriesData(const char* label, const Date &date, const Time &time ) const{
+
1885 if( timeseries_data.find(label) == timeseries_data.end() ){ //does not exist
+
1886 helios_runtime_error("ERROR (setCurrentTimeseriesData): Timeseries variable `" + std::string(label) + "' does not exist.");
+
1887 }
1888
-
-
1889float Context::queryTimeseriesData(const char* label, const Date &date, const Time &time ) const{
-
1890 if( timeseries_data.find(label) == timeseries_data.end() ){ //does not exist
-
1891 helios_runtime_error("ERROR (setCurrentTimeseriesData): Timeseries variable `" + std::string(label) + "' does not exist.");
-
1892 }
-
1893
-
1894 double date_value = floor(date.year*366.25) + date.JulianDay();
-
1895 date_value += double(time.hour)/24. + double(time.minute)/1440. + double(time.second)/86400.;
-
1896
-
1897 double tmin = timeseries_datevalue.at(label).front();
-
1898 double tmax = timeseries_datevalue.at(label).back();
-
1899
-
1900 if( date_value<tmin ){
-
1901 std::cerr << "WARNING (queryTimeseriesData): Timeseries date and time is outside of the range of the data. Using the earliest data point in the timeseries." << std::endl;
-
1902 return timeseries_data.at(label).front();
-
1903 }else if( date_value>tmax ){
-
1904 std::cerr << "WARNING (queryTimeseriesData): Timeseries date and time is outside of the range of the data. Using the latest data point in the timeseries." << std::endl;
-
1905 return timeseries_data.at(label).back();
-
1906 }
-
1907
-
1908 if( timeseries_datevalue.at(label).empty() ){
-
1909 std::cerr << "WARNING (queryTimeseriesData): timeseries " << label << " does not contain any data." << std::endl;
-
1910 return 0;
-
1911 }else if( timeseries_datevalue.at(label).size() == 1 ){
-
1912 return timeseries_data.at(label).front();
-
1913 }else{
-
1914 int i;
-
1915 bool success=false;
-
1916 for( i=0; i<timeseries_data.at(label).size()-1; i++ ){
-
1917 if( date_value>=timeseries_datevalue.at(label).at(i) && date_value<=timeseries_datevalue.at(label).at(i+1) ){
-
1918 success = true;
-
1919 break;
-
1920 }
-
1921 }
-
1922
-
1923 if(!success){
-
1924 helios_runtime_error("ERROR (queryTimeseriesData): Failed to query timeseries data for unknown reason.");
-
1925 }
-
1926
-
1927 double xminus = timeseries_data.at(label).at(i);
-
1928 double xplus = timeseries_data.at(label).at(i+1);
+
1889 double date_value = floor(date.year*366.25) + date.JulianDay();
+
1890 date_value += double(time.hour)/24. + double(time.minute)/1440. + double(time.second)/86400.;
+
1891
+
1892 double tmin = timeseries_datevalue.at(label).front();
+
1893 double tmax = timeseries_datevalue.at(label).back();
+
1894
+
1895 if( date_value<tmin ){
+
1896 std::cerr << "WARNING (queryTimeseriesData): Timeseries date and time is outside of the range of the data. Using the earliest data point in the timeseries." << std::endl;
+
1897 return timeseries_data.at(label).front();
+
1898 }else if( date_value>tmax ){
+
1899 std::cerr << "WARNING (queryTimeseriesData): Timeseries date and time is outside of the range of the data. Using the latest data point in the timeseries." << std::endl;
+
1900 return timeseries_data.at(label).back();
+
1901 }
+
1902
+
1903 if( timeseries_datevalue.at(label).empty() ){
+
1904 std::cerr << "WARNING (queryTimeseriesData): timeseries " << label << " does not contain any data." << std::endl;
+
1905 return 0;
+
1906 }else if( timeseries_datevalue.at(label).size() == 1 ){
+
1907 return timeseries_data.at(label).front();
+
1908 }else{
+
1909 int i;
+
1910 bool success=false;
+
1911 for( i=0; i<timeseries_data.at(label).size()-1; i++ ){
+
1912 if( date_value>=timeseries_datevalue.at(label).at(i) && date_value<=timeseries_datevalue.at(label).at(i+1) ){
+
1913 success = true;
+
1914 break;
+
1915 }
+
1916 }
+
1917
+
1918 if(!success){
+
1919 helios_runtime_error("ERROR (queryTimeseriesData): Failed to query timeseries data for unknown reason.");
+
1920 }
+
1921
+
1922 double xminus = timeseries_data.at(label).at(i);
+
1923 double xplus = timeseries_data.at(label).at(i+1);
+
1924
+
1925 double tminus = timeseries_datevalue.at(label).at(i);
+
1926 double tplus = timeseries_datevalue.at(label).at(i+1);
+
1927
+
1928 return float(xminus + (xplus-xminus)*(date_value-tminus)/(tplus-tminus));
1929
-
1930 double tminus = timeseries_datevalue.at(label).at(i);
-
1931 double tplus = timeseries_datevalue.at(label).at(i+1);
-
1932
-
1933 return float(xminus + (xplus-xminus)*(date_value-tminus)/(tplus-tminus));
-
1934
-
1935 }
-
1936
-
1937}
-
-
1938
-
-
1939float Context::queryTimeseriesData( const char* label ) const{
-
1940 return queryTimeseriesData( label, sim_date, sim_time );
-
1941}
-
-
1942
-
-
1943float Context::queryTimeseriesData( const char* label, const uint index ) const{
-
1944
-
1945 if( timeseries_data.find(label) == timeseries_data.end() ){ //does not exist
-
1946 helios_runtime_error("ERROR( Context::getTimeseriesData): Timeseries variable " + std::string(label) + " does not exist.");
-
1947 }
-
1948
-
1949 return timeseries_data.at(label).at(index);
-
1950
-
1951}
-
-
1952
-
-
1953Time Context::queryTimeseriesTime( const char* label, const uint index ) const{
-
1954
-
1955 if( timeseries_data.find(label) == timeseries_data.end() ){ //does not exist
-
1956 helios_runtime_error("ERROR( Context::getTimeseriesTime): Timeseries variable " + std::string(label) + " does not exist.");
-
1957 }
+
1930 }
+
1931
+
1932}
+
+
1933
+
+
1934float Context::queryTimeseriesData( const char* label ) const{
+
1935 return queryTimeseriesData( label, sim_date, sim_time );
+
1936}
+
+
1937
+
+
1938float Context::queryTimeseriesData( const char* label, const uint index ) const{
+
1939
+
1940 if( timeseries_data.find(label) == timeseries_data.end() ){ //does not exist
+
1941 helios_runtime_error("ERROR( Context::getTimeseriesData): Timeseries variable " + std::string(label) + " does not exist.");
+
1942 }
+
1943
+
1944 return timeseries_data.at(label).at(index);
+
1945
+
1946}
+
+
1947
+
+
1948Time Context::queryTimeseriesTime( const char* label, const uint index ) const{
+
1949
+
1950 if( timeseries_data.find(label) == timeseries_data.end() ){ //does not exist
+
1951 helios_runtime_error("ERROR( Context::getTimeseriesTime): Timeseries variable " + std::string(label) + " does not exist.");
+
1952 }
+
1953
+
1954 double dateval = timeseries_datevalue.at(label).at(index);
+
1955
+
1956 int year = floor(floor(dateval)/366.25);
+
1957 assert( year>1000 && year<10000 );
1958
-
1959 double dateval = timeseries_datevalue.at(label).at(index);
-
1960
-
1961 int year = floor(floor(dateval)/366.25);
-
1962 assert( year>1000 && year<10000 );
-
1963
-
1964 int JD = floor(dateval-floor(double(year)*366.25));
-
1965 assert( JD>0 && JD<367 );
-
1966
-
1967 int hour = floor((dateval-floor(dateval))*24.);
-
1968 int minute = floor( ((dateval-floor(dateval))*24.-double(hour))*60. );
-
1969 int second = (int)lround( ( ( ( dateval - floor(dateval) )*24. - double(hour))*60. - double(minute) )*60.);
+
1959 int JD = floor(dateval-floor(double(year)*366.25));
+
1960 assert( JD>0 && JD<367 );
+
1961
+
1962 int hour = floor((dateval-floor(dateval))*24.);
+
1963 int minute = floor( ((dateval-floor(dateval))*24.-double(hour))*60. );
+
1964 int second = (int)lround( ( ( ( dateval - floor(dateval) )*24. - double(hour))*60. - double(minute) )*60.);
+
1965
+
1966 if( second==60 ){
+
1967 second = 0;
+
1968 minute ++;
+
1969 }
1970
-
1971 if( second==60 ){
-
1972 second = 0;
-
1973 minute ++;
+
1971 if( minute==60 ){
+
1972 minute = 0;
+
1973 hour ++;
1974 }
1975
-
1976 if( minute==60 ){
-
1977 minute = 0;
-
1978 hour ++;
-
1979 }
-
1980
-
1981 assert( second>=0 && second<60 );
-
1982 assert( minute>=0 && minute<60 );
-
1983 assert( hour>=0 && hour<24 );
-
1984
-
1985 return make_Time(hour,minute,second);
-
1986
-
1987}
-
-
1988
-
-
1989Date Context::queryTimeseriesDate( const char* label, const uint index ) const{
-
1990
-
1991 if( timeseries_data.find(label) == timeseries_data.end() ){ //does not exist
-
1992 helios_runtime_error("ERROR( Context::getTimeseriesDate): Timeseries variable " + std::string(label) + " does not exist.");
-
1993 }
+
1976 assert( second>=0 && second<60 );
+
1977 assert( minute>=0 && minute<60 );
+
1978 assert( hour>=0 && hour<24 );
+
1979
+
1980 return make_Time(hour,minute,second);
+
1981
+
1982}
+
+
1983
+
+
1984Date Context::queryTimeseriesDate( const char* label, const uint index ) const{
+
1985
+
1986 if( timeseries_data.find(label) == timeseries_data.end() ){ //does not exist
+
1987 helios_runtime_error("ERROR( Context::getTimeseriesDate): Timeseries variable " + std::string(label) + " does not exist.");
+
1988 }
+
1989
+
1990 double dateval = timeseries_datevalue.at(label).at(index);
+
1991
+
1992 int year = floor(floor(dateval)/366.25);
+
1993 assert( year>1000 && year<10000 );
1994
-
1995 double dateval = timeseries_datevalue.at(label).at(index);
-
1996
-
1997 int year = floor(floor(dateval)/366.25);
-
1998 assert( year>1000 && year<10000 );
+
1995 int JD = floor(dateval-floor(double(year)*366.25));
+
1996 assert( JD>0 && JD<367 );
+
1997
+
1998 Date date = Julian2Calendar(JD,year);
1999
-
2000 int JD = floor(dateval-floor(double(year)*366.25));
-
2001 assert( JD>0 && JD<367 );
-
2002
-
2003 Date date = Julian2Calendar(JD,year);
-
2004
-
2005 return Julian2Calendar(JD,year);
-
2006
-
2007}
-
-
2008
-
-
2009uint Context::getTimeseriesLength( const char* label ) const{
-
2010
-
2011 uint size = 0;
-
2012 if( timeseries_data.find(label) == timeseries_data.end() ){ //does not exist
-
2013 helios_runtime_error("ERROR (Context::getTimeseriesDate): Timeseries variable `" + std::string(label) + "' does not exist.");
-
2014 }else{
-
2015 size = timeseries_data.at(label).size();
-
2016 }
+
2000 return Julian2Calendar(JD,year);
+
2001
+
2002}
+
+
2003
+
+
2004uint Context::getTimeseriesLength( const char* label ) const{
+
2005
+
2006 uint size = 0;
+
2007 if( timeseries_data.find(label) == timeseries_data.end() ){ //does not exist
+
2008 helios_runtime_error("ERROR (Context::getTimeseriesDate): Timeseries variable `" + std::string(label) + "' does not exist.");
+
2009 }else{
+
2010 size = timeseries_data.at(label).size();
+
2011 }
+
2012
+
2013 return size;
+
2014}
+
+
2015
+
+
2016bool Context::doesTimeseriesVariableExist( const char* label ) const{
2017
-
2018 return size;
-
2019}
-
-
2020
-
-
2021bool Context::doesTimeseriesVariableExist( const char* label ) const{
-
2022
-
2023 if( timeseries_data.find(label) == timeseries_data.end() ) { //does not exist
-
2024 return false;
-
2025 }else{
-
2026 return true;
-
2027 }
-
2028
-
2029}
-
-
2030
-
-
2031void Context::getDomainBoundingBox( vec2& xbounds, vec2& ybounds, vec2& zbounds ) const{
-
2032
-
2033 xbounds.x = 1e8;
-
2034 xbounds.y = -1e8;
-
2035 ybounds.x = 1e8;
-
2036 ybounds.y = -1e8;
-
2037 zbounds.x = 1e8;
-
2038 zbounds.y = -1e8;
-
2039
-
2040 for( auto primitive : primitives){
-
2041
-
2042 const std::vector<vec3> &verts = getPrimitivePointer_private(primitive.first)->getVertices();
-
2043
-
2044 for( auto & vert : verts){
-
2045 if( vert.x<xbounds.x ){
-
2046 xbounds.x = vert.x;
-
2047 }else if( vert.x>xbounds.y ){
-
2048 xbounds.y = vert.x;
+
2018 if( timeseries_data.find(label) == timeseries_data.end() ) { //does not exist
+
2019 return false;
+
2020 }else{
+
2021 return true;
+
2022 }
+
2023
+
2024}
+
+
2025
+
+
2026void Context::getDomainBoundingBox( vec2& xbounds, vec2& ybounds, vec2& zbounds ) const{
+
2027
+
2028 xbounds.x = 1e8;
+
2029 xbounds.y = -1e8;
+
2030 ybounds.x = 1e8;
+
2031 ybounds.y = -1e8;
+
2032 zbounds.x = 1e8;
+
2033 zbounds.y = -1e8;
+
2034
+
2035 for( auto primitive : primitives){
+
2036
+
2037 const std::vector<vec3> &verts = getPrimitivePointer_private(primitive.first)->getVertices();
+
2038
+
2039 for( auto & vert : verts){
+
2040 if( vert.x<xbounds.x ){
+
2041 xbounds.x = vert.x;
+
2042 }else if( vert.x>xbounds.y ){
+
2043 xbounds.y = vert.x;
+
2044 }
+
2045 if( vert.y<ybounds.x ){
+
2046 ybounds.x = vert.y;
+
2047 }else if( vert.y>ybounds.y ){
+
2048 ybounds.y = vert.y;
2049 }
-
2050 if( vert.y<ybounds.x ){
-
2051 ybounds.x = vert.y;
-
2052 }else if( vert.y>ybounds.y ){
-
2053 ybounds.y = vert.y;
+
2050 if( vert.z<zbounds.x ){
+
2051 zbounds.x = vert.z;
+
2052 }else if( vert.z>zbounds.y ){
+
2053 zbounds.y = vert.z;
2054 }
-
2055 if( vert.z<zbounds.x ){
-
2056 zbounds.x = vert.z;
-
2057 }else if( vert.z>zbounds.y ){
-
2058 zbounds.y = vert.z;
-
2059 }
-
2060 }
-
2061
-
2062 }
-
2063
-
2064}
-
-
2065
-
-
2066void Context::getDomainBoundingBox( const std::vector<uint>& UUIDs, vec2& xbounds, vec2& ybounds, vec2& zbounds ) const{
-
2067
-
2068 xbounds.x = 1e8;
-
2069 xbounds.y = -1e8;
-
2070 ybounds.x = 1e8;
-
2071 ybounds.y = -1e8;
-
2072 zbounds.x = 1e8;
-
2073 zbounds.y = -1e8;
-
2074
-
2075 for( uint UUID : UUIDs){
-
2076
-
2077 const std::vector<vec3> &verts = getPrimitivePointer_private( UUID )->getVertices();
-
2078
-
2079 for( auto & vert : verts){
-
2080 if( vert.x<xbounds.x ){
-
2081 xbounds.x = vert.x;
-
2082 }else if( vert.x>xbounds.y ){
-
2083 xbounds.y = vert.x;
+
2055 }
+
2056
+
2057 }
+
2058
+
2059}
+
+
2060
+
+
2061void Context::getDomainBoundingBox( const std::vector<uint>& UUIDs, vec2& xbounds, vec2& ybounds, vec2& zbounds ) const{
+
2062
+
2063 xbounds.x = 1e8;
+
2064 xbounds.y = -1e8;
+
2065 ybounds.x = 1e8;
+
2066 ybounds.y = -1e8;
+
2067 zbounds.x = 1e8;
+
2068 zbounds.y = -1e8;
+
2069
+
2070 for( uint UUID : UUIDs){
+
2071
+
2072 const std::vector<vec3> &verts = getPrimitivePointer_private( UUID )->getVertices();
+
2073
+
2074 for( auto & vert : verts){
+
2075 if( vert.x<xbounds.x ){
+
2076 xbounds.x = vert.x;
+
2077 }else if( vert.x>xbounds.y ){
+
2078 xbounds.y = vert.x;
+
2079 }
+
2080 if( vert.y<ybounds.x ){
+
2081 ybounds.x = vert.y;
+
2082 }else if( vert.y>ybounds.y ){
+
2083 ybounds.y = vert.y;
2084 }
-
2085 if( vert.y<ybounds.x ){
-
2086 ybounds.x = vert.y;
-
2087 }else if( vert.y>ybounds.y ){
-
2088 ybounds.y = vert.y;
+
2085 if( vert.z<zbounds.x ){
+
2086 zbounds.x = vert.z;
+
2087 }else if( vert.z>zbounds.y ){
+
2088 zbounds.y = vert.z;
2089 }
-
2090 if( vert.z<zbounds.x ){
-
2091 zbounds.x = vert.z;
-
2092 }else if( vert.z>zbounds.y ){
-
2093 zbounds.y = vert.z;
-
2094 }
-
2095 }
-
2096
-
2097 }
-
2098
-
2099}
-
+
2090 }
+
2091
+
2092 }
+
2093
+
2094}
+
+
2095
+
+
2096void Context::getDomainBoundingSphere( vec3& center, float& radius ) const{
+
2097
+
2098 vec2 xbounds, ybounds, zbounds;
+
2099 getDomainBoundingBox( xbounds, ybounds, zbounds );
2100
-
-
2101void Context::getDomainBoundingSphere( vec3& center, float& radius ) const{
-
2102
-
2103 vec2 xbounds, ybounds, zbounds;
-
2104 getDomainBoundingBox( xbounds, ybounds, zbounds );
-
2105
-
2106 center.x = xbounds.x+0.5f*(xbounds.y - xbounds.x);
-
2107 center.y = ybounds.x+0.5f*(ybounds.y - ybounds.x);
-
2108 center.z = zbounds.x+0.5f*(zbounds.y - zbounds.x);
+
2101 center.x = xbounds.x+0.5f*(xbounds.y - xbounds.x);
+
2102 center.y = ybounds.x+0.5f*(ybounds.y - ybounds.x);
+
2103 center.z = zbounds.x+0.5f*(zbounds.y - zbounds.x);
+
2104
+
2105 radius = 0.5f*sqrtf( powf(xbounds.y-xbounds.x,2) + powf(ybounds.y-ybounds.x,2) + powf((zbounds.y-zbounds.x),2) );
+
2106
+
2107
+
2108}
+
2109
-
2110 radius = 0.5f*sqrtf( powf(xbounds.y-xbounds.x,2) + powf(ybounds.y-ybounds.x,2) + powf((zbounds.y-zbounds.x),2) );
+
+
2110void Context::getDomainBoundingSphere( const std::vector<uint>& UUIDs, vec3& center, float& radius ) const{
2111
-
2112
-
2113}
-
+
2112 vec2 xbounds, ybounds, zbounds;
+
2113 getDomainBoundingBox( UUIDs, xbounds, ybounds, zbounds );
2114
-
-
2115void Context::getDomainBoundingSphere( const std::vector<uint>& UUIDs, vec3& center, float& radius ) const{
-
2116
-
2117 vec2 xbounds, ybounds, zbounds;
-
2118 getDomainBoundingBox( UUIDs, xbounds, ybounds, zbounds );
-
2119
-
2120 center.x = xbounds.x+0.5f*(xbounds.y - xbounds.x);
-
2121 center.y = ybounds.x+0.5f*(ybounds.y - ybounds.x);
-
2122 center.z = zbounds.x+0.5f*(zbounds.y - zbounds.x);
+
2115 center.x = xbounds.x+0.5f*(xbounds.y - xbounds.x);
+
2116 center.y = ybounds.x+0.5f*(ybounds.y - ybounds.x);
+
2117 center.z = zbounds.x+0.5f*(zbounds.y - zbounds.x);
+
2118
+
2119 radius = 0.5f*sqrtf( powf(xbounds.y-xbounds.x,2) + powf(ybounds.y-ybounds.x,2) + powf((zbounds.y-zbounds.x),2) );
+
2120
+
2121
+
2122}
+
2123
-
2124 radius = 0.5f*sqrtf( powf(xbounds.y-xbounds.x,2) + powf(ybounds.y-ybounds.x,2) + powf((zbounds.y-zbounds.x),2) );
+
+
2124void Context::cropDomainX(const vec2 &xbounds ){
2125
-
2126
-
2127}
-
-
2128
-
-
2129void Context::cropDomainX(const vec2 &xbounds ){
-
2130
-
2131 const std::vector<uint> &UUIDs_all = getAllUUIDs();
-
2132
-
2133 for( uint p : UUIDs_all){
-
2134
-
2135 const std::vector<vec3> &vertices = getPrimitivePointer_private(p)->getVertices();
-
2136
-
2137 for(auto & vertex : vertices){
-
2138 if( vertex.x<xbounds.x || vertex.x>xbounds.y ){
-
2139 deletePrimitive(p);
-
2140 break;
-
2141 }
-
2142 }
-
2143
-
2144 }
-
2145
-
2146 if(getPrimitiveCount() == 0 ){
-
2147 std::cerr << "WARNING (Context::cropDomainX): No primitives were inside cropped area, and thus all primitives were deleted." << std::endl;
-
2148 }
-
2149
-
2150}
-
-
2151
-
-
2152void Context::cropDomainY(const vec2 &ybounds ){
-
2153
-
2154 const std::vector<uint> &UUIDs_all = getAllUUIDs();
-
2155
-
2156 for( uint p : UUIDs_all){
-
2157
-
2158 const std::vector<vec3> &vertices = getPrimitivePointer_private(p)->getVertices();
-
2159
-
2160 for(auto & vertex : vertices){
-
2161 if( vertex.y<ybounds.x || vertex.y>ybounds.y ){
-
2162 deletePrimitive(p);
-
2163 break;
-
2164 }
-
2165 }
-
2166
-
2167 }
-
2168
-
2169 if(getPrimitiveCount() == 0 ){
-
2170 std::cerr << "WARNING (Context::cropDomainY): No primitives were inside cropped area, and thus all primitives were deleted." << std::endl;
-
2171 }
-
2172
-
2173}
-
-
2174
-
-
2175void Context::cropDomainZ(const vec2 &zbounds ){
-
2176
-
2177 const std::vector<uint> &UUIDs_all = getAllUUIDs();
-
2178
-
2179 for( uint p : UUIDs_all){
-
2180
-
2181 const std::vector<vec3> &vertices = getPrimitivePointer_private(p)->getVertices();
-
2182
-
2183 for(auto & vertex : vertices){
-
2184 if( vertex.z<zbounds.x || vertex.z>zbounds.y ){
-
2185 deletePrimitive(p);
-
2186 break;
-
2187 }
-
2188 }
-
2189
-
2190 }
-
2191
-
2192 if(getPrimitiveCount() == 0 ){
-
2193 std::cerr << "WARNING (Context::cropDomainZ): No primitives were inside cropped area, and thus all primitives were deleted." << std::endl;
-
2194 }
-
2195
-
2196}
-
+
2126 const std::vector<uint> &UUIDs_all = getAllUUIDs();
+
2127
+
2128 for( uint p : UUIDs_all){
+
2129
+
2130 const std::vector<vec3> &vertices = getPrimitivePointer_private(p)->getVertices();
+
2131
+
2132 for(auto & vertex : vertices){
+
2133 if( vertex.x<xbounds.x || vertex.x>xbounds.y ){
+
2134 deletePrimitive(p);
+
2135 break;
+
2136 }
+
2137 }
+
2138
+
2139 }
+
2140
+
2141 if(getPrimitiveCount() == 0 ){
+
2142 std::cerr << "WARNING (Context::cropDomainX): No primitives were inside cropped area, and thus all primitives were deleted." << std::endl;
+
2143 }
+
2144
+
2145}
+
+
2146
+
+
2147void Context::cropDomainY(const vec2 &ybounds ){
+
2148
+
2149 const std::vector<uint> &UUIDs_all = getAllUUIDs();
+
2150
+
2151 for( uint p : UUIDs_all){
+
2152
+
2153 const std::vector<vec3> &vertices = getPrimitivePointer_private(p)->getVertices();
+
2154
+
2155 for(auto & vertex : vertices){
+
2156 if( vertex.y<ybounds.x || vertex.y>ybounds.y ){
+
2157 deletePrimitive(p);
+
2158 break;
+
2159 }
+
2160 }
+
2161
+
2162 }
+
2163
+
2164 if(getPrimitiveCount() == 0 ){
+
2165 std::cerr << "WARNING (Context::cropDomainY): No primitives were inside cropped area, and thus all primitives were deleted." << std::endl;
+
2166 }
+
2167
+
2168}
+
+
2169
+
+
2170void Context::cropDomainZ(const vec2 &zbounds ){
+
2171
+
2172 const std::vector<uint> &UUIDs_all = getAllUUIDs();
+
2173
+
2174 for( uint p : UUIDs_all){
+
2175
+
2176 const std::vector<vec3> &vertices = getPrimitivePointer_private(p)->getVertices();
+
2177
+
2178 for(auto & vertex : vertices){
+
2179 if( vertex.z<zbounds.x || vertex.z>zbounds.y ){
+
2180 deletePrimitive(p);
+
2181 break;
+
2182 }
+
2183 }
+
2184
+
2185 }
+
2186
+
2187 if(getPrimitiveCount() == 0 ){
+
2188 std::cerr << "WARNING (Context::cropDomainZ): No primitives were inside cropped area, and thus all primitives were deleted." << std::endl;
+
2189 }
+
2190
+
2191}
+
+
2192
+
+
2193void Context::cropDomain( std::vector<uint> &UUIDs, const vec2 &xbounds, const vec2 &ybounds, const vec2 &zbounds ){
+
2194
+
2195 size_t delete_count = 0;
+
2196 for( uint UUID : UUIDs){
2197
-
-
2198void Context::cropDomain( std::vector<uint> &UUIDs, const vec2 &xbounds, const vec2 &ybounds, const vec2 &zbounds ){
+
2198 const std::vector<vec3> &vertices = getPrimitivePointer_private(UUID)->getVertices();
2199
-
2200 size_t delete_count = 0;
-
2201 for( uint UUID : UUIDs){
-
2202
-
2203 const std::vector<vec3> &vertices = getPrimitivePointer_private(UUID)->getVertices();
-
2204
-
2205 for(auto & vertex : vertices){
-
2206 if( vertex.x<xbounds.x || vertex.x>xbounds.y || vertex.y<ybounds.x || vertex.y>ybounds.y || vertex.z<zbounds.x || vertex.z>zbounds.y ){
-
2207 deletePrimitive(UUID);
-
2208 delete_count++;
-
2209 break;
-
2210 }
-
2211 }
-
2212
-
2213 }
-
2214
-
2215 if( delete_count==UUIDs.size() ){
-
2216 std::cerr << "WARNING (Context::cropDomain): No specified primitives were entirely inside cropped area, and thus all specified primitives were deleted." << std::endl;
-
2217 }
-
2218
-
2219 cleanDeletedUUIDs( UUIDs );
-
2220
+
2200 for(auto & vertex : vertices){
+
2201 if( vertex.x<xbounds.x || vertex.x>xbounds.y || vertex.y<ybounds.x || vertex.y>ybounds.y || vertex.z<zbounds.x || vertex.z>zbounds.y ){
+
2202 deletePrimitive(UUID);
+
2203 delete_count++;
+
2204 break;
+
2205 }
+
2206 }
+
2207
+
2208 }
+
2209
+
2210 if( delete_count==UUIDs.size() ){
+
2211 std::cerr << "WARNING (Context::cropDomain): No specified primitives were entirely inside cropped area, and thus all specified primitives were deleted." << std::endl;
+
2212 }
+
2213
+
2214 cleanDeletedUUIDs( UUIDs );
+
2215
+
2216}
+
+
2217
+
+
2218void Context::cropDomain(const vec2 &xbounds, const vec2 &ybounds, const vec2 &zbounds ){
+
2219 std::vector<uint> UUIDs = getAllUUIDs();
+
2220 cropDomain( UUIDs, xbounds, ybounds, zbounds );
2221}
2222
-
2223void Context::cropDomain(const vec2 &xbounds, const vec2 &ybounds, const vec2 &zbounds ){
-
2224 std::vector<uint> UUIDs = getAllUUIDs();
-
2225 cropDomain( UUIDs, xbounds, ybounds, zbounds );
-
2226}
-
-
2227
-
-
2228uint CompoundObject::getObjectID() const{
-
2229 return OID;
-
2230}
-
-
2231
-
-
2232helios::ObjectType CompoundObject::getObjectType() const{
-
2233 return type;
-
2234}
-
+
2223uint CompoundObject::getObjectID() const{
+
2224 return OID;
+
2225}
+
+
2226
+
+
2227helios::ObjectType CompoundObject::getObjectType() const{
+
2228 return type;
+
2229}
+
+
2230
+
+
2231uint CompoundObject::getPrimitiveCount() const{
+
2232 return UUIDs.size();
+
2233}
+
+
2234
2235
-
2236uint CompoundObject::getPrimitiveCount() const{
-
2237 return UUIDs.size();
-
2238}
-
+
2236std::vector<uint> CompoundObject::getPrimitiveUUIDs() const{
+
2237
+
2238 return UUIDs;
2239
-
2240
-
-
2241std::vector<uint> CompoundObject::getPrimitiveUUIDs() const{
-
2242
-
2243 return UUIDs;
-
2244
-
2245}
-
-
2246
-
-
2247bool CompoundObject::doesObjectContainPrimitive(uint UUID ){
-
2248
-
2249 return find(UUIDs.begin(),UUIDs.end(),UUID)!=UUIDs.end();
-
2250
-
2251}
-
-
2252
-
-
2253helios::vec3 CompoundObject::getObjectCenter() const{
-
2254
-
2255 vec2 xbounds, ybounds, zbounds;
-
2256
-
2257 const std::vector<uint> &U = getPrimitiveUUIDs();
-
2258
-
2259 context->getDomainBoundingBox( U, xbounds, ybounds, zbounds );
-
2260
-
2261 vec3 origin;
-
2262
-
2263 origin.x = 0.5f*(xbounds.x+xbounds.y);
-
2264 origin.y = 0.5f*(ybounds.x+ybounds.y);
-
2265 origin.z = 0.5f*(zbounds.x+zbounds.y);
+
2240}
+
+
2241
+
+
2242bool CompoundObject::doesObjectContainPrimitive(uint UUID ){
+
2243
+
2244 return find(UUIDs.begin(),UUIDs.end(),UUID)!=UUIDs.end();
+
2245
+
2246}
+
+
2247
+
+
2248helios::vec3 CompoundObject::getObjectCenter() const{
+
2249
+
2250 vec2 xbounds, ybounds, zbounds;
+
2251
+
2252 const std::vector<uint> &U = getPrimitiveUUIDs();
+
2253
+
2254 context->getDomainBoundingBox( U, xbounds, ybounds, zbounds );
+
2255
+
2256 vec3 origin;
+
2257
+
2258 origin.x = 0.5f*(xbounds.x+xbounds.y);
+
2259 origin.y = 0.5f*(ybounds.x+ybounds.y);
+
2260 origin.z = 0.5f*(zbounds.x+zbounds.y);
+
2261
+
2262 return origin;
+
2263}
+
+
2264
+
+
2265float CompoundObject::getArea() const{
2266
-
2267 return origin;
-
2268}
-
-
2269
-
-
2270float CompoundObject::getArea() const{
-
2271
-
2272 float area = 0.f;
-
2273
-
2274 for( uint UUID : UUIDs){
-
2275
-
2276 if( context->doesPrimitiveExist( UUID ) ){
-
2277 area += context->getPrimitiveArea(UUID);
-
2278 }
-
2279
-
2280 }
-
2281
-
2282 return area;
+
2267 float area = 0.f;
+
2268
+
2269 for( uint UUID : UUIDs){
+
2270
+
2271 if( context->doesPrimitiveExist( UUID ) ){
+
2272 area += context->getPrimitiveArea(UUID);
+
2273 }
+
2274
+
2275 }
+
2276
+
2277 return area;
+
2278
+
2279}
+
+
2280
+
+
2281void CompoundObject::setColor( const helios::RGBcolor& a_color ){
+
2282 for( uint UUID : UUIDs){
2283
-
2284}
-
-
2285
-
-
2286void CompoundObject::setColor( const helios::RGBcolor& a_color ){
-
2287 for( uint UUID : UUIDs){
-
2288
-
2289 if( context->doesPrimitiveExist( UUID ) ){
-
2290 context->setPrimitiveColor( UUID, a_color );
-
2291 }
-
2292
-
2293 }
-
2294}
-
-
2295
-
-
2296void CompoundObject::setColor( const helios::RGBAcolor& a_color ){
-
2297 for( uint UUID : UUIDs){
-
2298
-
2299 if( context->doesPrimitiveExist( UUID ) ){
-
2300 context->setPrimitiveColor( UUID, a_color );
-
2301 }
-
2302
-
2303 }
-
2304}
-
-
2305
-
-
2306void CompoundObject::overrideTextureColor(){
-
2307 for( uint UUID : UUIDs){
-
2308
-
2309 if( context->doesPrimitiveExist( UUID ) ){
-
2310 context->overridePrimitiveTextureColor( UUID );
-
2311 }
-
2312
-
2313 }
-
2314}
-
-
2315
-
-
2316void CompoundObject::useTextureColor(){
-
2317 for( uint UUID : UUIDs){
-
2318
-
2319 if( context->doesPrimitiveExist( UUID ) ){
-
2320 context->usePrimitiveTextureColor( UUID );
-
2321 }
-
2322
-
2323 }
-
2324}
-
-
2325
-
-
2326bool CompoundObject::hasTexture() const{
-
2327 if( getTextureFile().empty() ){
-
2328 return false;
-
2329 }else{
-
2330 return true;
-
2331 }
-
2332}
-
-
2333
-
-
2334std::string CompoundObject::getTextureFile() const{
-
2335 return texturefile;
-
2336}
-
-
2337
-
-
2338void CompoundObject::translate( const helios::vec3& shift ){
-
2339
-
2340 if( shift==nullorigin ){
-
2341 return;
-
2342 }
+
2284 if( context->doesPrimitiveExist( UUID ) ){
+
2285 context->setPrimitiveColor( UUID, a_color );
+
2286 }
+
2287
+
2288 }
+
2289}
+
+
2290
+
+
2291void CompoundObject::setColor( const helios::RGBAcolor& a_color ){
+
2292 for( uint UUID : UUIDs){
+
2293
+
2294 if( context->doesPrimitiveExist( UUID ) ){
+
2295 context->setPrimitiveColor( UUID, a_color );
+
2296 }
+
2297
+
2298 }
+
2299}
+
+
2300
+
+
2301void CompoundObject::overrideTextureColor(){
+
2302 for( uint UUID : UUIDs){
+
2303
+
2304 if( context->doesPrimitiveExist( UUID ) ){
+
2305 context->overridePrimitiveTextureColor( UUID );
+
2306 }
+
2307
+
2308 }
+
2309}
+
+
2310
+
+
2311void CompoundObject::useTextureColor(){
+
2312 for( uint UUID : UUIDs){
+
2313
+
2314 if( context->doesPrimitiveExist( UUID ) ){
+
2315 context->usePrimitiveTextureColor( UUID );
+
2316 }
+
2317
+
2318 }
+
2319}
+
+
2320
+
+
2321bool CompoundObject::hasTexture() const{
+
2322 if( getTextureFile().empty() ){
+
2323 return false;
+
2324 }else{
+
2325 return true;
+
2326 }
+
2327}
+
+
2328
+
+
2329std::string CompoundObject::getTextureFile() const{
+
2330 return texturefile;
+
2331}
+
+
2332
+
+
2333void CompoundObject::translate( const helios::vec3& shift ){
+
2334
+
2335 if( shift==nullorigin ){
+
2336 return;
+
2337 }
+
2338
+
2339 float T[16], T_prim[16];
+
2340 makeTranslationMatrix(shift,T);
+
2341
+
2342 matmult(T,transform,transform);
2343
-
2344 float T[16], T_prim[16];
-
2345 makeTranslationMatrix(shift,T);
-
2346
-
2347 matmult(T,transform,transform);
-
2348
-
2349 for( uint UUID : UUIDs){
-
2350
-
2351 if( context->doesPrimitiveExist( UUID ) ){
+
2344 for( uint UUID : UUIDs){
+
2345
+
2346 if( context->doesPrimitiveExist( UUID ) ){
+
2347
+
2348 context->getPrimitiveTransformationMatrix( UUID,T_prim);
+
2349 matmult(T,T_prim,T_prim);
+
2350 context->setPrimitiveTransformationMatrix( UUID,T_prim);
+
2351 }
2352
-
2353 context->getPrimitiveTransformationMatrix( UUID,T_prim);
-
2354 matmult(T,T_prim,T_prim);
-
2355 context->setPrimitiveTransformationMatrix( UUID,T_prim);
-
2356 }
-
2357
-
2358 }
-
2359
-
2360}
-
-
2361
-
-
2362void CompoundObject::rotate(float rotation_radians, const char* rotation_axis_xyz_string ){
-
2363
-
2364 if(rotation_radians == 0 ){
-
2365 return;
-
2366 }
+
2353 }
+
2354
+
2355}
+
+
2356
+
+
2357void CompoundObject::rotate(float rotation_radians, const char* rotation_axis_xyz_string ){
+
2358
+
2359 if(rotation_radians == 0 ){
+
2360 return;
+
2361 }
+
2362
+
2363 if(strcmp(rotation_axis_xyz_string, "z") == 0 ){
+
2364 float Rz[16], Rz_prim[16];
+
2365 makeRotationMatrix(-rotation_radians, "z", Rz);
+
2366 matmult(Rz,transform,transform);
2367
-
2368 if(strcmp(rotation_axis_xyz_string, "z") == 0 ){
-
2369 float Rz[16], Rz_prim[16];
-
2370 makeRotationMatrix(-rotation_radians, "z", Rz);
-
2371 matmult(Rz,transform,transform);
-
2372
-
2373 for( uint UUID : UUIDs){
-
2374 if( context->doesPrimitiveExist( UUID ) ){
-
2375 context->getPrimitiveTransformationMatrix( UUID,Rz_prim);
-
2376 matmult(Rz,Rz_prim,Rz_prim);
-
2377 context->setPrimitiveTransformationMatrix( UUID,Rz_prim);
-
2378 }
-
2379 }
-
2380 }else if(strcmp(rotation_axis_xyz_string, "y") == 0 ){
-
2381 float Ry[16], Ry_prim[16];
-
2382 makeRotationMatrix(rotation_radians, "y", Ry);
-
2383 matmult(Ry,transform,transform);
-
2384 for( uint UUID : UUIDs){
-
2385 if( context->doesPrimitiveExist( UUID ) ){
-
2386 context->getPrimitiveTransformationMatrix( UUID,Ry_prim);
-
2387 matmult(Ry,Ry_prim,Ry_prim);
-
2388 context->setPrimitiveTransformationMatrix( UUID,Ry_prim);
-
2389 }
-
2390 }
-
2391 }else if(strcmp(rotation_axis_xyz_string, "x") == 0 ){
-
2392 float Rx[16], Rx_prim[16];
-
2393 makeRotationMatrix(rotation_radians, "x", Rx);
-
2394 matmult(Rx,transform,transform);
-
2395 for( uint UUID : UUIDs){
-
2396 if( context->doesPrimitiveExist( UUID ) ){
-
2397 context->getPrimitiveTransformationMatrix( UUID,Rx_prim);
-
2398 matmult(Rx,Rx_prim,Rx_prim);
-
2399 context->setPrimitiveTransformationMatrix( UUID,Rx_prim);
-
2400 }
-
2401 }
-
2402 }else{
-
2403 helios_runtime_error("ERROR (CompoundObject::rotate): Rotation axis should be one of x, y, or z.");
-
2404 }
-
2405
-
2406}
-
-
2407
-
-
2408void CompoundObject::rotate(float rotation_radians, const helios::vec3& rotation_axis_vector ){
-
2409
-
2410 if(rotation_radians == 0 ){
-
2411 return;
-
2412 }
-
2413
-
2414 float R[16], R_prim[16];
-
2415 makeRotationMatrix(rotation_radians, rotation_axis_vector, R);
-
2416 matmult(R,transform,transform);
-
2417
-
2418 for( uint UUID : UUIDs){
-
2419
-
2420 if( context->doesPrimitiveExist( UUID ) ){
-
2421
-
2422 context->getPrimitiveTransformationMatrix( UUID,R_prim);
-
2423 matmult(R,R_prim,R_prim);
-
2424 context->setPrimitiveTransformationMatrix( UUID,R_prim);
-
2425
-
2426 }
-
2427
-
2428 }
-
2429
-
2430}
-
-
2431
-
-
2432void CompoundObject::rotate(float rotation_radians, const helios::vec3& origin, const helios::vec3& rotation_axis_vector ){
-
2433
-
2434 if(rotation_radians == 0 ){
-
2435 return;
-
2436 }
-
2437
-
2438 float R[16], R_prim[16];
-
2439 makeRotationMatrix(rotation_radians, origin, rotation_axis_vector, R);
-
2440 matmult(R,transform,transform);
-
2441
-
2442 for( uint UUID : UUIDs){
-
2443
-
2444 if( context->doesPrimitiveExist( UUID ) ){
-
2445
-
2446 context->getPrimitiveTransformationMatrix( UUID,R_prim);
-
2447 matmult(R,R_prim,R_prim);
-
2448 context->setPrimitiveTransformationMatrix( UUID,R_prim);
-
2449
-
2450 }
-
2451
-
2452 }
-
2453
-
2454}
-
-
2455
-
-
2456void CompoundObject::scale( const helios::vec3 &scale ){
-
2457 scaleAboutPoint( scale, nullorigin );
-
2458}
-
-
2459
- -
2463
-
-
2464void CompoundObject::scaleAboutPoint( const helios::vec3 &scale, const helios::vec3 &point ){
-
2465
-
2466 if( scale.x==1.f && scale.y==1.f && scale.z==1.f ){
-
2467 return;
-
2468 }
-
2469
-
2470 float T[16], T_prim[16];
-
2471 makeScaleMatrix( scale, point, T);
-
2472 matmult(T,transform,transform);
-
2473
-
2474 for( uint UUID : UUIDs) {
-
2475
-
2476 if (context->doesPrimitiveExist(UUID)) {
-
2477
-
2478 context->getPrimitiveTransformationMatrix(UUID, T_prim);
-
2479 matmult(T, T_prim, T_prim);
-
2480 context->setPrimitiveTransformationMatrix(UUID, T_prim);
-
2481
-
2482 }
-
2483
-
2484 }
-
2485
-
2486}
-
-
2487
-
-
2488void CompoundObject::getTransformationMatrix( float (&T)[16] ) const{
-
2489 for( int i=0; i<16; i++ ){
-
2490 T[i]=transform[i];
-
2491 }
-
2492}
-
-
2493
-
-
2494void CompoundObject::setTransformationMatrix( float (&T)[16] ){
-
2495
-
2496 for( int i=0; i<16; i++ ){
-
2497 transform[i] = T[i];
-
2498 }
-
2499
-
2500}
-
-
2501
-
-
2502void CompoundObject::setPrimitiveUUIDs( const std::vector<uint> &a_UUIDs ){
-
2503 UUIDs = a_UUIDs;
-
2504}
-
-
2505
-
-
2506void CompoundObject::deleteChildPrimitive( uint UUID ){
-
2507 auto it = find( UUIDs.begin(), UUIDs.end(), UUID );
-
2508 if( it!=UUIDs.end() ){
-
2509 std::iter_swap(it,UUIDs.end()-1);
-
2510 UUIDs.pop_back();
-
2511 primitivesarecomplete=false;
-
2512 }
-
2513}
-
-
2514
-
-
2515void CompoundObject::deleteChildPrimitive( const std::vector<uint> &a_UUIDs ){
-
2516 for( uint UUID : a_UUIDs ){
-
2517 deleteChildPrimitive(UUID);
-
2518 }
-
2519}
-
-
2520
-
-
2521bool CompoundObject::arePrimitivesComplete() const{
-
2522 return primitivesarecomplete;
-
2523}
-
-
2524
-
-
2525bool Context::areObjectPrimitivesComplete( uint objID ) const{
-
2526 return getObjectPointer(objID)->arePrimitivesComplete();
-
2527}
-
-
2528
-
-
2529void Context::cleanDeletedObjectIDs( std::vector<uint> &objIDs ) const {
-
2530 for (int i = objIDs.size() - 1; i >= 0; i--) {
-
2531 if (!doesObjectExist(objIDs.at(i))) {
-
2532 objIDs.erase(objIDs.begin() + i);
-
2533 }
-
2534 }
-
2535}
-
-
2536
-
-
2537void Context::cleanDeletedObjectIDs( std::vector<std::vector<uint>> &objIDs ) const{
-
2538 for( int j=objIDs.size()-1; j>=0; j-- ){
-
2539 for (int i = objIDs.at(j).size() - 1; i >= 0; i--) {
-
2540 if (!doesObjectExist(objIDs.at(j).at(i))) {
-
2541 objIDs.at(j).erase( objIDs.at(j).begin() + i);
-
2542 }
-
2543 }
-
2544 }
-
2545}
-
-
2546
-
-
2547void Context::cleanDeletedObjectIDs( std::vector<std::vector<std::vector<uint>>> &objIDs ) const{
-
2548 for( int k=objIDs.size()-1; k>=0; k-- ) {
-
2549 for (int j = objIDs.at(k).size() - 1; j >= 0; j--) {
-
2550 for (int i = objIDs.at(k).at(j).size() - 1; i >= 0; i--) {
-
2551 if (!doesObjectExist(objIDs.at(k).at(j).at(i))) {
-
2552 objIDs.at(k).at(j).erase(objIDs.at(k).at(j).begin() + i);
-
2553 }
-
2554 }
-
2555 }
-
2556 }
-
2557}
-
-
2558
-
-
2559CompoundObject* Context::getObjectPointer( uint ObjID ) const{
-
2560 if( objects.find(ObjID) == objects.end() ){
-
2561 helios_runtime_error("ERROR (Context::getObjectPointer): ObjectID of " + std::to_string(ObjID) + " does not exist in the Context.");
-
2562 }
-
2563 return objects.at(ObjID);
-
2564}
-
-
2565
-
-
2566uint Context::getObjectCount() const{
-
2567 return objects.size();
-
2568}
-
-
2569
-
-
2570bool Context::doesObjectExist( const uint ObjID ) const{
-
2571 return objects.find(ObjID) != objects.end();
-
2572}
-
-
2573
-
-
2574std::vector<uint> Context::getAllObjectIDs() const{
-
2575 std::vector<uint> objIDs(objects.size());
-
2576 size_t i=0;
-
2577 for(auto object : objects){
-
2578 if( object.second->ishidden ){
-
2579 continue;
-
2580 }
-
2581 objIDs.at(i) = object.first;
-
2582 i++;
-
2583 }
-
2584 objIDs.resize(i);
-
2585 return objIDs;
-
2586}
-
-
2587
-
-
2588void Context::deleteObject(const std::vector<uint> &ObjIDs ){
-
2589 for( uint ObjID : ObjIDs){
-
2590 deleteObject( ObjID );
-
2591 }
-
2592}
-
-
2593
-
-
2594void Context::deleteObject(uint ObjID ){
-
2595
-
2596 if( objects.find(ObjID) == objects.end() ){
-
2597 helios_runtime_error("ERROR (Context::deleteObject): Object ID of " + std::to_string(ObjID) + " not found in the context.");
-
2598 }
+
2368 for( uint UUID : UUIDs){
+
2369 if( context->doesPrimitiveExist( UUID ) ){
+
2370 context->getPrimitiveTransformationMatrix( UUID,Rz_prim);
+
2371 matmult(Rz,Rz_prim,Rz_prim);
+
2372 context->setPrimitiveTransformationMatrix( UUID,Rz_prim);
+
2373 }
+
2374 }
+
2375 }else if(strcmp(rotation_axis_xyz_string, "y") == 0 ){
+
2376 float Ry[16], Ry_prim[16];
+
2377 makeRotationMatrix(rotation_radians, "y", Ry);
+
2378 matmult(Ry,transform,transform);
+
2379 for( uint UUID : UUIDs){
+
2380 if( context->doesPrimitiveExist( UUID ) ){
+
2381 context->getPrimitiveTransformationMatrix( UUID,Ry_prim);
+
2382 matmult(Ry,Ry_prim,Ry_prim);
+
2383 context->setPrimitiveTransformationMatrix( UUID,Ry_prim);
+
2384 }
+
2385 }
+
2386 }else if(strcmp(rotation_axis_xyz_string, "x") == 0 ){
+
2387 float Rx[16], Rx_prim[16];
+
2388 makeRotationMatrix(rotation_radians, "x", Rx);
+
2389 matmult(Rx,transform,transform);
+
2390 for( uint UUID : UUIDs){
+
2391 if( context->doesPrimitiveExist( UUID ) ){
+
2392 context->getPrimitiveTransformationMatrix( UUID,Rx_prim);
+
2393 matmult(Rx,Rx_prim,Rx_prim);
+
2394 context->setPrimitiveTransformationMatrix( UUID,Rx_prim);
+
2395 }
+
2396 }
+
2397 }else{
+
2398 helios_runtime_error("ERROR (CompoundObject::rotate): Rotation axis should be one of x, y, or z.");
+
2399 }
+
2400
+
2401}
+
+
2402
+
+
2403void CompoundObject::rotate(float rotation_radians, const helios::vec3& rotation_axis_vector ){
+
2404
+
2405 if(rotation_radians == 0 ){
+
2406 return;
+
2407 }
+
2408
+
2409 float R[16], R_prim[16];
+
2410 makeRotationMatrix(rotation_radians, rotation_axis_vector, R);
+
2411 matmult(R,transform,transform);
+
2412
+
2413 for( uint UUID : UUIDs){
+
2414
+
2415 if( context->doesPrimitiveExist( UUID ) ){
+
2416
+
2417 context->getPrimitiveTransformationMatrix( UUID,R_prim);
+
2418 matmult(R,R_prim,R_prim);
+
2419 context->setPrimitiveTransformationMatrix( UUID,R_prim);
+
2420
+
2421 }
+
2422
+
2423 }
+
2424
+
2425}
+
+
2426
+
+
2427void CompoundObject::rotate(float rotation_radians, const helios::vec3& origin, const helios::vec3& rotation_axis_vector ){
+
2428
+
2429 if(rotation_radians == 0 ){
+
2430 return;
+
2431 }
+
2432
+
2433 float R[16], R_prim[16];
+
2434 makeRotationMatrix(rotation_radians, origin, rotation_axis_vector, R);
+
2435 matmult(R,transform,transform);
+
2436
+
2437 for( uint UUID : UUIDs){
+
2438
+
2439 if( context->doesPrimitiveExist( UUID ) ){
+
2440
+
2441 context->getPrimitiveTransformationMatrix( UUID,R_prim);
+
2442 matmult(R,R_prim,R_prim);
+
2443 context->setPrimitiveTransformationMatrix( UUID,R_prim);
+
2444
+
2445 }
+
2446
+
2447 }
+
2448
+
2449}
+
+
2450
+
+
2451void CompoundObject::scale( const helios::vec3 &scale ){
+
2452 scaleAboutPoint( scale, nullorigin );
+
2453}
+
+
2454
+ +
2458
+
+
2459void CompoundObject::scaleAboutPoint( const helios::vec3 &scale, const helios::vec3 &point ){
+
2460
+
2461 if( scale.x==1.f && scale.y==1.f && scale.z==1.f ){
+
2462 return;
+
2463 }
+
2464
+
2465 float T[16], T_prim[16];
+
2466 makeScaleMatrix( scale, point, T);
+
2467 matmult(T,transform,transform);
+
2468
+
2469 for( uint UUID : UUIDs) {
+
2470
+
2471 if (context->doesPrimitiveExist(UUID)) {
+
2472
+
2473 context->getPrimitiveTransformationMatrix(UUID, T_prim);
+
2474 matmult(T, T_prim, T_prim);
+
2475 context->setPrimitiveTransformationMatrix(UUID, T_prim);
+
2476
+
2477 }
+
2478
+
2479 }
+
2480
+
2481}
+
+
2482
+
+
2483void CompoundObject::getTransformationMatrix( float (&T)[16] ) const{
+
2484 for( int i=0; i<16; i++ ){
+
2485 T[i]=transform[i];
+
2486 }
+
2487}
+
+
2488
+
+
2489void CompoundObject::setTransformationMatrix( float (&T)[16] ){
+
2490
+
2491 for( int i=0; i<16; i++ ){
+
2492 transform[i] = T[i];
+
2493 }
+
2494
+
2495}
+
+
2496
+
+
2497void CompoundObject::setPrimitiveUUIDs( const std::vector<uint> &a_UUIDs ){
+
2498 UUIDs = a_UUIDs;
+
2499}
+
+
2500
+
+
2501void CompoundObject::deleteChildPrimitive( uint UUID ){
+
2502 auto it = find( UUIDs.begin(), UUIDs.end(), UUID );
+
2503 if( it!=UUIDs.end() ){
+
2504 std::iter_swap(it,UUIDs.end()-1);
+
2505 UUIDs.pop_back();
+
2506 primitivesarecomplete=false;
+
2507 }
+
2508}
+
+
2509
+
+
2510void CompoundObject::deleteChildPrimitive( const std::vector<uint> &a_UUIDs ){
+
2511 for( uint UUID : a_UUIDs ){
+
2512 deleteChildPrimitive(UUID);
+
2513 }
+
2514}
+
+
2515
+
+
2516bool CompoundObject::arePrimitivesComplete() const{
+
2517 return primitivesarecomplete;
+
2518}
+
+
2519
+
+
2520bool Context::areObjectPrimitivesComplete( uint objID ) const{
+
2521 return getObjectPointer(objID)->arePrimitivesComplete();
+
2522}
+
+
2523
+
+
2524void Context::cleanDeletedObjectIDs( std::vector<uint> &objIDs ) const {
+
2525 for (int i = objIDs.size() - 1; i >= 0; i--) {
+
2526 if (!doesObjectExist(objIDs.at(i))) {
+
2527 objIDs.erase(objIDs.begin() + i);
+
2528 }
+
2529 }
+
2530}
+
+
2531
+
+
2532void Context::cleanDeletedObjectIDs( std::vector<std::vector<uint>> &objIDs ) const{
+
2533 for( int j=objIDs.size()-1; j>=0; j-- ){
+
2534 for (int i = objIDs.at(j).size() - 1; i >= 0; i--) {
+
2535 if (!doesObjectExist(objIDs.at(j).at(i))) {
+
2536 objIDs.at(j).erase( objIDs.at(j).begin() + i);
+
2537 }
+
2538 }
+
2539 }
+
2540}
+
+
2541
+
+
2542void Context::cleanDeletedObjectIDs( std::vector<std::vector<std::vector<uint>>> &objIDs ) const{
+
2543 for( int k=objIDs.size()-1; k>=0; k-- ) {
+
2544 for (int j = objIDs.at(k).size() - 1; j >= 0; j--) {
+
2545 for (int i = objIDs.at(k).at(j).size() - 1; i >= 0; i--) {
+
2546 if (!doesObjectExist(objIDs.at(k).at(j).at(i))) {
+
2547 objIDs.at(k).at(j).erase(objIDs.at(k).at(j).begin() + i);
+
2548 }
+
2549 }
+
2550 }
+
2551 }
+
2552}
+
+
2553
+
+
2554CompoundObject* Context::getObjectPointer( uint ObjID ) const{
+
2555 if( objects.find(ObjID) == objects.end() ){
+
2556 helios_runtime_error("ERROR (Context::getObjectPointer): ObjectID of " + std::to_string(ObjID) + " does not exist in the Context.");
+
2557 }
+
2558 return objects.at(ObjID);
+
2559}
+
+
2560
+
+
2561uint Context::getObjectCount() const{
+
2562 return objects.size();
+
2563}
+
+
2564
+
+
2565bool Context::doesObjectExist( const uint ObjID ) const{
+
2566 return objects.find(ObjID) != objects.end();
+
2567}
+
+
2568
+
+
2569std::vector<uint> Context::getAllObjectIDs() const{
+
2570 std::vector<uint> objIDs(objects.size());
+
2571 size_t i=0;
+
2572 for(auto object : objects){
+
2573 if( object.second->ishidden ){
+
2574 continue;
+
2575 }
+
2576 objIDs.at(i) = object.first;
+
2577 i++;
+
2578 }
+
2579 objIDs.resize(i);
+
2580 return objIDs;
+
2581}
+
+
2582
+
+
2583void Context::deleteObject(const std::vector<uint> &ObjIDs ){
+
2584 for( uint ObjID : ObjIDs){
+
2585 deleteObject( ObjID );
+
2586 }
+
2587}
+
+
2588
+
+
2589void Context::deleteObject(uint ObjID ){
+
2590
+
2591 if( objects.find(ObjID) == objects.end() ){
+
2592 helios_runtime_error("ERROR (Context::deleteObject): Object ID of " + std::to_string(ObjID) + " not found in the context.");
+
2593 }
+
2594
+
2595 CompoundObject* obj = objects.at(ObjID);
+
2596
+
2597 const std::vector<uint> &UUIDs = obj->getPrimitiveUUIDs();
+
2598
2599
-
2600 CompoundObject* obj = objects.at(ObjID);
-
2601
-
2602 const std::vector<uint> &UUIDs = obj->getPrimitiveUUIDs();
-
2603
+
2600 delete obj;
+
2601 objects.erase(ObjID);
+
2602
+
2603 deletePrimitive(UUIDs);
2604
-
2605 delete obj;
-
2606 objects.erase(ObjID);
-
2607
-
2608 deletePrimitive(UUIDs);
-
2609
-
2610 markGeometryDirty();
-
2611
-
2612}
-
-
2613
-
-
2614std::vector<uint> Context::copyObject(const std::vector<uint> &ObjIDs ){
-
2615
-
2616 std::vector<uint> ObjIDs_copy(ObjIDs.size());
-
2617 size_t i=0;
-
2618 for( uint ObjID : ObjIDs){
-
2619 ObjIDs_copy.at(i) = copyObject( ObjID );
-
2620 i++;
-
2621 }
-
2622
-
2623 return ObjIDs_copy;
-
2624
-
2625}
-
-
2626
-
-
2627uint Context::copyObject(uint ObjID ){
-
2628
-
2629 if( objects.find(ObjID) == objects.end() ){
-
2630 helios_runtime_error("ERROR (Context::copyObject): Object ID of " + std::to_string(ObjID) + " not found in the context.");
-
2631 }
-
2632
-
2633 ObjectType type = objects.at(ObjID)->getObjectType();
-
2634
-
2635 const std::vector<uint> &UUIDs = getObjectPointer(ObjID)->getPrimitiveUUIDs();
+
2605 markGeometryDirty();
+
2606
+
2607}
+
+
2608
+
+
2609std::vector<uint> Context::copyObject(const std::vector<uint> &ObjIDs ){
+
2610
+
2611 std::vector<uint> ObjIDs_copy(ObjIDs.size());
+
2612 size_t i=0;
+
2613 for( uint ObjID : ObjIDs){
+
2614 ObjIDs_copy.at(i) = copyObject( ObjID );
+
2615 i++;
+
2616 }
+
2617
+
2618 return ObjIDs_copy;
+
2619
+
2620}
+
+
2621
+
+
2622uint Context::copyObject(uint ObjID ){
+
2623
+
2624 if( objects.find(ObjID) == objects.end() ){
+
2625 helios_runtime_error("ERROR (Context::copyObject): Object ID of " + std::to_string(ObjID) + " not found in the context.");
+
2626 }
+
2627
+
2628 ObjectType type = objects.at(ObjID)->getObjectType();
+
2629
+
2630 const std::vector<uint> &UUIDs = getObjectPointer(ObjID)->getPrimitiveUUIDs();
+
2631
+
2632 const std::vector<uint> &UUIDs_copy = copyPrimitive( UUIDs );
+
2633 for( uint p : UUIDs_copy){
+
2634 getPrimitivePointer_private(p)->setParentObjectID( currentObjectID );
+
2635 }
2636
-
2637 const std::vector<uint> &UUIDs_copy = copyPrimitive( UUIDs );
-
2638 for( uint p : UUIDs_copy){
-
2639 getPrimitivePointer_private(p)->setParentObjectID( currentObjectID );
-
2640 }
-
2641
-
2642 const std::string &texturefile = objects.at(ObjID)->getTextureFile();
-
2643
-
2644 if( type==OBJECT_TYPE_TILE ){
-
2645
-
2646 Tile* o = getTileObjectPointer( ObjID );
-
2647
-
2648 const int2 &subdiv = o->getSubdivisionCount();
-
2649
-
2650 auto* tile_new = (new Tile(currentObjectID, UUIDs_copy, subdiv, texturefile.c_str(), this));
-
2651
-
2652 objects[currentObjectID] = tile_new;
-
2653
-
2654 }else if( type==OBJECT_TYPE_SPHERE ){
-
2655
-
2656 Sphere* o = getSphereObjectPointer( ObjID );
-
2657
-
2658 uint subdiv = o->getSubdivisionCount();
-
2659
-
2660 auto* sphere_new = (new Sphere(currentObjectID, UUIDs_copy, subdiv, texturefile.c_str(), this));
-
2661
-
2662 objects[currentObjectID] = sphere_new;
-
2663
-
2664 }else if( type==OBJECT_TYPE_TUBE ){
-
2665
-
2666 Tube* o = getTubeObjectPointer( ObjID );
-
2667
-
2668 const std::vector<vec3> &nodes = o->getNodes();
-
2669 const std::vector<float> &radius = o->getNodeRadii();
-
2670 const std::vector<RGBcolor> &colors = o->getNodeColors();
-
2671 const std::vector<std::vector<vec3>> &triangle_vertices = o->getTriangleVertices();
-
2672 uint subdiv = o->getSubdivisionCount();
-
2673
-
2674 auto* tube_new = (new Tube(currentObjectID, UUIDs_copy, nodes, radius, colors, triangle_vertices, subdiv, texturefile.c_str(), this));
-
2675
-
2676 objects[currentObjectID] = tube_new;
-
2677
-
2678 }else if( type==OBJECT_TYPE_BOX ){
+
2637 const std::string &texturefile = objects.at(ObjID)->getTextureFile();
+
2638
+
2639 if( type==OBJECT_TYPE_TILE ){
+
2640
+
2641 Tile* o = getTileObjectPointer( ObjID );
+
2642
+
2643 const int2 &subdiv = o->getSubdivisionCount();
+
2644
+
2645 auto* tile_new = (new Tile(currentObjectID, UUIDs_copy, subdiv, texturefile.c_str(), this));
+
2646
+
2647 objects[currentObjectID] = tile_new;
+
2648
+
2649 }else if( type==OBJECT_TYPE_SPHERE ){
+
2650
+
2651 Sphere* o = getSphereObjectPointer( ObjID );
+
2652
+
2653 uint subdiv = o->getSubdivisionCount();
+
2654
+
2655 auto* sphere_new = (new Sphere(currentObjectID, UUIDs_copy, subdiv, texturefile.c_str(), this));
+
2656
+
2657 objects[currentObjectID] = sphere_new;
+
2658
+
2659 }else if( type==OBJECT_TYPE_TUBE ){
+
2660
+
2661 Tube* o = getTubeObjectPointer( ObjID );
+
2662
+
2663 const std::vector<vec3> &nodes = o->getNodes();
+
2664 const std::vector<float> &radius = o->getNodeRadii();
+
2665 const std::vector<RGBcolor> &colors = o->getNodeColors();
+
2666 const std::vector<std::vector<vec3>> &triangle_vertices = o->getTriangleVertices();
+
2667 uint subdiv = o->getSubdivisionCount();
+
2668
+
2669 auto* tube_new = (new Tube(currentObjectID, UUIDs_copy, nodes, radius, colors, triangle_vertices, subdiv, texturefile.c_str(), this));
+
2670
+
2671 objects[currentObjectID] = tube_new;
+
2672
+
2673 }else if( type==OBJECT_TYPE_BOX ){
+
2674
+
2675 Box* o = getBoxObjectPointer( ObjID );
+
2676
+
2677 const vec3 &size = o->getSize();
+
2678 const int3 &subdiv = o->getSubdivisionCount();
2679
-
2680 Box* o = getBoxObjectPointer( ObjID );
+
2680 auto* box_new = (new Box(currentObjectID, UUIDs_copy, subdiv, texturefile.c_str(), this));
2681
-
2682 const vec3 &size = o->getSize();
-
2683 const int3 &subdiv = o->getSubdivisionCount();
-
2684
-
2685 auto* box_new = (new Box(currentObjectID, UUIDs_copy, subdiv, texturefile.c_str(), this));
-
2686
-
2687 objects[currentObjectID] = box_new;
-
2688
-
2689 }else if( type==OBJECT_TYPE_DISK ){
+
2682 objects[currentObjectID] = box_new;
+
2683
+
2684 }else if( type==OBJECT_TYPE_DISK ){
+
2685
+
2686 Disk* o = getDiskObjectPointer( ObjID );
+
2687
+
2688 const vec2 &size = o->getSize();
+
2689 const int2 &subdiv = o->getSubdivisionCount();
2690
-
2691 Disk* o = getDiskObjectPointer( ObjID );
+
2691 auto* disk_new = (new Disk(currentObjectID, UUIDs_copy, subdiv, texturefile.c_str(), this));
2692
-
2693 const vec2 &size = o->getSize();
-
2694 const int2 &subdiv = o->getSubdivisionCount();
-
2695
-
2696 auto* disk_new = (new Disk(currentObjectID, UUIDs_copy, subdiv, texturefile.c_str(), this));
-
2697
-
2698 objects[currentObjectID] = disk_new;
-
2699
-
2700 }else if( type==OBJECT_TYPE_POLYMESH ){
-
2701
-
2702 Polymesh* o = getPolymeshObjectPointer( ObjID );
-
2703
-
2704 auto* polymesh_new = (new Polymesh(currentObjectID, UUIDs_copy, texturefile.c_str(), this));
-
2705
-
2706 objects[currentObjectID] = polymesh_new;
-
2707
-
2708 }else if( type==OBJECT_TYPE_CONE ){
-
2709
-
2710 Cone* o = getConeObjectPointer( ObjID );
-
2711
-
2712 const std::vector<vec3> &nodes = o->getNodeCoordinates();
-
2713 const std::vector<float> &radius = o->getNodeRadii();
-
2714 uint subdiv = o->getSubdivisionCount();
-
2715
-
2716 auto* cone_new = (new Cone(currentObjectID, UUIDs_copy, nodes.at(0), nodes.at(1), radius.at(0), radius.at(1),subdiv, texturefile.c_str(), this));
-
2717
-
2718 objects[currentObjectID] = cone_new;
-
2719
-
2720 }
+
2693 objects[currentObjectID] = disk_new;
+
2694
+
2695 }else if( type==OBJECT_TYPE_POLYMESH ){
+
2696
+
2697 Polymesh* o = getPolymeshObjectPointer( ObjID );
+
2698
+
2699 auto* polymesh_new = (new Polymesh(currentObjectID, UUIDs_copy, texturefile.c_str(), this));
+
2700
+
2701 objects[currentObjectID] = polymesh_new;
+
2702
+
2703 }else if( type==OBJECT_TYPE_CONE ){
+
2704
+
2705 Cone* o = getConeObjectPointer( ObjID );
+
2706
+
2707 const std::vector<vec3> &nodes = o->getNodeCoordinates();
+
2708 const std::vector<float> &radius = o->getNodeRadii();
+
2709 uint subdiv = o->getSubdivisionCount();
+
2710
+
2711 auto* cone_new = (new Cone(currentObjectID, UUIDs_copy, nodes.at(0), nodes.at(1), radius.at(0), radius.at(1),subdiv, texturefile.c_str(), this));
+
2712
+
2713 objects[currentObjectID] = cone_new;
+
2714
+
2715 }
+
2716
+
2717 copyObjectData( ObjID, currentObjectID );
+
2718
+
2719 float T[16];
+
2720 getObjectPointer( ObjID )->getTransformationMatrix( T );
2721
-
2722 copyObjectData( ObjID, currentObjectID );
+
2722 getObjectPointer( currentObjectID )->setTransformationMatrix( T );
2723
-
2724 float T[16];
-
2725 getObjectPointer( ObjID )->getTransformationMatrix( T );
-
2726
-
2727 getObjectPointer( currentObjectID )->setTransformationMatrix( T );
-
2728
+
2724
+
2725 markGeometryDirty();
+
2726 currentObjectID++;
+
2727 return currentObjectID-1;
+
2728}
+
2729
-
2730 markGeometryDirty();
-
2731 currentObjectID++;
-
2732 return currentObjectID-1;
-
2733}
- -
2734
-
-
2735std::vector<uint> Context::filterObjectsByData( const std::vector<uint> &IDs, const char* object_data, float threshold, const char* comparator) const{
-
2736
-
2737 std::vector<uint> output_object_IDs;
-
2738 output_object_IDs.resize(IDs.size());
-
2739 uint passed_count=0;
+
+
2730std::vector<uint> Context::filterObjectsByData( const std::vector<uint> &IDs, const char* object_data, float threshold, const char* comparator) const{
+
2731
+
2732 std::vector<uint> output_object_IDs;
+
2733 output_object_IDs.resize(IDs.size());
+
2734 uint passed_count=0;
+
2735
+
2736 for(uint i=0;i<IDs.size();i++)
+
2737 {
+
2738
+
2739 if( doesObjectDataExist(IDs.at(i), object_data) ){
2740
-
2741 for(uint i=0;i<IDs.size();i++)
-
2742 {
-
2743
-
2744 if( doesObjectDataExist(IDs.at(i), object_data) ){
-
2745
-
2746 HeliosDataType type = getObjectDataType(IDs.at(i), object_data);
-
2747 if( type==HELIOS_TYPE_UINT ){
-
2748 uint R;
-
2749 getObjectData(IDs.at(i), object_data, R);
-
2750 if( strcmp(comparator,"<")==0 ){
-
2751 if( float(R)<threshold ){
+
2741 HeliosDataType type = getObjectDataType(IDs.at(i), object_data);
+
2742 if( type==HELIOS_TYPE_UINT ){
+
2743 uint R;
+
2744 getObjectData(IDs.at(i), object_data, R);
+
2745 if( strcmp(comparator,"<")==0 ){
+
2746 if( float(R)<threshold ){
+
2747 output_object_IDs.at(passed_count) = IDs.at(i);
+
2748 passed_count++;
+
2749 }
+
2750 }else if( strcmp(comparator,">")==0 ){
+
2751 if( float(R)>threshold ){
2752 output_object_IDs.at(passed_count) = IDs.at(i);
2753 passed_count++;
2754 }
-
2755 }else if( strcmp(comparator,">")==0 ){
-
2756 if( float(R)>threshold ){
+
2755 }else if( strcmp(comparator,"=")==0 ){
+
2756 if( float(R)==threshold ){
2757 output_object_IDs.at(passed_count) = IDs.at(i);
2758 passed_count++;
2759 }
-
2760 }else if( strcmp(comparator,"=")==0 ){
-
2761 if( float(R)==threshold ){
-
2762 output_object_IDs.at(passed_count) = IDs.at(i);
-
2763 passed_count++;
-
2764 }
-
2765 }
-
2766
-
2767 }else if(type==HELIOS_TYPE_FLOAT){
-
2768 float R;
-
2769 getObjectData(IDs.at(i), object_data, R);
-
2770
-
2771 if( strcmp(comparator,"<")==0 ){
-
2772 if( R<threshold ){
+
2760 }
+
2761
+
2762 }else if(type==HELIOS_TYPE_FLOAT){
+
2763 float R;
+
2764 getObjectData(IDs.at(i), object_data, R);
+
2765
+
2766 if( strcmp(comparator,"<")==0 ){
+
2767 if( R<threshold ){
+
2768 output_object_IDs.at(passed_count) = IDs.at(i);
+
2769 passed_count++;
+
2770 }
+
2771 }else if( strcmp(comparator,">")==0 ){
+
2772 if( R>threshold ){
2773 output_object_IDs.at(passed_count) = IDs.at(i);
2774 passed_count++;
2775 }
-
2776 }else if( strcmp(comparator,">")==0 ){
-
2777 if( R>threshold ){
+
2776 }else if( strcmp(comparator,"=")==0 ){
+
2777 if( R==threshold ){
2778 output_object_IDs.at(passed_count) = IDs.at(i);
2779 passed_count++;
2780 }
-
2781 }else if( strcmp(comparator,"=")==0 ){
-
2782 if( R==threshold ){
-
2783 output_object_IDs.at(passed_count) = IDs.at(i);
-
2784 passed_count++;
-
2785 }
-
2786 }
-
2787
-
2788 }else if(type==HELIOS_TYPE_INT){
-
2789 int R;
-
2790 getObjectData(IDs.at(i), object_data, R);
-
2791
-
2792 if( strcmp(comparator,"<")==0 ){
-
2793 if( float(R)<threshold ){
+
2781 }
+
2782
+
2783 }else if(type==HELIOS_TYPE_INT){
+
2784 int R;
+
2785 getObjectData(IDs.at(i), object_data, R);
+
2786
+
2787 if( strcmp(comparator,"<")==0 ){
+
2788 if( float(R)<threshold ){
+
2789 output_object_IDs.at(passed_count) = IDs.at(i);
+
2790 passed_count++;
+
2791 }
+
2792 }else if( strcmp(comparator,">")==0 ){
+
2793 if( float(R)>threshold ){
2794 output_object_IDs.at(passed_count) = IDs.at(i);
2795 passed_count++;
2796 }
-
2797 }else if( strcmp(comparator,">")==0 ){
-
2798 if( float(R)>threshold ){
+
2797 }else if( strcmp(comparator,"=")==0 ){
+
2798 if( float(R)==threshold ){
2799 output_object_IDs.at(passed_count) = IDs.at(i);
2800 passed_count++;
2801 }
-
2802 }else if( strcmp(comparator,"=")==0 ){
-
2803 if( float(R)==threshold ){
-
2804 output_object_IDs.at(passed_count) = IDs.at(i);
-
2805 passed_count++;
-
2806 }
-
2807 }
-
2808 }else{
-
2809 std::cerr << "WARNING: Object data not of type UINT, INT, or FLOAT. Filtering for other types not yet supported." << std::endl;
-
2810 }
-
2811
+
2802 }
+
2803 }else{
+
2804 std::cerr << "WARNING: Object data not of type UINT, INT, or FLOAT. Filtering for other types not yet supported." << std::endl;
+
2805 }
+
2806
+
2807
+
2808 }
+
2809 }
+
2810
+
2811 output_object_IDs.resize(passed_count);
2812
-
2813 }
-
2814 }
-
2815
-
2816 output_object_IDs.resize(passed_count);
-
2817
-
2818 return output_object_IDs;
-
2819
-
2820}
-
-
2821
-
-
2822void Context::translateObject(uint ObjID, const vec3& shift ){
-
2823 getObjectPointer(ObjID)->translate(shift);
-
2824}
-
-
2825
-
-
2826void Context::translateObject( const std::vector<uint>& ObjIDs, const vec3& shift ){
-
2827 for( uint ID : ObjIDs){
-
2828 getObjectPointer(ID)->translate(shift);
-
2829 }
-
2830}
-
-
2831
-
-
2832void Context::rotateObject(uint ObjID, float rotation_radians, const char* rotation_axis_xyz ){
-
2833 getObjectPointer(ObjID)->rotate(rotation_radians, rotation_axis_xyz);
-
2834}
-
-
2835
-
-
2836void Context::rotateObject(const std::vector<uint>& ObjIDs, float rotation_radians, const char* rotation_axis_xyz ){
-
2837 for( uint ID : ObjIDs){
-
2838 getObjectPointer(ID)->rotate(rotation_radians, rotation_axis_xyz);
-
2839 }
-
2840}
-
-
2841
-
-
2842void Context::rotateObject(uint ObjID, float rotation_radians, const vec3& rotation_axis_vector ){
-
2843 getObjectPointer(ObjID)->rotate(rotation_radians, rotation_axis_vector);
-
2844}
-
-
2845
-
-
2846void Context::rotateObject(const std::vector<uint>& ObjIDs, float rotation_radians, const vec3& rotation_axis_vector ){
-
2847 for( uint ID : ObjIDs){
-
2848 getObjectPointer(ID)->rotate(rotation_radians, rotation_axis_vector);
-
2849 }
-
2850}
-
-
2851
-
-
2852void Context::rotateObject(uint ObjID, float rotation_radians, const vec3& rotation_origin, const vec3& rotation_axis_vector ){
-
2853 getObjectPointer(ObjID)->rotate(rotation_radians, rotation_origin, rotation_axis_vector);
-
2854}
-
-
2855
-
-
2856void Context::rotateObject(const std::vector<uint>& ObjIDs, float rotation_radians, const vec3& rotation_origin, const vec3& rotation_axis_vector ){
-
2857 for( uint ID : ObjIDs){
-
2858 getObjectPointer(ID)->rotate(rotation_radians, rotation_origin, rotation_axis_vector);
-
2859 }
-
2860}
-
-
2861
-
-
2862void Context::scaleObject( uint ObjID, const helios::vec3 &scalefact ){
-
2863 getObjectPointer(ObjID)->scale(scalefact);
-
2864}
-
-
2865
-
-
2866void Context::scaleObject( const std::vector<uint>& ObjIDs, const helios::vec3 &scalefact ){
-
2867 for( uint ID : ObjIDs){
-
2868 getObjectPointer(ID)->scale(scalefact);
-
2869 }
-
2870}
-
-
2871
-
-
2872void Context::scaleObjectAboutCenter( uint ObjID, const helios::vec3 &scalefact ){
-
2873 getObjectPointer(ObjID)->scaleAboutCenter(scalefact);
-
2874}
-
-
2875
-
-
2876void Context::scaleObjectAboutCenter( const std::vector<uint>& ObjIDs, const helios::vec3 &scalefact ){
-
2877 for( uint ID : ObjIDs){
-
2878 getObjectPointer(ID)->scaleAboutCenter(scalefact);
-
2879 }
-
2880}
-
-
2881
-
-
2882void Context::scaleObjectAboutPoint( uint ObjID, const helios::vec3 &scalefact, const helios::vec3 &point ){
-
2883 getObjectPointer(ObjID)->scaleAboutPoint(scalefact, point);
-
2884}
-
-
2885
-
-
2886void Context::scaleObjectAboutPoint( const std::vector<uint>& ObjIDs, const helios::vec3 &scalefact, const helios::vec3 &point ){
-
2887 for( uint ID : ObjIDs){
-
2888 getObjectPointer(ID)->scaleAboutPoint(scalefact, point);
-
2889 }
-
2890}
-
+
2813 return output_object_IDs;
+
2814
+
2815}
+
+
2816
+
+
2817void Context::translateObject(uint ObjID, const vec3& shift ){
+
2818 getObjectPointer(ObjID)->translate(shift);
+
2819}
+
+
2820
+
+
2821void Context::translateObject( const std::vector<uint>& ObjIDs, const vec3& shift ){
+
2822 for( uint ID : ObjIDs){
+
2823 getObjectPointer(ID)->translate(shift);
+
2824 }
+
2825}
+
+
2826
+
+
2827void Context::rotateObject(uint ObjID, float rotation_radians, const char* rotation_axis_xyz ){
+
2828 getObjectPointer(ObjID)->rotate(rotation_radians, rotation_axis_xyz);
+
2829}
+
+
2830
+
+
2831void Context::rotateObject(const std::vector<uint>& ObjIDs, float rotation_radians, const char* rotation_axis_xyz ){
+
2832 for( uint ID : ObjIDs){
+
2833 getObjectPointer(ID)->rotate(rotation_radians, rotation_axis_xyz);
+
2834 }
+
2835}
+
+
2836
+
+
2837void Context::rotateObject(uint ObjID, float rotation_radians, const vec3& rotation_axis_vector ){
+
2838 getObjectPointer(ObjID)->rotate(rotation_radians, rotation_axis_vector);
+
2839}
+
+
2840
+
+
2841void Context::rotateObject(const std::vector<uint>& ObjIDs, float rotation_radians, const vec3& rotation_axis_vector ){
+
2842 for( uint ID : ObjIDs){
+
2843 getObjectPointer(ID)->rotate(rotation_radians, rotation_axis_vector);
+
2844 }
+
2845}
+
+
2846
+
+
2847void Context::rotateObject(uint ObjID, float rotation_radians, const vec3& rotation_origin, const vec3& rotation_axis_vector ){
+
2848 getObjectPointer(ObjID)->rotate(rotation_radians, rotation_origin, rotation_axis_vector);
+
2849}
+
+
2850
+
+
2851void Context::rotateObject(const std::vector<uint>& ObjIDs, float rotation_radians, const vec3& rotation_origin, const vec3& rotation_axis_vector ){
+
2852 for( uint ID : ObjIDs){
+
2853 getObjectPointer(ID)->rotate(rotation_radians, rotation_origin, rotation_axis_vector);
+
2854 }
+
2855}
+
+
2856
+
+
2857void Context::scaleObject( uint ObjID, const helios::vec3 &scalefact ){
+
2858 getObjectPointer(ObjID)->scale(scalefact);
+
2859}
+
+
2860
+
+
2861void Context::scaleObject( const std::vector<uint>& ObjIDs, const helios::vec3 &scalefact ){
+
2862 for( uint ID : ObjIDs){
+
2863 getObjectPointer(ID)->scale(scalefact);
+
2864 }
+
2865}
+
+
2866
+
+
2867void Context::scaleObjectAboutCenter( uint ObjID, const helios::vec3 &scalefact ){
+
2868 getObjectPointer(ObjID)->scaleAboutCenter(scalefact);
+
2869}
+
+
2870
+
+
2871void Context::scaleObjectAboutCenter( const std::vector<uint>& ObjIDs, const helios::vec3 &scalefact ){
+
2872 for( uint ID : ObjIDs){
+
2873 getObjectPointer(ID)->scaleAboutCenter(scalefact);
+
2874 }
+
2875}
+
+
2876
+
+
2877void Context::scaleObjectAboutPoint( uint ObjID, const helios::vec3 &scalefact, const helios::vec3 &point ){
+
2878 getObjectPointer(ObjID)->scaleAboutPoint(scalefact, point);
+
2879}
+
+
2880
+
+
2881void Context::scaleObjectAboutPoint( const std::vector<uint>& ObjIDs, const helios::vec3 &scalefact, const helios::vec3 &point ){
+
2882 for( uint ID : ObjIDs){
+
2883 getObjectPointer(ID)->scaleAboutPoint(scalefact, point);
+
2884 }
+
2885}
+
+
2886
+
+
2887std::vector<uint> Context::getObjectPrimitiveUUIDs( uint ObjID ) const{
+
2888
+
2889 const std::vector<uint> ObjIDs = {ObjID};
+
2890 return getObjectPrimitiveUUIDs(ObjIDs);
2891
-
-
2892std::vector<uint> Context::getObjectPrimitiveUUIDs( uint ObjID ) const{
+
2892}
+
2893
-
2894 const std::vector<uint> ObjIDs = {ObjID};
-
2895 return getObjectPrimitiveUUIDs(ObjIDs);
-
2896
-
2897}
-
-
2898
-
-
2899std::vector<uint> Context::getObjectPrimitiveUUIDs( const std::vector<uint> &ObjIDs ) const{
-
2900
-
2901 std::vector<uint> output_UUIDs;
-
2902
-
2903 for( uint ObjID : ObjIDs){
-
2904 CompoundObject* pointer = getObjectPointer(ObjID);
-
2905 const std::vector<uint> &current_UUIDs = pointer->getPrimitiveUUIDs();
-
2906 output_UUIDs.insert( output_UUIDs.end(), current_UUIDs.begin(), current_UUIDs.end() );
-
2907 }
-
2908 return output_UUIDs;
-
2909}
-
-
2910
-
-
2911std::vector<uint> Context::getObjectPrimitiveUUIDs( const std::vector<std::vector<uint> > &ObjIDs ) const{
-
2912
-
2913 std::vector<uint> output_UUIDs;
-
2914
-
2915 for( uint j=0; j<ObjIDs.size(); j++ ) {
-
2916 for (uint i = 0; i < ObjIDs.at(j).size(); i++) {
-
2917 CompoundObject *pointer = getObjectPointer(ObjIDs.at(j).at(i));
-
2918 const std::vector<uint> &current_UUIDs = pointer->getPrimitiveUUIDs();
-
2919 output_UUIDs.insert(output_UUIDs.end(), current_UUIDs.begin(), current_UUIDs.end());
-
2920 }
-
2921 }
-
2922 return output_UUIDs;
-
2923}
-
-
2924
-
-
2925helios::ObjectType Context::getObjectType( uint ObjID ) const{
-
2926 return getObjectPointer(ObjID)->getObjectType();
-
2927}
-
-
2928
-
-
2929float Context::getTileObjectAreaRatio(uint ObjectID) const{
-
2930
-
2931 if( getObjectPointer(ObjectID)->getObjectType() != OBJECT_TYPE_TILE )
-
2932 {
-
2933 std::cerr << "WARNING (Context::getTileObjectAreaRatio): ObjectID " << ObjectID<< " is not a tile object. Skipping..." << std::endl;
-
2934 return 0.0;
-
2935
-
2936 }else{
-
2937
-
2938 if(!(getObjectPointer(ObjectID)->arePrimitivesComplete())){
-
2939 std::cerr << "WARNING (Context::getTileObjectAreaRatio): ObjectID " << ObjectID << " is missing primitives. Area ratio calculated is area of non-missing subpatches divided by the area of an individual subpatch." << std::endl;
-
2940 }
-
2941
-
2942 const int2 &subdiv = getTileObjectPointer(ObjectID)->getSubdivisionCount();
-
2943 if(subdiv.x == int(1) && subdiv.y == int(1) )
-
2944 {
-
2945 return 1.0;
-
2946 }else{
-
2947 float area = getTileObjectPointer(ObjectID)->getArea();
-
2948 const vec2 &size = getTileObjectPointer(ObjectID)->getSize();
-
2949
-
2950 float subpatch_area = (size.x/float(subdiv.x))*(size.y/float(subdiv.y));
-
2951 return area/subpatch_area;
-
2952 }
-
2953
-
2954 }
-
2955}
-
-
2956
-
-
2957std::vector<float> Context::getTileObjectAreaRatio(const std::vector<uint> &ObjectIDs) const {
+
+
2894std::vector<uint> Context::getObjectPrimitiveUUIDs( const std::vector<uint> &ObjIDs ) const{
+
2895
+
2896 std::vector<uint> output_UUIDs;
+
2897
+
2898 for( uint ObjID : ObjIDs){
+
2899 CompoundObject* pointer = getObjectPointer(ObjID);
+
2900 const std::vector<uint> &current_UUIDs = pointer->getPrimitiveUUIDs();
+
2901 output_UUIDs.insert( output_UUIDs.end(), current_UUIDs.begin(), current_UUIDs.end() );
+
2902 }
+
2903 return output_UUIDs;
+
2904}
+
+
2905
+
+
2906std::vector<uint> Context::getObjectPrimitiveUUIDs( const std::vector<std::vector<uint> > &ObjIDs ) const{
+
2907
+
2908 std::vector<uint> output_UUIDs;
+
2909
+
2910 for( uint j=0; j<ObjIDs.size(); j++ ) {
+
2911 for (uint i = 0; i < ObjIDs.at(j).size(); i++) {
+
2912 CompoundObject *pointer = getObjectPointer(ObjIDs.at(j).at(i));
+
2913 const std::vector<uint> &current_UUIDs = pointer->getPrimitiveUUIDs();
+
2914 output_UUIDs.insert(output_UUIDs.end(), current_UUIDs.begin(), current_UUIDs.end());
+
2915 }
+
2916 }
+
2917 return output_UUIDs;
+
2918}
+
+
2919
+
+
2920helios::ObjectType Context::getObjectType( uint ObjID ) const{
+
2921 return getObjectPointer(ObjID)->getObjectType();
+
2922}
+
+
2923
+
+
2924float Context::getTileObjectAreaRatio(uint ObjectID) const{
+
2925
+
2926 if( getObjectPointer(ObjectID)->getObjectType() != OBJECT_TYPE_TILE )
+
2927 {
+
2928 std::cerr << "WARNING (Context::getTileObjectAreaRatio): ObjectID " << ObjectID<< " is not a tile object. Skipping..." << std::endl;
+
2929 return 0.0;
+
2930
+
2931 }else{
+
2932
+
2933 if(!(getObjectPointer(ObjectID)->arePrimitivesComplete())){
+
2934 std::cerr << "WARNING (Context::getTileObjectAreaRatio): ObjectID " << ObjectID << " is missing primitives. Area ratio calculated is area of non-missing subpatches divided by the area of an individual subpatch." << std::endl;
+
2935 }
+
2936
+
2937 const int2 &subdiv = getTileObjectPointer(ObjectID)->getSubdivisionCount();
+
2938 if(subdiv.x == int(1) && subdiv.y == int(1) )
+
2939 {
+
2940 return 1.0;
+
2941 }else{
+
2942 float area = getTileObjectPointer(ObjectID)->getArea();
+
2943 const vec2 &size = getTileObjectPointer(ObjectID)->getSize();
+
2944
+
2945 float subpatch_area = (size.x/float(subdiv.x))*(size.y/float(subdiv.y));
+
2946 return area/subpatch_area;
+
2947 }
+
2948
+
2949 }
+
2950}
+
+
2951
+
+
2952std::vector<float> Context::getTileObjectAreaRatio(const std::vector<uint> &ObjectIDs) const {
+
2953
+
2954 std::vector<float> AreaRatios(ObjectIDs.size());
+
2955 for( uint i=0; i<ObjectIDs.size(); i++ ){
+
2956 AreaRatios.at(i) = getTileObjectAreaRatio(ObjectIDs.at(i));
+
2957 }
2958
-
2959 std::vector<float> AreaRatios(ObjectIDs.size());
-
2960 for( uint i=0; i<ObjectIDs.size(); i++ ){
-
2961 AreaRatios.at(i) = getTileObjectAreaRatio(ObjectIDs.at(i));
-
2962 }
-
2963
-
2964 return AreaRatios;
-
2965}
-
-
2966
-
-
2967void Context::setTileObjectSubdivisionCount(const std::vector<uint> &ObjectIDs, const int2 &new_subdiv)
-
2968{
+
2959 return AreaRatios;
+
2960}
+
+
2961
+
+
2962void Context::setTileObjectSubdivisionCount(const std::vector<uint> &ObjectIDs, const int2 &new_subdiv)
+
2963{
+
2964
+
2965 //check that all objects are Tile Objects, and get vector of texture files
+
2966 std::vector<uint> tile_ObjectIDs;
+
2967 std::vector<uint> textured_tile_ObjectIDs;
+
2968
2969
-
2970 //check that all objects are Tile Objects, and get vector of texture files
-
2971 std::vector<uint> tile_ObjectIDs;
-
2972 std::vector<uint> textured_tile_ObjectIDs;
-
2973
-
2974
-
2975 std::vector<std::string> tex;
-
2976
-
2977 for(uint OBJID : ObjectIDs)
-
2978 {
-
2979
-
2980 //check if the object ID is a tile object and if it is add it the tile_ObjectIDs vector
-
2981 if( getObjectPointer(OBJID)->getObjectType() != OBJECT_TYPE_TILE )
-
2982 {
-
2983 std::cerr << "WARNING (Context::setTileObjectSubdivisionCount): ObjectID " << OBJID << " is not a tile object. Skipping..." << std::endl;
-
2984 }else if(!(getObjectPointer(OBJID)->arePrimitivesComplete())){
-
2985 std::cerr << "WARNING (Context::setTileObjectSubdivisionCount): ObjectID " << OBJID << " is missing primitives. Skipping..." << std::endl;
-
2986 }else{
-
2987 //test if the tile is textured and push into two different vectors
-
2988 Patch* p = getPatchPointer_private(getObjectPointer(OBJID)->getPrimitiveUUIDs().at(0));
-
2989 if( !p->hasTexture() ){ //no texture
-
2990 tile_ObjectIDs.push_back(OBJID);
-
2991 }else{ //texture
-
2992 textured_tile_ObjectIDs.push_back(OBJID);
-
2993 tex.push_back(p->getTextureFile() );
-
2994 }
-
2995 }
-
2996 }
-
2997
-
2998 //Here just call setSubdivisionCount directly for the non-textured tile objects
-
2999 for(unsigned int tile_ObjectID : tile_ObjectIDs){
-
3000
-
3001 Tile* current_object_pointer = getTileObjectPointer(tile_ObjectID);
-
3002 const std::vector<uint> &UUIDs_old = current_object_pointer->getPrimitiveUUIDs();
-
3003
-
3004 vec2 size = current_object_pointer->getSize();
-
3005 vec3 center = current_object_pointer->getCenter();
-
3006 vec3 normal = current_object_pointer->getNormal();
-
3007 SphericalCoord rotation = cart2sphere(normal);
-
3008 RGBcolor color = getPrimitiveColor(UUIDs_old.front());
-
3009
-
3010 std::vector<uint> UUIDs_new = addTile(center, size, rotation, new_subdiv, color );
-
3011
-
3012 for( uint UUID : UUIDs_new ) {
-
3013 getPrimitivePointer_private(UUID)->setParentObjectID(tile_ObjectID);
-
3014 }
-
3015
-
3016 current_object_pointer->setPrimitiveUUIDs(UUIDs_new);
-
3017 current_object_pointer->setSubdivisionCount(new_subdiv);
-
3018 deletePrimitive(UUIDs_old);
-
3019 }
-
3020
-
3021 // get a vector of unique texture files that are represented in the input tile objects
-
3022 sort(tex.begin(), tex.end());
-
3023 std::vector<std::string>::iterator it;
-
3024 it = std::unique(tex.begin(),tex.end());
-
3025 tex.resize( std::distance(tex.begin(),it) );
-
3026
-
3027 //create object templates for all the unique texture files
-
3028 std::vector<uint> object_templates;
-
3029 std::vector<std::vector<uint>> template_primitives;
-
3030 for(uint j=0;j<tex.size();j++)
-
3031 {
-
3032 //create a template object for the current texture
-
3033 uint object_template = addTileObject(make_vec3(0,0,0), make_vec2(1,1), nullrotation, new_subdiv, tex.at(j).c_str());
-
3034 object_templates.emplace_back(object_template);
-
3035 std::vector<uint> object_primitives = getTileObjectPointer(object_template)->getPrimitiveUUIDs();
-
3036 template_primitives.emplace_back(object_primitives);
-
3037 }
-
3038
-
3039 //keep loop over objects on the outside, otherwise need to update textured_tile_ObjectIDs vector all the time
-
3040 //for each textured tile object
-
3041 for(uint i=0;i<textured_tile_ObjectIDs.size();i++)
-
3042 {
-
3043 //get info from current object
-
3044 Tile* current_object_pointer = getTileObjectPointer(textured_tile_ObjectIDs.at(i));
-
3045 std::string current_texture_file = current_object_pointer->getTextureFile();
-
3046
-
3047 std::vector<uint> UUIDs_old = current_object_pointer->getPrimitiveUUIDs();
+
2970 std::vector<std::string> tex;
+
2971
+
2972 for(uint OBJID : ObjectIDs)
+
2973 {
+
2974
+
2975 //check if the object ID is a tile object and if it is add it the tile_ObjectIDs vector
+
2976 if( getObjectPointer(OBJID)->getObjectType() != OBJECT_TYPE_TILE )
+
2977 {
+
2978 std::cerr << "WARNING (Context::setTileObjectSubdivisionCount): ObjectID " << OBJID << " is not a tile object. Skipping..." << std::endl;
+
2979 }else if(!(getObjectPointer(OBJID)->arePrimitivesComplete())){
+
2980 std::cerr << "WARNING (Context::setTileObjectSubdivisionCount): ObjectID " << OBJID << " is missing primitives. Skipping..." << std::endl;
+
2981 }else{
+
2982 //test if the tile is textured and push into two different vectors
+
2983 Patch* p = getPatchPointer_private(getObjectPointer(OBJID)->getPrimitiveUUIDs().at(0));
+
2984 if( !p->hasTexture() ){ //no texture
+
2985 tile_ObjectIDs.push_back(OBJID);
+
2986 }else{ //texture
+
2987 textured_tile_ObjectIDs.push_back(OBJID);
+
2988 tex.push_back(p->getTextureFile() );
+
2989 }
+
2990 }
+
2991 }
+
2992
+
2993 //Here just call setSubdivisionCount directly for the non-textured tile objects
+
2994 for(unsigned int tile_ObjectID : tile_ObjectIDs){
+
2995
+
2996 Tile* current_object_pointer = getTileObjectPointer(tile_ObjectID);
+
2997 const std::vector<uint> &UUIDs_old = current_object_pointer->getPrimitiveUUIDs();
+
2998
+
2999 vec2 size = current_object_pointer->getSize();
+
3000 vec3 center = current_object_pointer->getCenter();
+
3001 vec3 normal = current_object_pointer->getNormal();
+
3002 SphericalCoord rotation = cart2sphere(normal);
+
3003 RGBcolor color = getPrimitiveColor(UUIDs_old.front());
+
3004
+
3005 std::vector<uint> UUIDs_new = addTile(center, size, rotation, new_subdiv, color );
+
3006
+
3007 for( uint UUID : UUIDs_new ) {
+
3008 getPrimitivePointer_private(UUID)->setParentObjectID(tile_ObjectID);
+
3009 }
+
3010
+
3011 current_object_pointer->setPrimitiveUUIDs(UUIDs_new);
+
3012 current_object_pointer->setSubdivisionCount(new_subdiv);
+
3013 deletePrimitive(UUIDs_old);
+
3014 }
+
3015
+
3016 // get a vector of unique texture files that are represented in the input tile objects
+
3017 sort(tex.begin(), tex.end());
+
3018 std::vector<std::string>::iterator it;
+
3019 it = std::unique(tex.begin(),tex.end());
+
3020 tex.resize( std::distance(tex.begin(),it) );
+
3021
+
3022 //create object templates for all the unique texture files
+
3023 std::vector<uint> object_templates;
+
3024 std::vector<std::vector<uint>> template_primitives;
+
3025 for(uint j=0;j<tex.size();j++)
+
3026 {
+
3027 //create a template object for the current texture
+
3028 uint object_template = addTileObject(make_vec3(0,0,0), make_vec2(1,1), nullrotation, new_subdiv, tex.at(j).c_str());
+
3029 object_templates.emplace_back(object_template);
+
3030 std::vector<uint> object_primitives = getTileObjectPointer(object_template)->getPrimitiveUUIDs();
+
3031 template_primitives.emplace_back(object_primitives);
+
3032 }
+
3033
+
3034 //keep loop over objects on the outside, otherwise need to update textured_tile_ObjectIDs vector all the time
+
3035 //for each textured tile object
+
3036 for(uint i=0;i<textured_tile_ObjectIDs.size();i++)
+
3037 {
+
3038 //get info from current object
+
3039 Tile* current_object_pointer = getTileObjectPointer(textured_tile_ObjectIDs.at(i));
+
3040 std::string current_texture_file = current_object_pointer->getTextureFile();
+
3041
+
3042 std::vector<uint> UUIDs_old = current_object_pointer->getPrimitiveUUIDs();
+
3043
+
3044 vec2 size = current_object_pointer->getSize();
+
3045 vec3 center = current_object_pointer->getCenter();
+
3046 vec3 normal = current_object_pointer->getNormal();
+
3047 SphericalCoord rotation = cart2sphere(normal);
3048
-
3049 vec2 size = current_object_pointer->getSize();
-
3050 vec3 center = current_object_pointer->getCenter();
-
3051 vec3 normal = current_object_pointer->getNormal();
-
3052 SphericalCoord rotation = cart2sphere(normal);
-
3053
-
3054 //for unique textures
-
3055 for(uint j=0;j<tex.size();j++)
-
3056 {
-
3057 //if the current tile object has the same texture file as the current unique texture file
-
3058 if(current_texture_file == tex.at(j))
-
3059 {
-
3060 //copy the template primitives and create a new tile with them
-
3061 std::vector<uint> new_primitives = copyPrimitive(template_primitives.at(j));
+
3049 //for unique textures
+
3050 for(uint j=0;j<tex.size();j++)
+
3051 {
+
3052 //if the current tile object has the same texture file as the current unique texture file
+
3053 if(current_texture_file == tex.at(j))
+
3054 {
+
3055 //copy the template primitives and create a new tile with them
+
3056 std::vector<uint> new_primitives = copyPrimitive(template_primitives.at(j));
+
3057
+
3058 // change the objectID for the new primitives
+
3059 setPrimitiveParentObjectID(new_primitives, textured_tile_ObjectIDs.at(i));
+
3060 current_object_pointer->setPrimitiveUUIDs(new_primitives);
+
3061 current_object_pointer->setSubdivisionCount(new_subdiv);
3062
-
3063 // change the objectID for the new primitives
-
3064 setPrimitiveParentObjectID(new_primitives, textured_tile_ObjectIDs.at(i));
-
3065 current_object_pointer->setPrimitiveUUIDs(new_primitives);
-
3066 current_object_pointer->setSubdivisionCount(new_subdiv);
-
3067
-
3068 //delete the original object primitives
-
3069 deletePrimitive(UUIDs_old);
-
3070
-
3071 float IM[16];
-
3072 makeIdentityMatrix(IM);
-
3073 current_object_pointer->setTransformationMatrix(IM);
-
3074
-
3075 current_object_pointer->scale(make_vec3(size.x, size.y, 1));
-
3076
-
3077 //transform based on original object data
-
3078 if( rotation.elevation!=0 ){
-
3079 current_object_pointer->rotate(-rotation.elevation , "x");
-
3080 }
-
3081 if( rotation.azimuth!=0 ){
-
3082 current_object_pointer->rotate(rotation.azimuth, "z");
-
3083 }
-
3084 current_object_pointer->translate(center);
-
3085
-
3086 }
-
3087 }
-
3088 }
-
3089
-
3090
-
3091 //delete the template (objects and primitives)
-
3092 deleteObject(object_templates);
+
3063 //delete the original object primitives
+
3064 deletePrimitive(UUIDs_old);
+
3065
+
3066 float IM[16];
+
3067 makeIdentityMatrix(IM);
+
3068 current_object_pointer->setTransformationMatrix(IM);
+
3069
+
3070 current_object_pointer->scale(make_vec3(size.x, size.y, 1));
+
3071
+
3072 //transform based on original object data
+
3073 if( rotation.elevation!=0 ){
+
3074 current_object_pointer->rotate(-rotation.elevation , "x");
+
3075 }
+
3076 if( rotation.azimuth!=0 ){
+
3077 current_object_pointer->rotate(rotation.azimuth, "z");
+
3078 }
+
3079 current_object_pointer->translate(center);
+
3080
+
3081 }
+
3082 }
+
3083 }
+
3084
+
3085
+
3086 //delete the template (objects and primitives)
+
3087 deleteObject(object_templates);
+
3088
+
3089}
+
+
3090
+
+
3091void Context::setTileObjectSubdivisionCount(const std::vector<uint> &ObjectIDs, float area_ratio)
+
3092{
3093
-
3094}
-
-
3095
-
-
3096void Context::setTileObjectSubdivisionCount(const std::vector<uint> &ObjectIDs, float area_ratio)
-
3097{
-
3098
-
3099 //check that all objects are Tile Objects, and get vector of texture files
-
3100 std::vector<uint> tile_ObjectIDs;
-
3101 std::vector<uint> textured_tile_ObjectIDs;
-
3102
-
3103 std::vector<std::string> tex;
-
3104 // for(uint i=1;i<ObjectIDs.size();i++)
-
3105 for(uint OBJID : ObjectIDs)
-
3106 {
-
3107 //check if the object ID is a tile object and if it is add it the tile_ObjectIDs vector
-
3108 if( getObjectPointer(OBJID)->getObjectType() != OBJECT_TYPE_TILE )
-
3109 {
-
3110 std::cerr << "WARNING (Context::setTileObjectSubdivisionCount): ObjectID " << OBJID << " is not a tile object. Skipping..." << std::endl;
-
3111 }else if(!(getObjectPointer(OBJID)->arePrimitivesComplete())){
-
3112 std::cerr << "WARNING (Context::setTileObjectSubdivisionCount): ObjectID " << OBJID << " is missing primitives. Skipping..." << std::endl;
-
3113 }else{
-
3114 //test if the tile is textured and push into two different vectors
-
3115 Patch* p = getPatchPointer_private(getObjectPointer(OBJID)->getPrimitiveUUIDs().at(0));
-
3116 if( !p->hasTexture() ){ //no texture
-
3117 tile_ObjectIDs.push_back(OBJID);
-
3118 }else{ //texture
-
3119 textured_tile_ObjectIDs.push_back(OBJID);
-
3120 tex.push_back(p->getTextureFile() );
-
3121 }
-
3122 }
-
3123 }
-
3124
-
3125 //Here just call setSubdivisionCount directly for the non-textured tile objects
-
3126 for(uint i=0;i<tile_ObjectIDs.size();i++)
-
3127 {
-
3128 Tile* current_object_pointer = getTileObjectPointer(tile_ObjectIDs.at(i));
-
3129 std::vector<uint> UUIDs_old = current_object_pointer->getPrimitiveUUIDs();
-
3130
-
3131 vec2 size = current_object_pointer->getSize();
-
3132 vec3 center = current_object_pointer->getCenter();
-
3133 vec3 normal = current_object_pointer->getNormal();
-
3134 SphericalCoord rotation = cart2sphere(normal);
-
3135 RGBcolor color = getPrimitiveColor(UUIDs_old.front());
-
3136
-
3137 float tile_area = current_object_pointer->getArea();
+
3094 //check that all objects are Tile Objects, and get vector of texture files
+
3095 std::vector<uint> tile_ObjectIDs;
+
3096 std::vector<uint> textured_tile_ObjectIDs;
+
3097
+
3098 std::vector<std::string> tex;
+
3099 // for(uint i=1;i<ObjectIDs.size();i++)
+
3100 for(uint OBJID : ObjectIDs)
+
3101 {
+
3102 //check if the object ID is a tile object and if it is add it the tile_ObjectIDs vector
+
3103 if( getObjectPointer(OBJID)->getObjectType() != OBJECT_TYPE_TILE )
+
3104 {
+
3105 std::cerr << "WARNING (Context::setTileObjectSubdivisionCount): ObjectID " << OBJID << " is not a tile object. Skipping..." << std::endl;
+
3106 }else if(!(getObjectPointer(OBJID)->arePrimitivesComplete())){
+
3107 std::cerr << "WARNING (Context::setTileObjectSubdivisionCount): ObjectID " << OBJID << " is missing primitives. Skipping..." << std::endl;
+
3108 }else{
+
3109 //test if the tile is textured and push into two different vectors
+
3110 Patch* p = getPatchPointer_private(getObjectPointer(OBJID)->getPrimitiveUUIDs().at(0));
+
3111 if( !p->hasTexture() ){ //no texture
+
3112 tile_ObjectIDs.push_back(OBJID);
+
3113 }else{ //texture
+
3114 textured_tile_ObjectIDs.push_back(OBJID);
+
3115 tex.push_back(p->getTextureFile() );
+
3116 }
+
3117 }
+
3118 }
+
3119
+
3120 //Here just call setSubdivisionCount directly for the non-textured tile objects
+
3121 for(uint i=0;i<tile_ObjectIDs.size();i++)
+
3122 {
+
3123 Tile* current_object_pointer = getTileObjectPointer(tile_ObjectIDs.at(i));
+
3124 std::vector<uint> UUIDs_old = current_object_pointer->getPrimitiveUUIDs();
+
3125
+
3126 vec2 size = current_object_pointer->getSize();
+
3127 vec3 center = current_object_pointer->getCenter();
+
3128 vec3 normal = current_object_pointer->getNormal();
+
3129 SphericalCoord rotation = cart2sphere(normal);
+
3130 RGBcolor color = getPrimitiveColor(UUIDs_old.front());
+
3131
+
3132 float tile_area = current_object_pointer->getArea();
+
3133
+
3134 // subpatch dimensions needed to keep the correct ratio and have the solid fraction area = the input area
+
3135 float subpatch_dimension = sqrtf( tile_area / area_ratio);
+
3136 float subpatch_per_x = size.x / subpatch_dimension;
+
3137 float subpatch_per_y = size.y / subpatch_dimension;
3138
-
3139 // subpatch dimensions needed to keep the correct ratio and have the solid fraction area = the input area
-
3140 float subpatch_dimension = sqrtf( tile_area / area_ratio);
-
3141 float subpatch_per_x = size.x / subpatch_dimension;
-
3142 float subpatch_per_y = size.y / subpatch_dimension;
-
3143
-
3144 float option_1_AR = (tile_area / (size.x / ceil(subpatch_per_x) * size.y / floor(subpatch_per_y))) - area_ratio;
-
3145 float option_2_AR = (tile_area / (size.x / floor(subpatch_per_x) * size.y / ceil(subpatch_per_y))) - area_ratio;
-
3146
-
3147 int2 new_subdiv;
-
3148 if((int)area_ratio == 1){
-
3149 new_subdiv = make_int2(1, 1);
-
3150 }else if(option_1_AR >= option_2_AR){
-
3151 new_subdiv = make_int2(ceil(subpatch_per_x), floor(subpatch_per_y));
-
3152 }else{
-
3153 new_subdiv = make_int2(floor(subpatch_per_x), ceil(subpatch_per_y));
-
3154 }
-
3155
-
3156
-
3157 std::vector<uint> UUIDs_new = addTile(center, size, rotation, new_subdiv, color );
-
3158
-
3159 for( uint UUID : UUIDs_new ) {
-
3160 getPrimitivePointer_private(UUID)->setParentObjectID(tile_ObjectIDs.at(i));
-
3161 }
-
3162
-
3163 current_object_pointer->setPrimitiveUUIDs(UUIDs_new);
-
3164 current_object_pointer->setSubdivisionCount(new_subdiv);
-
3165 deletePrimitive(UUIDs_old);
-
3166 }
-
3167
-
3168 // get a vector of unique texture files that are represented in the input tile objects
-
3169 sort(tex.begin(), tex.end());
-
3170 std::vector<std::string>::iterator it;
-
3171 it = std::unique(tex.begin(),tex.end());
-
3172 tex.resize( std::distance(tex.begin(),it) );
-
3173
-
3174 //create object templates for all the unique texture files
-
3175 // the assumption here is that all tile objects with the same texture have the same aspect ratio
-
3176 //if this is not true then the copying method won't work well because a new template will need to be created for each texture/aspect ratio combination
-
3177
-
3178 std::vector<uint> object_templates;
-
3179 std::vector<std::vector<uint>> template_primitives;
-
3180 for(uint j=0;j<tex.size();j++)
-
3181 {
-
3182 //here we just want to get one tile object with the matching texture
-
3183 uint ii;
-
3184 for(uint i=0;i<textured_tile_ObjectIDs.size();i++)
-
3185 {
-
3186 //get info from current object
-
3187 Tile* current_object_pointer_b = getTileObjectPointer(textured_tile_ObjectIDs.at(i));
-
3188 std::string current_texture_file_b = current_object_pointer_b->getTextureFile();
-
3189 //if the current tile object has the same texture file as the current unique texture file
-
3190 if(current_texture_file_b == tex.at(j))
-
3191 {
-
3192 ii=i;
-
3193 break;
-
3194 }
-
3195 }
+
3139 float option_1_AR = (tile_area / (size.x / ceil(subpatch_per_x) * size.y / floor(subpatch_per_y))) - area_ratio;
+
3140 float option_2_AR = (tile_area / (size.x / floor(subpatch_per_x) * size.y / ceil(subpatch_per_y))) - area_ratio;
+
3141
+
3142 int2 new_subdiv;
+
3143 if((int)area_ratio == 1){
+
3144 new_subdiv = make_int2(1, 1);
+
3145 }else if(option_1_AR >= option_2_AR){
+
3146 new_subdiv = make_int2(ceil(subpatch_per_x), floor(subpatch_per_y));
+
3147 }else{
+
3148 new_subdiv = make_int2(floor(subpatch_per_x), ceil(subpatch_per_y));
+
3149 }
+
3150
+
3151
+
3152 std::vector<uint> UUIDs_new = addTile(center, size, rotation, new_subdiv, color );
+
3153
+
3154 for( uint UUID : UUIDs_new ) {
+
3155 getPrimitivePointer_private(UUID)->setParentObjectID(tile_ObjectIDs.at(i));
+
3156 }
+
3157
+
3158 current_object_pointer->setPrimitiveUUIDs(UUIDs_new);
+
3159 current_object_pointer->setSubdivisionCount(new_subdiv);
+
3160 deletePrimitive(UUIDs_old);
+
3161 }
+
3162
+
3163 // get a vector of unique texture files that are represented in the input tile objects
+
3164 sort(tex.begin(), tex.end());
+
3165 std::vector<std::string>::iterator it;
+
3166 it = std::unique(tex.begin(),tex.end());
+
3167 tex.resize( std::distance(tex.begin(),it) );
+
3168
+
3169 //create object templates for all the unique texture files
+
3170 // the assumption here is that all tile objects with the same texture have the same aspect ratio
+
3171 //if this is not true then the copying method won't work well because a new template will need to be created for each texture/aspect ratio combination
+
3172
+
3173 std::vector<uint> object_templates;
+
3174 std::vector<std::vector<uint>> template_primitives;
+
3175 for(uint j=0;j<tex.size();j++)
+
3176 {
+
3177 //here we just want to get one tile object with the matching texture
+
3178 uint ii;
+
3179 for(uint i=0;i<textured_tile_ObjectIDs.size();i++)
+
3180 {
+
3181 //get info from current object
+
3182 Tile* current_object_pointer_b = getTileObjectPointer(textured_tile_ObjectIDs.at(i));
+
3183 std::string current_texture_file_b = current_object_pointer_b->getTextureFile();
+
3184 //if the current tile object has the same texture file as the current unique texture file
+
3185 if(current_texture_file_b == tex.at(j))
+
3186 {
+
3187 ii=i;
+
3188 break;
+
3189 }
+
3190 }
+
3191
+
3192 //get info from current object
+
3193 Tile* current_object_pointer = getTileObjectPointer(textured_tile_ObjectIDs.at(ii));
+
3194 vec2 tile_size = current_object_pointer->getSize();
+
3195 float tile_area = current_object_pointer->getArea();
3196
-
3197 //get info from current object
-
3198 Tile* current_object_pointer = getTileObjectPointer(textured_tile_ObjectIDs.at(ii));
-
3199 vec2 tile_size = current_object_pointer->getSize();
-
3200 float tile_area = current_object_pointer->getArea();
+
3197 // subpatch dimensions needed to keep the correct ratio and have the solid fraction area = the input area
+
3198 float subpatch_dimension = sqrtf( tile_area / area_ratio);
+
3199 float subpatch_per_x = tile_size.x / subpatch_dimension;
+
3200 float subpatch_per_y = tile_size.y / subpatch_dimension;
3201
-
3202 // subpatch dimensions needed to keep the correct ratio and have the solid fraction area = the input area
-
3203 float subpatch_dimension = sqrtf( tile_area / area_ratio);
-
3204 float subpatch_per_x = tile_size.x / subpatch_dimension;
-
3205 float subpatch_per_y = tile_size.y / subpatch_dimension;
-
3206
-
3207 float option_1_AR = (tile_area / (tile_size.x / ceil(subpatch_per_x) * tile_size.y / floor(subpatch_per_y))) - area_ratio;
-
3208 float option_2_AR = (tile_area / (tile_size.x / floor(subpatch_per_x) * tile_size.y / ceil(subpatch_per_y))) - area_ratio;
-
3209
-
3210 int2 new_subdiv;
-
3211 if((int)area_ratio == 1){
-
3212 new_subdiv = make_int2(1, 1);
-
3213 }else if(option_1_AR >= option_2_AR){
-
3214 new_subdiv = make_int2(ceil(subpatch_per_x), floor(subpatch_per_y));
-
3215 }else{
-
3216 new_subdiv = make_int2(floor(subpatch_per_x), ceil(subpatch_per_y));
-
3217 }
-
3218
-
3219 //create a template object for the current texture
-
3220 uint object_template = addTileObject(make_vec3(0,0,0), make_vec2(1,1), nullrotation, new_subdiv, tex.at(j).c_str());
-
3221 object_templates.emplace_back(object_template);
-
3222 std::vector<uint> object_primitives = getTileObjectPointer(object_template)->getPrimitiveUUIDs();
-
3223 template_primitives.emplace_back(object_primitives);
-
3224 }
-
3225
-
3226 //keep loop over objects on the outside, otherwise need to update textured_tile_ObjectIDs vector all the time
-
3227 //for each textured tile object
-
3228 for(uint i=0;i<textured_tile_ObjectIDs.size();i++)
-
3229 {
-
3230 //get info from current object
-
3231 Tile* current_object_pointer = getTileObjectPointer(textured_tile_ObjectIDs.at(i));
-
3232 // std::string current_texture_file = getPrimitivePointer_private(current_object_pointer->getPrimitiveUUIDs().at(0))->getTextureFile();
-
3233 std::string current_texture_file = current_object_pointer->getTextureFile();
-
3234 // std::cout << "current_texture_file for ObjID " << textured_tile_ObjectIDs.at(i) << " = " << current_texture_file << std::endl;
-
3235 std::vector<uint> UUIDs_old = current_object_pointer->getPrimitiveUUIDs();
+
3202 float option_1_AR = (tile_area / (tile_size.x / ceil(subpatch_per_x) * tile_size.y / floor(subpatch_per_y))) - area_ratio;
+
3203 float option_2_AR = (tile_area / (tile_size.x / floor(subpatch_per_x) * tile_size.y / ceil(subpatch_per_y))) - area_ratio;
+
3204
+
3205 int2 new_subdiv;
+
3206 if((int)area_ratio == 1){
+
3207 new_subdiv = make_int2(1, 1);
+
3208 }else if(option_1_AR >= option_2_AR){
+
3209 new_subdiv = make_int2(ceil(subpatch_per_x), floor(subpatch_per_y));
+
3210 }else{
+
3211 new_subdiv = make_int2(floor(subpatch_per_x), ceil(subpatch_per_y));
+
3212 }
+
3213
+
3214 //create a template object for the current texture
+
3215 uint object_template = addTileObject(make_vec3(0,0,0), make_vec2(1,1), nullrotation, new_subdiv, tex.at(j).c_str());
+
3216 object_templates.emplace_back(object_template);
+
3217 std::vector<uint> object_primitives = getTileObjectPointer(object_template)->getPrimitiveUUIDs();
+
3218 template_primitives.emplace_back(object_primitives);
+
3219 }
+
3220
+
3221 //keep loop over objects on the outside, otherwise need to update textured_tile_ObjectIDs vector all the time
+
3222 //for each textured tile object
+
3223 for(uint i=0;i<textured_tile_ObjectIDs.size();i++)
+
3224 {
+
3225 //get info from current object
+
3226 Tile* current_object_pointer = getTileObjectPointer(textured_tile_ObjectIDs.at(i));
+
3227 // std::string current_texture_file = getPrimitivePointer_private(current_object_pointer->getPrimitiveUUIDs().at(0))->getTextureFile();
+
3228 std::string current_texture_file = current_object_pointer->getTextureFile();
+
3229 // std::cout << "current_texture_file for ObjID " << textured_tile_ObjectIDs.at(i) << " = " << current_texture_file << std::endl;
+
3230 std::vector<uint> UUIDs_old = current_object_pointer->getPrimitiveUUIDs();
+
3231
+
3232 vec2 size = current_object_pointer->getSize();
+
3233 vec3 center = current_object_pointer->getCenter();
+
3234 vec3 normal = current_object_pointer->getNormal();
+
3235 SphericalCoord rotation = cart2sphere(normal);
3236
-
3237 vec2 size = current_object_pointer->getSize();
-
3238 vec3 center = current_object_pointer->getCenter();
-
3239 vec3 normal = current_object_pointer->getNormal();
-
3240 SphericalCoord rotation = cart2sphere(normal);
-
3241
-
3242 //for unique textures
-
3243 for(uint j=0;j<tex.size();j++)
-
3244 {
-
3245 //if the current tile object has the same texture file as the current unique texture file
-
3246 if(current_texture_file == tex.at(j))
-
3247 {
-
3248 //copy the template primitives and create a new tile with them
-
3249 std::vector<uint> new_primitives = copyPrimitive(template_primitives.at(j));
-
3250
-
3251 // change the objectID for the new primitives
-
3252 setPrimitiveParentObjectID(new_primitives, textured_tile_ObjectIDs.at(i));
-
3253
-
3254 int2 new_subdiv = getTileObjectPointer(object_templates.at(j))->getSubdivisionCount();
-
3255 current_object_pointer->setPrimitiveUUIDs(new_primitives);
-
3256 current_object_pointer->setSubdivisionCount(new_subdiv);
-
3257
-
3258 //delete the original object primitives
-
3259 deletePrimitive(UUIDs_old);
-
3260
-
3261 float IM[16];
-
3262 makeIdentityMatrix(IM);
-
3263 current_object_pointer->setTransformationMatrix(IM);
-
3264
-
3265 current_object_pointer->scale(make_vec3(size.x, size.y, 1));
-
3266
-
3267 if( rotation.elevation!=0 ){
-
3268 current_object_pointer->rotate(-rotation.elevation , "x");
-
3269 }
-
3270 if( rotation.azimuth!=0 ){
-
3271 current_object_pointer->rotate(rotation.azimuth, "z");
-
3272 }
-
3273 current_object_pointer->translate(center);
-
3274
-
3275 }
-
3276 }
-
3277 }
-
3278
-
3279 //delete the template (objects and primitives)
-
3280 deleteObject(object_templates);
-
3281
-
3282}
-
-
3283
-
-
3284Tile::Tile(uint a_OID, const std::vector<uint> &a_UUIDs, const int2 &a_subdiv, const char *a_texturefile, helios::Context *a_context) {
-
3285
-
3286 makeIdentityMatrix( transform );
-
3287
-
3288 OID = a_OID;
-
3289 type = helios::OBJECT_TYPE_TILE;
-
3290 UUIDs = a_UUIDs;
-
3291 subdiv = a_subdiv;
-
3292 texturefile = a_texturefile;
-
3293 context = a_context;
-
3294
-
3295}
-
-
3296
-
-
3297Tile* Context::getTileObjectPointer(uint ObjID ) const{
-
3298 if( objects.find(ObjID) == objects.end() ){
-
3299 helios_runtime_error("ERROR (Context::getTileObjectPointer): ObjectID of " + std::to_string(ObjID) + " does not exist in the Context.");
-
3300 }
-
3301 return dynamic_cast<Tile*>(objects.at(ObjID));
-
3302}
-
-
3303
-
-
3304helios::vec2 Tile::getSize() const{
-
3305 const std::vector<vec3> &vertices = getVertices();
-
3306 float l = (vertices.at(1)-vertices.at(0)).magnitude();
-
3307 float w = (vertices.at(3)-vertices.at(0)).magnitude();
-
3308 return make_vec2(l,w);
-
3309}
-
-
3310
-
-
3311vec3 Tile::getCenter() const{
-
3312
-
3313 vec3 center;
-
3314 vec3 Y;
-
3315 Y.x = 0.f;
-
3316 Y.y = 0.f;
-
3317 Y.z = 0.f;
-
3318
-
3319 center.x = transform[0] * Y.x + transform[1] * Y.y + transform[2] * Y.z + transform[3];
-
3320 center.y = transform[4] * Y.x + transform[5] * Y.y + transform[6] * Y.z + transform[7];
-
3321 center.z = transform[8] * Y.x + transform[9] * Y.y + transform[10] * Y.z + transform[11];
+
3237 //for unique textures
+
3238 for(uint j=0;j<tex.size();j++)
+
3239 {
+
3240 //if the current tile object has the same texture file as the current unique texture file
+
3241 if(current_texture_file == tex.at(j))
+
3242 {
+
3243 //copy the template primitives and create a new tile with them
+
3244 std::vector<uint> new_primitives = copyPrimitive(template_primitives.at(j));
+
3245
+
3246 // change the objectID for the new primitives
+
3247 setPrimitiveParentObjectID(new_primitives, textured_tile_ObjectIDs.at(i));
+
3248
+
3249 int2 new_subdiv = getTileObjectPointer(object_templates.at(j))->getSubdivisionCount();
+
3250 current_object_pointer->setPrimitiveUUIDs(new_primitives);
+
3251 current_object_pointer->setSubdivisionCount(new_subdiv);
+
3252
+
3253 //delete the original object primitives
+
3254 deletePrimitive(UUIDs_old);
+
3255
+
3256 float IM[16];
+
3257 makeIdentityMatrix(IM);
+
3258 current_object_pointer->setTransformationMatrix(IM);
+
3259
+
3260 current_object_pointer->scale(make_vec3(size.x, size.y, 1));
+
3261
+
3262 if( rotation.elevation!=0 ){
+
3263 current_object_pointer->rotate(-rotation.elevation , "x");
+
3264 }
+
3265 if( rotation.azimuth!=0 ){
+
3266 current_object_pointer->rotate(rotation.azimuth, "z");
+
3267 }
+
3268 current_object_pointer->translate(center);
+
3269
+
3270 }
+
3271 }
+
3272 }
+
3273
+
3274 //delete the template (objects and primitives)
+
3275 deleteObject(object_templates);
+
3276
+
3277}
+
+
3278
+
+
3279Tile::Tile(uint a_OID, const std::vector<uint> &a_UUIDs, const int2 &a_subdiv, const char *a_texturefile, helios::Context *a_context) {
+
3280
+
3281 makeIdentityMatrix( transform );
+
3282
+
3283 OID = a_OID;
+
3284 type = helios::OBJECT_TYPE_TILE;
+
3285 UUIDs = a_UUIDs;
+
3286 subdiv = a_subdiv;
+
3287 texturefile = a_texturefile;
+
3288 context = a_context;
+
3289
+
3290}
+
+
3291
+
+
3292Tile* Context::getTileObjectPointer(uint ObjID ) const{
+
3293 if( objects.find(ObjID) == objects.end() ){
+
3294 helios_runtime_error("ERROR (Context::getTileObjectPointer): ObjectID of " + std::to_string(ObjID) + " does not exist in the Context.");
+
3295 }
+
3296 return dynamic_cast<Tile*>(objects.at(ObjID));
+
3297}
+
+
3298
+
+
3299helios::vec2 Tile::getSize() const{
+
3300 const std::vector<vec3> &vertices = getVertices();
+
3301 float l = (vertices.at(1)-vertices.at(0)).magnitude();
+
3302 float w = (vertices.at(3)-vertices.at(0)).magnitude();
+
3303 return make_vec2(l,w);
+
3304}
+
+
3305
+
+
3306vec3 Tile::getCenter() const{
+
3307
+
3308 vec3 center;
+
3309 vec3 Y;
+
3310 Y.x = 0.f;
+
3311 Y.y = 0.f;
+
3312 Y.z = 0.f;
+
3313
+
3314 center.x = transform[0] * Y.x + transform[1] * Y.y + transform[2] * Y.z + transform[3];
+
3315 center.y = transform[4] * Y.x + transform[5] * Y.y + transform[6] * Y.z + transform[7];
+
3316 center.z = transform[8] * Y.x + transform[9] * Y.y + transform[10] * Y.z + transform[11];
+
3317
+
3318 return center;
+
3319
+
3320}
+
+
3321
3322
-
3323 return center;
-
3324
+
+
3323helios::int2 Tile::getSubdivisionCount() const{
+
3324 return subdiv;
3325}
3326
-
3327
-
-
3328helios::int2 Tile::getSubdivisionCount() const{
-
3329 return subdiv;
-
3330}
+
+
3327void Tile::setSubdivisionCount( const helios::int2 &a_subdiv ){
+
3328 subdiv = a_subdiv;
+
3329}
+
3330
3331
-
3332void Tile::setSubdivisionCount( const helios::int2 &a_subdiv ){
-
3333 subdiv = a_subdiv;
-
3334}
-
-
3335
-
3336
-
-
3337std::vector<helios::vec3> Tile::getVertices() const{
-
3338
-
3339 std::vector<helios::vec3> vertices;
-
3340 vertices.resize(4);
-
3341
-
3342 //subcenter = make_vec3(-0.5*size.x+(float(i)+0.5)*subsize.x,-0.5*size.y+(float(j)+0.5)*subsize.y,0);
-
3343 //Y[0] = make_vec3( -0.5f, -0.5f, 0.f);
-
3344 //Y[1] = make_vec3( 0.5f, -0.5f, 0.f);
-
3345 //Y[2] = make_vec3( 0.5f, 0.5f, 0.f);
-
3346 //Y[3] = make_vec3( -0.5f, 0.5f, 0.f);
-
3347
-
3348
-
3349 vec3 Y[4];
-
3350 Y[0] = make_vec3( -0.5f, -0.5f, 0.f);
-
3351 Y[1] = make_vec3( 0.5f, -0.5f, 0.f);
-
3352 Y[2] = make_vec3( 0.5f, 0.5f, 0.f);
-
3353 Y[3] = make_vec3( -0.5f, 0.5f, 0.f);
-
3354
-
3355 for( int i=0; i<4; i++ ){
-
3356 vertices[i].x = transform[0] * Y[i].x + transform[1] * Y[i].y + transform[2] * Y[i].z + transform[3];
-
3357 vertices[i].y = transform[4] * Y[i].x + transform[5] * Y[i].y + transform[6] * Y[i].z + transform[7];
-
3358 vertices[i].z = transform[8] * Y[i].x + transform[9] * Y[i].y + transform[10] * Y[i].z + transform[11];
-
3359 }
+
3332std::vector<helios::vec3> Tile::getVertices() const{
+
3333
+
3334 std::vector<helios::vec3> vertices;
+
3335 vertices.resize(4);
+
3336
+
3337 //subcenter = make_vec3(-0.5*size.x+(float(i)+0.5)*subsize.x,-0.5*size.y+(float(j)+0.5)*subsize.y,0);
+
3338 //Y[0] = make_vec3( -0.5f, -0.5f, 0.f);
+
3339 //Y[1] = make_vec3( 0.5f, -0.5f, 0.f);
+
3340 //Y[2] = make_vec3( 0.5f, 0.5f, 0.f);
+
3341 //Y[3] = make_vec3( -0.5f, 0.5f, 0.f);
+
3342
+
3343
+
3344 vec3 Y[4];
+
3345 Y[0] = make_vec3( -0.5f, -0.5f, 0.f);
+
3346 Y[1] = make_vec3( 0.5f, -0.5f, 0.f);
+
3347 Y[2] = make_vec3( 0.5f, 0.5f, 0.f);
+
3348 Y[3] = make_vec3( -0.5f, 0.5f, 0.f);
+
3349
+
3350 for( int i=0; i<4; i++ ){
+
3351 vertices[i].x = transform[0] * Y[i].x + transform[1] * Y[i].y + transform[2] * Y[i].z + transform[3];
+
3352 vertices[i].y = transform[4] * Y[i].x + transform[5] * Y[i].y + transform[6] * Y[i].z + transform[7];
+
3353 vertices[i].z = transform[8] * Y[i].x + transform[9] * Y[i].y + transform[10] * Y[i].z + transform[11];
+
3354 }
+
3355
+
3356 // vertices.at(0) = context->getPrimitiveVertices( UUIDs.front() ).at(0);
+
3357 // vertices.at(1) = context->getPrimitiveVertices( UUIDs.at( subdiv.x-1 ) ).at(1);
+
3358 // vertices.at(2) = context->getPrimitiveVertices( UUIDs.at( subdiv.x*subdiv.y-1 ) ).at(2);
+
3359 // vertices.at(3) = context->getPrimitiveVertices( UUIDs.at( subdiv.x*subdiv.y-subdiv.x ) ).at(3);
3360
-
3361 // vertices.at(0) = context->getPrimitiveVertices( UUIDs.front() ).at(0);
-
3362 // vertices.at(1) = context->getPrimitiveVertices( UUIDs.at( subdiv.x-1 ) ).at(1);
-
3363 // vertices.at(2) = context->getPrimitiveVertices( UUIDs.at( subdiv.x*subdiv.y-1 ) ).at(2);
-
3364 // vertices.at(3) = context->getPrimitiveVertices( UUIDs.at( subdiv.x*subdiv.y-subdiv.x ) ).at(3);
-
3365
-
3366 return vertices;
-
3367
-
3368}
-
-
3369
-
-
3370vec3 Tile::getNormal() const{
-
3371
-
3372 return context->getPrimitiveNormal( UUIDs.front() );
-
3373
-
3374}
-
-
3375
-
-
3376std::vector<helios::vec2> Tile::getTextureUV() const{
-
3377
-
3378 return { make_vec2(0,0), make_vec2(1,0), make_vec2(1,1), make_vec2(0,1) };
-
3379
-
3380}
-
-
3381
-
-
3382Sphere::Sphere(uint a_OID, const std::vector<uint> &a_UUIDs, uint a_subdiv, const char *a_texturefile, helios::Context *a_context) {
-
3383
-
3384 makeIdentityMatrix( transform );
-
3385
-
3386 OID = a_OID;
-
3387 type = helios::OBJECT_TYPE_SPHERE;
-
3388 UUIDs = a_UUIDs;
-
3389 subdiv = a_subdiv;
-
3390 texturefile = a_texturefile;
-
3391 context = a_context;
-
3392
-
3393}
-
-
3394
-
-
3395Sphere* Context::getSphereObjectPointer(uint ObjID ) const{
-
3396 if( objects.find(ObjID) == objects.end() ){
-
3397 helios_runtime_error("ERROR (Context::getSphereObjectPointer): ObjectID of " + std::to_string(ObjID) + " does not exist in the Context.");
-
3398 }
-
3399 return dynamic_cast<Sphere*>(objects.at(ObjID));
-
3400}
-
-
3401
-
-
3402helios::vec3 Sphere::getRadius() const{
-
3403
-
3404 vec3 n0(0,0,0);
-
3405 vec3 nx(1,0,0);
-
3406 vec3 ny(0,1,0);
-
3407 vec3 nz(0,0,1);
-
3408 vec3 n0_T, nx_T, ny_T, nz_T;
+
3361 return vertices;
+
3362
+
3363}
+
+
3364
+
+
3365vec3 Tile::getNormal() const{
+
3366
+
3367 return context->getPrimitiveNormal( UUIDs.front() );
+
3368
+
3369}
+
+
3370
+
+
3371std::vector<helios::vec2> Tile::getTextureUV() const{
+
3372
+
3373 return { make_vec2(0,0), make_vec2(1,0), make_vec2(1,1), make_vec2(0,1) };
+
3374
+
3375}
+
+
3376
+
+
3377Sphere::Sphere(uint a_OID, const std::vector<uint> &a_UUIDs, uint a_subdiv, const char *a_texturefile, helios::Context *a_context) {
+
3378
+
3379 makeIdentityMatrix( transform );
+
3380
+
3381 OID = a_OID;
+
3382 type = helios::OBJECT_TYPE_SPHERE;
+
3383 UUIDs = a_UUIDs;
+
3384 subdiv = a_subdiv;
+
3385 texturefile = a_texturefile;
+
3386 context = a_context;
+
3387
+
3388}
+
+
3389
+
+
3390Sphere* Context::getSphereObjectPointer(uint ObjID ) const{
+
3391 if( objects.find(ObjID) == objects.end() ){
+
3392 helios_runtime_error("ERROR (Context::getSphereObjectPointer): ObjectID of " + std::to_string(ObjID) + " does not exist in the Context.");
+
3393 }
+
3394 return dynamic_cast<Sphere*>(objects.at(ObjID));
+
3395}
+
+
3396
+
+
3397helios::vec3 Sphere::getRadius() const{
+
3398
+
3399 vec3 n0(0,0,0);
+
3400 vec3 nx(1,0,0);
+
3401 vec3 ny(0,1,0);
+
3402 vec3 nz(0,0,1);
+
3403 vec3 n0_T, nx_T, ny_T, nz_T;
+
3404
+
3405 vecmult(transform,n0,n0_T);
+
3406 vecmult(transform,nx,nx_T);
+
3407 vecmult(transform,ny,ny_T);
+
3408 vecmult(transform,nz,nz_T);
3409
-
3410 vecmult(transform,n0,n0_T);
-
3411 vecmult(transform,nx,nx_T);
-
3412 vecmult(transform,ny,ny_T);
-
3413 vecmult(transform,nz,nz_T);
+
3410 vec3 radii;
+
3411 radii.x = (nx_T-n0_T).magnitude();
+
3412 radii.y = (ny_T-n0_T).magnitude();
+
3413 radii.z = (nz_T-n0_T).magnitude();
3414
-
3415 vec3 radii;
-
3416 radii.x = (nx_T-n0_T).magnitude();
-
3417 radii.y = (ny_T-n0_T).magnitude();
-
3418 radii.z = (nz_T-n0_T).magnitude();
-
3419
-
3420 return radii;
-
3421
-
3422}
-
-
3423
-
-
3424vec3 Sphere::getCenter() const{
-
3425
-
3426 vec3 center;
-
3427 vec3 Y;
-
3428 Y.x = 0.f;
-
3429 Y.y = 0.f;
-
3430 Y.z = 0.f;
-
3431
-
3432 center.x = transform[0] * Y.x + transform[1] * Y.y + transform[2] * Y.z + transform[3];
-
3433 center.y = transform[4] * Y.x + transform[5] * Y.y + transform[6] * Y.z + transform[7];
-
3434 center.z = transform[8] * Y.x + transform[9] * Y.y + transform[10] * Y.z + transform[11];
-
3435
-
3436 return center;
-
3437
-
3438}
-
-
3439
-
-
3440uint Sphere::getSubdivisionCount() const{
-
3441 return subdiv;
-
3442}
-
-
3443
-
-
3444void Sphere::setSubdivisionCount( uint a_subdiv ){
-
3445 subdiv = a_subdiv;
+
3415 return radii;
+
3416
+
3417}
+
+
3418
+
+
3419vec3 Sphere::getCenter() const{
+
3420
+
3421 vec3 center;
+
3422 vec3 Y;
+
3423 Y.x = 0.f;
+
3424 Y.y = 0.f;
+
3425 Y.z = 0.f;
+
3426
+
3427 center.x = transform[0] * Y.x + transform[1] * Y.y + transform[2] * Y.z + transform[3];
+
3428 center.y = transform[4] * Y.x + transform[5] * Y.y + transform[6] * Y.z + transform[7];
+
3429 center.z = transform[8] * Y.x + transform[9] * Y.y + transform[10] * Y.z + transform[11];
+
3430
+
3431 return center;
+
3432
+
3433}
+
+
3434
+
+
3435uint Sphere::getSubdivisionCount() const{
+
3436 return subdiv;
+
3437}
+
+
3438
+
+
3439void Sphere::setSubdivisionCount( uint a_subdiv ){
+
3440 subdiv = a_subdiv;
+
3441}
+
+
3442
+
+
3443float Sphere::getVolume() const{
+
3444 const vec3 &radii = getRadius();
+
3445 return 4.f/3.f * M_PI * radii.x * radii.y * radii.z;
3446}
3447
-
3448float Sphere::getVolume() const{
-
3449 const vec3 &radii = getRadius();
-
3450 return 4.f/3.f * M_PI * radii.x * radii.y * radii.z;
-
3451}
-
+
3448Tube::Tube(uint a_OID, const std::vector<uint> &a_UUIDs, const std::vector<vec3> &a_nodes, const std::vector<float> &a_radius, const std::vector<helios::RGBcolor> &a_colors, const std::vector<std::vector<helios::vec3>> &a_triangle_vertices,
+
3449 uint a_subdiv, const char *a_texturefile, helios::Context *a_context) {
+
3450
+
3451 makeIdentityMatrix( transform );
3452
-
-
3453Tube::Tube(uint a_OID, const std::vector<uint> &a_UUIDs, const std::vector<vec3> &a_nodes, const std::vector<float> &a_radius, const std::vector<helios::RGBcolor> &a_colors, const std::vector<std::vector<helios::vec3>> &a_triangle_vertices,
-
3454 uint a_subdiv, const char *a_texturefile, helios::Context *a_context) {
-
3455
-
3456 makeIdentityMatrix( transform );
-
3457
-
3458 OID = a_OID;
-
3459 type = helios::OBJECT_TYPE_TUBE;
-
3460 UUIDs = a_UUIDs;
-
3461 nodes = a_nodes;
-
3462 radius = a_radius;
-
3463 colors = a_colors;
-
3464 triangle_vertices = a_triangle_vertices;
-
3465 subdiv = a_subdiv;
-
3466 texturefile = a_texturefile;
-
3467 context = a_context;
-
3468
-
3469}
-
-
3470
-
-
3471Tube* Context::getTubeObjectPointer(uint ObjID ) const{
-
3472 if( objects.find(ObjID) == objects.end() ){
-
3473 helios_runtime_error("ERROR (Context::getTubeObjectPointer): ObjectID of " + std::to_string(ObjID) + " does not exist in the Context.");
-
3474 }
-
3475 return dynamic_cast<Tube*>(objects.at(ObjID));
-
3476}
-
+
3453 OID = a_OID;
+
3454 type = helios::OBJECT_TYPE_TUBE;
+
3455 UUIDs = a_UUIDs;
+
3456 nodes = a_nodes;
+
3457 radius = a_radius;
+
3458 colors = a_colors;
+
3459 triangle_vertices = a_triangle_vertices;
+
3460 subdiv = a_subdiv;
+
3461 texturefile = a_texturefile;
+
3462 context = a_context;
+
3463
+
3464}
+
+
3465
+
+
3466Tube* Context::getTubeObjectPointer(uint ObjID ) const{
+
3467 if( objects.find(ObjID) == objects.end() ){
+
3468 helios_runtime_error("ERROR (Context::getTubeObjectPointer): ObjectID of " + std::to_string(ObjID) + " does not exist in the Context.");
+
3469 }
+
3470 return dynamic_cast<Tube*>(objects.at(ObjID));
+
3471}
+
+
3472
+
+
3473std::vector<helios::vec3> Tube::getNodes() const{
+
3474
+
3475 std::vector<vec3> nodes_T;
+
3476 nodes_T.resize( nodes.size() );
3477
-
-
3478std::vector<helios::vec3> Tube::getNodes() const{
-
3479
-
3480 std::vector<vec3> nodes_T;
-
3481 nodes_T.resize( nodes.size() );
-
3482
-
3483 for( uint i=0; i<nodes.size(); i++ ){
-
3484 nodes_T.at(i).x = transform[0] * nodes.at(i).x + transform[1] * nodes.at(i).y + transform[2] * nodes.at(i).z + transform[3];
-
3485 nodes_T.at(i).y = transform[4] * nodes.at(i).x + transform[5] * nodes.at(i).y + transform[6] * nodes.at(i).z + transform[7];
-
3486 nodes_T.at(i).z = transform[8] * nodes.at(i).x + transform[9] * nodes.at(i).y + transform[10] * nodes.at(i).z + transform[11];
-
3487 }
-
3488
-
3489 return nodes_T;
-
3490
-
3491}
-
+
3478 for( uint i=0; i<nodes.size(); i++ ){
+
3479 nodes_T.at(i).x = transform[0] * nodes.at(i).x + transform[1] * nodes.at(i).y + transform[2] * nodes.at(i).z + transform[3];
+
3480 nodes_T.at(i).y = transform[4] * nodes.at(i).x + transform[5] * nodes.at(i).y + transform[6] * nodes.at(i).z + transform[7];
+
3481 nodes_T.at(i).z = transform[8] * nodes.at(i).x + transform[9] * nodes.at(i).y + transform[10] * nodes.at(i).z + transform[11];
+
3482 }
+
3483
+
3484 return nodes_T;
+
3485
+
3486}
+
+
3487
+
+
3488std::vector<float> Tube::getNodeRadii() const{
+
3489 std::vector<float> radius_T;
+
3490 radius_T.resize(radius.size());
+
3491 for( int i=0; i<radius.size(); i++ ){
3492
-
-
3493std::vector<float> Tube::getNodeRadii() const{
-
3494 std::vector<float> radius_T;
-
3495 radius_T.resize(radius.size());
-
3496 for( int i=0; i<radius.size(); i++ ){
-
3497
-
3498 vec3 n0(0,0,0), nx(radius.at(i),0,0);
-
3499 vec3 n0_T, nx_T;
+
3493 vec3 n0(0,0,0), nx(radius.at(i),0,0);
+
3494 vec3 n0_T, nx_T;
+
3495
+
3496 vecmult(transform,n0,n0_T);
+
3497 vecmult(transform,nx,nx_T);
+
3498
+
3499 radius_T.at(i) = (nx_T-n0_T).magnitude();
3500
-
3501 vecmult(transform,n0,n0_T);
-
3502 vecmult(transform,nx,nx_T);
-
3503
-
3504 radius_T.at(i) = (nx_T-n0_T).magnitude();
-
3505
-
3506 }
-
3507 return radius_T;
-
3508}
-
-
3509
-
-
3510std::vector<helios::RGBcolor> Tube::getNodeColors() const{
-
3511 return colors;
-
3512}
-
-
3513
-
-
3514std::vector<std::vector<helios::vec3>> Tube::getTriangleVertices() const{
-
3515 return triangle_vertices;
-
3516}
-
-
3517
-
-
3518uint Tube::getSubdivisionCount() const{
-
3519 return subdiv;
-
3520}
-
-
3521
-
-
3522float Tube::getLength() const{
-
3523
-
3524 float length = 0.f;
-
3525 for( uint i=0; i<nodes.size()-1; i++ ){
-
3526 length += (nodes.at(i+1)-nodes.at(i)).magnitude();
-
3527 }
-
3528 return length;
-
3529
-
3530}
-
-
3531
-
-
3532float Tube::getVolume() const{
-
3533
-
3534 const std::vector<float> &radii = getNodeRadii();
-
3535 float volume = 0.f;
-
3536 for( uint i=0; i<radii.size()-1; i++ ){
-
3537 float segment_length = (nodes.at(i+1)-nodes.at(i)).magnitude();
-
3538 float r0 = radii.at(i);
-
3539 float r1 = radii.at(i+1);
-
3540 volume += M_PI * segment_length / 3.f * (r0*r0 + r0*r1 + r1*r1);
-
3541 }
+
3501 }
+
3502 return radius_T;
+
3503}
+
+
3504
+
+
3505std::vector<helios::RGBcolor> Tube::getNodeColors() const{
+
3506 return colors;
+
3507}
+
+
3508
+
+
3509std::vector<std::vector<helios::vec3>> Tube::getTriangleVertices() const{
+
3510 return triangle_vertices;
+
3511}
+
+
3512
+
+
3513uint Tube::getSubdivisionCount() const{
+
3514 return subdiv;
+
3515}
+
+
3516
+
+
3517float Tube::getLength() const{
+
3518
+
3519 float length = 0.f;
+
3520 for( uint i=0; i<nodes.size()-1; i++ ){
+
3521 length += (nodes.at(i+1)-nodes.at(i)).magnitude();
+
3522 }
+
3523 return length;
+
3524
+
3525}
+
+
3526
+
+
3527float Tube::getVolume() const{
+
3528
+
3529 const std::vector<float> &radii = getNodeRadii();
+
3530 float volume = 0.f;
+
3531 for( uint i=0; i<radii.size()-1; i++ ){
+
3532 float segment_length = (nodes.at(i+1)-nodes.at(i)).magnitude();
+
3533 float r0 = radii.at(i);
+
3534 float r1 = radii.at(i+1);
+
3535 volume += M_PI * segment_length / 3.f * (r0*r0 + r0*r1 + r1*r1);
+
3536 }
+
3537
+
3538 return volume;
+
3539}
+
+
3540
+
+
3541float Tube::getSegmentVolume( uint segment_index ) const{
3542
-
3543 return volume;
-
3544}
-
-
3545
-
-
3546float Tube::getSegmentVolume( uint segment_index ) const{
-
3547
-
3548 if( segment_index>=nodes.size()-1 ){
-
3549 helios_runtime_error("ERROR (Tube::getSegmentVolume): Segment index out of bounds.");
-
3550 }
+
3543 if( segment_index>=nodes.size()-1 ){
+
3544 helios_runtime_error("ERROR (Tube::getSegmentVolume): Segment index out of bounds.");
+
3545 }
+
3546
+
3547 float segment_length = (nodes.at(segment_index+1)-nodes.at(segment_index)).magnitude();
+
3548 float r0 = radius.at(segment_index);
+
3549 float r1 = radius.at(segment_index+1);
+
3550 float volume = M_PI * segment_length / 3.f * (r0*r0 + r0*r1 + r1*r1);
3551
-
3552 float segment_length = (nodes.at(segment_index+1)-nodes.at(segment_index)).magnitude();
-
3553 float r0 = radius.at(segment_index);
-
3554 float r1 = radius.at(segment_index+1);
-
3555 float volume = M_PI * segment_length / 3.f * (r0*r0 + r0*r1 + r1*r1);
+
3552 return volume;
+
3553}
+
+
3554
+
+
3555void Tube::appendTubeSegment( const helios::vec3 &node_position, float node_radius, const helios::RGBcolor &node_color ){
3556
-
3557 return volume;
-
3558}
-
-
3559
-
-
3560void Tube::appendTubeSegment( const helios::vec3 &node_position, float node_radius, const helios::RGBcolor &node_color ){
-
3561
-
3562 if( node_radius<0 ){
-
3563 helios_runtime_error("ERROR (Tube::appendTubeSegment): Node radius must be positive.");
-
3564 }
+
3557 //\todo This is a computationally inefficient method for appending the tube, but it ensures that there is no twisting of the tube relative to the previous tube segments.
+
3558
+
3559 if( node_radius<0 ){
+
3560 helios_runtime_error("ERROR (Tube::appendTubeSegment): Node radius must be positive.");
+
3561 }
+
3562 node_radius = std::max((float)1e-5, node_radius);
+
3563
+
3564 uint radial_subdivisions = subdiv;
3565
-
3566 uint radial_subdivisions = subdiv;
-
3567
-
3568 vec3 axial_vector;
-
3569 std::vector<float> cfact(radial_subdivisions + 1);
-
3570 std::vector<float> sfact(radial_subdivisions + 1);
-
3571
-
3572 vec3 nvec(0.1817f,0.6198f,0.7634f);//random vector to get things going
-
3573
-
3574 for(int j=0; j < radial_subdivisions + 1; j++ ){
-
3575 cfact[j]=cosf(2.f*float(M_PI)*float(j)/float(radial_subdivisions));
-
3576 sfact[j]=sinf(2.f*float(M_PI)*float(j)/float(radial_subdivisions));
-
3577 }
-
3578
-
3579 triangle_vertices.resize( triangle_vertices.size() + 1 );
-
3580 triangle_vertices.back().resize(radial_subdivisions+1);
+
3566 vec3 axial_vector;
+
3567 std::vector<float> cfact(radial_subdivisions + 1);
+
3568 std::vector<float> sfact(radial_subdivisions + 1);
+
3569
+
3570 for(int j=0; j < radial_subdivisions + 1; j++ ){
+
3571 cfact[j]=cosf(2.f*float(M_PI)*float(j)/float(radial_subdivisions));
+
3572 sfact[j]=sinf(2.f*float(M_PI)*float(j)/float(radial_subdivisions));
+
3573 }
+
3574
+
3575 triangle_vertices.resize( triangle_vertices.size() + 1 );
+
3576 triangle_vertices.back().resize(radial_subdivisions+1);
+
3577
+
3578 nodes.push_back( node_position );
+
3579 radius.push_back( node_radius );
+
3580 colors.push_back( node_color );
3581
-
3582 nodes.push_back( node_position );
-
3583 radius.push_back( node_radius );
-
3584 colors.push_back( node_color );
-
3585
-
3586 int node_count = nodes.size();
+
3582 int node_count = nodes.size();
+
3583
+
3584 vec3 initial_radial(1.0f, 0.0f, 0.0f);
+
3585 vec3 previous_axial_vector;
+
3586 vec3 previous_radial_dir;
3587
-
3588 for( int i=node_count-3; i<node_count; i++ ){ //looping over tube segments
-
3589
-
3590 axial_vector = node_position - nodes.at(node_count-2);
-
3591 axial_vector.normalize();
+
3588 for (int i = 0; i < node_count; i++) { // Looping over tube segments
+
3589 if (radius.at(i) < 0) {
+
3590 helios_runtime_error("ERROR (Context::appendTubeSegment): Radius of tube must be positive.");
+
3591 }
3592
-
3593 vec3 radial_dir = nvec - axial_vector * (nvec * axial_vector);
-
3594 radial_dir.normalize();
-
3595
-
3596 vec3 orthogonal_dir = cross(radial_dir, axial_vector);
-
3597 orthogonal_dir.normalize();
-
3598
-
3599 for(int j=0; j < radial_subdivisions + 1; j++ ){
-
3600
-
3601 vec3 normal = cfact.at(j)*radius.at(i)*radial_dir + sfact.at(j)*radius.at(i)*orthogonal_dir;
-
3602 triangle_vertices.at(i).at(j)=nodes.at(i)+normal;
-
3603
-
3604 }
-
3605
-
3606 }
+
3593 if (i == 0) {
+
3594 axial_vector = nodes[i + 1] - nodes[i];
+
3595 axial_vector.normalize();
+
3596 if (fabs(axial_vector * initial_radial) > 0.99f) {
+
3597 initial_radial = vec3(0.0f, 1.0f, 0.0f); // Avoid parallel vectors
+
3598 }
+
3599 previous_radial_dir = cross(axial_vector, initial_radial).normalize();
+
3600 } else {
+
3601 if (i == node_count - 1) {
+
3602 axial_vector = nodes[i] - nodes[i - 1];
+
3603 } else {
+
3604 axial_vector = 0.5f * ((nodes[i] - nodes[i - 1]) + (nodes[i + 1] - nodes[i]));
+
3605 }
+
3606 axial_vector.normalize();
3607
-
3608 int old_triangle_count = UUIDs.size();
-
3609
-
3610 vec3 v0, v1, v2;
-
3611
-
3612 //add triangles for new segment
-
3613
-
3614 for(int j=0; j < radial_subdivisions; j++ ) {
-
3615
-
3616 v0 = triangle_vertices.at(1).at(j);
-
3617 v1 = triangle_vertices.at(1+1).at(j + 1);
-
3618 v2 = triangle_vertices.at(1).at(j + 1);
-
3619
-
3620 UUIDs.push_back(context->addTriangle(v0, v1, v2, node_color));
-
3621
-
3622 v0 = triangle_vertices.at(1).at(j);
-
3623 v1 = triangle_vertices.at(1+1).at(j);
-
3624 v2 = triangle_vertices.at(1+1).at(j + 1);
-
3625
-
3626 UUIDs.push_back(context->addTriangle(v0, v1, v2, node_color));
-
3627
-
3628 }
-
3629
-
3630 for( uint p : UUIDs){
-
3631 context->setPrimitiveParentObjectID(p, this->OID);
-
3632 }
-
3633
-
3634 updateTriangleVertices();
-
3635
-
3636}
-
-
3637
-
-
3638void Tube::appendTubeSegment( const helios::vec3 &node_position, float node_radius, const char* texturefile, const helios::vec2 &textureuv_ufrac ){
-
3639
-
3640 if( node_radius<0 ){
-
3641 helios_runtime_error("ERROR (Tube::appendTubeSegment): Node radius must be positive.");
-
3642 }else if( textureuv_ufrac.x<0 || textureuv_ufrac.y<0 || textureuv_ufrac.x>1 || textureuv_ufrac.y>1 ){
-
3643 helios_runtime_error("ERROR (Tube::appendTubeSegment): Texture U fraction must be between 0 and 1.");
-
3644 }
-
3645
-
3646 uint radial_subdivisions = subdiv;
-
3647
-
3648 vec3 axial_vector;
-
3649 std::vector<float> cfact(radial_subdivisions + 1);
-
3650 std::vector<float> sfact(radial_subdivisions + 1);
-
3651
-
3652 vec3 nvec(0.1817f,0.6198f,0.7634f);//random vector to get things going
-
3653
-
3654 for(int j=0; j < radial_subdivisions + 1; j++ ){
-
3655 cfact[j]=cosf(2.f*float(M_PI)*float(j)/float(radial_subdivisions));
-
3656 sfact[j]=sinf(2.f*float(M_PI)*float(j)/float(radial_subdivisions));
+
3608 // Calculate radial direction using parallel transport
+
3609 vec3 rotation_axis = cross(previous_axial_vector, axial_vector);
+
3610 if (rotation_axis.magnitude() > 1e-6) {
+
3611 float angle = acos(previous_axial_vector * axial_vector);
+
3612 previous_radial_dir = rotatePointAboutLine(previous_radial_dir, vec3(0.0f, 0.0f, 0.0f), rotation_axis, angle);
+
3613 }
+
3614 previous_radial_dir.normalize();
+
3615 }
+
3616
+
3617 previous_axial_vector = axial_vector;
+
3618
+
3619 vec3 radial_dir = previous_radial_dir;
+
3620 vec3 orthogonal_dir = cross(radial_dir, axial_vector);
+
3621 orthogonal_dir.normalize();
+
3622
+
3623 if( i<node_count-2 ){
+
3624 continue;
+
3625 }
+
3626
+
3627 for (int j = 0; j < radial_subdivisions + 1; j++) {
+
3628 vec3 normal = cfact[j] * radius[i] * radial_dir + sfact[j] * radius[i] * orthogonal_dir;
+
3629 triangle_vertices[i][j] = nodes[i] + normal;
+
3630 }
+
3631 }
+
3632
+
3633 int old_triangle_count = UUIDs.size();
+
3634
+
3635 vec3 v0, v1, v2;
+
3636
+
3637 //add triangles for new segment
+
3638
+
3639 for(int j=0; j < radial_subdivisions; j++ ) {
+
3640
+
3641 v0 = triangle_vertices.at(1).at(j);
+
3642 v1 = triangle_vertices.at(1+1).at(j + 1);
+
3643 v2 = triangle_vertices.at(1).at(j + 1);
+
3644
+
3645 UUIDs.push_back(context->addTriangle(v0, v1, v2, node_color));
+
3646
+
3647 v0 = triangle_vertices.at(1).at(j);
+
3648 v1 = triangle_vertices.at(1+1).at(j);
+
3649 v2 = triangle_vertices.at(1+1).at(j + 1);
+
3650
+
3651 UUIDs.push_back(context->addTriangle(v0, v1, v2, node_color));
+
3652
+
3653 }
+
3654
+
3655 for( uint p : UUIDs){
+
3656 context->setPrimitiveParentObjectID(p, this->OID);
3657 }
3658
-
3659 triangle_vertices.resize( triangle_vertices.size() + 1 );
-
3660 triangle_vertices.back().resize(radial_subdivisions+1);
-
3661 std::vector<std::vector<vec2> > uv;
-
3662 resize_vector( uv, radial_subdivisions + 1, 2 );
-
3663
-
3664 nodes.push_back( node_position );
-
3665 radius.push_back( node_radius );
-
3666 colors.push_back( RGB::black );
-
3667
-
3668 int node_count = nodes.size();
-
3669
-
3670 for( int i=node_count-3; i<node_count; i++ ){ //looping over tube segments
-
3671
-
3672 axial_vector = node_position - nodes.at(node_count-2);
-
3673 axial_vector.normalize();
-
3674
-
3675 vec3 radial_dir = nvec - axial_vector * (nvec * axial_vector);
-
3676 radial_dir.normalize();
-
3677
-
3678 vec3 orthogonal_dir = cross(radial_dir, axial_vector);
-
3679 orthogonal_dir.normalize();
-
3680
-
3681 for(int j=0; j < radial_subdivisions + 1; j++ ){
-
3682
-
3683 vec3 normal = cfact.at(j)*radius.at(i)*radial_dir + sfact.at(j)*radius.at(i)*orthogonal_dir;
-
3684 triangle_vertices.at(i).at(j)=nodes.at(i)+normal;
-
3685
-
3686 }
-
3687 }
-
3688
-
3689 std::vector<float> ufrac{textureuv_ufrac.x, textureuv_ufrac.y};
-
3690 for( int i=0; i<2; i++ ){
-
3691 for(int j=0; j < radial_subdivisions + 1; j++ ){
-
3692 uv.at(i).at(j).x = ufrac.at(i);
-
3693 uv.at(i).at(j).y = float(j)/float(radial_subdivisions);
-
3694 }
-
3695 }
-
3696
-
3697 int old_triangle_count = UUIDs.size();
-
3698
-
3699 vec3 v0, v1, v2;
-
3700 vec2 uv0, uv1, uv2;
-
3701
-
3702 //add triangles for new segment
-
3703
-
3704 for(int j=0; j < radial_subdivisions; j++ ) {
-
3705
-
3706 v0 = triangle_vertices.at(1).at(j);
-
3707 v1 = triangle_vertices.at(1+1).at(j + 1);
-
3708 v2 = triangle_vertices.at(1).at(j + 1);
-
3709
-
3710 uv0 = uv.at(0).at(j);
-
3711 uv1 = uv.at(0+1).at(j+1);
-
3712 uv2 = uv.at(0).at(j+1);
-
3713
-
3714 UUIDs.push_back(context->addTriangle(v0, v1, v2, texturefile, uv0, uv1, uv2));
-
3715
-
3716 v0 = triangle_vertices.at(1).at(j);
-
3717 v1 = triangle_vertices.at(1+1).at(j);
-
3718 v2 = triangle_vertices.at(1+1).at(j + 1);
+
3659 updateTriangleVertices();
+
3660
+
3661}
+
+
3662
+
+
3663void Tube::appendTubeSegment(const helios::vec3 &node_position, float node_radius, const char* texturefile, const helios::vec2 &textureuv_ufrac) {
+
3664
+
3665 //\todo This is a computationally inefficient method for appending the tube, but it ensures that there is no twisting of the tube relative to the previous tube segments.
+
3666
+
3667 if (node_radius < 0) {
+
3668 helios_runtime_error("ERROR (Tube::appendTubeSegment): Node radius must be positive.");
+
3669 } else if (textureuv_ufrac.x < 0 || textureuv_ufrac.y < 0 || textureuv_ufrac.x > 1 || textureuv_ufrac.y > 1) {
+
3670 helios_runtime_error("ERROR (Tube::appendTubeSegment): Texture U fraction must be between 0 and 1.");
+
3671 }
+
3672 node_radius = std::max((float)1e-5, node_radius);
+
3673
+
3674 uint radial_subdivisions = subdiv;
+
3675
+
3676 vec3 axial_vector;
+
3677 std::vector<float> cfact(radial_subdivisions + 1);
+
3678 std::vector<float> sfact(radial_subdivisions + 1);
+
3679
+
3680 for (int j = 0; j < radial_subdivisions + 1; j++) {
+
3681 cfact[j] = cosf(2.f * float(M_PI) * float(j) / float(radial_subdivisions));
+
3682 sfact[j] = sinf(2.f * float(M_PI) * float(j) / float(radial_subdivisions));
+
3683 }
+
3684
+
3685 triangle_vertices.resize(triangle_vertices.size() + 1);
+
3686 triangle_vertices.back().resize(radial_subdivisions + 1);
+
3687 std::vector<std::vector<vec2>> uv;
+
3688 resize_vector(uv, radial_subdivisions + 1, 2);
+
3689
+
3690 nodes.push_back(node_position);
+
3691 radius.push_back(node_radius);
+
3692 colors.push_back(RGB::black);
+
3693
+
3694 int node_count = nodes.size();
+
3695
+
3696 vec3 initial_radial(1.0f, 0.0f, 0.0f);
+
3697 vec3 previous_axial_vector;
+
3698 vec3 previous_radial_dir;
+
3699
+
3700 for (int i = 0; i < node_count; i++) { // Looping over tube segments
+
3701 if (radius.at(i) < 0) {
+
3702 helios_runtime_error("ERROR (Context::appendTubeSegment): Radius of tube must be positive.");
+
3703 }
+
3704
+
3705 if (i == 0) {
+
3706 axial_vector = nodes[i + 1] - nodes[i];
+
3707 axial_vector.normalize();
+
3708 if (fabs(axial_vector * initial_radial) > 0.99f) {
+
3709 initial_radial = vec3(0.0f, 1.0f, 0.0f); // Avoid parallel vectors
+
3710 }
+
3711 previous_radial_dir = cross(axial_vector, initial_radial).normalize();
+
3712 } else {
+
3713 if (i == node_count - 1) {
+
3714 axial_vector = nodes[i] - nodes[i - 1];
+
3715 } else {
+
3716 axial_vector = 0.5f * ((nodes[i] - nodes[i - 1]) + (nodes[i + 1] - nodes[i]));
+
3717 }
+
3718 axial_vector.normalize();
3719
-
3720 uv0 = uv.at(0).at(j);
-
3721 uv1 = uv.at(0+1).at(j);
-
3722 uv2 = uv.at(0+1).at(j+1);
-
3723
-
3724 UUIDs.push_back(context->addTriangle(v0, v1, v2, texturefile, uv0, uv1, uv2));
-
3725
-
3726 }
-
3727
-
3728 for( uint p : UUIDs){
-
3729 context->setPrimitiveParentObjectID(p, this->OID);
-
3730 }
-
3731
-
3732 updateTriangleVertices();
-
3733
-
3734}
-
-
3735
-
-
3736void Tube::scaleTubeGirth( float S ){
-
3737
-
3738 for( int segment=0; segment<triangle_vertices.size(); segment++ ){
-
3739
-
3740 for( vec3 &vertex : triangle_vertices.at(segment) ){
-
3741
-
3742 vec3 axis = vertex - nodes.at(segment);
-
3743
-
3744 float current_radius = axis.magnitude();
-
3745 axis = axis/current_radius;
-
3746
-
3747 vertex = nodes.at(segment) + axis * current_radius * S;
-
3748
-
3749 }
-
3750 }
-
3751
-
3752 updateTriangleVertices();
-
3753
-
3754}
-
-
3755
-
-
3756void Tube::setTubeRadii( const std::vector<float> &node_radii ){
+
3720 // Calculate radial direction using parallel transport
+
3721 vec3 rotation_axis = cross(previous_axial_vector, axial_vector);
+
3722 if (rotation_axis.magnitude() > 1e-6) {
+
3723 float angle = acos(previous_axial_vector * axial_vector);
+
3724 previous_radial_dir = rotatePointAboutLine(previous_radial_dir, vec3(0.0f, 0.0f, 0.0f), rotation_axis, angle);
+
3725 }
+
3726 previous_radial_dir.normalize();
+
3727 }
+
3728
+
3729 previous_axial_vector = axial_vector;
+
3730
+
3731 vec3 radial_dir = previous_radial_dir;
+
3732 vec3 orthogonal_dir = cross(radial_dir, axial_vector);
+
3733 orthogonal_dir.normalize();
+
3734
+
3735 if( i<node_count-2 ){
+
3736 continue;
+
3737 }
+
3738
+
3739 for (int j = 0; j < radial_subdivisions + 1; j++) {
+
3740 vec3 normal = cfact[j] * radius[i] * radial_dir + sfact[j] * radius[i] * orthogonal_dir;
+
3741 triangle_vertices[i][j] = nodes[i] + normal;
+
3742 }
+
3743 }
+
3744
+
3745 std::vector<float> ufrac{textureuv_ufrac.x, textureuv_ufrac.y};
+
3746 for (int i = 0; i < 2; i++) {
+
3747 for (int j = 0; j < radial_subdivisions + 1; j++) {
+
3748 uv[i][j].x = ufrac[i];
+
3749 uv[i][j].y = float(j) / float(radial_subdivisions);
+
3750 }
+
3751 }
+
3752
+
3753 int old_triangle_count = UUIDs.size();
+
3754
+
3755 vec3 v0, v1, v2;
+
3756 vec2 uv0, uv1, uv2;
3757
-
3758 if( node_radii.size() != nodes.size() ){
-
3759 helios_runtime_error("ERROR (Tube::setTubeRadii): Number of radii in input vector must match number of tube nodes.");
-
3760 }
-
3761
-
3762 radius = node_radii;
+
3758 // Add triangles for new segment
+
3759 for (int j = 0; j < radial_subdivisions; j++) {
+
3760 v0 = triangle_vertices[node_count - 2][j];
+
3761 v1 = triangle_vertices[node_count - 1][j + 1];
+
3762 v2 = triangle_vertices[node_count - 2][j + 1];
3763
-
3764 for( int segment=0; segment<triangle_vertices.size(); segment++ ){
-
3765
-
3766 for( vec3 &vertex : triangle_vertices.at(segment) ){
+
3764 uv0 = uv[0][j];
+
3765 uv1 = uv[1][j + 1];
+
3766 uv2 = uv[0][j + 1];
3767
-
3768 vec3 axis = vertex - nodes.at(segment);
-
3769 axis.normalize();
-
3770
-
3771 vertex = nodes.at(segment) + axis * radius.at(segment);
-
3772
-
3773 }
-
3774 }
-
3775
-
3776 updateTriangleVertices();
-
3777}
-
-
3778
-
-
3779void Tube::scaleTubeLength( float S ){
+
3768 UUIDs.push_back(context->addTriangle(v0, v1, v2, texturefile, uv0, uv1, uv2));
+
3769
+
3770 v0 = triangle_vertices[node_count - 2][j];
+
3771 v1 = triangle_vertices[node_count - 1][j];
+
3772 v2 = triangle_vertices[node_count - 1][j + 1];
+
3773
+
3774 uv0 = uv[0][j];
+
3775 uv1 = uv[1][j];
+
3776 uv2 = uv[1][j + 1];
+
3777
+
3778 UUIDs.push_back(context->addTriangle(v0, v1, v2, texturefile, uv0, uv1, uv2));
+
3779 }
3780
-
3781 for( int segment=0; segment<triangle_vertices.size()-1; segment++ ){
-
3782
-
3783 vec3 central_axis = (nodes.at(segment+1)-nodes.at(segment));
-
3784 float current_length = central_axis.magnitude();
-
3785 central_axis = central_axis/current_length;
-
3786 vec3 dL = central_axis * current_length * (1.f - S);
+
3781 for (uint p : UUIDs) {
+
3782 context->setPrimitiveParentObjectID(p, this->OID);
+
3783 }
+
3784
+
3785 updateTriangleVertices();
+
3786}
+
3787
-
3788 for( int downstream_segment=segment+1; downstream_segment<triangle_vertices.size(); downstream_segment++ ){
+
+
3788void Tube::scaleTubeGirth( float S ){
3789
-
3790 nodes.at(downstream_segment) = nodes.at(downstream_segment) - dL;
+
3790 for( int segment=0; segment<triangle_vertices.size(); segment++ ){
3791
-
3792 for( int v=0; v<triangle_vertices.at(downstream_segment).size(); v++ ){
+
3792 for( vec3 &vertex : triangle_vertices.at(segment) ){
3793
-
3794 triangle_vertices.at(downstream_segment).at(v) = triangle_vertices.at(downstream_segment).at(v) - dL;
+
3794 vec3 axis = vertex - nodes.at(segment);
3795
-
3796 }
-
3797
-
3798 }
-
3799 }
+
3796 float current_radius = axis.magnitude();
+
3797 axis = axis/current_radius;
+
3798
+
3799 vertex = nodes.at(segment) + axis * current_radius * S;
3800
-
3801 updateTriangleVertices();
-
3802
-
3803}
-
-
3804
-
-
3805void Tube::setTubeNodes( const std::vector<helios::vec3> &node_xyz ){
-
3806
-
3807 if( node_xyz.size() != nodes.size() ){
-
3808 helios_runtime_error("ERROR (Tube::setTubeNodes): Number of nodes in input vector must match number of tube nodes.");
-
3809 }
-
3810
-
3811 for( int segment=0; segment<triangle_vertices.size(); segment++ ){
-
3812
-
3813 for( vec3 &vertex : triangle_vertices.at(segment) ){
-
3814
-
3815 vertex = node_xyz.at(segment) + vertex - nodes.at(segment);
-
3816
-
3817 }
-
3818 }
+
3801 }
+
3802 }
+
3803
+
3804 updateTriangleVertices();
+
3805
+
3806}
+
+
3807
+
+
3808void Tube::setTubeRadii( const std::vector<float> &node_radii ){
+
3809
+
3810 if( node_radii.size() != nodes.size() ){
+
3811 helios_runtime_error("ERROR (Tube::setTubeRadii): Number of radii in input vector must match number of tube nodes.");
+
3812 }
+
3813
+
3814 radius = node_radii;
+
3815
+
3816 for( int segment=0; segment<triangle_vertices.size(); segment++ ){
+
3817
+
3818 for( vec3 &vertex : triangle_vertices.at(segment) ){
3819
-
3820 nodes = node_xyz;
-
3821
-
3822 updateTriangleVertices();
-
3823
-
3824}
-
-
3825
-
3826void Tube::updateTriangleVertices(){
+
3820 vec3 axis = vertex - nodes.at(segment);
+
3821 axis.normalize();
+
3822
+
3823 vertex = nodes.at(segment) + axis * radius.at(segment);
+
3824
+
3825 }
+
3826 }
3827
-
3828 vec3 v0, v1, v2;
-
3829
-
3830 int ii=0;
-
3831 for (int i = 0; i < nodes.size() - 1; i++) {
-
3832 for(int j=0; j < subdiv; j++ ) {
-
3833
-
3834 v0 = triangle_vertices.at(i).at(j);
-
3835 v1 = triangle_vertices.at(i + 1).at(j + 1);
-
3836 v2 = triangle_vertices.at(i).at(j + 1);
-
3837 context->setTriangleVertices(UUIDs.at(ii), v0, v1, v2);
-
3838
-
3839 v0 = triangle_vertices.at(i).at(j);
-
3840 v1 = triangle_vertices.at(i + 1).at(j);
-
3841 v2 = triangle_vertices.at(i + 1).at(j + 1);
-
3842
-
3843 context->setTriangleVertices(UUIDs.at(ii+1), v0, v1, v2);
-
3844
-
3845 ii += 2;
-
3846 }
-
3847 }
-
3848
-
3849}
-
3850
-
-
3851Box::Box(uint a_OID, const std::vector<uint> &a_UUIDs, const int3 &a_subdiv, const char *a_texturefile, helios::Context *a_context) {
+
3828 updateTriangleVertices();
+
3829}
+
+
3830
+
+
3831void Tube::scaleTubeLength( float S ){
+
3832
+
3833 for( int segment=0; segment<triangle_vertices.size()-1; segment++ ){
+
3834
+
3835 vec3 central_axis = (nodes.at(segment+1)-nodes.at(segment));
+
3836 float current_length = central_axis.magnitude();
+
3837 central_axis = central_axis/current_length;
+
3838 vec3 dL = central_axis * current_length * (1.f - S);
+
3839
+
3840 for( int downstream_segment=segment+1; downstream_segment<triangle_vertices.size(); downstream_segment++ ){
+
3841
+
3842 nodes.at(downstream_segment) = nodes.at(downstream_segment) - dL;
+
3843
+
3844 for( int v=0; v<triangle_vertices.at(downstream_segment).size(); v++ ){
+
3845
+
3846 triangle_vertices.at(downstream_segment).at(v) = triangle_vertices.at(downstream_segment).at(v) - dL;
+
3847
+
3848 }
+
3849
+
3850 }
+
3851 }
3852
-
3853 makeIdentityMatrix( transform );
+
3853 updateTriangleVertices();
3854
-
3855 OID = a_OID;
-
3856 type = helios::OBJECT_TYPE_BOX;
-
3857 UUIDs = a_UUIDs;
-
3858 subdiv = a_subdiv;
-
3859 texturefile = a_texturefile;
-
3860 context = a_context;
-
3861
-
3862}
-
-
3863
-
-
3864Box* Context::getBoxObjectPointer(uint ObjID ) const{
-
3865 if( objects.find(ObjID) == objects.end() ){
-
3866 helios_runtime_error("ERROR (Context::getBoxObjectPointer): ObjectID of " + std::to_string(ObjID) + " does not exist in the Context.");
-
3867 }
-
3868 return dynamic_cast<Box*>(objects.at(ObjID));
-
3869}
-
-
3870
-
-
3871vec3 Box::getSize() const{
-
3872
-
3873 vec3 n0(0,0,0), nx(1,0,0), ny(0,1,0), nz(0,0,1);
-
3874
-
3875 vec3 n0_T, nx_T, ny_T, nz_T;
-
3876
-
3877 vecmult(transform,n0,n0_T);
-
3878 vecmult(transform,nx,nx_T);
-
3879 vecmult(transform,ny,ny_T);
-
3880 vecmult(transform,nz,nz_T);
+
3855}
+
+
3856
+
+
3857void Tube::setTubeNodes( const std::vector<helios::vec3> &node_xyz ){
+
3858
+
3859 if( node_xyz.size() != nodes.size() ){
+
3860 helios_runtime_error("ERROR (Tube::setTubeNodes): Number of nodes in input vector must match number of tube nodes.");
+
3861 }
+
3862
+
3863 for( int segment=0; segment<triangle_vertices.size(); segment++ ){
+
3864
+
3865 for( vec3 &vertex : triangle_vertices.at(segment) ){
+
3866
+
3867 vertex = node_xyz.at(segment) + vertex - nodes.at(segment);
+
3868
+
3869 }
+
3870 }
+
3871
+
3872 nodes = node_xyz;
+
3873
+
3874 updateTriangleVertices();
+
3875
+
3876}
+
+
3877
+
3878void Tube::updateTriangleVertices(){
+
3879
+
3880 vec3 v0, v1, v2;
3881
-
3882 float x = (nx_T-n0_T).magnitude();
-
3883 float y = (ny_T-n0_T).magnitude();
-
3884 float z = (nz_T-n0_T).magnitude();
+
3882 int ii=0;
+
3883 for (int i = 0; i < nodes.size() - 1; i++) {
+
3884 for(int j=0; j < subdiv; j++ ) {
3885
-
3886 return make_vec3( x, y, z );
-
3887
-
3888}
-
-
3889
-
-
3890vec3 Box::getCenter() const{
-
3891
-
3892 vec3 center;
-
3893 vec3 Y;
-
3894 Y.x = 0.f;
-
3895 Y.y = 0.f;
-
3896 Y.z = 0.f;
-
3897
-
3898 center.x = transform[0] * Y.x + transform[1] * Y.y + transform[2] * Y.z + transform[3];
-
3899 center.y = transform[4] * Y.x + transform[5] * Y.y + transform[6] * Y.z + transform[7];
-
3900 center.z = transform[8] * Y.x + transform[9] * Y.y + transform[10] * Y.z + transform[11];
-
3901
-
3902 return center;
-
3903
-
3904}
-
-
3905
-
-
3906helios::int3 Box::getSubdivisionCount() const{
-
3907 return subdiv;
-
3908}
-
-
3909
-
-
3910void Box::setSubdivisionCount( const helios::int3 &a_subdiv ){
-
3911 subdiv = a_subdiv;
-
3912}
-
+
3886 v0 = triangle_vertices.at(i).at(j);
+
3887 v1 = triangle_vertices.at(i + 1).at(j + 1);
+
3888 v2 = triangle_vertices.at(i).at(j + 1);
+
3889 context->setTriangleVertices(UUIDs.at(ii), v0, v1, v2);
+
3890
+
3891 v0 = triangle_vertices.at(i).at(j);
+
3892 v1 = triangle_vertices.at(i + 1).at(j);
+
3893 v2 = triangle_vertices.at(i + 1).at(j + 1);
+
3894
+
3895 context->setTriangleVertices(UUIDs.at(ii+1), v0, v1, v2);
+
3896
+
3897 ii += 2;
+
3898 }
+
3899 }
+
3900
+
3901}
+
3902
+
+
3903Box::Box(uint a_OID, const std::vector<uint> &a_UUIDs, const int3 &a_subdiv, const char *a_texturefile, helios::Context *a_context) {
+
3904
+
3905 makeIdentityMatrix( transform );
+
3906
+
3907 OID = a_OID;
+
3908 type = helios::OBJECT_TYPE_BOX;
+
3909 UUIDs = a_UUIDs;
+
3910 subdiv = a_subdiv;
+
3911 texturefile = a_texturefile;
+
3912 context = a_context;
3913
-
-
3914float Box::getVolume() const{
-
3915 const vec3 &size = getSize();
-
3916 return size.x * size.y * size.z;
-
3917}
-
-
3918
-
-
3919Disk::Disk(uint a_OID, const std::vector<uint> &a_UUIDs, int2 a_subdiv, const char *a_texturefile, helios::Context *a_context) {
-
3920
-
3921 makeIdentityMatrix( transform );
+
3914}
+
+
3915
+
+
3916Box* Context::getBoxObjectPointer(uint ObjID ) const{
+
3917 if( objects.find(ObjID) == objects.end() ){
+
3918 helios_runtime_error("ERROR (Context::getBoxObjectPointer): ObjectID of " + std::to_string(ObjID) + " does not exist in the Context.");
+
3919 }
+
3920 return dynamic_cast<Box*>(objects.at(ObjID));
+
3921}
+
3922
-
3923 OID = a_OID;
-
3924 type = helios::OBJECT_TYPE_DISK;
-
3925 UUIDs = a_UUIDs;
-
3926 subdiv = a_subdiv;
-
3927 texturefile = a_texturefile;
-
3928 context = a_context;
-
3929
-
3930}
-
-
3931
-
-
3932Disk* Context::getDiskObjectPointer(uint ObjID ) const{
-
3933 if( objects.find(ObjID) == objects.end() ){
-
3934 helios_runtime_error("ERROR (Context::getDiskObjectPointer): ObjectID of " + std::to_string(ObjID) + " does not exist in the Context.");
-
3935 }
-
3936 return dynamic_cast<Disk*>(objects.at(ObjID));
-
3937}
-
-
3938
-
-
3939vec2 Disk::getSize() const{
-
3940
-
3941 vec3 n0(0,0,0), nx(1,0,0), ny(0,1,0);
-
3942 vec3 n0_T, nx_T, ny_T;
+
+
3923vec3 Box::getSize() const{
+
3924
+
3925 vec3 n0(0,0,0), nx(1,0,0), ny(0,1,0), nz(0,0,1);
+
3926
+
3927 vec3 n0_T, nx_T, ny_T, nz_T;
+
3928
+
3929 vecmult(transform,n0,n0_T);
+
3930 vecmult(transform,nx,nx_T);
+
3931 vecmult(transform,ny,ny_T);
+
3932 vecmult(transform,nz,nz_T);
+
3933
+
3934 float x = (nx_T-n0_T).magnitude();
+
3935 float y = (ny_T-n0_T).magnitude();
+
3936 float z = (nz_T-n0_T).magnitude();
+
3937
+
3938 return make_vec3( x, y, z );
+
3939
+
3940}
+
+
3941
+
+
3942vec3 Box::getCenter() const{
3943
-
3944 vecmult(transform,n0,n0_T);
-
3945 vecmult(transform,nx,nx_T);
-
3946 vecmult(transform,ny,ny_T);
-
3947
-
3948 float x = (nx_T-n0_T).magnitude();
-
3949 float y = (ny_T-n0_T).magnitude();
-
3950
-
3951 return make_vec2(x,y);
-
3952
-
3953}
-
-
3954
-
-
3955vec3 Disk::getCenter() const{
-
3956
-
3957 vec3 center;
-
3958 vec3 Y;
-
3959 Y.x = 0.f;
-
3960 Y.y = 0.f;
-
3961 Y.z = 0.f;
-
3962
-
3963 center.x = transform[0] * Y.x + transform[1] * Y.y + transform[2] * Y.z + transform[3];
-
3964 center.y = transform[4] * Y.x + transform[5] * Y.y + transform[6] * Y.z + transform[7];
-
3965 center.z = transform[8] * Y.x + transform[9] * Y.y + transform[10] * Y.z + transform[11];
-
3966
-
3967 return center;
-
3968
+
3944 vec3 center;
+
3945 vec3 Y;
+
3946 Y.x = 0.f;
+
3947 Y.y = 0.f;
+
3948 Y.z = 0.f;
+
3949
+
3950 center.x = transform[0] * Y.x + transform[1] * Y.y + transform[2] * Y.z + transform[3];
+
3951 center.y = transform[4] * Y.x + transform[5] * Y.y + transform[6] * Y.z + transform[7];
+
3952 center.z = transform[8] * Y.x + transform[9] * Y.y + transform[10] * Y.z + transform[11];
+
3953
+
3954 return center;
+
3955
+
3956}
+
+
3957
+
+
3958helios::int3 Box::getSubdivisionCount() const{
+
3959 return subdiv;
+
3960}
+
+
3961
+
+
3962void Box::setSubdivisionCount( const helios::int3 &a_subdiv ){
+
3963 subdiv = a_subdiv;
+
3964}
+
+
3965
+
+
3966float Box::getVolume() const{
+
3967 const vec3 &size = getSize();
+
3968 return size.x * size.y * size.z;
3969}
3970
-
3971int2 Disk::getSubdivisionCount() const{
-
3972 return subdiv;
-
3973}
-
+
3971Disk::Disk(uint a_OID, const std::vector<uint> &a_UUIDs, int2 a_subdiv, const char *a_texturefile, helios::Context *a_context) {
+
3972
+
3973 makeIdentityMatrix( transform );
3974
-
-
3975void Disk::setSubdivisionCount(int2 a_subdiv ){
-
3976 subdiv = a_subdiv;
-
3977}
-
-
3978
-
-
3979Polymesh::Polymesh(uint a_OID, const std::vector<uint> &a_UUIDs, const char *a_texturefile, helios::Context *a_context) {
-
3980
-
3981 makeIdentityMatrix( transform );
-
3982
-
3983 OID = a_OID;
-
3984 type = helios::OBJECT_TYPE_POLYMESH;
-
3985 UUIDs = a_UUIDs;
-
3986 texturefile = a_texturefile;
-
3987 context = a_context;
-
3988
+
3975 OID = a_OID;
+
3976 type = helios::OBJECT_TYPE_DISK;
+
3977 UUIDs = a_UUIDs;
+
3978 subdiv = a_subdiv;
+
3979 texturefile = a_texturefile;
+
3980 context = a_context;
+
3981
+
3982}
+
+
3983
+
+
3984Disk* Context::getDiskObjectPointer(uint ObjID ) const{
+
3985 if( objects.find(ObjID) == objects.end() ){
+
3986 helios_runtime_error("ERROR (Context::getDiskObjectPointer): ObjectID of " + std::to_string(ObjID) + " does not exist in the Context.");
+
3987 }
+
3988 return dynamic_cast<Disk*>(objects.at(ObjID));
3989}
3990
-
3991Polymesh* Context::getPolymeshObjectPointer(uint ObjID ) const{
-
3992 if( objects.find(ObjID) == objects.end() ){
-
3993 helios_runtime_error("ERROR (Context::getPolymeshObjectPointer): ObjectID of " + std::to_string(ObjID) + " does not exist in the Context.");
-
3994 }
-
3995 return dynamic_cast<Polymesh*>(objects.at(ObjID));
-
3996}
-
-
3997
-
-
3998float Polymesh::getVolume() const{
-
3999 float volume = 0.f;
-
4000 for (uint UUID : UUIDs ) {
-
4001 if( context->getPrimitiveType(UUID)==PRIMITIVE_TYPE_TRIANGLE ) {
-
4002 const vec3 &v0 = context->getTriangleVertex(UUID, 0);
-
4003 const vec3 &v1 = context->getTriangleVertex(UUID, 1);
-
4004 const vec3 &v2 = context->getTriangleVertex(UUID, 2);
-
4005 volume += (1.f / 6.f) * v0 * cross(v1,v2);
-
4006 }else if ( context->getPrimitiveType(UUID)==PRIMITIVE_TYPE_PATCH ) {
-
4007 const vec3 &v0 = context->getTriangleVertex(UUID, 0);
-
4008 const vec3 &v1 = context->getTriangleVertex(UUID, 1);
-
4009 const vec3 &v2 = context->getTriangleVertex(UUID, 2);
-
4010 const vec3 &v3 = context->getTriangleVertex(UUID, 3);
-
4011 volume += (1.f / 6.f) * v0 * cross(v1,v2) + (1.f / 6.f) * v0 * cross(v2,v3);
-
4012 }
-
4013 }
-
4014 return std::abs(volume);
-
4015}
-
-
4016
-
-
4017Cone::Cone(uint a_OID, const std::vector<uint> &a_UUIDs, const vec3 &a_node0, const vec3 &a_node1, float a_radius0,
-
4018 float a_radius1, uint a_subdiv, const char *a_texturefile, helios::Context *a_context) {
-
4019
-
4020 makeIdentityMatrix( transform );
-
4021
-
4022 OID = a_OID;
-
4023 type = helios::OBJECT_TYPE_CONE;
-
4024 UUIDs = a_UUIDs;
-
4025 subdiv = a_subdiv;
-
4026 texturefile = a_texturefile;
-
4027 context = a_context;
-
4028 nodes = {a_node0, a_node1};
-
4029 radii = {a_radius0, a_radius1};
-
4030
-
4031}
+
3991vec2 Disk::getSize() const{
+
3992
+
3993 vec3 n0(0,0,0), nx(1,0,0), ny(0,1,0);
+
3994 vec3 n0_T, nx_T, ny_T;
+
3995
+
3996 vecmult(transform,n0,n0_T);
+
3997 vecmult(transform,nx,nx_T);
+
3998 vecmult(transform,ny,ny_T);
+
3999
+
4000 float x = (nx_T-n0_T).magnitude();
+
4001 float y = (ny_T-n0_T).magnitude();
+
4002
+
4003 return make_vec2(x,y);
+
4004
+
4005}
+
+
4006
+
+
4007vec3 Disk::getCenter() const{
+
4008
+
4009 vec3 center;
+
4010 vec3 Y;
+
4011 Y.x = 0.f;
+
4012 Y.y = 0.f;
+
4013 Y.z = 0.f;
+
4014
+
4015 center.x = transform[0] * Y.x + transform[1] * Y.y + transform[2] * Y.z + transform[3];
+
4016 center.y = transform[4] * Y.x + transform[5] * Y.y + transform[6] * Y.z + transform[7];
+
4017 center.z = transform[8] * Y.x + transform[9] * Y.y + transform[10] * Y.z + transform[11];
+
4018
+
4019 return center;
+
4020
+
4021}
+
+
4022
+
+
4023int2 Disk::getSubdivisionCount() const{
+
4024 return subdiv;
+
4025}
+
+
4026
+
+
4027void Disk::setSubdivisionCount(int2 a_subdiv ){
+
4028 subdiv = a_subdiv;
+
4029}
+
4030
+
+
4031Polymesh::Polymesh(uint a_OID, const std::vector<uint> &a_UUIDs, const char *a_texturefile, helios::Context *a_context) {
4032
-
-
4033Cone* Context::getConeObjectPointer( const uint ObjID ) const{
-
4034 if( objects.find(ObjID) == objects.end() ){
-
4035 helios_runtime_error("ERROR (Context::getConeObjectPointer): ObjectID of " + std::to_string(ObjID) + " does not exist in the Context.");
-
4036 }
-
4037 return dynamic_cast<Cone*>(objects.at(ObjID));
-
4038}
-
-
4039
-
-
4040std::vector<helios::vec3> Cone::getNodeCoordinates() const{
-
4041
-
4042 std::vector<vec3> nodes_T;
-
4043 nodes_T.resize( 2 );
-
4044
-
4045 for( int i=0; i<2; i++ ){
-
4046 nodes_T.at(i).x = transform[0] * nodes.at(i).x + transform[1] * nodes.at(i).y + transform[2] * nodes.at(i).z + transform[3];
-
4047 nodes_T.at(i).y = transform[4] * nodes.at(i).x + transform[5] * nodes.at(i).y + transform[6] * nodes.at(i).z + transform[7];
-
4048 nodes_T.at(i).z = transform[8] * nodes.at(i).x + transform[9] * nodes.at(i).y + transform[10] * nodes.at(i).z + transform[11];
-
4049 }
-
4050
-
4051 return nodes_T;
-
4052}
-
-
4053
-
-
4054helios::vec3 Cone::getNodeCoordinate(int node_index ) const{
-
4055
-
4056 if(node_index < 0 || node_index > 1 ){
-
4057 helios_runtime_error("ERROR (Cone::getNodeCoordinate): node number must be 0 or 1.");
-
4058 }
-
4059
-
4060 vec3 node_T;
-
4061
-
4062 node_T.x = transform[0] * nodes.at(node_index).x + transform[1] * nodes.at(node_index).y + transform[2] * nodes.at(node_index).z + transform[3];
-
4063 node_T.y = transform[4] * nodes.at(node_index).x + transform[5] * nodes.at(node_index).y + transform[6] * nodes.at(node_index).z + transform[7];
-
4064 node_T.z = transform[8] * nodes.at(node_index).x + transform[9] * nodes.at(node_index).y + transform[10] * nodes.at(node_index).z + transform[11];
-
4065
-
4066 return node_T;
+
4033 makeIdentityMatrix( transform );
+
4034
+
4035 OID = a_OID;
+
4036 type = helios::OBJECT_TYPE_POLYMESH;
+
4037 UUIDs = a_UUIDs;
+
4038 texturefile = a_texturefile;
+
4039 context = a_context;
+
4040
+
4041}
+
+
4042
+
+
4043Polymesh* Context::getPolymeshObjectPointer(uint ObjID ) const{
+
4044 if( objects.find(ObjID) == objects.end() ){
+
4045 helios_runtime_error("ERROR (Context::getPolymeshObjectPointer): ObjectID of " + std::to_string(ObjID) + " does not exist in the Context.");
+
4046 }
+
4047 return dynamic_cast<Polymesh*>(objects.at(ObjID));
+
4048}
+
+
4049
+
+
4050float Polymesh::getVolume() const{
+
4051 float volume = 0.f;
+
4052 for (uint UUID : UUIDs ) {
+
4053 if( context->getPrimitiveType(UUID)==PRIMITIVE_TYPE_TRIANGLE ) {
+
4054 const vec3 &v0 = context->getTriangleVertex(UUID, 0);
+
4055 const vec3 &v1 = context->getTriangleVertex(UUID, 1);
+
4056 const vec3 &v2 = context->getTriangleVertex(UUID, 2);
+
4057 volume += (1.f / 6.f) * v0 * cross(v1,v2);
+
4058 }else if ( context->getPrimitiveType(UUID)==PRIMITIVE_TYPE_PATCH ) {
+
4059 const vec3 &v0 = context->getTriangleVertex(UUID, 0);
+
4060 const vec3 &v1 = context->getTriangleVertex(UUID, 1);
+
4061 const vec3 &v2 = context->getTriangleVertex(UUID, 2);
+
4062 const vec3 &v3 = context->getTriangleVertex(UUID, 3);
+
4063 volume += (1.f / 6.f) * v0 * cross(v1,v2) + (1.f / 6.f) * v0 * cross(v2,v3);
+
4064 }
+
4065 }
+
4066 return std::abs(volume);
4067}
4068
-
4069std::vector<float> Cone::getNodeRadii() const{
-
4070 return radii;
-
4071}
-
-
4072
-
-
4073float Cone::getNodeRadius( int node_index ) const{
-
4074 if(node_index < 0 || node_index > 1 ){
-
4075 helios_runtime_error("ERROR (Cone::getNodeRadius): node number must be 0 or 1.");
-
4076 }
-
4077
-
4078 return radii.at(node_index);
-
4079}
-
-
4080
-
-
4081uint Cone::getSubdivisionCount() const{
-
4082 return subdiv;
+
4069Cone::Cone(uint a_OID, const std::vector<uint> &a_UUIDs, const vec3 &a_node0, const vec3 &a_node1, float a_radius0,
+
4070 float a_radius1, uint a_subdiv, const char *a_texturefile, helios::Context *a_context) {
+
4071
+
4072 makeIdentityMatrix( transform );
+
4073
+
4074 OID = a_OID;
+
4075 type = helios::OBJECT_TYPE_CONE;
+
4076 UUIDs = a_UUIDs;
+
4077 subdiv = a_subdiv;
+
4078 texturefile = a_texturefile;
+
4079 context = a_context;
+
4080 nodes = {a_node0, a_node1};
+
4081 radii = {a_radius0, a_radius1};
+
4082
4083}
4084
-
4085void Cone::setSubdivisionCount( uint a_subdiv ){
-
4086 subdiv = a_subdiv;
-
4087}
-
-
4088
-
-
4089helios::vec3 Cone::getAxisUnitVector() const{
-
4090
-
4091 std::vector<vec3> nodes_T;
-
4092 nodes_T.resize( 2 );
+
4085Cone* Context::getConeObjectPointer( const uint ObjID ) const{
+
4086 if( objects.find(ObjID) == objects.end() ){
+
4087 helios_runtime_error("ERROR (Context::getConeObjectPointer): ObjectID of " + std::to_string(ObjID) + " does not exist in the Context.");
+
4088 }
+
4089 return dynamic_cast<Cone*>(objects.at(ObjID));
+
4090}
+
+
4091
+
+
4092std::vector<helios::vec3> Cone::getNodeCoordinates() const{
4093
-
4094 for( uint i=0; i<2; i++ ){
-
4095 nodes_T.at(i).x = transform[0] * nodes.at(i).x + transform[1] * nodes.at(i).y + transform[2] * nodes.at(i).z + transform[3];
-
4096 nodes_T.at(i).y = transform[4] * nodes.at(i).x + transform[5] * nodes.at(i).y + transform[6] * nodes.at(i).z + transform[7];
-
4097 nodes_T.at(i).z = transform[8] * nodes.at(i).x + transform[9] * nodes.at(i).y + transform[10] * nodes.at(i).z + transform[11];
-
4098 }
-
4099
-
4100 helios::vec3 axis_unit_vector = helios::make_vec3(nodes_T.at(1).x - nodes_T.at(0).x, nodes_T.at(1).y - nodes_T.at(0).y, nodes_T.at(1).z - nodes_T.at(0).z );
-
4101 float length = powf(powf(axis_unit_vector.x,2) + powf(axis_unit_vector.y,2) + powf(axis_unit_vector.z,2),0.5);
-
4102 axis_unit_vector = axis_unit_vector / length;
-
4103
-
4104 return axis_unit_vector;
-
4105}
-
-
4106
-
-
4107float Cone::getLength() const{
-
4108
-
4109 std::vector<vec3> nodes_T;
-
4110 nodes_T.resize( 2);
+
4094 std::vector<vec3> nodes_T;
+
4095 nodes_T.resize( 2 );
+
4096
+
4097 for( int i=0; i<2; i++ ){
+
4098 nodes_T.at(i).x = transform[0] * nodes.at(i).x + transform[1] * nodes.at(i).y + transform[2] * nodes.at(i).z + transform[3];
+
4099 nodes_T.at(i).y = transform[4] * nodes.at(i).x + transform[5] * nodes.at(i).y + transform[6] * nodes.at(i).z + transform[7];
+
4100 nodes_T.at(i).z = transform[8] * nodes.at(i).x + transform[9] * nodes.at(i).y + transform[10] * nodes.at(i).z + transform[11];
+
4101 }
+
4102
+
4103 return nodes_T;
+
4104}
+
+
4105
+
+
4106helios::vec3 Cone::getNodeCoordinate(int node_index ) const{
+
4107
+
4108 if(node_index < 0 || node_index > 1 ){
+
4109 helios_runtime_error("ERROR (Cone::getNodeCoordinate): node number must be 0 or 1.");
+
4110 }
4111
-
4112 for( uint i=0; i<2; i++ ){
-
4113 nodes_T.at(i).x = transform[0] * nodes.at(i).x + transform[1] * nodes.at(i).y + transform[2] * nodes.at(i).z + transform[3];
-
4114 nodes_T.at(i).y = transform[4] * nodes.at(i).x + transform[5] * nodes.at(i).y + transform[6] * nodes.at(i).z + transform[7];
-
4115 nodes_T.at(i).z = transform[8] * nodes.at(i).x + transform[9] * nodes.at(i).y + transform[10] * nodes.at(i).z + transform[11];
-
4116 }
+
4112 vec3 node_T;
+
4113
+
4114 node_T.x = transform[0] * nodes.at(node_index).x + transform[1] * nodes.at(node_index).y + transform[2] * nodes.at(node_index).z + transform[3];
+
4115 node_T.y = transform[4] * nodes.at(node_index).x + transform[5] * nodes.at(node_index).y + transform[6] * nodes.at(node_index).z + transform[7];
+
4116 node_T.z = transform[8] * nodes.at(node_index).x + transform[9] * nodes.at(node_index).y + transform[10] * nodes.at(node_index).z + transform[11];
4117
-
4118 float length = powf(powf(nodes_T.at(1).x - nodes_T.at(0).x, 2) + powf(nodes_T.at(1).y - nodes_T.at(0).y, 2) + powf(nodes_T.at(1).z - nodes_T.at(0).z, 2), 0.5);
-
4119 return length;
-
4120}
-
-
4121
-
-
4122void Cone::scaleLength( float S ){
-
4123
-
4124 //get the nodes and radii of the nodes with transformation matrix applied
-
4125 const std::vector<helios::vec3> &nodes_T = context->getConeObjectPointer(OID)->getNodeCoordinates();
-
4126 const std::vector<float> &radii_T = context->getConeObjectPointer(OID)->getNodeRadii();
-
4127
-
4128 // calculate the transformed axis unit vector of the cone
-
4129 vec3 axis_unit_vector = helios::make_vec3(nodes_T.at(1).x - nodes_T.at(0).x, nodes_T.at(1).y - nodes_T.at(0).y, nodes_T.at(1).z - nodes_T.at(0).z );
-
4130 float length = powf(powf(axis_unit_vector.x,2) + powf(axis_unit_vector.y,2) + powf(axis_unit_vector.z,2),0.5);
-
4131 axis_unit_vector = axis_unit_vector / length;
+
4118 return node_T;
+
4119}
+
+
4120
+
+
4121std::vector<float> Cone::getNodeRadii() const{
+
4122 return radii;
+
4123}
+
+
4124
+
+
4125float Cone::getNodeRadius( int node_index ) const{
+
4126 if(node_index < 0 || node_index > 1 ){
+
4127 helios_runtime_error("ERROR (Cone::getNodeRadius): node number must be 0 or 1.");
+
4128 }
+
4129
+
4130 return radii.at(node_index);
+
4131}
+
4132
-
4133 //translate node 0 back to origin
-
4134 context->getConeObjectPointer(OID)->translate(-1.0*nodes_T.at(0));
-
4135
-
4136 //rotate the cone to align with z axis
-
4137 helios::vec3 z_axis = make_vec3(0,0,1);
-
4138 //get the axis about which to rotate
-
4139 vec3 ra = cross( z_axis, axis_unit_vector);
-
4140 //get the angle to rotate
-
4141 float dot = axis_unit_vector.x*z_axis.x + axis_unit_vector.y*z_axis.y + axis_unit_vector.z*z_axis.z;
-
4142 float angle = acos_safe(dot);
-
4143
-
4144 //only rotate if the cone is not alread aligned with the z axis (i.e., angle is not zero. If zero, the axis of rotation is 0,0,0 and we end up with problems)
-
4145 if(angle != float(0.0)){
-
4146 context->getConeObjectPointer(OID)->rotate( -1*angle, ra );
-
4147 }
-
4148
-
4149 // scale the cone in the z (length) dimension
-
4150 float T[16], T_prim[16];
-
4151 makeScaleMatrix( make_vec3(1,1,S), T);
-
4152 matmult(T,transform,transform);
-
4153 for( uint UUID : UUIDs){
-
4154 if( context->doesPrimitiveExist( UUID ) ){
-
4155 context->getPrimitiveTransformationMatrix( UUID,T_prim);
-
4156 matmult(T,T_prim,T_prim);
-
4157 context->setPrimitiveTransformationMatrix( UUID,T_prim);
-
4158 }
-
4159 }
+
+
4133uint Cone::getSubdivisionCount() const{
+
4134 return subdiv;
+
4135}
+
+
4136
+
+
4137void Cone::setSubdivisionCount( uint a_subdiv ){
+
4138 subdiv = a_subdiv;
+
4139}
+
+
4140
+
+
4141helios::vec3 Cone::getAxisUnitVector() const{
+
4142
+
4143 std::vector<vec3> nodes_T;
+
4144 nodes_T.resize( 2 );
+
4145
+
4146 for( uint i=0; i<2; i++ ){
+
4147 nodes_T.at(i).x = transform[0] * nodes.at(i).x + transform[1] * nodes.at(i).y + transform[2] * nodes.at(i).z + transform[3];
+
4148 nodes_T.at(i).y = transform[4] * nodes.at(i).x + transform[5] * nodes.at(i).y + transform[6] * nodes.at(i).z + transform[7];
+
4149 nodes_T.at(i).z = transform[8] * nodes.at(i).x + transform[9] * nodes.at(i).y + transform[10] * nodes.at(i).z + transform[11];
+
4150 }
+
4151
+
4152 helios::vec3 axis_unit_vector = helios::make_vec3(nodes_T.at(1).x - nodes_T.at(0).x, nodes_T.at(1).y - nodes_T.at(0).y, nodes_T.at(1).z - nodes_T.at(0).z );
+
4153 float length = powf(powf(axis_unit_vector.x,2) + powf(axis_unit_vector.y,2) + powf(axis_unit_vector.z,2),0.5);
+
4154 axis_unit_vector = axis_unit_vector / length;
+
4155
+
4156 return axis_unit_vector;
+
4157}
+
+
4158
+
+
4159float Cone::getLength() const{
4160
-
4161 //rotate back
-
4162 if(angle != 0.0){
-
4163 context->getConeObjectPointer(OID)->rotate( angle, ra );
-
4164 }
-
4165
-
4166 // translate back
-
4167 context->getConeObjectPointer(OID)->translate(nodes_T.at(0));
-
4168
-
4169}
-
-
4170
-
-
4171void Cone::scaleGirth( float S ){
-
4172
-
4173 //get the nodes and radii of the nodes with transformation matrix applied
-
4174 const std::vector<helios::vec3> &nodes_T = context->getConeObjectPointer(OID)->getNodeCoordinates();
-
4175 const std::vector<float> &radii_T = context->getConeObjectPointer(OID)->getNodeRadii();
-
4176
-
4177 // calculate the transformed axis unit vector of the cone
-
4178 vec3 axis_unit_vector = helios::make_vec3(nodes_T.at(1).x - nodes_T.at(0).x, nodes_T.at(1).y - nodes_T.at(0).y, nodes_T.at(1).z - nodes_T.at(0).z );
-
4179 axis_unit_vector.normalize();
-
4180
-
4181 //translate node 0 back to origin
-
4182 context->getConeObjectPointer(OID)->translate(-1.0*nodes_T.at(0));
-
4183 //rotate the cone to align with z axis
-
4184 helios::vec3 z_axis = make_vec3(0,0,1);
-
4185 //get the axis about which to rotate
-
4186 vec3 ra = cross( z_axis, axis_unit_vector);
-
4187 //get the angle to rotate
-
4188 float dot = axis_unit_vector*z_axis;
-
4189 float angle = acos_safe(dot);
-
4190 //only rotate if the cone is not already aligned with the z axis (i.e., angle is not zero. If zero, the axis of rotation is 0,0,0 and we end up with problems)
-
4191 if(angle != float(0.0)){
-
4192 context->getConeObjectPointer(OID)->rotate( -1*angle, ra );
-
4193 }
-
4194
-
4195 // scale the cone in the x and y dimensions
-
4196 context->scaleObject( OID, make_vec3(S,S,1) );
-
4197
-
4198
-
4199 //rotate back
-
4200 if(angle != 0.0){
-
4201 context->getConeObjectPointer(OID)->rotate( angle, ra );
-
4202 }
-
4203
-
4204 // translate back
-
4205 context->getConeObjectPointer(OID)->translate(nodes_T.at(0));
-
4206
-
4207 radii.at(0) *= S;
-
4208 radii.at(1) *= S;
-
4209
-
4210}
-
-
4211
-
-
4212float Cone::getVolume() const{
-
4213 float r0 = getNodeRadius(0);
-
4214 float r1 = getNodeRadius(1);
-
4215 float h = getLength();
-
4216
-
4217 return M_PI * h / 3.f * (r0*r0 + r0*r1 + r1*r1);
-
4218}
-
-
4219
-
-
4220uint Context::addSphereObject(uint Ndivs, const vec3 &center, float radius ){
-
4221 return addSphereObject(Ndivs,center,{radius,radius,radius},{0.f,0.75f,0.f}); //Default color is green
-
4222}
-
-
4223
-
-
4224uint Context::addSphereObject(uint Ndivs, const vec3 &center, float radius, const RGBcolor &color ){
-
4225 return addSphereObject(Ndivs,center,{radius,radius,radius},color);
-
4226}
-
-
4227
-
-
4228uint Context::addSphereObject(uint Ndivs, const vec3 &center, float radius, const char* texturefile ){
-
4229 return addSphereObject(Ndivs,center,{radius,radius,radius},texturefile);
-
4230}
-
-
4231
-
-
4232uint Context::addSphereObject(uint Ndivs, const vec3 &center, const vec3 &radius ){
-
4233
-
4234 return addSphereObject(Ndivs,center,radius,{0.f,0.75f,0.f}); //Default color is green
-
4235
-
4236}
-
-
4237
-
-
4238uint Context::addSphereObject(uint Ndivs, const vec3 &center, const vec3 &radius, const RGBcolor &color ){
-
4239
-
4240 if( radius.x<=0.f || radius.y<=0.f || radius.z<=0.f ){
-
4241 helios_runtime_error("ERROR (Context::addSphereObject): Radius of sphere must be positive.");
-
4242 }
-
4243
-
4244 std::vector<uint> UUID; //\todo Resize here and avoid using push_back() below.
-
4245
-
4246 float theta;
-
4247 float dtheta=float(M_PI)/float(Ndivs);
-
4248 float dphi=2.0f*float(M_PI)/float(Ndivs);
+
4161 std::vector<vec3> nodes_T;
+
4162 nodes_T.resize( 2);
+
4163
+
4164 for( uint i=0; i<2; i++ ){
+
4165 nodes_T.at(i).x = transform[0] * nodes.at(i).x + transform[1] * nodes.at(i).y + transform[2] * nodes.at(i).z + transform[3];
+
4166 nodes_T.at(i).y = transform[4] * nodes.at(i).x + transform[5] * nodes.at(i).y + transform[6] * nodes.at(i).z + transform[7];
+
4167 nodes_T.at(i).z = transform[8] * nodes.at(i).x + transform[9] * nodes.at(i).y + transform[10] * nodes.at(i).z + transform[11];
+
4168 }
+
4169
+
4170 float length = powf(powf(nodes_T.at(1).x - nodes_T.at(0).x, 2) + powf(nodes_T.at(1).y - nodes_T.at(0).y, 2) + powf(nodes_T.at(1).z - nodes_T.at(0).z, 2), 0.5);
+
4171 return length;
+
4172}
+
+
4173
+
+
4174void Cone::scaleLength( float S ){
+
4175
+
4176 //get the nodes and radii of the nodes with transformation matrix applied
+
4177 const std::vector<helios::vec3> &nodes_T = context->getConeObjectPointer(OID)->getNodeCoordinates();
+
4178 const std::vector<float> &radii_T = context->getConeObjectPointer(OID)->getNodeRadii();
+
4179
+
4180 // calculate the transformed axis unit vector of the cone
+
4181 vec3 axis_unit_vector = helios::make_vec3(nodes_T.at(1).x - nodes_T.at(0).x, nodes_T.at(1).y - nodes_T.at(0).y, nodes_T.at(1).z - nodes_T.at(0).z );
+
4182 float length = powf(powf(axis_unit_vector.x,2) + powf(axis_unit_vector.y,2) + powf(axis_unit_vector.z,2),0.5);
+
4183 axis_unit_vector = axis_unit_vector / length;
+
4184
+
4185 //translate node 0 back to origin
+
4186 context->getConeObjectPointer(OID)->translate(-1.0*nodes_T.at(0));
+
4187
+
4188 //rotate the cone to align with z axis
+
4189 helios::vec3 z_axis = make_vec3(0,0,1);
+
4190 //get the axis about which to rotate
+
4191 vec3 ra = cross( z_axis, axis_unit_vector);
+
4192 //get the angle to rotate
+
4193 float dot = axis_unit_vector.x*z_axis.x + axis_unit_vector.y*z_axis.y + axis_unit_vector.z*z_axis.z;
+
4194 float angle = acos_safe(dot);
+
4195
+
4196 //only rotate if the cone is not alread aligned with the z axis (i.e., angle is not zero. If zero, the axis of rotation is 0,0,0 and we end up with problems)
+
4197 if(angle != float(0.0)){
+
4198 context->getConeObjectPointer(OID)->rotate( -1*angle, ra );
+
4199 }
+
4200
+
4201 // scale the cone in the z (length) dimension
+
4202 float T[16], T_prim[16];
+
4203 makeScaleMatrix( make_vec3(1,1,S), T);
+
4204 matmult(T,transform,transform);
+
4205 for( uint UUID : UUIDs){
+
4206 if( context->doesPrimitiveExist( UUID ) ){
+
4207 context->getPrimitiveTransformationMatrix( UUID,T_prim);
+
4208 matmult(T,T_prim,T_prim);
+
4209 context->setPrimitiveTransformationMatrix( UUID,T_prim);
+
4210 }
+
4211 }
+
4212
+
4213 //rotate back
+
4214 if(angle != 0.0){
+
4215 context->getConeObjectPointer(OID)->rotate( angle, ra );
+
4216 }
+
4217
+
4218 // translate back
+
4219 context->getConeObjectPointer(OID)->translate(nodes_T.at(0));
+
4220
+
4221}
+
+
4222
+
+
4223void Cone::scaleGirth( float S ){
+
4224
+
4225 //get the nodes and radii of the nodes with transformation matrix applied
+
4226 const std::vector<helios::vec3> &nodes_T = context->getConeObjectPointer(OID)->getNodeCoordinates();
+
4227 const std::vector<float> &radii_T = context->getConeObjectPointer(OID)->getNodeRadii();
+
4228
+
4229 // calculate the transformed axis unit vector of the cone
+
4230 vec3 axis_unit_vector = helios::make_vec3(nodes_T.at(1).x - nodes_T.at(0).x, nodes_T.at(1).y - nodes_T.at(0).y, nodes_T.at(1).z - nodes_T.at(0).z );
+
4231 axis_unit_vector.normalize();
+
4232
+
4233 //translate node 0 back to origin
+
4234 context->getConeObjectPointer(OID)->translate(-1.0*nodes_T.at(0));
+
4235 //rotate the cone to align with z axis
+
4236 helios::vec3 z_axis = make_vec3(0,0,1);
+
4237 //get the axis about which to rotate
+
4238 vec3 ra = cross( z_axis, axis_unit_vector);
+
4239 //get the angle to rotate
+
4240 float dot = axis_unit_vector*z_axis;
+
4241 float angle = acos_safe(dot);
+
4242 //only rotate if the cone is not already aligned with the z axis (i.e., angle is not zero. If zero, the axis of rotation is 0,0,0 and we end up with problems)
+
4243 if(angle != float(0.0)){
+
4244 context->getConeObjectPointer(OID)->rotate( -1*angle, ra );
+
4245 }
+
4246
+
4247 // scale the cone in the x and y dimensions
+
4248 context->scaleObject( OID, make_vec3(S,S,1) );
4249
-
4250 vec3 cart;
-
4251
-
4252 //bottom cap
-
4253 for( int j=0; j<Ndivs; j++ ){
-
4254
-
4255 cart = sphere2cart( make_SphericalCoord(1.f, -0.5f*float(M_PI), 0 ) );
-
4256 vec3 v0 = center + make_vec3(cart.x*radius.x,cart.y*radius.y,cart.z*radius.z);
-
4257 cart = sphere2cart( make_SphericalCoord(1.f, -0.5f*float(M_PI)+dtheta, float(j)*dphi ) );
-
4258 vec3 v1 = center + make_vec3(cart.x*radius.x,cart.y*radius.y,cart.z*radius.z);
-
4259 cart = sphere2cart( make_SphericalCoord(1.f, -0.5f*float(M_PI)+dtheta, float(j+1)*dphi ) );
-
4260 vec3 v2 = center + make_vec3(cart.x*radius.x,cart.y*radius.y,cart.z*radius.z);
+
4250
+
4251 //rotate back
+
4252 if(angle != 0.0){
+
4253 context->getConeObjectPointer(OID)->rotate( angle, ra );
+
4254 }
+
4255
+
4256 // translate back
+
4257 context->getConeObjectPointer(OID)->translate(nodes_T.at(0));
+
4258
+
4259 radii.at(0) *= S;
+
4260 radii.at(1) *= S;
4261
-
4262 UUID.push_back( addTriangle(v0,v1,v2,color) );
+
4262}
+
4263
-
4264 }
-
4265
-
4266 //top cap
-
4267 for( int j=0; j<Ndivs; j++ ){
+
+
4264float Cone::getVolume() const{
+
4265 float r0 = getNodeRadius(0);
+
4266 float r1 = getNodeRadius(1);
+
4267 float h = getLength();
4268
-
4269 cart = sphere2cart( make_SphericalCoord(1.f, 0.5f*float(M_PI), 0 ) );
-
4270 vec3 v0 = center + make_vec3(cart.x*radius.x,cart.y*radius.y,cart.z*radius.z);
-
4271 cart = sphere2cart( make_SphericalCoord(1.f, 0.5f*float(M_PI)-dtheta, float(j)*dphi ) );
-
4272 vec3 v1 = center + make_vec3(cart.x*radius.x,cart.y*radius.y,cart.z*radius.z);
-
4273 cart = sphere2cart( make_SphericalCoord(1.f, 0.5f*float(M_PI)-dtheta, float(j+1)*dphi ) );
-
4274 vec3 v2 = center + make_vec3(cart.x*radius.x,cart.y*radius.y,cart.z*radius.z);
+
4269 return M_PI * h / 3.f * (r0*r0 + r0*r1 + r1*r1);
+
4270}
+
+
4271
+
+
4272uint Context::addSphereObject(uint Ndivs, const vec3 &center, float radius ){
+
4273 return addSphereObject(Ndivs,center,{radius,radius,radius},{0.f,0.75f,0.f}); //Default color is green
+
4274}
+
4275
-
4276 UUID.push_back( addTriangle(v2,v1,v0,color) );
-
4277
-
4278 }
+
+
4276uint Context::addSphereObject(uint Ndivs, const vec3 &center, float radius, const RGBcolor &color ){
+
4277 return addSphereObject(Ndivs,center,{radius,radius,radius},color);
+
4278}
+
4279
-
4280 //middle
-
4281 for( int j=0; j<Ndivs; j++ ){
-
4282 for( int i=1; i<Ndivs-1; i++ ){
+
+
4280uint Context::addSphereObject(uint Ndivs, const vec3 &center, float radius, const char* texturefile ){
+
4281 return addSphereObject(Ndivs,center,{radius,radius,radius},texturefile);
+
4282}
+
4283
-
4284 cart = sphere2cart( make_SphericalCoord(1.f, -0.5f*float(M_PI)+float(i)*dtheta, float(j)*dphi ) );
-
4285 vec3 v0 = center + make_vec3(cart.x*radius.x,cart.y*radius.y,cart.z*radius.z);
-
4286 cart = sphere2cart( make_SphericalCoord(1.f, -0.5f*float(M_PI)+float(i+1)*dtheta, float(j)*dphi ) );
-
4287 vec3 v1 = center + make_vec3(cart.x*radius.x,cart.y*radius.y,cart.z*radius.z);
-
4288 cart = sphere2cart( make_SphericalCoord(1.f, -0.5f*float(M_PI)+float(i+1)*dtheta, float(j+1)*dphi ) );
-
4289 vec3 v2 = center + make_vec3(cart.x*radius.x,cart.y*radius.y,cart.z*radius.z);
-
4290 cart = sphere2cart( make_SphericalCoord(1.f, -0.5f*float(M_PI)+float(i)*dtheta, float(j+1)*dphi ) );
-
4291 vec3 v3 = center + make_vec3(cart.x*radius.x,cart.y*radius.y,cart.z*radius.z);
-
4292
-
4293 UUID.push_back( addTriangle(v0,v1,v2,color) );
-
4294 UUID.push_back( addTriangle(v0,v2,v3,color) );
+
+
4284uint Context::addSphereObject(uint Ndivs, const vec3 &center, const vec3 &radius ){
+
4285
+
4286 return addSphereObject(Ndivs,center,radius,{0.f,0.75f,0.f}); //Default color is green
+
4287
+
4288}
+
+
4289
+
+
4290uint Context::addSphereObject(uint Ndivs, const vec3 &center, const vec3 &radius, const RGBcolor &color ){
+
4291
+
4292 if( radius.x<=0.f || radius.y<=0.f || radius.z<=0.f ){
+
4293 helios_runtime_error("ERROR (Context::addSphereObject): Radius of sphere must be positive.");
+
4294 }
4295
-
4296 }
-
4297 }
-
4298
-
4299 auto* sphere_new = (new Sphere(currentObjectID, UUID, Ndivs, "", this));
-
4300
-
4301 float T[16], transform[16];
-
4302 sphere_new->getTransformationMatrix( transform );
+
4296 std::vector<uint> UUID; //\todo Resize here and avoid using push_back() below.
+
4297
+
4298 float theta;
+
4299 float dtheta=float(M_PI)/float(Ndivs);
+
4300 float dphi=2.0f*float(M_PI)/float(Ndivs);
+
4301
+
4302 vec3 cart;
4303
-
4304 makeScaleMatrix(radius,T);
-
4305 matmult(T,transform,transform);
+
4304 //bottom cap
+
4305 for( int j=0; j<Ndivs; j++ ){
4306
-
4307 makeTranslationMatrix(center,T);
-
4308 matmult(T,transform,transform);
-
4309 sphere_new->setTransformationMatrix( transform );
-
4310
-
4311 sphere_new->setColor( color );
-
4312
-
4313 for( uint p : UUID){
-
4314 getPrimitivePointer_private(p)->setParentObjectID(currentObjectID);
-
4315 }
-
4316
-
4317 objects[currentObjectID] = sphere_new;
-
4318 currentObjectID++;
-
4319 return currentObjectID-1;
+
4307 cart = sphere2cart( make_SphericalCoord(1.f, -0.5f*float(M_PI), 0 ) );
+
4308 vec3 v0 = center + make_vec3(cart.x*radius.x,cart.y*radius.y,cart.z*radius.z);
+
4309 cart = sphere2cart( make_SphericalCoord(1.f, -0.5f*float(M_PI)+dtheta, float(j)*dphi ) );
+
4310 vec3 v1 = center + make_vec3(cart.x*radius.x,cart.y*radius.y,cart.z*radius.z);
+
4311 cart = sphere2cart( make_SphericalCoord(1.f, -0.5f*float(M_PI)+dtheta, float(j+1)*dphi ) );
+
4312 vec3 v2 = center + make_vec3(cart.x*radius.x,cart.y*radius.y,cart.z*radius.z);
+
4313
+
4314 UUID.push_back( addTriangle(v0,v1,v2,color) );
+
4315
+
4316 }
+
4317
+
4318 //top cap
+
4319 for( int j=0; j<Ndivs; j++ ){
4320
-
4321}
-
-
4322
-
-
4323uint Context::addSphereObject(uint Ndivs, const vec3 &center, const vec3 &radius, const char* texturefile ){
-
4324
-
4325 if( !validateTextureFileExtenstion(texturefile) ) {
-
4326 helios_runtime_error("ERROR (Context::addSphereObject): Texture file " + std::string(texturefile) + " is not PNG or JPEG format.");
-
4327 }else if( !doesTextureFileExist(texturefile) ) {
-
4328 helios_runtime_error("ERROR (Context::addSphereObject): Texture file " + std::string(texturefile) + " does not exist.");
-
4329 }else if( radius.x<=0.f || radius.y<=0.f || radius.z<=0.f ){
-
4330 helios_runtime_error("ERROR (Context::addSphereObject): Radius of sphere must be positive.");
-
4331 }
-
4332
-
4333 std::vector<uint> UUID; //\todo Resize here and avoid using push_back() below.
-
4334
-
4335 float theta;
-
4336 float dtheta=float(M_PI)/float(Ndivs);
-
4337 float dphi=2.0f*float(M_PI)/float(Ndivs);
-
4338
-
4339 vec3 cart;
-
4340
-
4341 //bottom cap
-
4342 for( int j=0; j<Ndivs; j++ ){
-
4343
-
4344 cart = sphere2cart( make_SphericalCoord(1.f, -0.5f*float(M_PI), 0 ) );
-
4345 vec3 v0 = center + make_vec3(cart.x*radius.x,cart.y*radius.y,cart.z*radius.z);
-
4346 cart = sphere2cart( make_SphericalCoord(1.f, -0.5f*float(M_PI)+dtheta, float(j)*dphi ) );
-
4347 vec3 v1 = center + make_vec3(cart.x*radius.x,cart.y*radius.y,cart.z*radius.z);
-
4348 cart = sphere2cart( make_SphericalCoord(1.f, -0.5f*float(M_PI)+dtheta, float(j+1)*dphi ) );
-
4349 vec3 v2 = center + make_vec3(cart.x*radius.x,cart.y*radius.y,cart.z*radius.z);
+
4321 cart = sphere2cart( make_SphericalCoord(1.f, 0.5f*float(M_PI), 0 ) );
+
4322 vec3 v0 = center + make_vec3(cart.x*radius.x,cart.y*radius.y,cart.z*radius.z);
+
4323 cart = sphere2cart( make_SphericalCoord(1.f, 0.5f*float(M_PI)-dtheta, float(j)*dphi ) );
+
4324 vec3 v1 = center + make_vec3(cart.x*radius.x,cart.y*radius.y,cart.z*radius.z);
+
4325 cart = sphere2cart( make_SphericalCoord(1.f, 0.5f*float(M_PI)-dtheta, float(j+1)*dphi ) );
+
4326 vec3 v2 = center + make_vec3(cart.x*radius.x,cart.y*radius.y,cart.z*radius.z);
+
4327
+
4328 UUID.push_back( addTriangle(v2,v1,v0,color) );
+
4329
+
4330 }
+
4331
+
4332 //middle
+
4333 for( int j=0; j<Ndivs; j++ ){
+
4334 for( int i=1; i<Ndivs-1; i++ ){
+
4335
+
4336 cart = sphere2cart( make_SphericalCoord(1.f, -0.5f*float(M_PI)+float(i)*dtheta, float(j)*dphi ) );
+
4337 vec3 v0 = center + make_vec3(cart.x*radius.x,cart.y*radius.y,cart.z*radius.z);
+
4338 cart = sphere2cart( make_SphericalCoord(1.f, -0.5f*float(M_PI)+float(i+1)*dtheta, float(j)*dphi ) );
+
4339 vec3 v1 = center + make_vec3(cart.x*radius.x,cart.y*radius.y,cart.z*radius.z);
+
4340 cart = sphere2cart( make_SphericalCoord(1.f, -0.5f*float(M_PI)+float(i+1)*dtheta, float(j+1)*dphi ) );
+
4341 vec3 v2 = center + make_vec3(cart.x*radius.x,cart.y*radius.y,cart.z*radius.z);
+
4342 cart = sphere2cart( make_SphericalCoord(1.f, -0.5f*float(M_PI)+float(i)*dtheta, float(j+1)*dphi ) );
+
4343 vec3 v3 = center + make_vec3(cart.x*radius.x,cart.y*radius.y,cart.z*radius.z);
+
4344
+
4345 UUID.push_back( addTriangle(v0,v1,v2,color) );
+
4346 UUID.push_back( addTriangle(v0,v2,v3,color) );
+
4347
+
4348 }
+
4349 }
4350
-
4351 vec3 n0 = v0-center;
-
4352 n0.normalize();
-
4353 vec3 n1 = v1-center;
-
4354 n1.normalize();
-
4355 vec3 n2 = v2-center;
-
4356 n2.normalize();
-
4357
-
4358 vec2 uv0 = make_vec2( 1.f - atan2f( sinf((float(j)+0.5f)*dphi), -cosf((float(j)+0.5f)*dphi) )/float(2.f*M_PI) - 0.5f, 1.f - n0.z*0.5f - 0.5f );
-
4359 vec2 uv1 = make_vec2( 1.f - atan2f( n1.x, -n1.y )/float(2.f*M_PI) - 0.5f, 1.f - n1.z*0.5f - 0.5f );
-
4360 vec2 uv2 = make_vec2( 1.f - atan2f( n2.x, -n2.y )/float(2.f*M_PI) - 0.5f, 1.f - n2.z*0.5f - 0.5f );
-
4361
-
4362 if( j==Ndivs-1 ){
-
4363 uv2.x = 1;
-
4364 }
-
4365
-
4366 UUID.push_back( addTriangle(v0,v1,v2,texturefile,uv0,uv1,uv2) );
-
4367
-
4368 }
-
4369
-
4370 //top cap
-
4371 for( int j=0; j<Ndivs; j++ ){
+
4351 auto* sphere_new = (new Sphere(currentObjectID, UUID, Ndivs, "", this));
+
4352
+
4353 float T[16], transform[16];
+
4354 sphere_new->getTransformationMatrix( transform );
+
4355
+
4356 makeScaleMatrix(radius,T);
+
4357 matmult(T,transform,transform);
+
4358
+
4359 makeTranslationMatrix(center,T);
+
4360 matmult(T,transform,transform);
+
4361 sphere_new->setTransformationMatrix( transform );
+
4362
+
4363 sphere_new->setColor( color );
+
4364
+
4365 for( uint p : UUID){
+
4366 getPrimitivePointer_private(p)->setParentObjectID(currentObjectID);
+
4367 }
+
4368
+
4369 objects[currentObjectID] = sphere_new;
+
4370 currentObjectID++;
+
4371 return currentObjectID-1;
4372
-
4373 cart = sphere2cart( make_SphericalCoord(1.f, 0.5f*float(M_PI), 0 ) );
-
4374 vec3 v0 = center + make_vec3(cart.x*radius.x,cart.y*radius.y,cart.z*radius.z);
-
4375 cart = sphere2cart( make_SphericalCoord(1.f, 0.5f*float(M_PI)-dtheta, float(j)*dphi ) );
-
4376 vec3 v1 = center + make_vec3(cart.x*radius.x,cart.y*radius.y,cart.z*radius.z);
-
4377 cart = sphere2cart( make_SphericalCoord(1.f, 0.5f*float(M_PI)-dtheta, float(j+1)*dphi ) );
-
4378 vec3 v2 = center + make_vec3(cart.x*radius.x,cart.y*radius.y,cart.z*radius.z);
-
4379
-
4380 vec3 n0 = v0-center;
-
4381 n0.normalize();
-
4382 vec3 n1 = v1-center;
-
4383 n1.normalize();
-
4384 vec3 n2 = v2-center;
-
4385 n2.normalize();
+
4373}
+
+
4374
+
+
4375uint Context::addSphereObject(uint Ndivs, const vec3 &center, const vec3 &radius, const char* texturefile ){
+
4376
+
4377 if( !validateTextureFileExtenstion(texturefile) ) {
+
4378 helios_runtime_error("ERROR (Context::addSphereObject): Texture file " + std::string(texturefile) + " is not PNG or JPEG format.");
+
4379 }else if( !doesTextureFileExist(texturefile) ) {
+
4380 helios_runtime_error("ERROR (Context::addSphereObject): Texture file " + std::string(texturefile) + " does not exist.");
+
4381 }else if( radius.x<=0.f || radius.y<=0.f || radius.z<=0.f ){
+
4382 helios_runtime_error("ERROR (Context::addSphereObject): Radius of sphere must be positive.");
+
4383 }
+
4384
+
4385 std::vector<uint> UUID; //\todo Resize here and avoid using push_back() below.
4386
-
4387 vec2 uv0 = make_vec2( 1.f - atan2f( sin((float(j)+0.5f)*dphi), -cos((float(j)+0.5f)*dphi) )/float(2.f*M_PI) - 0.5f, 1.f - n0.z*0.5f - 0.5f );
-
4388 vec2 uv1 = make_vec2( 1.f - atan2f( n1.x, -n1.y )/float(2.f*M_PI) - 0.5f, 1.f - n1.z*0.5f - 0.5f );
-
4389 vec2 uv2 = make_vec2( 1.f - atan2f( n2.x, -n2.y )/float(2.f*M_PI) - 0.5f, 1.f - n2.z*0.5f - 0.5f );
+
4387 float theta;
+
4388 float dtheta=float(M_PI)/float(Ndivs);
+
4389 float dphi=2.0f*float(M_PI)/float(Ndivs);
4390
-
4391 if( j==Ndivs-1 ){
-
4392 uv2.x = 1;
-
4393 }
-
4394
-
4395 UUID.push_back( addTriangle(v0,v1,v2,texturefile,uv0,uv1,uv2) );
-
4396
-
4397 }
-
4398
-
4399 //middle
-
4400 for( int j=0; j<Ndivs; j++ ){
-
4401 for( int i=1; i<Ndivs-1; i++ ){
+
4391 vec3 cart;
+
4392
+
4393 //bottom cap
+
4394 for( int j=0; j<Ndivs; j++ ){
+
4395
+
4396 cart = sphere2cart( make_SphericalCoord(1.f, -0.5f*float(M_PI), 0 ) );
+
4397 vec3 v0 = center + make_vec3(cart.x*radius.x,cart.y*radius.y,cart.z*radius.z);
+
4398 cart = sphere2cart( make_SphericalCoord(1.f, -0.5f*float(M_PI)+dtheta, float(j)*dphi ) );
+
4399 vec3 v1 = center + make_vec3(cart.x*radius.x,cart.y*radius.y,cart.z*radius.z);
+
4400 cart = sphere2cart( make_SphericalCoord(1.f, -0.5f*float(M_PI)+dtheta, float(j+1)*dphi ) );
+
4401 vec3 v2 = center + make_vec3(cart.x*radius.x,cart.y*radius.y,cart.z*radius.z);
4402
-
4403 cart = sphere2cart( make_SphericalCoord(1.f, -0.5f*float(M_PI)+float(i)*dtheta, float(j)*dphi ) );
-
4404 vec3 v0 = center + make_vec3(cart.x*radius.x,cart.y*radius.y,cart.z*radius.z);
-
4405 cart = sphere2cart( make_SphericalCoord(1.f, -0.5f*float(M_PI)+float(i+1)*dtheta, float(j)*dphi ) );
-
4406 vec3 v1 = center + make_vec3(cart.x*radius.x,cart.y*radius.y,cart.z*radius.z);
-
4407 cart = sphere2cart( make_SphericalCoord(1.f, -0.5f*float(M_PI)+float(i+1)*dtheta, float(j+1)*dphi ) );
-
4408 vec3 v2 = center + make_vec3(cart.x*radius.x,cart.y*radius.y,cart.z*radius.z);
-
4409 cart = sphere2cart( make_SphericalCoord(1.f, -0.5f*float(M_PI)+float(i)*dtheta, float(j+1)*dphi ) );
-
4410 vec3 v3 = center + make_vec3(cart.x*radius.x,cart.y*radius.y,cart.z*radius.z);
-
4411
-
4412 vec3 n0 = v0-center;
-
4413 n0.normalize();
-
4414 vec3 n1 = v1-center;
-
4415 n1.normalize();
-
4416 vec3 n2 = v2-center;
-
4417 n2.normalize();
-
4418 vec3 n3 = v3-center;
-
4419 n3.normalize();
-
4420
-
4421 vec2 uv0 = make_vec2( 1.f - atan2f( n0.x, -n0.y )/float(2.f*M_PI) - 0.5f, 1.f - n0.z*0.5f - 0.5f );
-
4422 vec2 uv1 = make_vec2( 1.f - atan2f( n1.x, -n1.y )/float(2.f*M_PI) - 0.5f, 1.f - n1.z*0.5f - 0.5f );
-
4423 vec2 uv2 = make_vec2( 1.f - atan2f( n2.x, -n2.y )/float(2.f*M_PI) - 0.5f, 1.f - n2.z*0.5f - 0.5f );
-
4424 vec2 uv3 = make_vec2( 1.f - atan2f( n3.x, -n3.y )/float(2.f*M_PI) - 0.5f, 1.f - n3.z*0.5f - 0.5f );
-
4425
-
4426 if( j==Ndivs-1 ){
-
4427 uv2.x = 1;
-
4428 uv3.x = 1;
-
4429 }
-
4430
-
4431 UUID.push_back( addTriangle(v0,v1,v2,texturefile,uv0,uv1,uv2) );
-
4432 UUID.push_back( addTriangle(v0,v2,v3,texturefile,uv0,uv2,uv3) );
-
4433
-
4434 }
-
4435 }
-
4436
-
4437 auto* sphere_new = (new Sphere(currentObjectID, UUID, Ndivs, texturefile, this));
+
4403 vec3 n0 = v0-center;
+
4404 n0.normalize();
+
4405 vec3 n1 = v1-center;
+
4406 n1.normalize();
+
4407 vec3 n2 = v2-center;
+
4408 n2.normalize();
+
4409
+
4410 vec2 uv0 = make_vec2( 1.f - atan2f( sinf((float(j)+0.5f)*dphi), -cosf((float(j)+0.5f)*dphi) )/float(2.f*M_PI) - 0.5f, 1.f - n0.z*0.5f - 0.5f );
+
4411 vec2 uv1 = make_vec2( 1.f - atan2f( n1.x, -n1.y )/float(2.f*M_PI) - 0.5f, 1.f - n1.z*0.5f - 0.5f );
+
4412 vec2 uv2 = make_vec2( 1.f - atan2f( n2.x, -n2.y )/float(2.f*M_PI) - 0.5f, 1.f - n2.z*0.5f - 0.5f );
+
4413
+
4414 if( j==Ndivs-1 ){
+
4415 uv2.x = 1;
+
4416 }
+
4417
+
4418 UUID.push_back( addTriangle(v0,v1,v2,texturefile,uv0,uv1,uv2) );
+
4419
+
4420 }
+
4421
+
4422 //top cap
+
4423 for( int j=0; j<Ndivs; j++ ){
+
4424
+
4425 vec3 cart = sphere2cart( make_SphericalCoord(1.f, 0.5f*float(M_PI), 0 ) );
+
4426 vec3 v0 = center + make_vec3(cart.x*radius.x,cart.y*radius.y,cart.z*radius.z);
+
4427 cart = sphere2cart( make_SphericalCoord(1.f, 0.5f*float(M_PI)-dtheta, float(j+1)*dphi ) );
+
4428 vec3 v1 = center + make_vec3(cart.x*radius.x,cart.y*radius.y,cart.z*radius.z);
+
4429 cart = sphere2cart( make_SphericalCoord(1.f, 0.5f*float(M_PI)-dtheta, float(j)*dphi ) );
+
4430 vec3 v2 = center + make_vec3(cart.x*radius.x,cart.y*radius.y,cart.z*radius.z);;
+
4431
+
4432 vec3 n0 = v0-center;
+
4433 n0.normalize();
+
4434 vec3 n1 = v1-center;
+
4435 n1.normalize();
+
4436 vec3 n2 = v2-center;
+
4437 n2.normalize();
4438
-
4439 float T[16], transform[16];
-
4440 sphere_new->getTransformationMatrix( transform );
-
4441
-
4442 makeScaleMatrix(radius,T);
-
4443 matmult(T,transform,transform);
-
4444
-
4445 makeTranslationMatrix(center,T);
-
4446 matmult(T,transform,transform);
-
4447 sphere_new->setTransformationMatrix( transform );
+
4439 vec2 uv0 = make_vec2( 1.f - atan2f( sinf((float(j)+0.5f)*dphi), -cosf((float(j)+0.5f)*dphi) )/float(2.f*M_PI) - 0.5f, 1.f - n0.z*0.5f - 0.5f );
+
4440 vec2 uv1 = make_vec2( 1.f - atan2f( n1.x, -n1.y )/float(2.f*M_PI) - 0.5f, 1.f - n1.z*0.5f - 0.5f );
+
4441 vec2 uv2 = make_vec2( 1.f - atan2f( n2.x, -n2.y )/float(2.f*M_PI) - 0.5f, 1.f - n2.z*0.5f - 0.5f );
+
4442
+
4443 if( j==Ndivs-1 ){
+
4444 uv2.x = 1;
+
4445 }
+
4446
+
4447 UUID.push_back( addTriangle(v0,v1,v2,texturefile,uv0,uv1,uv2) );
4448
-
4449 for( uint p : UUID){
-
4450 getPrimitivePointer_private(p)->setParentObjectID(currentObjectID);
-
4451 }
-
4452
-
4453 objects[currentObjectID] = sphere_new;
-
4454 currentObjectID++;
-
4455
-
4456 return currentObjectID-1;
-
4457
-
4458}
-
-
4459
-
-
4460uint Context::addTileObject(const vec3 &center, const vec2 &size, const SphericalCoord &rotation, const int2 &subdiv) {
-
4461
-
4462 RGBcolor color = make_RGBcolor(0.f,0.75f,0.f); //Default color is green
+
4449 }
+
4450
+
4451 //middle
+
4452 for( int j=0; j<Ndivs; j++ ){
+
4453 for( int i=1; i<Ndivs-1; i++ ){
+
4454
+
4455 cart = sphere2cart( make_SphericalCoord(1.f, -0.5f*float(M_PI)+float(i)*dtheta, float(j)*dphi ) );
+
4456 vec3 v0 = center + make_vec3(cart.x*radius.x,cart.y*radius.y,cart.z*radius.z);
+
4457 cart = sphere2cart( make_SphericalCoord(1.f, -0.5f*float(M_PI)+float(i+1)*dtheta, float(j)*dphi ) );
+
4458 vec3 v1 = center + make_vec3(cart.x*radius.x,cart.y*radius.y,cart.z*radius.z);
+
4459 cart = sphere2cart( make_SphericalCoord(1.f, -0.5f*float(M_PI)+float(i+1)*dtheta, float(j+1)*dphi ) );
+
4460 vec3 v2 = center + make_vec3(cart.x*radius.x,cart.y*radius.y,cart.z*radius.z);
+
4461 cart = sphere2cart( make_SphericalCoord(1.f, -0.5f*float(M_PI)+float(i)*dtheta, float(j+1)*dphi ) );
+
4462 vec3 v3 = center + make_vec3(cart.x*radius.x,cart.y*radius.y,cart.z*radius.z);
4463
-
4464 return addTileObject(center,size,rotation,subdiv,color);
-
4465}
-
-
4466
-
-
4467uint Context::addTileObject(const vec3 &center, const vec2 &size, const SphericalCoord &rotation, const int2 &subdiv, const RGBcolor &color ){
-
4468
-
4469 if( size.x==0 || size.y==0 ){
-
4470 helios_runtime_error("ERROR (Context::addTileObject): Size of tile must be greater than 0.");
-
4471 }else if( subdiv.x<1 || subdiv.y<1 ){
-
4472 helios_runtime_error("ERROR (Context::addTileObject): Number of tile subdivisions must be greater than 0.");
-
4473 }
-
4474
-
4475 std::vector<uint> UUID; //\todo Resize here and avoid using push_back() below.
-
4476
-
4477 vec2 subsize;
-
4478 subsize.x = size.x/float(subdiv.x);
-
4479 subsize.y = size.y/float(subdiv.y);
-
4480
-
4481 vec3 subcenter;
+
4464 vec3 n0 = v0-center;
+
4465 n0.normalize();
+
4466 vec3 n1 = v1-center;
+
4467 n1.normalize();
+
4468 vec3 n2 = v2-center;
+
4469 n2.normalize();
+
4470 vec3 n3 = v3-center;
+
4471 n3.normalize();
+
4472
+
4473 vec2 uv0 = make_vec2( 1.f - atan2f( n0.x, -n0.y )/float(2.f*M_PI) - 0.5f, 1.f - n0.z*0.5f - 0.5f );
+
4474 vec2 uv1 = make_vec2( 1.f - atan2f( n1.x, -n1.y )/float(2.f*M_PI) - 0.5f, 1.f - n1.z*0.5f - 0.5f );
+
4475 vec2 uv2 = make_vec2( 1.f - atan2f( n2.x, -n2.y )/float(2.f*M_PI) - 0.5f, 1.f - n2.z*0.5f - 0.5f );
+
4476 vec2 uv3 = make_vec2( 1.f - atan2f( n3.x, -n3.y )/float(2.f*M_PI) - 0.5f, 1.f - n3.z*0.5f - 0.5f );
+
4477
+
4478 if( j==Ndivs-1 ){
+
4479 uv2.x = 1;
+
4480 uv3.x = 1;
+
4481 }
4482
-
4483 for( uint j=0; j<subdiv.y; j++ ){
-
4484 for( uint i=0; i<subdiv.x; i++ ){
+
4483 UUID.push_back( addTriangle(v0,v1,v2,texturefile,uv0,uv1,uv2) );
+
4484 UUID.push_back( addTriangle(v0,v2,v3,texturefile,uv0,uv2,uv3) );
4485
-
4486 subcenter = make_vec3(-0.5f*size.x+(float(i)+0.5f)*subsize.x,-0.5f*size.y+(float(j)+0.5f)*subsize.y,0.f);
-
4487
-
4488 UUID.push_back( addPatch( subcenter, subsize, make_SphericalCoord(0,0), color ) );
-
4489
-
4490 if( rotation.elevation!=0.f ){
-
4491 getPrimitivePointer_private( UUID.back() )->rotate( -rotation.elevation, "x" );
-
4492 }
-
4493 if( rotation.azimuth!=0.f ){
-
4494 getPrimitivePointer_private( UUID.back() )->rotate( -rotation.azimuth, "z" );
-
4495 }
-
4496 getPrimitivePointer_private( UUID.back() )->translate( center );
-
4497
-
4498 }
-
4499 }
+
4486 }
+
4487 }
+
4488
+
4489 auto* sphere_new = (new Sphere(currentObjectID, UUID, Ndivs, texturefile, this));
+
4490
+
4491 float T[16], transform[16];
+
4492 sphere_new->getTransformationMatrix( transform );
+
4493
+
4494 makeScaleMatrix(radius,T);
+
4495 matmult(T,transform,transform);
+
4496
+
4497 makeTranslationMatrix(center,T);
+
4498 matmult(T,transform,transform);
+
4499 sphere_new->setTransformationMatrix( transform );
4500
-
4501 auto* tile_new = (new Tile(currentObjectID, UUID, subdiv, "", this));
-
4502
-
4503 float T[16], S[16], R[16];
+
4501 for( uint p : UUID){
+
4502 getPrimitivePointer_private(p)->setParentObjectID(currentObjectID);
+
4503 }
4504
-
4505 float transform[16];
-
4506 tile_new->getTransformationMatrix( transform );
+
4505 objects[currentObjectID] = sphere_new;
+
4506 currentObjectID++;
4507
-
4508 makeScaleMatrix(make_vec3(size.x,size.y,1.f),S);
-
4509 matmult(S,transform,transform);
-
4510
-
4511 makeRotationMatrix( -rotation.elevation,"x",R);
-
4512 matmult(R,transform,transform);
-
4513 makeRotationMatrix( -rotation.azimuth,"z",R);
-
4514 matmult(R,transform,transform);
+
4508 return currentObjectID-1;
+
4509
+
4510}
+
+
4511
+
+
4512uint Context::addTileObject(const vec3 &center, const vec2 &size, const SphericalCoord &rotation, const int2 &subdiv) {
+
4513
+
4514 RGBcolor color = make_RGBcolor(0.f,0.75f,0.f); //Default color is green
4515
-
4516 makeTranslationMatrix(center,T);
-
4517 matmult(T,transform,transform);
-
4518 tile_new->setTransformationMatrix( transform );
-
4519
-
4520 tile_new->setColor( color );
-
4521
-
4522 for( uint p : UUID){
-
4523 getPrimitivePointer_private(p)->setParentObjectID(currentObjectID);
-
4524 }
-
4525
-
4526 objects[currentObjectID] = tile_new;
-
4527 currentObjectID++;
-
4528 return currentObjectID-1;
-
4529
-
4530}
-
-
4531
-
-
4532uint Context::addTileObject(const vec3 &center, const vec2 &size, const SphericalCoord &rotation, const int2 &subdiv, const char* texturefile ){
-
4533
-
4534 if( !validateTextureFileExtenstion(texturefile) ) {
-
4535 helios_runtime_error("ERROR (Context::addTileObject): Texture file " + std::string(texturefile) + " is not PNG or JPEG format.");
-
4536 }else if( !doesTextureFileExist(texturefile) ) {
-
4537 helios_runtime_error("ERROR (Context::addTileObject): Texture file " + std::string(texturefile) + " does not exist.");
-
4538 }else if( size.x==0 || size.y==0 ){
-
4539 helios_runtime_error("ERROR (Context::addTileObject): Size of tile must be greater than 0.");
-
4540 }else if( subdiv.x<1 || subdiv.y<1 ){
-
4541 helios_runtime_error("ERROR (Context::addTileObject): Number of tile subdivisions must be greater than 0.");
-
4542 }
-
4543
-
4544 std::vector<uint> UUID; //\todo Resize here and avoid using push_back() below.
-
4545
-
4546 vec2 subsize;
-
4547 subsize.x = size.x/float(subdiv.x);
-
4548 subsize.y = size.y/float(subdiv.y);
+
4516 return addTileObject(center,size,rotation,subdiv,color);
+
4517}
+
+
4518
+
+
4519uint Context::addTileObject(const vec3 &center, const vec2 &size, const SphericalCoord &rotation, const int2 &subdiv, const RGBcolor &color ){
+
4520
+
4521 if( size.x==0 || size.y==0 ){
+
4522 helios_runtime_error("ERROR (Context::addTileObject): Size of tile must be greater than 0.");
+
4523 }else if( subdiv.x<1 || subdiv.y<1 ){
+
4524 helios_runtime_error("ERROR (Context::addTileObject): Number of tile subdivisions must be greater than 0.");
+
4525 }
+
4526
+
4527 std::vector<uint> UUID; //\todo Resize here and avoid using push_back() below.
+
4528
+
4529 vec2 subsize;
+
4530 subsize.x = size.x/float(subdiv.x);
+
4531 subsize.y = size.y/float(subdiv.y);
+
4532
+
4533 vec3 subcenter;
+
4534
+
4535 for( uint j=0; j<subdiv.y; j++ ){
+
4536 for( uint i=0; i<subdiv.x; i++ ){
+
4537
+
4538 subcenter = make_vec3(-0.5f*size.x+(float(i)+0.5f)*subsize.x,-0.5f*size.y+(float(j)+0.5f)*subsize.y,0.f);
+
4539
+
4540 UUID.push_back( addPatch( subcenter, subsize, make_SphericalCoord(0,0), color ) );
+
4541
+
4542 if( rotation.elevation!=0.f ){
+
4543 getPrimitivePointer_private( UUID.back() )->rotate( -rotation.elevation, "x" );
+
4544 }
+
4545 if( rotation.azimuth!=0.f ){
+
4546 getPrimitivePointer_private( UUID.back() )->rotate( -rotation.azimuth, "z" );
+
4547 }
+
4548 getPrimitivePointer_private( UUID.back() )->translate( center );
4549
-
4550 vec3 subcenter;
-
4551
-
4552 std::vector<helios::vec2> uv;
-
4553 uv.resize(4);
-
4554 vec2 uv_sub;
-
4555 uv_sub.x = 1.f/float(subdiv.x);
-
4556 uv_sub.y = 1.f/float(subdiv.y);
-
4557
-
4558 addTexture( texturefile );
-
4559 const std::vector<std::vector<bool> >* alpha;
-
4560 if( textures.at(texturefile).hasTransparencyChannel() ){
-
4561 alpha = textures.at(texturefile).getTransparencyData();
-
4562 }
-
4563
-
4564 const int2 &sz = textures.at(texturefile).getImageResolution();
-
4565 if( subdiv.x>=sz.x || subdiv.y>=sz.y ){
-
4566 helios_runtime_error("ERROR (Context::addTileObject): The resolution of the texture image '" + std::string(texturefile) + "' is lower than the number of tile subdivisions. Increase resolution of the texture image.");
-
4567 }
-
4568
-
4569 for( uint j=0; j<subdiv.y; j++ ){
-
4570 for( uint i=0; i<subdiv.x; i++ ){
+
4550 }
+
4551 }
+
4552
+
4553 auto* tile_new = (new Tile(currentObjectID, UUID, subdiv, "", this));
+
4554
+
4555 float T[16], S[16], R[16];
+
4556
+
4557 float transform[16];
+
4558 tile_new->getTransformationMatrix( transform );
+
4559
+
4560 makeScaleMatrix(make_vec3(size.x,size.y,1.f),S);
+
4561 matmult(S,transform,transform);
+
4562
+
4563 makeRotationMatrix( -rotation.elevation,"x",R);
+
4564 matmult(R,transform,transform);
+
4565 makeRotationMatrix( -rotation.azimuth,"z",R);
+
4566 matmult(R,transform,transform);
+
4567
+
4568 makeTranslationMatrix(center,T);
+
4569 matmult(T,transform,transform);
+
4570 tile_new->setTransformationMatrix( transform );
4571
-
4572 subcenter = make_vec3(-0.5f*size.x+(float(i)+0.5f)*subsize.x,-0.5f*size.y+(float(j)+0.5f)*subsize.y,0.f);
+
4572 tile_new->setColor( color );
4573
-
4574 uv.at(0) = make_vec2(float(i)*uv_sub.x,float(j)*uv_sub.y);
-
4575 uv.at(1) = make_vec2(float(i+1)*uv_sub.x,float(j)*uv_sub.y);
-
4576 uv.at(2) = make_vec2(float(i+1)*uv_sub.x,float(j+1)*uv_sub.y);
-
4577 uv.at(3) = make_vec2(float(i)*uv_sub.x,float(j+1)*uv_sub.y);
-
4578
-
4579 auto* patch_new = (new Patch( texturefile, uv, textures, 0, currentUUID ));
-
4580
-
4581 if( patch_new->getSolidFraction()==0 ){
-
4582 delete patch_new;
-
4583 continue;
-
4584 }
+
4574 for( uint p : UUID){
+
4575 getPrimitivePointer_private(p)->setParentObjectID(currentObjectID);
+
4576 }
+
4577
+
4578 objects[currentObjectID] = tile_new;
+
4579 currentObjectID++;
+
4580 return currentObjectID-1;
+
4581
+
4582}
+
+
4583
+
+
4584uint Context::addTileObject(const vec3 &center, const vec2 &size, const SphericalCoord &rotation, const int2 &subdiv, const char* texturefile ){
4585
-
4586 assert( size.x>0.f && size.y>0.f );
-
4587 patch_new->scale( make_vec3(subsize.x,subsize.y,1) );
-
4588
-
4589 patch_new->translate( subcenter );
-
4590
-
4591 if( rotation.elevation!=0 ){
-
4592 patch_new->rotate(-rotation.elevation, "x");
-
4593 }
-
4594 if( rotation.azimuth!=0 ){
-
4595 patch_new->rotate(-rotation.azimuth, "z");
-
4596 }
+
4586 if( !validateTextureFileExtenstion(texturefile) ) {
+
4587 helios_runtime_error("ERROR (Context::addTileObject): Texture file " + std::string(texturefile) + " is not PNG or JPEG format.");
+
4588 }else if( !doesTextureFileExist(texturefile) ) {
+
4589 helios_runtime_error("ERROR (Context::addTileObject): Texture file " + std::string(texturefile) + " does not exist.");
+
4590 }else if( size.x==0 || size.y==0 ){
+
4591 helios_runtime_error("ERROR (Context::addTileObject): Size of tile must be greater than 0.");
+
4592 }else if( subdiv.x<1 || subdiv.y<1 ){
+
4593 helios_runtime_error("ERROR (Context::addTileObject): Number of tile subdivisions must be greater than 0.");
+
4594 }
+
4595
+
4596 std::vector<uint> UUID; //\todo Resize here and avoid using push_back() below.
4597
-
4598 patch_new->translate( center );
-
4599
-
4600 primitives[currentUUID] = patch_new;
-
4601 markGeometryDirty();
-
4602 currentUUID++;
-
4603 UUID.push_back(currentUUID-1);
-
4604
-
4605
-
4606 }
-
4607 }
-
4608
-
4609 auto* tile_new = (new Tile(currentObjectID, UUID, subdiv, texturefile, this));
-
4610
-
4611 float T[16], S[16], R[16];
-
4612
-
4613 float transform[16];
-
4614 tile_new->getTransformationMatrix( transform );
+
4598 vec2 subsize;
+
4599 subsize.x = size.x/float(subdiv.x);
+
4600 subsize.y = size.y/float(subdiv.y);
+
4601
+
4602 vec3 subcenter;
+
4603
+
4604 std::vector<helios::vec2> uv;
+
4605 uv.resize(4);
+
4606 vec2 uv_sub;
+
4607 uv_sub.x = 1.f/float(subdiv.x);
+
4608 uv_sub.y = 1.f/float(subdiv.y);
+
4609
+
4610 addTexture( texturefile );
+
4611 const std::vector<std::vector<bool> >* alpha;
+
4612 if( textures.at(texturefile).hasTransparencyChannel() ){
+
4613 alpha = textures.at(texturefile).getTransparencyData();
+
4614 }
4615
-
4616 makeScaleMatrix(make_vec3(size.x,size.y,1.f),S);
-
4617 matmult(S,transform,transform);
-
4618
-
4619 makeRotationMatrix( -rotation.elevation,"x",R);
-
4620 matmult(R,transform,transform);
-
4621 makeRotationMatrix( -rotation.azimuth,"z",R);
-
4622 matmult(R,transform,transform);
+
4616 const int2 &sz = textures.at(texturefile).getImageResolution();
+
4617 if( subdiv.x>=sz.x || subdiv.y>=sz.y ){
+
4618 helios_runtime_error("ERROR (Context::addTileObject): The resolution of the texture image '" + std::string(texturefile) + "' is lower than the number of tile subdivisions. Increase resolution of the texture image.");
+
4619 }
+
4620
+
4621 for( uint j=0; j<subdiv.y; j++ ){
+
4622 for( uint i=0; i<subdiv.x; i++ ){
4623
-
4624 makeTranslationMatrix(center,T);
-
4625 matmult(T,transform,transform);
-
4626 tile_new->setTransformationMatrix( transform );
-
4627
-
4628 for( uint p : UUID){
-
4629 getPrimitivePointer_private(p)->setParentObjectID(currentObjectID);
-
4630 }
-
4631
-
4632 objects[currentObjectID] = tile_new;
-
4633 currentObjectID++;
-
4634 return currentObjectID-1;
-
4635
-
4636}
-
+
4624 subcenter = make_vec3(-0.5f*size.x+(float(i)+0.5f)*subsize.x,-0.5f*size.y+(float(j)+0.5f)*subsize.y,0.f);
+
4625
+
4626 uv.at(0) = make_vec2(float(i)*uv_sub.x,float(j)*uv_sub.y);
+
4627 uv.at(1) = make_vec2(float(i+1)*uv_sub.x,float(j)*uv_sub.y);
+
4628 uv.at(2) = make_vec2(float(i+1)*uv_sub.x,float(j+1)*uv_sub.y);
+
4629 uv.at(3) = make_vec2(float(i)*uv_sub.x,float(j+1)*uv_sub.y);
+
4630
+
4631 auto* patch_new = (new Patch( texturefile, uv, textures, 0, currentUUID ));
+
4632
+
4633 if( patch_new->getSolidFraction()==0 ){
+
4634 delete patch_new;
+
4635 continue;
+
4636 }
4637
-
-
4638uint Context::addTubeObject(uint radial_subdivisions, const std::vector<vec3> &nodes, const std::vector<float> &radius ){
-
4639
-
4640 uint node_count = nodes.size();
-
4641
-
4642 std::vector<RGBcolor> color;
-
4643 color.resize(node_count);
-
4644
-
4645 for( uint i=0; i<node_count; i++ ){
-
4646 color.at(i) = make_RGBcolor(0.f,0.75f,0.f); //Default color is green
-
4647 }
-
4648
-
4649 return addTubeObject(radial_subdivisions, nodes, radius, color);
-
4650
-
4651}
-
-
4652
-
-
4653uint Context::addTubeObject(uint radial_subdivisions, const std::vector<vec3> &nodes, const std::vector<float> &radius, const std::vector<RGBcolor> &color ){
-
4654
-
4655 const uint node_count = nodes.size();
+
4638 assert( size.x>0.f && size.y>0.f );
+
4639 patch_new->scale( make_vec3(subsize.x,subsize.y,1) );
+
4640
+
4641 patch_new->translate( subcenter );
+
4642
+
4643 if( rotation.elevation!=0 ){
+
4644 patch_new->rotate(-rotation.elevation, "x");
+
4645 }
+
4646 if( rotation.azimuth!=0 ){
+
4647 patch_new->rotate(-rotation.azimuth, "z");
+
4648 }
+
4649
+
4650 patch_new->translate( center );
+
4651
+
4652 primitives[currentUUID] = patch_new;
+
4653 markGeometryDirty();
+
4654 currentUUID++;
+
4655 UUID.push_back(currentUUID-1);
4656
-
4657 if( node_count==0 ){
-
4658 helios_runtime_error("ERROR (Context::addTubeObject): Node and radius arrays are empty.");
-
4659 }else if( node_count!=radius.size() ){
-
4660 helios_runtime_error("ERROR (Context::addTubeObject): Size of `nodes' and `radius' arguments must agree.");
-
4661 }else if( node_count!=color.size() ){
-
4662 helios_runtime_error("ERROR (Context::addTubeObject): Size of `nodes' and `color' arguments must agree.");
-
4663 }
+
4657
+
4658 }
+
4659 }
+
4660
+
4661 auto* tile_new = (new Tile(currentObjectID, UUID, subdiv, texturefile, this));
+
4662
+
4663 float T[16], S[16], R[16];
4664
-
4665 vec3 axial_vector, convec;
-
4666 std::vector<float> cfact(radial_subdivisions + 1);
-
4667 std::vector<float> sfact(radial_subdivisions + 1);
-
4668 std::vector<std::vector<vec3> > triangle_vertices;
-
4669 resize_vector( triangle_vertices, radial_subdivisions + 1, node_count );
+
4665 float transform[16];
+
4666 tile_new->getTransformationMatrix( transform );
+
4667
+
4668 makeScaleMatrix(make_vec3(size.x,size.y,1.f),S);
+
4669 matmult(S,transform,transform);
4670
-
4671 for(int j=0; j < radial_subdivisions + 1; j++ ){
-
4672 cfact[j]=cosf(2.f*float(M_PI)*float(j)/float(radial_subdivisions));
-
4673 sfact[j]=sinf(2.f*float(M_PI)*float(j)/float(radial_subdivisions));
-
4674 }
+
4671 makeRotationMatrix( -rotation.elevation,"x",R);
+
4672 matmult(R,transform,transform);
+
4673 makeRotationMatrix( -rotation.azimuth,"z",R);
+
4674 matmult(R,transform,transform);
4675
-
4676 for( int i=0; i<node_count; i++ ){ //looping over tube segments
-
4677
-
4678 vec3 nvec(0.1817f,0.6198f,0.7634f);//random vector to get things going
+
4676 makeTranslationMatrix(center,T);
+
4677 matmult(T,transform,transform);
+
4678 tile_new->setTransformationMatrix( transform );
4679
-
4680 if( radius.at(i)<0 ){
-
4681 helios_runtime_error("ERROR (Context::addTubeObject): Radius of tube must be positive.");
-
4682 }
+
4680 for( uint p : UUID){
+
4681 getPrimitivePointer_private(p)->setParentObjectID(currentObjectID);
+
4682 }
4683
-
4684 if(i==0){
-
4685 axial_vector.x= nodes[i + 1].x - nodes[i].x;
-
4686 axial_vector.y= nodes[i + 1].y - nodes[i].y;
-
4687 axial_vector.z= nodes[i + 1].z - nodes[i].z;
-
4688 }else if(i==node_count-1){
-
4689 axial_vector.x= nodes[i].x - nodes[i - 1].x;
-
4690 axial_vector.y= nodes[i].y - nodes[i - 1].y;
-
4691 axial_vector.z= nodes[i].z - nodes[i - 1].z;
-
4692 }else{
-
4693 axial_vector.x= 0.5f * ((nodes[i].x - nodes[i - 1].x) + (nodes[i + 1].x - nodes[i].x) );
-
4694 axial_vector.y= 0.5f * ((nodes[i].y - nodes[i - 1].y) + (nodes[i + 1].y - nodes[i].y) );
-
4695 axial_vector.z= 0.5f * ((nodes[i].z - nodes[i - 1].z) + (nodes[i + 1].z - nodes[i].z) );
-
4696 }
-
4697
-
4698 convec = cross(nvec, axial_vector);
-
4699 convec.normalize();
-
4700 nvec = cross(axial_vector, convec);
-
4701 nvec.normalize();
+
4684 objects[currentObjectID] = tile_new;
+
4685 currentObjectID++;
+
4686 return currentObjectID-1;
+
4687
+
4688}
+
+
4689
+
+
4690uint Context::addTubeObject(uint radial_subdivisions, const std::vector<vec3> &nodes, const std::vector<float> &radius ){
+
4691
+
4692 uint node_count = nodes.size();
+
4693
+
4694 std::vector<RGBcolor> color;
+
4695 color.resize(node_count);
+
4696
+
4697 for( uint i=0; i<node_count; i++ ){
+
4698 color.at(i) = make_RGBcolor(0.f,0.75f,0.f); //Default color is green
+
4699 }
+
4700
+
4701 return addTubeObject(radial_subdivisions, nodes, radius, color);
4702
-
4703 for(int j=0; j < radial_subdivisions + 1; j++ ){
+
4703}
+
4704
-
4705 vec3 normal = cfact[j]*radius[i]*nvec+sfact[j]*radius[i]*convec;
-
4706 triangle_vertices[i][j]=nodes[i]+normal;
-
4707
-
4708 }
-
4709
-
4710 }
-
4711
-
4712
-
4713 std::vector<uint> UUIDs(2 * (node_count-1) * radial_subdivisions );
-
4714 vec3 v0, v1, v2;
-
4715
-
4716 int ii=0;
-
4717 for(int j=0; j < radial_subdivisions; j++ ) {
-
4718 for (int i = 0; i < node_count - 1; i++) {
-
4719
-
4720 v0 = triangle_vertices[i][j];
-
4721 v1 = triangle_vertices[i + 1][j + 1];
-
4722 v2 = triangle_vertices[i][j + 1];
-
4723
-
4724 UUIDs.at(ii) = addTriangle(v0, v1, v2, color.at(i));
-
4725
-
4726 v0 = triangle_vertices[i][j];
-
4727 v1 = triangle_vertices[i + 1][j];
-
4728 v2 = triangle_vertices[i + 1][j + 1];
-
4729
-
4730 UUIDs.at(ii + 1) = addTriangle(v0, v1, v2, color.at(i));
-
4731
-
4732 ii += 2;
-
4733 }
-
4734 }
-
4735
-
4736 auto* tube_new = (new Tube(currentObjectID, UUIDs, nodes, radius, color, triangle_vertices, radial_subdivisions, "", this));
+
+
4705uint Context::addTubeObject(uint radial_subdivisions, const std::vector<vec3> &nodes, const std::vector<float> &radius, const std::vector<RGBcolor> &color ){
+
4706
+
4707 const uint node_count = nodes.size();
+
4708
+
4709 if( node_count==0 ){
+
4710 helios_runtime_error("ERROR (Context::addTubeObject): Node and radius arrays are empty.");
+
4711 }else if( node_count!=radius.size() ){
+
4712 helios_runtime_error("ERROR (Context::addTubeObject): Size of `nodes' and `radius' arguments must agree.");
+
4713 }else if( node_count!=color.size() ){
+
4714 helios_runtime_error("ERROR (Context::addTubeObject): Size of `nodes' and `color' arguments must agree.");
+
4715 }
+
4716
+
4717 vec3 axial_vector;
+
4718 std::vector<float> cfact(radial_subdivisions + 1);
+
4719 std::vector<float> sfact(radial_subdivisions + 1);
+
4720 std::vector<std::vector<vec3>> triangle_vertices;
+
4721 resize_vector(triangle_vertices, radial_subdivisions + 1, node_count);
+
4722
+
4723 // Initialize trigonometric factors for circle points
+
4724 for (int j = 0; j < radial_subdivisions + 1; j++) {
+
4725 cfact[j] = cosf(2.f * float(M_PI) * float(j) / float(radial_subdivisions));
+
4726 sfact[j] = sinf(2.f * float(M_PI) * float(j) / float(radial_subdivisions));
+
4727 }
+
4728
+
4729 vec3 initial_radial(1.0f, 0.0f, 0.0f);
+
4730 vec3 previous_axial_vector;
+
4731 vec3 previous_radial_dir;
+
4732
+
4733 for (int i = 0; i < node_count; i++) { // Looping over tube segments
+
4734 if (radius.at(i) < 0) {
+
4735 helios_runtime_error("ERROR (Context::addTubeObject): Radius of tube must be positive.");
+
4736 }
4737
-
4738 for( uint p : UUIDs){
-
4739 getPrimitivePointer_private(p)->setParentObjectID(currentObjectID);
-
4740 }
-
4741
-
4742 objects[currentObjectID] = tube_new;
-
4743 currentObjectID++;
-
4744 return currentObjectID-1;
-
4745
-
4746}
-
-
4747
-
-
4748uint Context::addTubeObject(uint radial_subdivisions, const std::vector<vec3> &nodes, const std::vector<float> &radius, const char* texturefile ){
-
4749 size_t node_count = nodes.size();
-
4750 std::vector<float> textureuv_ufrac(node_count);
-
4751 for( int i=0; i<node_count; i++ ){
-
4752 textureuv_ufrac.at(i) = float(i)/float(node_count-1);
-
4753 }
-
4754
-
4755 return addTubeObject( radial_subdivisions, nodes, radius, texturefile, textureuv_ufrac );
-
4756}
-
-
4757
-
-
4758uint Context::addTubeObject(uint radial_subdivisions, const std::vector<vec3> &nodes, const std::vector<float> &radius, const char* texturefile, const std::vector<float> &textureuv_ufrac ){
-
4759
-
4760
-
4761 if( !validateTextureFileExtenstion(texturefile) ){
-
4762 helios_runtime_error("ERROR (Context::addTubeObject): Texture file " + std::string(texturefile) + " is not PNG or JPEG format.");
-
4763 }else if( !doesTextureFileExist(texturefile) ){
-
4764 helios_runtime_error("ERROR (Context::addTubeObject): Texture file " + std::string(texturefile) + " does not exist.");
-
4765 }
-
4766
-
4767 const uint node_count = nodes.size();
-
4768
-
4769 if( node_count==0 ){
-
4770 helios_runtime_error("ERROR (Context::addTubeObject): Node and radius arrays are empty.");
-
4771 }else if( node_count!=radius.size() ){
-
4772 helios_runtime_error("ERROR (Context::addTubeObject): Size of `nodes' and `radius' arguments must agree.");
-
4773 }else if( node_count!=textureuv_ufrac.size() ){
-
4774 helios_runtime_error("ERROR (Context::addTubeObject): Size of `nodes' and `textureuv_ufrac' arguments must agree.");
-
4775 }
-
4776
-
4777 vec3 axial_vector, convec;
-
4778 std::vector<float> cfact(radial_subdivisions + 1);
-
4779 std::vector<float> sfact(radial_subdivisions + 1);
-
4780 std::vector<std::vector<vec3> > triangle_vertices;
-
4781 resize_vector( triangle_vertices, radial_subdivisions + 1, node_count );
-
4782 std::vector<std::vector<vec2> > uv;
-
4783 resize_vector( uv, radial_subdivisions + 1, node_count );
-
4784
-
4785 for(int j=0; j < radial_subdivisions + 1; j++ ){
-
4786 cfact[j]=cosf(2.f*float(M_PI)*float(j)/float(radial_subdivisions));
-
4787 sfact[j]=sinf(2.f*float(M_PI)*float(j)/float(radial_subdivisions));
-
4788 }
-
4789
-
4790 for( int i=0; i<node_count; i++ ){ //looping over tube segments
+
4738 if (i == 0) {
+
4739 axial_vector = nodes[i + 1] - nodes[i];
+
4740 axial_vector.normalize();
+
4741 if (fabs(axial_vector * initial_radial) > 0.99f) {
+
4742 initial_radial = vec3(0.0f, 1.0f, 0.0f); // Avoid parallel vectors
+
4743 }
+
4744 previous_radial_dir = cross(axial_vector, initial_radial).normalize();
+
4745 } else {
+
4746 if (i == node_count - 1) {
+
4747 axial_vector = nodes[i] - nodes[i - 1];
+
4748 } else {
+
4749 axial_vector = 0.5f * ((nodes[i] - nodes[i - 1]) + (nodes[i + 1] - nodes[i]));
+
4750 }
+
4751 axial_vector.normalize();
+
4752
+
4753 // Calculate radial direction using parallel transport
+
4754 vec3 rotation_axis = cross(previous_axial_vector, axial_vector);
+
4755 if (rotation_axis.magnitude() > 1e-6) {
+
4756 float angle = acos(previous_axial_vector * axial_vector);
+
4757 previous_radial_dir = rotatePointAboutLine(previous_radial_dir, vec3(0.0f, 0.0f, 0.0f), rotation_axis, angle);
+
4758 }
+
4759 previous_radial_dir.normalize();
+
4760 }
+
4761
+
4762 previous_axial_vector = axial_vector;
+
4763
+
4764 vec3 radial_dir = previous_radial_dir;
+
4765 vec3 orthogonal_dir = cross(radial_dir, axial_vector);
+
4766 orthogonal_dir.normalize();
+
4767
+
4768 for (int j = 0; j < radial_subdivisions + 1; j++) {
+
4769 vec3 normal = cfact[j] * radius[i] * radial_dir + sfact[j] * radius[i] * orthogonal_dir;
+
4770 triangle_vertices[i][j] = nodes[i] + normal;
+
4771 }
+
4772 }
+
4773
+
4774
+
4775 std::vector<uint> UUIDs(2 * (node_count-1) * radial_subdivisions );
+
4776 vec3 v0, v1, v2;
+
4777
+
4778 int ii=0;
+
4779 for(int j=0; j < radial_subdivisions; j++ ) {
+
4780 for (int i = 0; i < node_count - 1; i++) {
+
4781
+
4782 v0 = triangle_vertices[i][j];
+
4783 v1 = triangle_vertices[i + 1][j + 1];
+
4784 v2 = triangle_vertices[i][j + 1];
+
4785
+
4786 UUIDs.at(ii) = addTriangle(v0, v1, v2, color.at(i));
+
4787
+
4788 v0 = triangle_vertices[i][j];
+
4789 v1 = triangle_vertices[i + 1][j];
+
4790 v2 = triangle_vertices[i + 1][j + 1];
4791
-
4792 vec3 nvec(0.1817f,0.6198f,0.7634f);//random vector to get things going
+
4792 UUIDs.at(ii + 1) = addTriangle(v0, v1, v2, color.at(i));
4793
-
4794 if( radius.at(i)<0 ){
-
4795 helios_runtime_error("ERROR (Context::addTubeObject): Radius of tube must be positive.");
-
4796 }
+
4794 ii += 2;
+
4795 }
+
4796 }
4797
-
4798 if(i==0){
-
4799 axial_vector.x= nodes[i + 1].x - nodes[i].x;
-
4800 axial_vector.y= nodes[i + 1].y - nodes[i].y;
-
4801 axial_vector.z= nodes[i + 1].z - nodes[i].z;
-
4802 }else if(i==node_count-1){
-
4803 axial_vector.x= nodes[i].x - nodes[i - 1].x;
-
4804 axial_vector.y= nodes[i].y - nodes[i - 1].y;
-
4805 axial_vector.z= nodes[i].z - nodes[i - 1].z;
-
4806 }else{
-
4807 axial_vector.x= 0.5f * ((nodes[i].x - nodes[i - 1].x) + (nodes[i + 1].x - nodes[i].x) );
-
4808 axial_vector.y= 0.5f * ((nodes[i].y - nodes[i - 1].y) + (nodes[i + 1].y - nodes[i].y) );
-
4809 axial_vector.z= 0.5f * ((nodes[i].z - nodes[i - 1].z) + (nodes[i + 1].z - nodes[i].z) );
-
4810 }
-
4811
-
4812 float norm;
-
4813 convec = cross(nvec, axial_vector);
-
4814 convec.normalize();
-
4815 nvec = cross(axial_vector, convec);
-
4816 nvec.normalize();
-
4817
-
4818 for(int j=0; j < radial_subdivisions + 1; j++ ){
+
4798 auto* tube_new = (new Tube(currentObjectID, UUIDs, nodes, radius, color, triangle_vertices, radial_subdivisions, "", this));
+
4799
+
4800 for( uint p : UUIDs){
+
4801 getPrimitivePointer_private(p)->setParentObjectID(currentObjectID);
+
4802 }
+
4803
+
4804 objects[currentObjectID] = tube_new;
+
4805 currentObjectID++;
+
4806 return currentObjectID-1;
+
4807
+
4808}
+
+
4809
+
+
4810uint Context::addTubeObject(uint radial_subdivisions, const std::vector<vec3> &nodes, const std::vector<float> &radius, const char* texturefile ){
+
4811 size_t node_count = nodes.size();
+
4812 std::vector<float> textureuv_ufrac(node_count);
+
4813 for( int i=0; i<node_count; i++ ){
+
4814 textureuv_ufrac.at(i) = float(i)/float(node_count-1);
+
4815 }
+
4816
+
4817 return addTubeObject( radial_subdivisions, nodes, radius, texturefile, textureuv_ufrac );
+
4818}
+
4819
-
4820 vec3 normal = cfact[j]*radius[i]*nvec+sfact[j]*radius[i]*convec;
-
4821 triangle_vertices[i][j]=nodes[i]+normal;
-
4822
-
4823 uv[i][j].x = textureuv_ufrac[i];
-
4824 uv[i][j].y = float(j)/float(radial_subdivisions);
-
4825
-
4826 }
-
4827
-
4828 }
-
4829
-
4830 std::vector<uint> UUIDs(2 * (node_count-1) * radial_subdivisions );
-
4831 vec3 v0, v1, v2;
-
4832 vec2 uv0, uv1, uv2;
-
4833
-
4834 int ii=0;
-
4835 for(int j=0; j < radial_subdivisions; j++ ) {
-
4836 for (int i = 0; i < node_count - 1; i++) {
-
4837
-
4838 v0 = triangle_vertices[i][j];
-
4839 v1 = triangle_vertices[i + 1][j + 1];
-
4840 v2 = triangle_vertices[i][j + 1];
-
4841
-
4842 uv0 = uv[i][j];
-
4843 uv1 = uv[i+1][j+1];
-
4844 uv2 = uv[i][j+1];
-
4845
-
4846 UUIDs.at(ii) = addTriangle(v0, v1, v2, texturefile, uv0, uv1, uv2);
-
4847
-
4848 v0 = triangle_vertices[i][j];
-
4849 v1 = triangle_vertices[i + 1][j];
-
4850 v2 = triangle_vertices[i + 1][j + 1];
-
4851
-
4852 uv0 = uv[i][j];
-
4853 uv1 = uv[i+1][j];
-
4854 uv2 = uv[i+1][j+1];
-
4855
-
4856 UUIDs.at(ii + 1) = addTriangle(v0, v1, v2, texturefile, uv0, uv1, uv2);
-
4857
-
4858 ii += 2;
-
4859 }
-
4860 }
-
4861
-
4862 std::vector<RGBcolor> colors(nodes.size());
-
4863
-
4864 auto* tube_new = (new Tube(currentObjectID, UUIDs, nodes, radius, colors, triangle_vertices, radial_subdivisions, texturefile, this));
-
4865
-
4866 for( uint p : UUIDs){
-
4867 getPrimitivePointer_private(p)->setParentObjectID(currentObjectID);
-
4868 }
-
4869
-
4870 objects[currentObjectID] = tube_new;
-
4871 currentObjectID++;
-
4872
-
4873 return currentObjectID-1;
+
+
4820uint Context::addTubeObject(uint radial_subdivisions, const std::vector<vec3> &nodes, const std::vector<float> &radius, const char* texturefile, const std::vector<float> &textureuv_ufrac) {
+
4821 if (!validateTextureFileExtenstion(texturefile)) {
+
4822 helios_runtime_error("ERROR (Context::addTubeObject): Texture file " + std::string(texturefile) + " is not PNG or JPEG format.");
+
4823 } else if (!doesTextureFileExist(texturefile)) {
+
4824 helios_runtime_error("ERROR (Context::addTubeObject): Texture file " + std::string(texturefile) + " does not exist.");
+
4825 }
+
4826
+
4827 const uint node_count = nodes.size();
+
4828
+
4829 if (node_count == 0) {
+
4830 helios_runtime_error("ERROR (Context::addTubeObject): Node and radius arrays are empty.");
+
4831 } else if (node_count != radius.size()) {
+
4832 helios_runtime_error("ERROR (Context::addTubeObject): Size of `nodes' and `radius' arguments must agree.");
+
4833 } else if (node_count != textureuv_ufrac.size()) {
+
4834 helios_runtime_error("ERROR (Context::addTubeObject): Size of `nodes' and `textureuv_ufrac' arguments must agree.");
+
4835 }
+
4836
+
4837 vec3 axial_vector;
+
4838 std::vector<float> cfact(radial_subdivisions + 1);
+
4839 std::vector<float> sfact(radial_subdivisions + 1);
+
4840 std::vector<std::vector<vec3>> triangle_vertices;
+
4841 resize_vector(triangle_vertices, radial_subdivisions + 1, node_count);
+
4842 std::vector<std::vector<vec2>> uv;
+
4843 resize_vector(uv, radial_subdivisions + 1, node_count);
+
4844
+
4845 // Initialize trigonometric factors for circle points
+
4846 for (int j = 0; j < radial_subdivisions + 1; j++) {
+
4847 cfact[j] = cosf(2.f * float(M_PI) * float(j) / float(radial_subdivisions));
+
4848 sfact[j] = sinf(2.f * float(M_PI) * float(j) / float(radial_subdivisions));
+
4849 }
+
4850
+
4851 vec3 initial_radial(1.0f, 0.0f, 0.0f);
+
4852 vec3 previous_axial_vector;
+
4853 vec3 previous_radial_dir;
+
4854
+
4855 for (int i = 0; i < node_count; i++) { // Looping over tube segments
+
4856 if (radius.at(i) < 0) {
+
4857 helios_runtime_error("ERROR (Context::addTubeObject): Radius of tube must be positive.");
+
4858 }
+
4859
+
4860 if (i == 0) {
+
4861 axial_vector = nodes[i + 1] - nodes[i];
+
4862 axial_vector.normalize();
+
4863 if (fabs(axial_vector * initial_radial) > 0.99f) {
+
4864 initial_radial = vec3(0.0f, 1.0f, 0.0f); // Avoid parallel vectors
+
4865 }
+
4866 previous_radial_dir = cross(axial_vector, initial_radial).normalize();
+
4867 } else {
+
4868 if (i == node_count - 1) {
+
4869 axial_vector = nodes[i] - nodes[i - 1];
+
4870 } else {
+
4871 axial_vector = 0.5f * ((nodes[i] - nodes[i - 1]) + (nodes[i + 1] - nodes[i]));
+
4872 }
+
4873 axial_vector.normalize();
4874
-
4875}
-
-
4876
-
-
4877uint Context::addBoxObject(const vec3 &center, const vec3 &size, const int3 &subdiv ){
-
4878
-
4879 RGBcolor color = make_RGBcolor(0.f,0.75f,0.f); //Default color is green
-
4880
-
4881 return addBoxObject(center,size,subdiv,color,false);
-
4882}
-
+
4875 // Calculate radial direction using parallel transport
+
4876 vec3 rotation_axis = cross(previous_axial_vector, axial_vector);
+
4877 if (rotation_axis.magnitude() > 1e-6) {
+
4878 float angle = acos(previous_axial_vector * axial_vector);
+
4879 previous_radial_dir = rotatePointAboutLine(previous_radial_dir, vec3(0.0f, 0.0f, 0.0f), rotation_axis, angle);
+
4880 }
+
4881 previous_radial_dir.normalize();
+
4882 }
4883
-
-
4884uint Context::addBoxObject(const vec3 &center, const vec3 &size, const int3 &subdiv, const RGBcolor &color ){
-
4885 return addBoxObject(center,size,subdiv,color,false);
-
4886}
-
-
4887
-
-
4888uint Context::addBoxObject(const vec3 &center, const vec3 &size, const int3 &subdiv, const char* texturefile ){
-
4889 return addBoxObject(center,size,subdiv,texturefile,false);
-
4890}
-
-
4891
-
-
4892uint Context::addBoxObject(const vec3 &center, const vec3 &size, const int3 &subdiv, const RGBcolor &color, bool reverse_normals ){
+
4884 previous_axial_vector = axial_vector;
+
4885
+
4886 vec3 radial_dir = previous_radial_dir;
+
4887 vec3 orthogonal_dir = cross(radial_dir, axial_vector);
+
4888 orthogonal_dir.normalize();
+
4889
+
4890 for (int j = 0; j < radial_subdivisions + 1; j++) {
+
4891 vec3 normal = cfact[j] * radius[i] * radial_dir + sfact[j] * radius[i] * orthogonal_dir;
+
4892 triangle_vertices[i][j] = nodes[i] + normal;
4893
-
4894 if( size.x<=0 || size.y<=0 || size.z<=0 ){
-
4895 helios_runtime_error("ERROR (Context::addBoxObject): Size of box must be positive.");
-
4896 }else if( subdiv.x<1 || subdiv.y<1 || subdiv.z<1 ){
-
4897 helios_runtime_error("ERROR (Context::addBoxObject): Number of box subdivisions must be positive.");
-
4898 }
-
4899
-
4900 std::vector<uint> UUID; //\todo Resize here and avoid using push_back() below.
-
4901
-
4902 vec3 subsize;
-
4903 subsize.x = size.x/float(subdiv.x);
-
4904 subsize.y = size.y/float(subdiv.y);
-
4905 subsize.z = size.z/float(subdiv.z);
-
4906
-
4907 vec3 subcenter;
-
4908 uint objID;
-
4909 std::vector<uint> U, U_copy;
-
4910
-
4911 if( reverse_normals ){ //normals point inward
-
4912
-
4913 // x-z faces (vertical)
-
4914
-
4915 //right
-
4916 subcenter = center + make_vec3(0,0.5f*size.y,0);
-
4917 U = addTile( subcenter, make_vec2(size.x,size.z), make_SphericalCoord(0.5f*M_PI,M_PI), make_int2(subdiv.x,subdiv.z), color );
-
4918 UUID.insert( UUID.end(), U.begin(), U.end() );
+
4894 uv[i][j].x = textureuv_ufrac[i];
+
4895 uv[i][j].y = float(j) / float(radial_subdivisions);
+
4896 }
+
4897 }
+
4898
+
4899 std::vector<uint> UUIDs(2 * (node_count - 1) * radial_subdivisions);
+
4900 vec3 v0, v1, v2;
+
4901 vec2 uv0, uv1, uv2;
+
4902
+
4903 int ii = 0;
+
4904 for (int j = 0; j < radial_subdivisions; j++) {
+
4905 for (int i = 0; i < node_count - 1; i++) {
+
4906 v0 = triangle_vertices[i][j];
+
4907 v1 = triangle_vertices[i + 1][j + 1];
+
4908 v2 = triangle_vertices[i][j + 1];
+
4909
+
4910 uv0 = uv[i][j];
+
4911 uv1 = uv[i + 1][j + 1];
+
4912 uv2 = uv[i][j + 1];
+
4913
+
4914 UUIDs.at(ii) = addTriangle(v0, v1, v2, texturefile, uv0, uv1, uv2);
+
4915
+
4916 v0 = triangle_vertices[i][j];
+
4917 v1 = triangle_vertices[i + 1][j];
+
4918 v2 = triangle_vertices[i + 1][j + 1];
4919
-
4920 //left
-
4921 subcenter = center - make_vec3(0,0.5f*size.y,0);
-
4922 U = addTile( subcenter, make_vec2(size.x,size.z), make_SphericalCoord(0.5f*M_PI,0), make_int2(subdiv.x,subdiv.z), color );
-
4923 UUID.insert( UUID.end(), U.begin(), U.end() );
-
4924
-
4925 // y-z faces (vertical)
-
4926
-
4927 //front
-
4928 subcenter = center + make_vec3(0.5f*size.x,0,0);
-
4929 U = addTile( subcenter, make_vec2(size.y,size.z), make_SphericalCoord(0.5f*M_PI,1.5f*M_PI), make_int2(subdiv.y,subdiv.z), color );
-
4930 UUID.insert( UUID.end(), U.begin(), U.end() );
+
4920 uv0 = uv[i][j];
+
4921 uv1 = uv[i + 1][j];
+
4922 uv2 = uv[i + 1][j + 1];
+
4923
+
4924 UUIDs.at(ii + 1) = addTriangle(v0, v1, v2, texturefile, uv0, uv1, uv2);
+
4925
+
4926 ii += 2;
+
4927 }
+
4928 }
+
4929
+
4930 std::vector<RGBcolor> colors(nodes.size());
4931
-
4932 //back
-
4933 subcenter = center - make_vec3(0.5f*size.x,0,0);
-
4934 U = addTile( subcenter, make_vec2(size.y,size.z), make_SphericalCoord(0.5f*M_PI,0.5f*M_PI), make_int2(subdiv.y,subdiv.z), color );
-
4935 UUID.insert( UUID.end(), U.begin(), U.end() );
-
4936
-
4937 // x-y faces (horizontal)
-
4938
-
4939 //top
-
4940 subcenter = center + make_vec3(0,0,0.5f*size.z);
-
4941 U = addTile( subcenter, make_vec2(size.x,size.y), make_SphericalCoord(M_PI,0), make_int2(subdiv.x,subdiv.y), color );
-
4942 UUID.insert( UUID.end(), U.begin(), U.end() );
+
4932 auto* tube_new = (new Tube(currentObjectID, UUIDs, nodes, radius, colors, triangle_vertices, radial_subdivisions, texturefile, this));
+
4933
+
4934 for (uint p : UUIDs) {
+
4935 getPrimitivePointer_private(p)->setParentObjectID(currentObjectID);
+
4936 }
+
4937
+
4938 objects[currentObjectID] = tube_new;
+
4939 currentObjectID++;
+
4940
+
4941 return currentObjectID - 1;
+
4942}
+
4943
-
4944 //bottom
-
4945 subcenter = center - make_vec3(0,0,0.5f*size.z);
-
4946 U = addTile( subcenter, make_vec2(size.x,size.y), make_SphericalCoord(0,0), make_int2(subdiv.x,subdiv.y), color );
-
4947 UUID.insert( UUID.end(), U.begin(), U.end() );
-
4948
-
4949 }else{ //normals point outward
+
+
4944uint Context::addBoxObject(const vec3 &center, const vec3 &size, const int3 &subdiv ){
+
4945
+
4946 RGBcolor color = make_RGBcolor(0.f,0.75f,0.f); //Default color is green
+
4947
+
4948 return addBoxObject(center,size,subdiv,color,false);
+
4949}
+
4950
-
4951 // x-z faces (vertical)
-
4952
-
4953 //right
-
4954 subcenter = center + make_vec3(0,0.5f*size.y,0);
-
4955 U = addTile( subcenter, make_vec2(size.x,size.z), make_SphericalCoord(0.5f*M_PI,0), make_int2(subdiv.x,subdiv.z), color );
-
4956 UUID.insert( UUID.end(), U.begin(), U.end() );
-
4957
-
4958 //left
-
4959 subcenter = center - make_vec3(0,0.5f*size.y,0);
-
4960 U = addTile( subcenter, make_vec2(size.x,size.z), make_SphericalCoord(0.5f*M_PI,M_PI), make_int2(subdiv.x,subdiv.z), color );
-
4961 UUID.insert( UUID.end(), U.begin(), U.end() );
-
4962
-
4963 // y-z faces (vertical)
-
4964
-
4965 //front
-
4966 subcenter = center + make_vec3(0.5f*size.x,0,0);
-
4967 U = addTile( subcenter, make_vec2(size.y,size.z), make_SphericalCoord(0.5f*M_PI,0.5f*M_PI), make_int2(subdiv.y,subdiv.z), color );
-
4968 UUID.insert( UUID.end(), U.begin(), U.end() );
-
4969
-
4970 //back
-
4971 subcenter = center - make_vec3(0.5f*size.x,0,0);
-
4972 U = addTile( subcenter, make_vec2(size.y,size.z), make_SphericalCoord(0.5f*M_PI,1.5f*M_PI), make_int2(subdiv.y,subdiv.z), color );
-
4973 UUID.insert( UUID.end(), U.begin(), U.end() );
-
4974
-
4975 // x-y faces (horizontal)
-
4976
-
4977 //top
-
4978 subcenter = center + make_vec3(0,0,0.5f*size.z);
-
4979 U = addTile( subcenter, make_vec2(size.x,size.y), make_SphericalCoord(0,0), make_int2(subdiv.x,subdiv.y), color );
-
4980 UUID.insert( UUID.end(), U.begin(), U.end() );
+
+
4951uint Context::addBoxObject(const vec3 &center, const vec3 &size, const int3 &subdiv, const RGBcolor &color ){
+
4952 return addBoxObject(center,size,subdiv,color,false);
+
4953}
+
+
4954
+
+
4955uint Context::addBoxObject(const vec3 &center, const vec3 &size, const int3 &subdiv, const char* texturefile ){
+
4956 return addBoxObject(center,size,subdiv,texturefile,false);
+
4957}
+
+
4958
+
+
4959uint Context::addBoxObject(const vec3 &center, const vec3 &size, const int3 &subdiv, const RGBcolor &color, bool reverse_normals ){
+
4960
+
4961 if( size.x<=0 || size.y<=0 || size.z<=0 ){
+
4962 helios_runtime_error("ERROR (Context::addBoxObject): Size of box must be positive.");
+
4963 }else if( subdiv.x<1 || subdiv.y<1 || subdiv.z<1 ){
+
4964 helios_runtime_error("ERROR (Context::addBoxObject): Number of box subdivisions must be positive.");
+
4965 }
+
4966
+
4967 std::vector<uint> UUID; //\todo Resize here and avoid using push_back() below.
+
4968
+
4969 vec3 subsize;
+
4970 subsize.x = size.x/float(subdiv.x);
+
4971 subsize.y = size.y/float(subdiv.y);
+
4972 subsize.z = size.z/float(subdiv.z);
+
4973
+
4974 vec3 subcenter;
+
4975 uint objID;
+
4976 std::vector<uint> U, U_copy;
+
4977
+
4978 if( reverse_normals ){ //normals point inward
+
4979
+
4980 // x-z faces (vertical)
4981
-
4982 //bottom
-
4983 subcenter = center - make_vec3(0,0,0.5f*size.z);
-
4984 U = addTile( subcenter, make_vec2(size.x,size.y), make_SphericalCoord(M_PI,0), make_int2(subdiv.x,subdiv.y), color );
+
4982 //right
+
4983 subcenter = center + make_vec3(0,0.5f*size.y,0);
+
4984 U = addTile( subcenter, make_vec2(size.x,size.z), make_SphericalCoord(0.5f*M_PI,M_PI), make_int2(subdiv.x,subdiv.z), color );
4985 UUID.insert( UUID.end(), U.begin(), U.end() );
4986
-
4987 }
-
4988
-
4989 auto* box_new = (new Box(currentObjectID, UUID, subdiv, "", this));
-
4990
-
4991 float T[16], transform[16];
-
4992 box_new->getTransformationMatrix( transform );
+
4987 //left
+
4988 subcenter = center - make_vec3(0,0.5f*size.y,0);
+
4989 U = addTile( subcenter, make_vec2(size.x,size.z), make_SphericalCoord(0.5f*M_PI,0), make_int2(subdiv.x,subdiv.z), color );
+
4990 UUID.insert( UUID.end(), U.begin(), U.end() );
+
4991
+
4992 // y-z faces (vertical)
4993
-
4994 makeScaleMatrix(size,T);
-
4995 matmult(T,transform,transform);
-
4996
-
4997 makeTranslationMatrix(center,T);
-
4998 matmult(T,transform,transform);
-
4999 box_new->setTransformationMatrix( transform );
-
5000
-
5001 box_new->setColor( color );
-
5002
-
5003 for( uint p : UUID){
-
5004 getPrimitivePointer_private(p)->setParentObjectID(currentObjectID);
-
5005 }
-
5006
-
5007 objects[currentObjectID] = box_new;
-
5008 currentObjectID++;
-
5009 return currentObjectID-1;
+
4994 //front
+
4995 subcenter = center + make_vec3(0.5f*size.x,0,0);
+
4996 U = addTile( subcenter, make_vec2(size.y,size.z), make_SphericalCoord(0.5f*M_PI,1.5f*M_PI), make_int2(subdiv.y,subdiv.z), color );
+
4997 UUID.insert( UUID.end(), U.begin(), U.end() );
+
4998
+
4999 //back
+
5000 subcenter = center - make_vec3(0.5f*size.x,0,0);
+
5001 U = addTile( subcenter, make_vec2(size.y,size.z), make_SphericalCoord(0.5f*M_PI,0.5f*M_PI), make_int2(subdiv.y,subdiv.z), color );
+
5002 UUID.insert( UUID.end(), U.begin(), U.end() );
+
5003
+
5004 // x-y faces (horizontal)
+
5005
+
5006 //top
+
5007 subcenter = center + make_vec3(0,0,0.5f*size.z);
+
5008 U = addTile( subcenter, make_vec2(size.x,size.y), make_SphericalCoord(M_PI,0), make_int2(subdiv.x,subdiv.y), color );
+
5009 UUID.insert( UUID.end(), U.begin(), U.end() );
5010
-
5011}
-
-
5012
-
-
5013uint Context::addBoxObject(vec3 center, const vec3 &size, const int3 &subdiv, const char* texturefile, bool reverse_normals ){
-
5014
-
5015 if( !validateTextureFileExtenstion(texturefile) ){
-
5016 helios_runtime_error("ERROR (Context::addBoxObject): Texture file " + std::string(texturefile) + " is not PNG or JPEG format.");
-
5017 }else if( !doesTextureFileExist(texturefile) ){
-
5018 helios_runtime_error("ERROR (Context::addBoxObject): Texture file " + std::string(texturefile) + " does not exist.");
-
5019 }
-
5020
-
5021 std::vector<uint> UUID;
-
5022
-
5023 vec3 subsize;
-
5024 subsize.x = size.x/float(subdiv.x);
-
5025 subsize.y = size.y/float(subdiv.y);
-
5026 subsize.z = size.z/float(subdiv.z);
-
5027
-
5028 vec3 subcenter;
-
5029 uint objID;
-
5030 std::vector<uint> U, U_copy;
+
5011 //bottom
+
5012 subcenter = center - make_vec3(0,0,0.5f*size.z);
+
5013 U = addTile( subcenter, make_vec2(size.x,size.y), make_SphericalCoord(0,0), make_int2(subdiv.x,subdiv.y), color );
+
5014 UUID.insert( UUID.end(), U.begin(), U.end() );
+
5015
+
5016 }else{ //normals point outward
+
5017
+
5018 // x-z faces (vertical)
+
5019
+
5020 //right
+
5021 subcenter = center + make_vec3(0,0.5f*size.y,0);
+
5022 U = addTile( subcenter, make_vec2(size.x,size.z), make_SphericalCoord(0.5f*M_PI,0), make_int2(subdiv.x,subdiv.z), color );
+
5023 UUID.insert( UUID.end(), U.begin(), U.end() );
+
5024
+
5025 //left
+
5026 subcenter = center - make_vec3(0,0.5f*size.y,0);
+
5027 U = addTile( subcenter, make_vec2(size.x,size.z), make_SphericalCoord(0.5f*M_PI,M_PI), make_int2(subdiv.x,subdiv.z), color );
+
5028 UUID.insert( UUID.end(), U.begin(), U.end() );
+
5029
+
5030 // y-z faces (vertical)
5031
-
5032 if( reverse_normals ){ //normals point inward
-
5033
-
5034 // x-z faces (vertical)
-
5035
-
5036 //right
-
5037 subcenter = center + make_vec3(0,0.5f*size.y,0);
-
5038 U = addTile( subcenter, make_vec2(size.x,size.z), make_SphericalCoord(0.5*M_PI,M_PI), make_int2(subdiv.x,subdiv.z), texturefile );
-
5039 UUID.insert( UUID.end(), U.begin(), U.end() );
-
5040
-
5041 //left
-
5042 subcenter = center - make_vec3(0,0.5f*size.y,0);
-
5043 U = addTile( subcenter, make_vec2(size.x,size.z), make_SphericalCoord(0.5*M_PI,0), make_int2(subdiv.x,subdiv.z), texturefile );
-
5044 UUID.insert( UUID.end(), U.begin(), U.end() );
-
5045
-
5046 // y-z faces (vertical)
-
5047
-
5048 //front
-
5049 subcenter = center + make_vec3(0.5f*size.x,0,0);
-
5050 U = addTile( subcenter, make_vec2(size.y,size.z), make_SphericalCoord(0.5*M_PI,1.5*M_PI), make_int2(subdiv.y,subdiv.z), texturefile );
-
5051 UUID.insert( UUID.end(), U.begin(), U.end() );
-
5052
-
5053 //back
-
5054 subcenter = center - make_vec3(0.5f*size.x,0,0);
-
5055 U = addTile( subcenter, make_vec2(size.y,size.z), make_SphericalCoord(0.5*M_PI,0.5*M_PI), make_int2(subdiv.y,subdiv.z), texturefile );
-
5056 UUID.insert( UUID.end(), U.begin(), U.end() );
+
5032 //front
+
5033 subcenter = center + make_vec3(0.5f*size.x,0,0);
+
5034 U = addTile( subcenter, make_vec2(size.y,size.z), make_SphericalCoord(0.5f*M_PI,0.5f*M_PI), make_int2(subdiv.y,subdiv.z), color );
+
5035 UUID.insert( UUID.end(), U.begin(), U.end() );
+
5036
+
5037 //back
+
5038 subcenter = center - make_vec3(0.5f*size.x,0,0);
+
5039 U = addTile( subcenter, make_vec2(size.y,size.z), make_SphericalCoord(0.5f*M_PI,1.5f*M_PI), make_int2(subdiv.y,subdiv.z), color );
+
5040 UUID.insert( UUID.end(), U.begin(), U.end() );
+
5041
+
5042 // x-y faces (horizontal)
+
5043
+
5044 //top
+
5045 subcenter = center + make_vec3(0,0,0.5f*size.z);
+
5046 U = addTile( subcenter, make_vec2(size.x,size.y), make_SphericalCoord(0,0), make_int2(subdiv.x,subdiv.y), color );
+
5047 UUID.insert( UUID.end(), U.begin(), U.end() );
+
5048
+
5049 //bottom
+
5050 subcenter = center - make_vec3(0,0,0.5f*size.z);
+
5051 U = addTile( subcenter, make_vec2(size.x,size.y), make_SphericalCoord(M_PI,0), make_int2(subdiv.x,subdiv.y), color );
+
5052 UUID.insert( UUID.end(), U.begin(), U.end() );
+
5053
+
5054 }
+
5055
+
5056 auto* box_new = (new Box(currentObjectID, UUID, subdiv, "", this));
5057
-
5058 // x-y faces (horizontal)
-
5059
-
5060 //top
-
5061 subcenter = center + make_vec3(0,0,0.5f*size.z);
-
5062 U = addTile( subcenter, make_vec2(size.x,size.y), make_SphericalCoord(M_PI,0), make_int2(subdiv.x,subdiv.y), texturefile );
-
5063 UUID.insert( UUID.end(), U.begin(), U.end() );
-
5064
-
5065 //bottom
-
5066 subcenter = center - make_vec3(0,0,0.5f*size.z);
-
5067 U = addTile( subcenter, make_vec2(size.x,size.y), make_SphericalCoord(0,0), make_int2(subdiv.x,subdiv.y), texturefile );
-
5068 UUID.insert( UUID.end(), U.begin(), U.end() );
+
5058 float T[16], transform[16];
+
5059 box_new->getTransformationMatrix( transform );
+
5060
+
5061 makeScaleMatrix(size,T);
+
5062 matmult(T,transform,transform);
+
5063
+
5064 makeTranslationMatrix(center,T);
+
5065 matmult(T,transform,transform);
+
5066 box_new->setTransformationMatrix( transform );
+
5067
+
5068 box_new->setColor( color );
5069
-
5070 }else{ //normals point outward
-
5071
-
5072 // x-z faces (vertical)
+
5070 for( uint p : UUID){
+
5071 getPrimitivePointer_private(p)->setParentObjectID(currentObjectID);
+
5072 }
5073
-
5074 //right
-
5075 subcenter = center + make_vec3(0,0.5f*size.y,0);
-
5076 U = addTile( subcenter, make_vec2(size.x,size.z), make_SphericalCoord(0.5*M_PI,0), make_int2(subdiv.x,subdiv.z), texturefile );
-
5077 UUID.insert( UUID.end(), U.begin(), U.end() );
-
5078
-
5079 //left
-
5080 subcenter = center - make_vec3(0,0.5f*size.y,0);
-
5081 U = addTile( subcenter, make_vec2(size.x,size.z), make_SphericalCoord(0.5*M_PI,M_PI), make_int2(subdiv.x,subdiv.z), texturefile );
-
5082 UUID.insert( UUID.end(), U.begin(), U.end() );
-
5083
-
5084 // y-z faces (vertical)
-
5085
-
5086 //front
-
5087 subcenter = center + make_vec3(0.5f*size.x,0,0);
-
5088 U = addTile( subcenter, make_vec2(size.y,size.z), make_SphericalCoord(0.5*M_PI,0.5*M_PI), make_int2(subdiv.y,subdiv.z), texturefile );
-
5089 UUID.insert( UUID.end(), U.begin(), U.end() );
-
5090
-
5091 //back
-
5092 subcenter = center - make_vec3(0.5f*size.x,0,0);
-
5093 U = addTile( subcenter, make_vec2(size.y,size.z), make_SphericalCoord(0.5*M_PI,1.5*M_PI), make_int2(subdiv.y,subdiv.z), texturefile );
-
5094 UUID.insert( UUID.end(), U.begin(), U.end() );
-
5095
-
5096 // x-y faces (horizontal)
-
5097
-
5098 //top
-
5099 subcenter = center + make_vec3(0,0,0.5f*size.z);
-
5100 U = addTile( subcenter, make_vec2(size.x,size.y), make_SphericalCoord(0,0), make_int2(subdiv.x,subdiv.y), texturefile );
-
5101 UUID.insert( UUID.end(), U.begin(), U.end() );
+
5074 objects[currentObjectID] = box_new;
+
5075 currentObjectID++;
+
5076 return currentObjectID-1;
+
5077
+
5078}
+
+
5079
+
+
5080uint Context::addBoxObject(vec3 center, const vec3 &size, const int3 &subdiv, const char* texturefile, bool reverse_normals ){
+
5081
+
5082 if( !validateTextureFileExtenstion(texturefile) ){
+
5083 helios_runtime_error("ERROR (Context::addBoxObject): Texture file " + std::string(texturefile) + " is not PNG or JPEG format.");
+
5084 }else if( !doesTextureFileExist(texturefile) ){
+
5085 helios_runtime_error("ERROR (Context::addBoxObject): Texture file " + std::string(texturefile) + " does not exist.");
+
5086 }
+
5087
+
5088 std::vector<uint> UUID;
+
5089
+
5090 vec3 subsize;
+
5091 subsize.x = size.x/float(subdiv.x);
+
5092 subsize.y = size.y/float(subdiv.y);
+
5093 subsize.z = size.z/float(subdiv.z);
+
5094
+
5095 vec3 subcenter;
+
5096 uint objID;
+
5097 std::vector<uint> U, U_copy;
+
5098
+
5099 if( reverse_normals ){ //normals point inward
+
5100
+
5101 // x-z faces (vertical)
5102
-
5103 //bottom
-
5104 subcenter = center - make_vec3(0,0,0.5f*size.z);
-
5105 U = addTile( subcenter, make_vec2(size.x,size.y), make_SphericalCoord(M_PI,0), make_int2(subdiv.x,subdiv.y), texturefile );
+
5103 //right
+
5104 subcenter = center + make_vec3(0,0.5f*size.y,0);
+
5105 U = addTile( subcenter, make_vec2(size.x,size.z), make_SphericalCoord(0.5*M_PI,M_PI), make_int2(subdiv.x,subdiv.z), texturefile );
5106 UUID.insert( UUID.end(), U.begin(), U.end() );
5107
-
5108 }
-
5109
-
5110 auto* box_new = (new Box(currentObjectID, UUID, subdiv, texturefile, this));
-
5111
-
5112 float T[16], transform[16];
-
5113 box_new->getTransformationMatrix( transform );
+
5108 //left
+
5109 subcenter = center - make_vec3(0,0.5f*size.y,0);
+
5110 U = addTile( subcenter, make_vec2(size.x,size.z), make_SphericalCoord(0.5*M_PI,0), make_int2(subdiv.x,subdiv.z), texturefile );
+
5111 UUID.insert( UUID.end(), U.begin(), U.end() );
+
5112
+
5113 // y-z faces (vertical)
5114
-
5115 makeScaleMatrix(size,T);
-
5116 matmult(T,transform,transform);
-
5117
-
5118 makeTranslationMatrix(center,T);
-
5119 matmult(T,transform,transform);
-
5120 box_new->setTransformationMatrix( transform );
-
5121
-
5122 for( uint p : UUID){
-
5123 getPrimitivePointer_private(p)->setParentObjectID(currentObjectID);
-
5124 }
-
5125
-
5126 objects[currentObjectID] = box_new;
-
5127 currentObjectID++;
-
5128 return currentObjectID-1;
-
5129
-
5130
-
5131}
-
-
5132
-
-
5133uint Context::addDiskObject(uint Ndivs, const vec3 &center, const vec2 &size ){
-
5134 return addDiskObject(make_int2(Ndivs,1),center,size,make_SphericalCoord(0,0),make_RGBAcolor(1,0,0,1));
-
5135}
-
+
5115 //front
+
5116 subcenter = center + make_vec3(0.5f*size.x,0,0);
+
5117 U = addTile( subcenter, make_vec2(size.y,size.z), make_SphericalCoord(0.5*M_PI,1.5*M_PI), make_int2(subdiv.y,subdiv.z), texturefile );
+
5118 UUID.insert( UUID.end(), U.begin(), U.end() );
+
5119
+
5120 //back
+
5121 subcenter = center - make_vec3(0.5f*size.x,0,0);
+
5122 U = addTile( subcenter, make_vec2(size.y,size.z), make_SphericalCoord(0.5*M_PI,0.5*M_PI), make_int2(subdiv.y,subdiv.z), texturefile );
+
5123 UUID.insert( UUID.end(), U.begin(), U.end() );
+
5124
+
5125 // x-y faces (horizontal)
+
5126
+
5127 //top
+
5128 subcenter = center + make_vec3(0,0,0.5f*size.z);
+
5129 U = addTile( subcenter, make_vec2(size.x,size.y), make_SphericalCoord(M_PI,0), make_int2(subdiv.x,subdiv.y), texturefile );
+
5130 UUID.insert( UUID.end(), U.begin(), U.end() );
+
5131
+
5132 //bottom
+
5133 subcenter = center - make_vec3(0,0,0.5f*size.z);
+
5134 U = addTile( subcenter, make_vec2(size.x,size.y), make_SphericalCoord(0,0), make_int2(subdiv.x,subdiv.y), texturefile );
+
5135 UUID.insert( UUID.end(), U.begin(), U.end() );
5136
-
-
5137uint Context::addDiskObject(uint Ndivs, const vec3 &center, const vec2 &size, const SphericalCoord &rotation ){
-
5138 return addDiskObject(make_int2(Ndivs,1),center,size,rotation,make_RGBAcolor(1,0,0,1));
-
5139}
-
+
5137 }else{ //normals point outward
+
5138
+
5139 // x-z faces (vertical)
5140
-
-
5141uint Context::addDiskObject(uint Ndivs, const vec3 &center, const vec2 &size, const SphericalCoord &rotation, const RGBcolor &color ){
-
5142 return addDiskObject(make_int2(Ndivs,1),center,size,rotation,make_RGBAcolor(color,1));
-
5143}
-
-
5144
-
-
5145uint Context::addDiskObject(uint Ndivs, const vec3 &center, const vec2 &size, const SphericalCoord &rotation, const RGBAcolor &color ){
-
5146 return addDiskObject(make_int2(Ndivs,1),center,size,rotation,color);
-
5147}
-
-
5148
-
-
5149uint Context::addDiskObject(uint Ndivs, const vec3 &center, const vec2 &size, const SphericalCoord &rotation, const char* texture_file ){
-
5150 return addDiskObject(make_int2(Ndivs,1),center,size,rotation,texture_file);
-
5151}
-
+
5141 //right
+
5142 subcenter = center + make_vec3(0,0.5f*size.y,0);
+
5143 U = addTile( subcenter, make_vec2(size.x,size.z), make_SphericalCoord(0.5*M_PI,0), make_int2(subdiv.x,subdiv.z), texturefile );
+
5144 UUID.insert( UUID.end(), U.begin(), U.end() );
+
5145
+
5146 //left
+
5147 subcenter = center - make_vec3(0,0.5f*size.y,0);
+
5148 U = addTile( subcenter, make_vec2(size.x,size.z), make_SphericalCoord(0.5*M_PI,M_PI), make_int2(subdiv.x,subdiv.z), texturefile );
+
5149 UUID.insert( UUID.end(), U.begin(), U.end() );
+
5150
+
5151 // y-z faces (vertical)
5152
-
-
5153uint Context::addDiskObject(const int2 &Ndivs, const vec3 &center, const vec2 &size, const SphericalCoord &rotation, const RGBcolor &color ){
-
5154 return addDiskObject(Ndivs,center,size,rotation,make_RGBAcolor(color,1));
-
5155}
-
-
5156
-
-
5157uint Context::addDiskObject(const int2 &Ndivs, const vec3 &center, const vec2 &size, const SphericalCoord &rotation, const RGBAcolor &color ){
-
5158
-
5159 std::vector<uint> UUID;
-
5160
-
5161 UUID.resize(Ndivs.x+Ndivs.x*(Ndivs.y-1)*2);
-
5162 int i=0;
-
5163 for( int r=0; r < Ndivs.y; r++ ) {
-
5164 for (int t = 0; t < Ndivs.x; t++) {
-
5165
-
5166 float dtheta = 2.f * float(M_PI) / float(Ndivs.x);
-
5167 float theta = dtheta*float(t);
-
5168 float theta_plus = dtheta*float(t+1);
+
5153 //front
+
5154 subcenter = center + make_vec3(0.5f*size.x,0,0);
+
5155 U = addTile( subcenter, make_vec2(size.y,size.z), make_SphericalCoord(0.5*M_PI,0.5*M_PI), make_int2(subdiv.y,subdiv.z), texturefile );
+
5156 UUID.insert( UUID.end(), U.begin(), U.end() );
+
5157
+
5158 //back
+
5159 subcenter = center - make_vec3(0.5f*size.x,0,0);
+
5160 U = addTile( subcenter, make_vec2(size.y,size.z), make_SphericalCoord(0.5*M_PI,1.5*M_PI), make_int2(subdiv.y,subdiv.z), texturefile );
+
5161 UUID.insert( UUID.end(), U.begin(), U.end() );
+
5162
+
5163 // x-y faces (horizontal)
+
5164
+
5165 //top
+
5166 subcenter = center + make_vec3(0,0,0.5f*size.z);
+
5167 U = addTile( subcenter, make_vec2(size.x,size.y), make_SphericalCoord(0,0), make_int2(subdiv.x,subdiv.y), texturefile );
+
5168 UUID.insert( UUID.end(), U.begin(), U.end() );
5169
-
5170 float rx = size.x/float(Ndivs.y)*float(r);
-
5171 float ry = size.y/float(Ndivs.y)*float(r);
-
5172
-
5173 float rx_plus = size.x/float(Ndivs.y)*float(r+1);
-
5174 float ry_plus = size.y/float(Ndivs.y)*float(r+1);
-
5175
-
5176 if( r==0 ) {
-
5177 UUID.at(i) = addTriangle(make_vec3(0, 0, 0), make_vec3(rx_plus * cosf(theta), ry_plus * sinf(theta), 0),make_vec3(rx_plus * cosf(theta_plus), ry_plus * sinf(theta_plus), 0), color);
-
5178 }else{
-
5179 UUID.at(i) = addTriangle(make_vec3(rx * cosf(theta_plus), ry * sinf(theta_plus), 0), make_vec3(rx * cosf(theta), ry * sinf(theta), 0),make_vec3(rx_plus * cosf(theta), ry_plus * sinf(theta), 0), color);
-
5180 i++;
-
5181 UUID.at(i) = addTriangle(make_vec3(rx * cosf(theta_plus), ry * sinf(theta_plus), 0), make_vec3(rx_plus * cosf(theta), ry_plus * sinf(theta), 0),make_vec3(rx_plus * cosf(theta_plus), ry_plus * sinf(theta_plus), 0), color);
-
5182 }
-
5183 getPrimitivePointer_private(UUID.at(i))->rotate(rotation.elevation, "y");
-
5184 getPrimitivePointer_private(UUID.at(i))->rotate(rotation.azimuth, "z");
-
5185 getPrimitivePointer_private(UUID.at(i))->translate(center);
-
5186
-
5187 i++;
-
5188 }
-
5189 }
-
5190
-
5191 auto* disk_new = (new Disk(currentObjectID, UUID, Ndivs, "", this));
+
5170 //bottom
+
5171 subcenter = center - make_vec3(0,0,0.5f*size.z);
+
5172 U = addTile( subcenter, make_vec2(size.x,size.y), make_SphericalCoord(M_PI,0), make_int2(subdiv.x,subdiv.y), texturefile );
+
5173 UUID.insert( UUID.end(), U.begin(), U.end() );
+
5174
+
5175 }
+
5176
+
5177 auto* box_new = (new Box(currentObjectID, UUID, subdiv, texturefile, this));
+
5178
+
5179 float T[16], transform[16];
+
5180 box_new->getTransformationMatrix( transform );
+
5181
+
5182 makeScaleMatrix(size,T);
+
5183 matmult(T,transform,transform);
+
5184
+
5185 makeTranslationMatrix(center,T);
+
5186 matmult(T,transform,transform);
+
5187 box_new->setTransformationMatrix( transform );
+
5188
+
5189 for( uint p : UUID){
+
5190 getPrimitivePointer_private(p)->setParentObjectID(currentObjectID);
+
5191 }
5192
-
5193 float T[16], transform[16];
-
5194 disk_new->getTransformationMatrix( transform );
-
5195
-
5196 makeScaleMatrix(make_vec3(size.x,size.y,1.f),T);
-
5197 matmult(T,transform,transform);
-
5198
-
5199 makeTranslationMatrix(center,T);
-
5200 matmult(T,transform,transform);
-
5201 disk_new->setTransformationMatrix( transform );
-
5202
-
5203 disk_new->setColor( color );
-
5204
-
5205 for( uint p : UUID){
-
5206 getPrimitivePointer_private(p)->setParentObjectID(currentObjectID);
-
5207 }
-
5208
-
5209 objects[currentObjectID] = disk_new;
-
5210 currentObjectID++;
-
5211 return currentObjectID-1;
-
5212
-
5213}
-
-
5214
-
-
5215uint Context::addDiskObject(const int2 &Ndivs, const vec3 &center, const vec2 &size, const SphericalCoord &rotation, const char* texturefile ){
-
5216
-
5217 if( !validateTextureFileExtenstion(texturefile) ) {
-
5218 helios_runtime_error("ERROR (Context::addDiskObject): Texture file " + std::string(texturefile) + " is not PNG or JPEG format.");
-
5219 }else if( !doesTextureFileExist(texturefile) ){
-
5220 helios_runtime_error("ERROR (Context::addDiskObject): Texture file " + std::string(texturefile) + " does not exist.");
-
5221 }
-
5222
-
5223 std::vector<uint> UUID;
-
5224
-
5225 UUID.resize(Ndivs.x+Ndivs.x*(Ndivs.y-1)*2);
-
5226 int i=0;
-
5227 for( int r=0; r < Ndivs.y; r++ ) {
-
5228 for (int t = 0; t < Ndivs.x; t++) {
-
5229
-
5230 float dtheta = 2.f * float(M_PI) / float(Ndivs.x);
-
5231 float theta = dtheta*float(t);
-
5232 float theta_plus = dtheta*float(t+1);
-
5233
-
5234 float rx = size.x/float(Ndivs.y)*float(r);
-
5235 float ry = size.y/float(Ndivs.y)*float(r);
-
5236 float rx_plus = size.x/float(Ndivs.y)*float(r+1);
-
5237 float ry_plus = size.y/float(Ndivs.y)*float(r+1);
-
5238
-
5239 if( r==0 ) {
-
5240 UUID.at(i) = addTriangle(make_vec3(0, 0, 0), make_vec3(rx_plus * cosf(theta), ry_plus * sinf(theta), 0), make_vec3(rx_plus * cosf(theta_plus), ry_plus * sinf(theta_plus), 0), texturefile, make_vec2(0.5, 0.5), make_vec2(0.5f * (1.f + cosf(theta) * rx_plus / size.x), 0.5f * (1.f + sinf(theta) * ry_plus / size.y)), make_vec2(0.5f * (1.f + cosf(theta_plus) * rx_plus / size.x), 0.5f * (1.f + sinf(theta_plus) * ry_plus / size.y)));
-
5241 }else{
-
5242 UUID.at(i) = addTriangle(make_vec3(rx * cosf(theta_plus), ry * sinf(theta_plus), 0), make_vec3(rx * cosf(theta), ry * sinf(theta), 0), make_vec3(rx_plus * cosf(theta), ry_plus * sinf(theta), 0), texturefile, make_vec2(0.5f * (1.f + cosf(theta_plus) * rx / size.x), 0.5f * (1.f + sinf(theta_plus) * ry / size.y)), make_vec2(0.5f * (1.f + cosf(theta) * rx / size.x), 0.5f * (1.f + sinf(theta) * ry / size.y)), make_vec2(0.5f * (1.f + cosf(theta) * rx_plus / size.x), 0.5f * (1.f + sinf(theta) * ry_plus / size.y)));
-
5243 i++;
-
5244 UUID.at(i) = addTriangle(make_vec3(rx * cosf(theta_plus), ry * sinf(theta_plus), 0), make_vec3(rx_plus * cosf(theta), ry_plus * sinf(theta), 0), make_vec3(rx_plus * cosf(theta_plus), ry_plus * sinf(theta_plus), 0), texturefile, make_vec2(0.5f * (1.f + cosf(theta_plus) * rx / size.x), 0.5f * (1.f + sinf(theta_plus) * ry / size.y)), make_vec2(0.5f * (1.f + cosf(theta) * rx_plus / size.x), 0.5f * (1.f + sinf(theta) * ry_plus / size.y)), make_vec2(0.5f * (1.f + cosf(theta_plus) * rx_plus / size.x), 0.5f * (1.f + sinf(theta_plus) * ry_plus / size.y)));
-
5245 }
-
5246 getPrimitivePointer_private(UUID.at(i))->rotate(rotation.elevation, "y");
-
5247 getPrimitivePointer_private(UUID.at(i))->rotate(rotation.azimuth, "z");
-
5248 getPrimitivePointer_private(UUID.at(i))->translate(center);
-
5249
-
5250 i++;
-
5251 }
-
5252 }
+
5193 objects[currentObjectID] = box_new;
+
5194 currentObjectID++;
+
5195 return currentObjectID-1;
+
5196
+
5197
+
5198}
+
+
5199
+
+
5200uint Context::addDiskObject(uint Ndivs, const vec3 &center, const vec2 &size ){
+
5201 return addDiskObject(make_int2(Ndivs,1),center,size,make_SphericalCoord(0,0),make_RGBAcolor(1,0,0,1));
+
5202}
+
+
5203
+
+
5204uint Context::addDiskObject(uint Ndivs, const vec3 &center, const vec2 &size, const SphericalCoord &rotation ){
+
5205 return addDiskObject(make_int2(Ndivs,1),center,size,rotation,make_RGBAcolor(1,0,0,1));
+
5206}
+
+
5207
+
+
5208uint Context::addDiskObject(uint Ndivs, const vec3 &center, const vec2 &size, const SphericalCoord &rotation, const RGBcolor &color ){
+
5209 return addDiskObject(make_int2(Ndivs,1),center,size,rotation,make_RGBAcolor(color,1));
+
5210}
+
+
5211
+
+
5212uint Context::addDiskObject(uint Ndivs, const vec3 &center, const vec2 &size, const SphericalCoord &rotation, const RGBAcolor &color ){
+
5213 return addDiskObject(make_int2(Ndivs,1),center,size,rotation,color);
+
5214}
+
+
5215
+
+
5216uint Context::addDiskObject(uint Ndivs, const vec3 &center, const vec2 &size, const SphericalCoord &rotation, const char* texture_file ){
+
5217 return addDiskObject(make_int2(Ndivs,1),center,size,rotation,texture_file);
+
5218}
+
+
5219
+
+
5220uint Context::addDiskObject(const int2 &Ndivs, const vec3 &center, const vec2 &size, const SphericalCoord &rotation, const RGBcolor &color ){
+
5221 return addDiskObject(Ndivs,center,size,rotation,make_RGBAcolor(color,1));
+
5222}
+
+
5223
+
+
5224uint Context::addDiskObject(const int2 &Ndivs, const vec3 &center, const vec2 &size, const SphericalCoord &rotation, const RGBAcolor &color ){
+
5225
+
5226 std::vector<uint> UUID;
+
5227
+
5228 UUID.resize(Ndivs.x+Ndivs.x*(Ndivs.y-1)*2);
+
5229 int i=0;
+
5230 for( int r=0; r < Ndivs.y; r++ ) {
+
5231 for (int t = 0; t < Ndivs.x; t++) {
+
5232
+
5233 float dtheta = 2.f * float(M_PI) / float(Ndivs.x);
+
5234 float theta = dtheta*float(t);
+
5235 float theta_plus = dtheta*float(t+1);
+
5236
+
5237 float rx = size.x/float(Ndivs.y)*float(r);
+
5238 float ry = size.y/float(Ndivs.y)*float(r);
+
5239
+
5240 float rx_plus = size.x/float(Ndivs.y)*float(r+1);
+
5241 float ry_plus = size.y/float(Ndivs.y)*float(r+1);
+
5242
+
5243 if( r==0 ) {
+
5244 UUID.at(i) = addTriangle(make_vec3(0, 0, 0), make_vec3(rx_plus * cosf(theta), ry_plus * sinf(theta), 0),make_vec3(rx_plus * cosf(theta_plus), ry_plus * sinf(theta_plus), 0), color);
+
5245 }else{
+
5246 UUID.at(i) = addTriangle(make_vec3(rx * cosf(theta_plus), ry * sinf(theta_plus), 0), make_vec3(rx * cosf(theta), ry * sinf(theta), 0),make_vec3(rx_plus * cosf(theta), ry_plus * sinf(theta), 0), color);
+
5247 i++;
+
5248 UUID.at(i) = addTriangle(make_vec3(rx * cosf(theta_plus), ry * sinf(theta_plus), 0), make_vec3(rx_plus * cosf(theta), ry_plus * sinf(theta), 0),make_vec3(rx_plus * cosf(theta_plus), ry_plus * sinf(theta_plus), 0), color);
+
5249 }
+
5250 getPrimitivePointer_private(UUID.at(i))->rotate(rotation.elevation, "y");
+
5251 getPrimitivePointer_private(UUID.at(i))->rotate(rotation.azimuth, "z");
+
5252 getPrimitivePointer_private(UUID.at(i))->translate(center);
5253
-
5254 auto* disk_new = (new Disk(currentObjectID, UUID, Ndivs, texturefile, this));
-
5255
-
5256 float T[16], transform[16];
-
5257 disk_new->getTransformationMatrix( transform );
-
5258
-
5259 makeScaleMatrix(make_vec3(size.x,size.y,1.f),T);
-
5260 matmult(T,transform,transform);
-
5261
-
5262 makeTranslationMatrix(center,T);
-
5263 matmult(T,transform,transform);
-
5264 disk_new->setTransformationMatrix( transform );
+
5254 i++;
+
5255 }
+
5256 }
+
5257
+
5258 auto* disk_new = (new Disk(currentObjectID, UUID, Ndivs, "", this));
+
5259
+
5260 float T[16], transform[16];
+
5261 disk_new->getTransformationMatrix( transform );
+
5262
+
5263 makeScaleMatrix(make_vec3(size.x,size.y,1.f),T);
+
5264 matmult(T,transform,transform);
5265
-
5266 for( uint p : UUID){
-
5267 getPrimitivePointer_private(p)->setParentObjectID(currentObjectID);
-
5268 }
+
5266 makeTranslationMatrix(center,T);
+
5267 matmult(T,transform,transform);
+
5268 disk_new->setTransformationMatrix( transform );
5269
-
5270 objects[currentObjectID] = disk_new;
-
5271 currentObjectID++;
-
5272 return currentObjectID-1;
-
5273
-
5274}
-
+
5270 disk_new->setColor( color );
+
5271
+
5272 for( uint p : UUID){
+
5273 getPrimitivePointer_private(p)->setParentObjectID(currentObjectID);
+
5274 }
5275
-
-
5276uint Context::addPolymeshObject(const std::vector<uint> &UUIDs ){
-
5277
-
5278 if( UUIDs.empty() ){
-
5279 helios_runtime_error("ERROR (Context::addPolymeshObject): UUIDs array is empty. Cannot create polymesh object.");
-
5280 }else if( !doesPrimitiveExist(UUIDs) ){
-
5281 helios_runtime_error("ERROR (Context::addPolymeshObject): One or more of the provided UUIDs does not exist. Cannot create polymesh object.");
-
5282 }
+
5276 objects[currentObjectID] = disk_new;
+
5277 currentObjectID++;
+
5278 return currentObjectID-1;
+
5279
+
5280}
+
+
5281
+
+
5282uint Context::addDiskObject(const int2 &Ndivs, const vec3 &center, const vec2 &size, const SphericalCoord &rotation, const char* texturefile ){
5283
-
5284 auto* polymesh_new = (new Polymesh(currentObjectID, UUIDs, "", this));
-
5285
-
5286 float T[16], transform[16];
-
5287 polymesh_new->getTransformationMatrix( transform );
-
5288
-
5289 makeTranslationMatrix( getPrimitivePointer_private( UUIDs.front())->getVertices().front(),T);
-
5290 matmult(T,transform,transform);
-
5291 polymesh_new->setTransformationMatrix( transform );
-
5292
-
5293 for( uint UUID : UUIDs){
-
5294 getPrimitivePointer_private(UUID)->setParentObjectID(currentObjectID);
-
5295 }
+
5284 if( !validateTextureFileExtenstion(texturefile) ) {
+
5285 helios_runtime_error("ERROR (Context::addDiskObject): Texture file " + std::string(texturefile) + " is not PNG or JPEG format.");
+
5286 }else if( !doesTextureFileExist(texturefile) ){
+
5287 helios_runtime_error("ERROR (Context::addDiskObject): Texture file " + std::string(texturefile) + " does not exist.");
+
5288 }
+
5289
+
5290 std::vector<uint> UUID;
+
5291
+
5292 UUID.resize(Ndivs.x+Ndivs.x*(Ndivs.y-1)*2);
+
5293 int i=0;
+
5294 for( int r=0; r < Ndivs.y; r++ ) {
+
5295 for (int t = 0; t < Ndivs.x; t++) {
5296
-
5297 objects[currentObjectID] = polymesh_new;
-
5298 currentObjectID++;
-
5299 return currentObjectID-1;
+
5297 float dtheta = 2.f * float(M_PI) / float(Ndivs.x);
+
5298 float theta = dtheta*float(t);
+
5299 float theta_plus = dtheta*float(t+1);
5300
-
5301}
-
-
5302
-
-
5303uint Context::addConeObject(uint Ndivs, const vec3 &node0, const vec3 &node1, float radius0, float radius1 ){
-
5304
-
5305 RGBcolor color;
-
5306 color = make_RGBcolor(0.f,0.75f,0.f); //Default color is green
-
5307 return addConeObject(Ndivs, node0, node1, radius0, radius1, color);
-
5308}
-
-
5309
-
-
5310uint Context::addConeObject(uint Ndivs, const vec3 &node0, const vec3 &node1, float radius0, float radius1, const RGBcolor &color ){
-
5311
-
5312 const std::vector<helios::vec3> nodes{node0, node1};
-
5313 const std::vector<float> radii{radius0, radius1};
-
5314
-
5315 vec3 vec, convec;
-
5316 std::vector<float> cfact(Ndivs+1);
-
5317 std::vector<float> sfact(Ndivs+1);
-
5318 std::vector<std::vector<vec3> > xyz, normal;
-
5319 xyz.resize(Ndivs+1);
-
5320 normal.resize(Ndivs+1);
-
5321 for( uint j=0; j<Ndivs+1; j++ ){
-
5322 xyz.at(j).resize(2);
-
5323 normal.at(j).resize(2);
-
5324 }
-
5325 vec3 nvec(0.1817f,0.6198f,0.7634f);//random vector to get things going
-
5326
-
5327 for( int j=0; j<Ndivs+1; j++ ){
-
5328 cfact[j]=cosf(2.f*float(M_PI)*float(j)/float(Ndivs));
-
5329 sfact[j]=sinf(2.f*float(M_PI)*float(j)/float(Ndivs));
-
5330 }
-
5331
-
5332 for( int i=0; i<2; i++ ){ //looping over cone segments
-
5333
-
5334 if(i==0){
-
5335 vec.x=nodes[i+1].x-nodes[i].x;
-
5336 vec.y=nodes[i+1].y-nodes[i].y;
-
5337 vec.z=nodes[i+1].z-nodes[i].z;
-
5338 }else if(i==1){
-
5339 vec.x=nodes[i].x-nodes[i-1].x;
-
5340 vec.y=nodes[i].y-nodes[i-1].y;
-
5341 vec.z=nodes[i].z-nodes[i-1].z;
-
5342 }
-
5343
-
5344 float norm;
-
5345 convec = cross(nvec,vec);
-
5346 norm=convec.magnitude();
-
5347 convec.x=convec.x/norm;
-
5348 convec.y=convec.y/norm;
-
5349 convec.z=convec.z/norm;
-
5350 nvec = cross(vec,convec);
-
5351 norm=nvec.magnitude();
-
5352 nvec.x=nvec.x/norm;
-
5353 nvec.y=nvec.y/norm;
-
5354 nvec.z=nvec.z/norm;
+
5301 float rx = size.x/float(Ndivs.y)*float(r);
+
5302 float ry = size.y/float(Ndivs.y)*float(r);
+
5303 float rx_plus = size.x/float(Ndivs.y)*float(r+1);
+
5304 float ry_plus = size.y/float(Ndivs.y)*float(r+1);
+
5305
+
5306 if( r==0 ) {
+
5307 UUID.at(i) = addTriangle(make_vec3(0, 0, 0), make_vec3(rx_plus * cosf(theta), ry_plus * sinf(theta), 0), make_vec3(rx_plus * cosf(theta_plus), ry_plus * sinf(theta_plus), 0), texturefile, make_vec2(0.5, 0.5), make_vec2(0.5f * (1.f + cosf(theta) * rx_plus / size.x), 0.5f * (1.f + sinf(theta) * ry_plus / size.y)), make_vec2(0.5f * (1.f + cosf(theta_plus) * rx_plus / size.x), 0.5f * (1.f + sinf(theta_plus) * ry_plus / size.y)));
+
5308 }else{
+
5309 UUID.at(i) = addTriangle(make_vec3(rx * cosf(theta_plus), ry * sinf(theta_plus), 0), make_vec3(rx * cosf(theta), ry * sinf(theta), 0), make_vec3(rx_plus * cosf(theta), ry_plus * sinf(theta), 0), texturefile, make_vec2(0.5f * (1.f + cosf(theta_plus) * rx / size.x), 0.5f * (1.f + sinf(theta_plus) * ry / size.y)), make_vec2(0.5f * (1.f + cosf(theta) * rx / size.x), 0.5f * (1.f + sinf(theta) * ry / size.y)), make_vec2(0.5f * (1.f + cosf(theta) * rx_plus / size.x), 0.5f * (1.f + sinf(theta) * ry_plus / size.y)));
+
5310 i++;
+
5311 UUID.at(i) = addTriangle(make_vec3(rx * cosf(theta_plus), ry * sinf(theta_plus), 0), make_vec3(rx_plus * cosf(theta), ry_plus * sinf(theta), 0), make_vec3(rx_plus * cosf(theta_plus), ry_plus * sinf(theta_plus), 0), texturefile, make_vec2(0.5f * (1.f + cosf(theta_plus) * rx / size.x), 0.5f * (1.f + sinf(theta_plus) * ry / size.y)), make_vec2(0.5f * (1.f + cosf(theta) * rx_plus / size.x), 0.5f * (1.f + sinf(theta) * ry_plus / size.y)), make_vec2(0.5f * (1.f + cosf(theta_plus) * rx_plus / size.x), 0.5f * (1.f + sinf(theta_plus) * ry_plus / size.y)));
+
5312 }
+
5313 getPrimitivePointer_private(UUID.at(i))->rotate(rotation.elevation, "y");
+
5314 getPrimitivePointer_private(UUID.at(i))->rotate(rotation.azimuth, "z");
+
5315 getPrimitivePointer_private(UUID.at(i))->translate(center);
+
5316
+
5317 i++;
+
5318 }
+
5319 }
+
5320
+
5321 auto* disk_new = (new Disk(currentObjectID, UUID, Ndivs, texturefile, this));
+
5322
+
5323 float T[16], transform[16];
+
5324 disk_new->getTransformationMatrix( transform );
+
5325
+
5326 makeScaleMatrix(make_vec3(size.x,size.y,1.f),T);
+
5327 matmult(T,transform,transform);
+
5328
+
5329 makeTranslationMatrix(center,T);
+
5330 matmult(T,transform,transform);
+
5331 disk_new->setTransformationMatrix( transform );
+
5332
+
5333 for( uint p : UUID){
+
5334 getPrimitivePointer_private(p)->setParentObjectID(currentObjectID);
+
5335 }
+
5336
+
5337 objects[currentObjectID] = disk_new;
+
5338 currentObjectID++;
+
5339 return currentObjectID-1;
+
5340
+
5341}
+
+
5342
+
+
5343uint Context::addPolymeshObject(const std::vector<uint> &UUIDs ){
+
5344
+
5345 if( UUIDs.empty() ){
+
5346 helios_runtime_error("ERROR (Context::addPolymeshObject): UUIDs array is empty. Cannot create polymesh object.");
+
5347 }else if( !doesPrimitiveExist(UUIDs) ){
+
5348 helios_runtime_error("ERROR (Context::addPolymeshObject): One or more of the provided UUIDs does not exist. Cannot create polymesh object.");
+
5349 }
+
5350
+
5351 auto* polymesh_new = (new Polymesh(currentObjectID, UUIDs, "", this));
+
5352
+
5353 float T[16], transform[16];
+
5354 polymesh_new->getTransformationMatrix( transform );
5355
-
5356 for( int j=0; j<Ndivs+1; j++ ){
-
5357 normal[j][i].x=cfact[j]*radii[i]*nvec.x+sfact[j]*radii[i]*convec.x;
-
5358 normal[j][i].y=cfact[j]*radii[i]*nvec.y+sfact[j]*radii[i]*convec.y;
-
5359 normal[j][i].z=cfact[j]*radii[i]*nvec.z+sfact[j]*radii[i]*convec.z;
-
5360
-
5361 xyz[j][i].x=nodes[i].x+normal[j][i].x;
-
5362 xyz[j][i].y=nodes[i].y+normal[j][i].y;
-
5363 xyz[j][i].z=nodes[i].z+normal[j][i].z;
-
5364
-
5365 normal[j][i] = normal[j][i]/radii[i];
-
5366 }
+
5356 makeTranslationMatrix( getPrimitivePointer_private( UUIDs.front())->getVertices().front(),T);
+
5357 matmult(T,transform,transform);
+
5358 polymesh_new->setTransformationMatrix( transform );
+
5359
+
5360 for( uint UUID : UUIDs){
+
5361 getPrimitivePointer_private(UUID)->setParentObjectID(currentObjectID);
+
5362 }
+
5363
+
5364 objects[currentObjectID] = polymesh_new;
+
5365 currentObjectID++;
+
5366 return currentObjectID-1;
5367
-
5368 }
+
5368}
+
5369
-
5370 vec3 v0, v1, v2;
-
5371 std::vector<uint> UUID(2*Ndivs);
-
5372
-
5373 int i=0;
-
5374 for( int j=0; j<Ndivs; j++ ){
-
5375
-
5376 v0 = xyz[j][0];
-
5377 v1 = xyz[j+1][1];
-
5378 v2 = xyz[j+1][0];
-
5379
-
5380 UUID.at(i) = addTriangle( v0, v1, v2, color );
+
+
5370uint Context::addConeObject(uint Ndivs, const vec3 &node0, const vec3 &node1, float radius0, float radius1 ){
+
5371
+
5372 RGBcolor color;
+
5373 color = make_RGBcolor(0.f,0.75f,0.f); //Default color is green
+
5374 return addConeObject(Ndivs, node0, node1, radius0, radius1, color);
+
5375}
+
+
5376
+
+
5377uint Context::addConeObject(uint Ndivs, const vec3 &node0, const vec3 &node1, float radius0, float radius1, const RGBcolor &color ){
+
5378
+
5379 const std::vector<helios::vec3> nodes{node0, node1};
+
5380 const std::vector<float> radii{radius0, radius1};
5381
-
5382 v0 = xyz[j][0];
-
5383 v1 = xyz[j][1];
-
5384 v2 = xyz[j+1][1];
-
5385
-
5386 UUID.at(i+1) = addTriangle( v0, v1, v2, color );
-
5387
-
5388 i+=2;
-
5389 }
-
5390
-
5391 auto* cone_new = (new Cone(currentObjectID, UUID, node0, node1, radius0, radius1, Ndivs, "", this));
-
5392
-
5393 for( uint p : UUID){
-
5394 getPrimitivePointer_private(p)->setParentObjectID(currentObjectID);
-
5395 }
-
5396
-
5397 cone_new->setColor( color );
+
5382 vec3 vec, convec;
+
5383 std::vector<float> cfact(Ndivs+1);
+
5384 std::vector<float> sfact(Ndivs+1);
+
5385 std::vector<std::vector<vec3> > xyz, normal;
+
5386 xyz.resize(Ndivs+1);
+
5387 normal.resize(Ndivs+1);
+
5388 for( uint j=0; j<Ndivs+1; j++ ){
+
5389 xyz.at(j).resize(2);
+
5390 normal.at(j).resize(2);
+
5391 }
+
5392 vec3 nvec(0.1817f,0.6198f,0.7634f);//random vector to get things going
+
5393
+
5394 for( int j=0; j<Ndivs+1; j++ ){
+
5395 cfact[j]=cosf(2.f*float(M_PI)*float(j)/float(Ndivs));
+
5396 sfact[j]=sinf(2.f*float(M_PI)*float(j)/float(Ndivs));
+
5397 }
5398
-
5399 objects[currentObjectID] = cone_new;
-
5400 currentObjectID++;
-
5401 return currentObjectID-1;
-
5402
-
5403}
-
-
5404
-
-
5405uint Context::addConeObject(uint Ndivs, const vec3 &node0, const vec3 &node1, float radius0, float radius1, const char* texturefile ){
-
5406
-
5407 if( !validateTextureFileExtenstion(texturefile) ) {
-
5408 helios_runtime_error("ERROR (Context::addConeObject): Texture file " + std::string(texturefile) + " is not PNG or JPEG format.");
-
5409 }else if( !doesTextureFileExist(texturefile) ) {
-
5410 helios_runtime_error("ERROR (Context::addConeObject): Texture file " + std::string(texturefile) + " does not exist.");
-
5411 }
-
5412
-
5413 const std::vector<helios::vec3> nodes{node0, node1};
-
5414 const std::vector<float> radii{radius0, radius1};
-
5415
-
5416 vec3 vec, convec;
-
5417 std::vector<float> cfact(Ndivs+1);
-
5418 std::vector<float> sfact(Ndivs+1);
-
5419 std::vector<std::vector<vec3> > xyz, normal;
-
5420 std::vector<std::vector<vec2> > uv;
-
5421 xyz.resize(Ndivs+1);
-
5422 normal.resize(Ndivs+1);
-
5423 uv.resize(Ndivs+1);
-
5424 for( uint j=0; j<Ndivs+1; j++ ){
-
5425 xyz.at(j).resize(2);
-
5426 normal.at(j).resize(2);
-
5427 uv.at(j).resize(2);
-
5428 }
-
5429 vec3 nvec(0.f,1.f,0.f);
-
5430
-
5431 for( int j=0; j<Ndivs+1; j++ ){
-
5432 cfact[j]=cosf(2.f*float(M_PI)*float(j)/float(Ndivs));
-
5433 sfact[j]=sinf(2.f*float(M_PI)*float(j)/float(Ndivs));
-
5434 }
-
5435
-
5436 for( int i=0; i<2; i++ ){ //looping over cone segments
-
5437
-
5438 if(i==0){
-
5439 vec.x=nodes[i+1].x-nodes[i].x;
-
5440 vec.y=nodes[i+1].y-nodes[i].y;
-
5441 vec.z=nodes[i+1].z-nodes[i].z;
-
5442 }else if(i==1){
-
5443 vec.x=nodes[i].x-nodes[i-1].x;
-
5444 vec.y=nodes[i].y-nodes[i-1].y;
-
5445 vec.z=nodes[i].z-nodes[i-1].z;
-
5446 }
-
5447
-
5448 float norm;
-
5449 convec = cross(nvec,vec);
-
5450 norm=convec.magnitude();
-
5451 convec.x=convec.x/norm;
-
5452 convec.y=convec.y/norm;
-
5453 convec.z=convec.z/norm;
-
5454 nvec = cross(vec,convec);
-
5455 norm=nvec.magnitude();
-
5456 nvec.x=nvec.x/norm;
-
5457 nvec.y=nvec.y/norm;
-
5458 nvec.z=nvec.z/norm;
+
5399 for( int i=0; i<2; i++ ){ //looping over cone segments
+
5400
+
5401 if(i==0){
+
5402 vec.x=nodes[i+1].x-nodes[i].x;
+
5403 vec.y=nodes[i+1].y-nodes[i].y;
+
5404 vec.z=nodes[i+1].z-nodes[i].z;
+
5405 }else if(i==1){
+
5406 vec.x=nodes[i].x-nodes[i-1].x;
+
5407 vec.y=nodes[i].y-nodes[i-1].y;
+
5408 vec.z=nodes[i].z-nodes[i-1].z;
+
5409 }
+
5410
+
5411 float norm;
+
5412 convec = cross(nvec,vec);
+
5413 norm=convec.magnitude();
+
5414 convec.x=convec.x/norm;
+
5415 convec.y=convec.y/norm;
+
5416 convec.z=convec.z/norm;
+
5417 nvec = cross(vec,convec);
+
5418 norm=nvec.magnitude();
+
5419 nvec.x=nvec.x/norm;
+
5420 nvec.y=nvec.y/norm;
+
5421 nvec.z=nvec.z/norm;
+
5422
+
5423 for( int j=0; j<Ndivs+1; j++ ){
+
5424 normal[j][i].x=cfact[j]*radii[i]*nvec.x+sfact[j]*radii[i]*convec.x;
+
5425 normal[j][i].y=cfact[j]*radii[i]*nvec.y+sfact[j]*radii[i]*convec.y;
+
5426 normal[j][i].z=cfact[j]*radii[i]*nvec.z+sfact[j]*radii[i]*convec.z;
+
5427
+
5428 xyz[j][i].x=nodes[i].x+normal[j][i].x;
+
5429 xyz[j][i].y=nodes[i].y+normal[j][i].y;
+
5430 xyz[j][i].z=nodes[i].z+normal[j][i].z;
+
5431
+
5432 normal[j][i] = normal[j][i]/radii[i];
+
5433 }
+
5434
+
5435 }
+
5436
+
5437 vec3 v0, v1, v2;
+
5438 std::vector<uint> UUID(2*Ndivs);
+
5439
+
5440 int i=0;
+
5441 for( int j=0; j<Ndivs; j++ ){
+
5442
+
5443 v0 = xyz[j][0];
+
5444 v1 = xyz[j+1][1];
+
5445 v2 = xyz[j+1][0];
+
5446
+
5447 UUID.at(i) = addTriangle( v0, v1, v2, color );
+
5448
+
5449 v0 = xyz[j][0];
+
5450 v1 = xyz[j][1];
+
5451 v2 = xyz[j+1][1];
+
5452
+
5453 UUID.at(i+1) = addTriangle( v0, v1, v2, color );
+
5454
+
5455 i+=2;
+
5456 }
+
5457
+
5458 auto* cone_new = (new Cone(currentObjectID, UUID, node0, node1, radius0, radius1, Ndivs, "", this));
5459
-
5460 for( int j=0; j<Ndivs+1; j++ ){
-
5461 normal[j][i].x=cfact[j]*radii[i]*nvec.x+sfact[j]*radii[i]*convec.x;
-
5462 normal[j][i].y=cfact[j]*radii[i]*nvec.y+sfact[j]*radii[i]*convec.y;
-
5463 normal[j][i].z=cfact[j]*radii[i]*nvec.z+sfact[j]*radii[i]*convec.z;
-
5464
-
5465 xyz[j][i].x=nodes[i].x+normal[j][i].x;
-
5466 xyz[j][i].y=nodes[i].y+normal[j][i].y;
-
5467 xyz[j][i].z=nodes[i].z+normal[j][i].z;
-
5468
-
5469 uv[j][i].x = float(i)/float(2-1);
-
5470 uv[j][i].y = float(j)/float(Ndivs);
+
5460 for( uint p : UUID){
+
5461 getPrimitivePointer_private(p)->setParentObjectID(currentObjectID);
+
5462 }
+
5463
+
5464 cone_new->setColor( color );
+
5465
+
5466 objects[currentObjectID] = cone_new;
+
5467 currentObjectID++;
+
5468 return currentObjectID-1;
+
5469
+
5470}
+
5471
-
5472 normal[j][i] = normal[j][i]/radii[i];
-
5473 }
-
5474
-
5475 }
-
5476
-
5477 vec3 v0, v1, v2;
-
5478 vec2 uv0, uv1, uv2;
-
5479 std::vector<uint> UUID;
-
5480
-
5481 for( int i=0; i<2-1; i++ ){
-
5482 for( int j=0; j<Ndivs; j++ ){
-
5483
-
5484 v0 = xyz[j][i];
-
5485 v1 = xyz[j+1][i+1];
-
5486 v2 = xyz[j+1][i];
-
5487
-
5488 uv0 = uv[j][i];
-
5489 uv1 = uv[j+1][i+1];
-
5490 uv2 = uv[j+1][i];
-
5491
-
5492 if( (v1-v0).magnitude()>1e-6 && (v2-v0).magnitude()>1e-6 && (v2-v1).magnitude()>1e-6 ){
-
5493 UUID.push_back(addTriangle( v0, v1, v2, texturefile, uv0, uv1, uv2 ));
-
5494 }
-
5495
-
5496 v0 = xyz[j][i];
-
5497 v1 = xyz[j][i+1];
-
5498 v2 = xyz[j+1][i+1];
-
5499
-
5500 uv0 = uv[j][i];
-
5501 uv1 = uv[j][i+1];
-
5502 uv2 = uv[j+1][i+1];
-
5503
-
5504 if( (v1-v0).magnitude()>1e-6 && (v2-v0).magnitude()>1e-6 && (v2-v1).magnitude()>1e-6 ){
-
5505 UUID.push_back(addTriangle( v0, v1, v2, texturefile, uv0, uv1, uv2 ));
-
5506 }
-
5507
-
5508 }
-
5509 }
-
5510
-
5511 auto* cone_new = (new Cone(currentObjectID, UUID, node0, node1, radius0, radius1, Ndivs, texturefile, this));
-
5512
-
5513 for( uint p : UUID){
-
5514 getPrimitivePointer_private(p)->setParentObjectID(currentObjectID);
-
5515 }
-
5516
-
5517 objects[currentObjectID] = cone_new;
-
5518 currentObjectID++;
-
5519 return currentObjectID-1;
-
5520
-
5521}
-
-
5522
-
-
5523std::vector<uint> Context::addSphere(uint Ndivs, const vec3 &center, float radius ){
-
5524
-
5525 RGBcolor color = make_RGBcolor(0.f,0.75f,0.f); //Default color is green
+
+
5472uint Context::addConeObject(uint Ndivs, const vec3 &node0, const vec3 &node1, float radius0, float radius1, const char* texturefile ){
+
5473
+
5474 if( !validateTextureFileExtenstion(texturefile) ) {
+
5475 helios_runtime_error("ERROR (Context::addConeObject): Texture file " + std::string(texturefile) + " is not PNG or JPEG format.");
+
5476 }else if( !doesTextureFileExist(texturefile) ) {
+
5477 helios_runtime_error("ERROR (Context::addConeObject): Texture file " + std::string(texturefile) + " does not exist.");
+
5478 }
+
5479
+
5480 const std::vector<helios::vec3> nodes{node0, node1};
+
5481 const std::vector<float> radii{radius0, radius1};
+
5482
+
5483 vec3 vec, convec;
+
5484 std::vector<float> cfact(Ndivs+1);
+
5485 std::vector<float> sfact(Ndivs+1);
+
5486 std::vector<std::vector<vec3> > xyz, normal;
+
5487 std::vector<std::vector<vec2> > uv;
+
5488 xyz.resize(Ndivs+1);
+
5489 normal.resize(Ndivs+1);
+
5490 uv.resize(Ndivs+1);
+
5491 for( uint j=0; j<Ndivs+1; j++ ){
+
5492 xyz.at(j).resize(2);
+
5493 normal.at(j).resize(2);
+
5494 uv.at(j).resize(2);
+
5495 }
+
5496 vec3 nvec(0.f,1.f,0.f);
+
5497
+
5498 for( int j=0; j<Ndivs+1; j++ ){
+
5499 cfact[j]=cosf(2.f*float(M_PI)*float(j)/float(Ndivs));
+
5500 sfact[j]=sinf(2.f*float(M_PI)*float(j)/float(Ndivs));
+
5501 }
+
5502
+
5503 for( int i=0; i<2; i++ ){ //looping over cone segments
+
5504
+
5505 if(i==0){
+
5506 vec.x=nodes[i+1].x-nodes[i].x;
+
5507 vec.y=nodes[i+1].y-nodes[i].y;
+
5508 vec.z=nodes[i+1].z-nodes[i].z;
+
5509 }else if(i==1){
+
5510 vec.x=nodes[i].x-nodes[i-1].x;
+
5511 vec.y=nodes[i].y-nodes[i-1].y;
+
5512 vec.z=nodes[i].z-nodes[i-1].z;
+
5513 }
+
5514
+
5515 float norm;
+
5516 convec = cross(nvec,vec);
+
5517 norm=convec.magnitude();
+
5518 convec.x=convec.x/norm;
+
5519 convec.y=convec.y/norm;
+
5520 convec.z=convec.z/norm;
+
5521 nvec = cross(vec,convec);
+
5522 norm=nvec.magnitude();
+
5523 nvec.x=nvec.x/norm;
+
5524 nvec.y=nvec.y/norm;
+
5525 nvec.z=nvec.z/norm;
5526
-
5527 return addSphere(Ndivs,center,radius,color);
-
5528
-
5529}
-
-
5530
-
-
5531std::vector<uint> Context::addSphere(uint Ndivs, const vec3 &center, float radius, const RGBcolor &color ){
-
5532
-
5533 std::vector<uint> UUID;
-
5534
-
5535 float theta;
-
5536 float dtheta=M_PI/float(Ndivs);
-
5537 float dphi=2.0f*float(M_PI)/float(Ndivs);
+
5527 for( int j=0; j<Ndivs+1; j++ ){
+
5528 normal[j][i].x=cfact[j]*radii[i]*nvec.x+sfact[j]*radii[i]*convec.x;
+
5529 normal[j][i].y=cfact[j]*radii[i]*nvec.y+sfact[j]*radii[i]*convec.y;
+
5530 normal[j][i].z=cfact[j]*radii[i]*nvec.z+sfact[j]*radii[i]*convec.z;
+
5531
+
5532 xyz[j][i].x=nodes[i].x+normal[j][i].x;
+
5533 xyz[j][i].y=nodes[i].y+normal[j][i].y;
+
5534 xyz[j][i].z=nodes[i].z+normal[j][i].z;
+
5535
+
5536 uv[j][i].x = float(i)/float(2-1);
+
5537 uv[j][i].y = float(j)/float(Ndivs);
5538
-
5539 //bottom cap
-
5540 for( int j=0; j<Ndivs; j++ ){
+
5539 normal[j][i] = normal[j][i]/radii[i];
+
5540 }
5541
-
5542 vec3 v0 = center + sphere2cart( make_SphericalCoord(radius, -0.5f*float(M_PI), 0 ) );
-
5543 vec3 v1 = center + sphere2cart( make_SphericalCoord(radius, -0.5f*float(M_PI)+dtheta, float(j)*dphi ) );
-
5544 vec3 v2 = center + sphere2cart( make_SphericalCoord(radius, -0.5f*float(M_PI)+dtheta, float(j+1)*dphi ) );
-
5545
-
5546 UUID.push_back( addTriangle(v0,v1,v2,color) );
+
5542 }
+
5543
+
5544 vec3 v0, v1, v2;
+
5545 vec2 uv0, uv1, uv2;
+
5546 std::vector<uint> UUID;
5547
-
5548 }
-
5549
-
5550 //top cap
-
5551 for( int j=0; j<Ndivs; j++ ){
-
5552
-
5553 vec3 v0 = center + sphere2cart( make_SphericalCoord(radius, 0.5f*float(M_PI), 0 ) );
-
5554 vec3 v1 = center + sphere2cart( make_SphericalCoord(radius, 0.5f*float(M_PI)-dtheta, float(j)*dphi ) );
-
5555 vec3 v2 = center + sphere2cart( make_SphericalCoord(radius, 0.5f*float(M_PI)-dtheta, float(j+1)*dphi ) );
-
5556
-
5557 UUID.push_back( addTriangle(v2,v1,v0,color) );
+
5548 for( int i=0; i<2-1; i++ ){
+
5549 for( int j=0; j<Ndivs; j++ ){
+
5550
+
5551 v0 = xyz[j][i];
+
5552 v1 = xyz[j+1][i+1];
+
5553 v2 = xyz[j+1][i];
+
5554
+
5555 uv0 = uv[j][i];
+
5556 uv1 = uv[j+1][i+1];
+
5557 uv2 = uv[j+1][i];
5558
-
5559 }
-
5560
-
5561 //middle
-
5562 for( int j=0; j<Ndivs; j++ ){
-
5563 for( int i=1; i<Ndivs-1; i++ ){
-
5564
-
5565 vec3 v0 = center + sphere2cart( make_SphericalCoord(radius, -0.5f*float(M_PI)+float(i)*dtheta, float(j)*dphi ) );
-
5566 vec3 v1 = center + sphere2cart( make_SphericalCoord(radius, -0.5f*float(M_PI)+float(i+1)*dtheta, float(j)*dphi ) );
-
5567 vec3 v2 = center + sphere2cart( make_SphericalCoord(radius, -0.5f*float(M_PI)+float(i+1)*dtheta, float(j+1)*dphi ) );
-
5568 vec3 v3 = center + sphere2cart( make_SphericalCoord(radius, -0.5f*float(M_PI)+float(i)*dtheta, float(j+1)*dphi ) );
-
5569
-
5570 UUID.push_back( addTriangle(v0,v1,v2,color) );
-
5571 UUID.push_back( addTriangle(v0,v2,v3,color) );
-
5572
-
5573 }
-
5574 }
-
5575
-
5576 return UUID;
+
5559 if( (v1-v0).magnitude()>1e-6 && (v2-v0).magnitude()>1e-6 && (v2-v1).magnitude()>1e-6 ){
+
5560 UUID.push_back(addTriangle( v0, v1, v2, texturefile, uv0, uv1, uv2 ));
+
5561 }
+
5562
+
5563 v0 = xyz[j][i];
+
5564 v1 = xyz[j][i+1];
+
5565 v2 = xyz[j+1][i+1];
+
5566
+
5567 uv0 = uv[j][i];
+
5568 uv1 = uv[j][i+1];
+
5569 uv2 = uv[j+1][i+1];
+
5570
+
5571 if( (v1-v0).magnitude()>1e-6 && (v2-v0).magnitude()>1e-6 && (v2-v1).magnitude()>1e-6 ){
+
5572 UUID.push_back(addTriangle( v0, v1, v2, texturefile, uv0, uv1, uv2 ));
+
5573 }
+
5574
+
5575 }
+
5576 }
5577
-
5578
-
5579}
-
-
5580
-
-
5581std::vector<uint> Context::addSphere(uint Ndivs, const vec3 &center, float radius, const char* texturefile ){
-
5582
-
5583 if( !validateTextureFileExtenstion(texturefile) ) {
-
5584 helios_runtime_error("ERROR (Context::addSphere): Texture file " + std::string(texturefile) + " is not PNG or JPEG format.");
-
5585 }else if( !doesTextureFileExist(texturefile) ) {
-
5586 helios_runtime_error("ERROR (Context::addSphere): Texture file " + std::string(texturefile) + " does not exist.");
-
5587 }
-
5588
-
5589 std::vector<uint> UUID;
-
5590
-
5591 float theta;
-
5592 float dtheta=M_PI/float(Ndivs);
-
5593 float dphi=2.0f*float(M_PI)/float(Ndivs);
-
5594
-
5595 //bottom cap
-
5596 for( int j=0; j<Ndivs; j++ ){
+
5578 auto* cone_new = (new Cone(currentObjectID, UUID, node0, node1, radius0, radius1, Ndivs, texturefile, this));
+
5579
+
5580 for( uint p : UUID){
+
5581 getPrimitivePointer_private(p)->setParentObjectID(currentObjectID);
+
5582 }
+
5583
+
5584 objects[currentObjectID] = cone_new;
+
5585 currentObjectID++;
+
5586 return currentObjectID-1;
+
5587
+
5588}
+
+
5589
+
+
5590std::vector<uint> Context::addSphere(uint Ndivs, const vec3 &center, float radius ){
+
5591
+
5592 RGBcolor color = make_RGBcolor(0.f,0.75f,0.f); //Default color is green
+
5593
+
5594 return addSphere(Ndivs,center,radius,color);
+
5595
+
5596}
+
5597
-
5598 vec3 v0 = center + sphere2cart( make_SphericalCoord(radius, -0.5f*float(M_PI), 0 ) );
-
5599 vec3 v1 = center + sphere2cart( make_SphericalCoord(radius, -0.5f*float(M_PI)+dtheta, float(j)*dphi ) );
-
5600 vec3 v2 = center + sphere2cart( make_SphericalCoord(radius, -0.5f*float(M_PI)+dtheta, float(j+1)*dphi ) );
+
+
5598std::vector<uint> Context::addSphere(uint Ndivs, const vec3 &center, float radius, const RGBcolor &color ){
+
5599
+
5600 std::vector<uint> UUID;
5601
-
5602 vec3 n0 = v0-center;
-
5603 n0.normalize();
-
5604 vec3 n1 = v1-center;
-
5605 n1.normalize();
-
5606 vec3 n2 = v2-center;
-
5607 n2.normalize();
+
5602 float theta;
+
5603 float dtheta=M_PI/float(Ndivs);
+
5604 float dphi=2.0f*float(M_PI)/float(Ndivs);
+
5605
+
5606 //bottom cap
+
5607 for( int j=0; j<Ndivs; j++ ){
5608
-
5609 vec2 uv0 = make_vec2( 1.f - atan2f( sin((float(j)+0.5f)*dphi), -cos((float(j)+0.5f)*dphi) )/float(2.f*M_PI) - 0.5f, 1.f - n0.z*0.5f - 0.5f );
-
5610 vec2 uv1 = make_vec2( 1.f - atan2f( n1.x, -n1.y )/float(2.f*M_PI) - 0.5f, 1.f - n1.z*0.5f - 0.5f );
-
5611 vec2 uv2 = make_vec2( 1.f - atan2f( n2.x, -n2.y )/float(2.f*M_PI) - 0.5f, 1.f - n2.z*0.5f - 0.5f );
+
5609 vec3 v0 = center + sphere2cart( make_SphericalCoord(radius, -0.5f*float(M_PI), 0 ) );
+
5610 vec3 v1 = center + sphere2cart( make_SphericalCoord(radius, -0.5f*float(M_PI)+dtheta, float(j)*dphi ) );
+
5611 vec3 v2 = center + sphere2cart( make_SphericalCoord(radius, -0.5f*float(M_PI)+dtheta, float(j+1)*dphi ) );
5612
-
5613 if( j==Ndivs-1 ){
-
5614 uv2.x = 1;
-
5615 }
+
5613 UUID.push_back( addTriangle(v0,v1,v2,color) );
+
5614
+
5615 }
5616
-
5617 UUID.push_back( addTriangle(v0,v1,v2,texturefile,uv0,uv1,uv2) );
-
5618
-
5619 }
-
5620
-
5621 //top cap
-
5622 for( int j=0; j<Ndivs; j++ ){
+
5617 //top cap
+
5618 for( int j=0; j<Ndivs; j++ ){
+
5619
+
5620 vec3 v0 = center + sphere2cart( make_SphericalCoord(radius, 0.5f*float(M_PI), 0 ) );
+
5621 vec3 v1 = center + sphere2cart( make_SphericalCoord(radius, 0.5f*float(M_PI)-dtheta, float(j)*dphi ) );
+
5622 vec3 v2 = center + sphere2cart( make_SphericalCoord(radius, 0.5f*float(M_PI)-dtheta, float(j+1)*dphi ) );
5623
-
5624 vec3 v0 = center + sphere2cart( make_SphericalCoord(radius, 0.5f*float(M_PI), 0 ) );
-
5625 vec3 v1 = center + sphere2cart( make_SphericalCoord(radius, 0.5f*float(M_PI)-dtheta, float(j+1)*dphi ) );
-
5626 vec3 v2 = center + sphere2cart( make_SphericalCoord(radius, 0.5f*float(M_PI)-dtheta, float(j)*dphi ) );
+
5624 UUID.push_back( addTriangle(v2,v1,v0,color) );
+
5625
+
5626 }
5627
-
5628 vec3 n0 = v0-center;
-
5629 n0.normalize();
-
5630 vec3 n1 = v1-center;
-
5631 n1.normalize();
-
5632 vec3 n2 = v2-center;
-
5633 n2.normalize();
-
5634
-
5635 vec2 uv0 = make_vec2( 1.f - atan2f( sinf((float(j)+0.5f)*dphi), -cosf((float(j)+0.5f)*dphi) )/float(2.f*M_PI) - 0.5f, 1.f - n0.z*0.5f - 0.5f );
-
5636 vec2 uv1 = make_vec2( 1.f - atan2f( n1.x, -n1.y )/float(2.f*M_PI) - 0.5f, 1.f - n1.z*0.5f - 0.5f );
-
5637 vec2 uv2 = make_vec2( 1.f - atan2f( n2.x, -n2.y )/float(2.f*M_PI) - 0.5f, 1.f - n2.z*0.5f - 0.5f );
-
5638
-
5639 if( j==Ndivs-1 ){
-
5640 uv2.x = 1;
-
5641 }
+
5628 //middle
+
5629 for( int j=0; j<Ndivs; j++ ){
+
5630 for( int i=1; i<Ndivs-1; i++ ){
+
5631
+
5632 vec3 v0 = center + sphere2cart( make_SphericalCoord(radius, -0.5f*float(M_PI)+float(i)*dtheta, float(j)*dphi ) );
+
5633 vec3 v1 = center + sphere2cart( make_SphericalCoord(radius, -0.5f*float(M_PI)+float(i+1)*dtheta, float(j)*dphi ) );
+
5634 vec3 v2 = center + sphere2cart( make_SphericalCoord(radius, -0.5f*float(M_PI)+float(i+1)*dtheta, float(j+1)*dphi ) );
+
5635 vec3 v3 = center + sphere2cart( make_SphericalCoord(radius, -0.5f*float(M_PI)+float(i)*dtheta, float(j+1)*dphi ) );
+
5636
+
5637 UUID.push_back( addTriangle(v0,v1,v2,color) );
+
5638 UUID.push_back( addTriangle(v0,v2,v3,color) );
+
5639
+
5640 }
+
5641 }
5642
-
5643 UUID.push_back( addTriangle(v0,v1,v2,texturefile,uv0,uv1,uv2) );
+
5643 return UUID;
5644
-
5645 }
-
5646
-
5647 //middle
-
5648 for( int j=0; j<Ndivs; j++ ){
-
5649 for( int i=1; i<Ndivs-1; i++ ){
-
5650
-
5651 vec3 v0 = center + sphere2cart( make_SphericalCoord(radius, -0.5f*float(M_PI)+float(i)*dtheta, float(j)*dphi ) );
-
5652 vec3 v1 = center + sphere2cart( make_SphericalCoord(radius, -0.5f*float(M_PI)+float(i+1)*dtheta, float(j)*dphi ) );
-
5653 vec3 v2 = center + sphere2cart( make_SphericalCoord(radius, -0.5f*float(M_PI)+float(i+1)*dtheta, float(j+1)*dphi ) );
-
5654 vec3 v3 = center + sphere2cart( make_SphericalCoord(radius, -0.5f*float(M_PI)+float(i)*dtheta, float(j+1)*dphi ) );
+
5645
+
5646}
+
+
5647
+
+
5648std::vector<uint> Context::addSphere(uint Ndivs, const vec3 &center, float radius, const char* texturefile ){
+
5649
+
5650 if( !validateTextureFileExtenstion(texturefile) ) {
+
5651 helios_runtime_error("ERROR (Context::addSphere): Texture file " + std::string(texturefile) + " is not PNG or JPEG format.");
+
5652 }else if( !doesTextureFileExist(texturefile) ) {
+
5653 helios_runtime_error("ERROR (Context::addSphere): Texture file " + std::string(texturefile) + " does not exist.");
+
5654 }
5655
-
5656 vec3 n0 = v0-center;
-
5657 n0.normalize();
-
5658 vec3 n1 = v1-center;
-
5659 n1.normalize();
-
5660 vec3 n2 = v2-center;
-
5661 n2.normalize();
-
5662 vec3 n3 = v3-center;
-
5663 n3.normalize();
+
5656 std::vector<uint> UUID;
+
5657
+
5658 float theta;
+
5659 float dtheta=M_PI/float(Ndivs);
+
5660 float dphi=2.0f*float(M_PI)/float(Ndivs);
+
5661
+
5662 //bottom cap
+
5663 for( int j=0; j<Ndivs; j++ ){
5664
-
5665 vec2 uv0 = make_vec2( 1.f - atan2f( n0.x, -n0.y )/float(2.f*M_PI) - 0.5f, 1.f - n0.z*0.5f - 0.5f );
-
5666 vec2 uv1 = make_vec2( 1.f - atan2f( n1.x, -n1.y )/float(2.f*M_PI) - 0.5f, 1.f - n1.z*0.5f - 0.5f );
-
5667 vec2 uv2 = make_vec2( 1.f - atan2f( n2.x, -n2.y )/float(2.f*M_PI) - 0.5f, 1.f - n2.z*0.5f - 0.5f );
-
5668 vec2 uv3 = make_vec2( 1.f - atan2f( n3.x, -n3.y )/float(2.f*M_PI) - 0.5f, 1.f - n3.z*0.5f - 0.5f );
-
5669
-
5670 if( j==Ndivs-1 ){
-
5671 uv2.x = 1;
-
5672 uv3.x = 1;
-
5673 }
-
5674
-
5675 UUID.push_back( addTriangle(v0,v1,v2,texturefile,uv0,uv1,uv2) );
-
5676 UUID.push_back( addTriangle(v0,v2,v3,texturefile,uv0,uv2,uv3) );
-
5677
-
5678 }
-
5679 }
-
5680
-
5681 return UUID;
-
5682
+
5665 vec3 v0 = center + sphere2cart( make_SphericalCoord(radius, -0.5f*float(M_PI), 0 ) );
+
5666 vec3 v1 = center + sphere2cart( make_SphericalCoord(radius, -0.5f*float(M_PI)+dtheta, float(j)*dphi ) );
+
5667 vec3 v2 = center + sphere2cart( make_SphericalCoord(radius, -0.5f*float(M_PI)+dtheta, float(j+1)*dphi ) );
+
5668
+
5669 vec3 n0 = v0-center;
+
5670 n0.normalize();
+
5671 vec3 n1 = v1-center;
+
5672 n1.normalize();
+
5673 vec3 n2 = v2-center;
+
5674 n2.normalize();
+
5675
+
5676 vec2 uv0 = make_vec2( 1.f - atan2f( sin((float(j)+0.5f)*dphi), -cos((float(j)+0.5f)*dphi) )/float(2.f*M_PI) - 0.5f, 1.f - n0.z*0.5f - 0.5f );
+
5677 vec2 uv1 = make_vec2( 1.f - atan2f( n1.x, -n1.y )/float(2.f*M_PI) - 0.5f, 1.f - n1.z*0.5f - 0.5f );
+
5678 vec2 uv2 = make_vec2( 1.f - atan2f( n2.x, -n2.y )/float(2.f*M_PI) - 0.5f, 1.f - n2.z*0.5f - 0.5f );
+
5679
+
5680 if( j==Ndivs-1 ){
+
5681 uv2.x = 1;
+
5682 }
5683
-
5684}
-
+
5684 UUID.push_back( addTriangle(v0,v1,v2,texturefile,uv0,uv1,uv2) );
5685
-
-
5686std::vector<uint> Context::addTile(const vec3 &center, const vec2 &size, const SphericalCoord &rotation, const int2 &subdiv ){
+
5686 }
5687
-
5688 RGBcolor color = make_RGBcolor(0.f,0.75f,0.f); //Default color is green
-
5689
-
5690 return addTile(center,size,rotation,subdiv,color);
-
5691}
-
-
5692
-
-
5693std::vector<uint> Context::addTile(const vec3 &center, const vec2 &size, const SphericalCoord &rotation, const int2 &subdiv, const RGBcolor &color ){
+
5688 //top cap
+
5689 for( int j=0; j<Ndivs; j++ ){
+
5690
+
5691 vec3 v0 = center + sphere2cart( make_SphericalCoord(radius, 0.5f*float(M_PI), 0 ) );
+
5692 vec3 v1 = center + sphere2cart( make_SphericalCoord(radius, 0.5f*float(M_PI)-dtheta, float(j+1)*dphi ) );
+
5693 vec3 v2 = center + sphere2cart( make_SphericalCoord(radius, 0.5f*float(M_PI)-dtheta, float(j)*dphi ) );
5694
-
5695 std::vector<uint> UUID;
-
5696
-
5697 vec2 subsize;
-
5698 subsize.x = size.x/float(subdiv.x);
-
5699 subsize.y = size.y/float(subdiv.y);
-
5700
-
5701 vec3 subcenter;
-
5702
-
5703 UUID.resize( subdiv.x*subdiv.y );
-
5704
-
5705 size_t t = 0;
-
5706 for( uint j=0; j<subdiv.y; j++ ){
-
5707 for( uint i=0; i<subdiv.x; i++ ){
-
5708
-
5709 subcenter = make_vec3(-0.5f*size.x+(float(i)+0.5f)*subsize.x,-0.5f*size.y+(float(j)+0.5f)*subsize.y,0);
-
5710
-
5711 UUID[t] = addPatch( subcenter, subsize, make_SphericalCoord(0,0), color );
-
5712
-
5713 if( rotation.elevation!=0.f ){
-
5714 getPrimitivePointer_private( UUID[t] )->rotate( -rotation.elevation, "x" );
-
5715 }
-
5716 if( rotation.azimuth!=0.f ){
-
5717 getPrimitivePointer_private( UUID[t] )->rotate( -rotation.azimuth, "z" );
-
5718 }
-
5719 getPrimitivePointer_private( UUID[t] )->translate( center );
-
5720
-
5721 t++;
+
5695 vec3 n0 = v0-center;
+
5696 n0.normalize();
+
5697 vec3 n1 = v1-center;
+
5698 n1.normalize();
+
5699 vec3 n2 = v2-center;
+
5700 n2.normalize();
+
5701
+
5702 vec2 uv0 = make_vec2( 1.f - atan2f( sinf((float(j)+0.5f)*dphi), -cosf((float(j)+0.5f)*dphi) )/float(2.f*M_PI) - 0.5f, 1.f - n0.z*0.5f - 0.5f );
+
5703 vec2 uv1 = make_vec2( 1.f - atan2f( n1.x, -n1.y )/float(2.f*M_PI) - 0.5f, 1.f - n1.z*0.5f - 0.5f );
+
5704 vec2 uv2 = make_vec2( 1.f - atan2f( n2.x, -n2.y )/float(2.f*M_PI) - 0.5f, 1.f - n2.z*0.5f - 0.5f );
+
5705
+
5706 if( j==Ndivs-1 ){
+
5707 uv2.x = 1;
+
5708 }
+
5709
+
5710 UUID.push_back( addTriangle(v0,v1,v2,texturefile,uv0,uv1,uv2) );
+
5711
+
5712 }
+
5713
+
5714 //middle
+
5715 for( int j=0; j<Ndivs; j++ ){
+
5716 for( int i=1; i<Ndivs-1; i++ ){
+
5717
+
5718 vec3 v0 = center + sphere2cart( make_SphericalCoord(radius, -0.5f*float(M_PI)+float(i)*dtheta, float(j)*dphi ) );
+
5719 vec3 v1 = center + sphere2cart( make_SphericalCoord(radius, -0.5f*float(M_PI)+float(i+1)*dtheta, float(j)*dphi ) );
+
5720 vec3 v2 = center + sphere2cart( make_SphericalCoord(radius, -0.5f*float(M_PI)+float(i+1)*dtheta, float(j+1)*dphi ) );
+
5721 vec3 v3 = center + sphere2cart( make_SphericalCoord(radius, -0.5f*float(M_PI)+float(i)*dtheta, float(j+1)*dphi ) );
5722
-
5723 }
-
5724 }
-
5725
-
5726 return UUID;
-
5727
-
5728}
-
-
5729
-
-
5730std::vector<uint> Context::addTile(const vec3 &center, const vec2 &size, const SphericalCoord &rotation, const int2 &subdiv, const char* texturefile ){
+
5723 vec3 n0 = v0-center;
+
5724 n0.normalize();
+
5725 vec3 n1 = v1-center;
+
5726 n1.normalize();
+
5727 vec3 n2 = v2-center;
+
5728 n2.normalize();
+
5729 vec3 n3 = v3-center;
+
5730 n3.normalize();
5731
-
5732 if( !validateTextureFileExtenstion(texturefile) ) {
-
5733 helios_runtime_error("ERROR (Context::addTile): Texture file " + std::string(texturefile) + " is not PNG or JPEG format.");
-
5734 }else if( !doesTextureFileExist(texturefile) ) {
-
5735 helios_runtime_error("ERROR (Context::addTile): Texture file " + std::string(texturefile) + " does not exist.");
-
5736 }
-
5737
-
5738 std::vector<uint> UUID;
-
5739
-
5740 vec2 subsize;
-
5741 subsize.x = size.x/float(subdiv.x);
-
5742 subsize.y = size.y/float(subdiv.y);
-
5743
-
5744 vec3 subcenter;
-
5745
-
5746 std::vector<helios::vec2> uv;
-
5747 uv.resize(4);
-
5748 vec2 uv_sub;
-
5749 uv_sub.x = 1.f/float(subdiv.x);
-
5750 uv_sub.y = 1.f/float(subdiv.y);
-
5751
-
5752 addTexture( texturefile );
-
5753 std::vector<std::vector<bool> > alpha;
-
5754 if( textures.at(texturefile).hasTransparencyChannel() ){
-
5755 alpha = *textures.at(texturefile).getTransparencyData();
-
5756 }
-
5757
-
5758 int2 sz = textures.at(texturefile).getImageResolution();
-
5759 if( subdiv.x>=sz.x || subdiv.y>=sz.y ){
-
5760 helios_runtime_error("ERROR (Context::addTile): The resolution of the texture image '" + std::string(texturefile) + "' is lower than the number of tile subdivisions. Increase resolution of the texture image.");
-
5761 }
-
5762
-
5763 for( uint j=0; j<subdiv.y; j++ ){
-
5764 for( uint i=0; i<subdiv.x; i++ ){
-
5765
-
5766 subcenter = make_vec3(-0.5f*size.x+(float(i)+0.5f)*subsize.x,-0.5f*size.y+(float(j)+0.5f)*subsize.y,0);
+
5732 vec2 uv0 = make_vec2( 1.f - atan2f( n0.x, -n0.y )/float(2.f*M_PI) - 0.5f, 1.f - n0.z*0.5f - 0.5f );
+
5733 vec2 uv1 = make_vec2( 1.f - atan2f( n1.x, -n1.y )/float(2.f*M_PI) - 0.5f, 1.f - n1.z*0.5f - 0.5f );
+
5734 vec2 uv2 = make_vec2( 1.f - atan2f( n2.x, -n2.y )/float(2.f*M_PI) - 0.5f, 1.f - n2.z*0.5f - 0.5f );
+
5735 vec2 uv3 = make_vec2( 1.f - atan2f( n3.x, -n3.y )/float(2.f*M_PI) - 0.5f, 1.f - n3.z*0.5f - 0.5f );
+
5736
+
5737 if( j==Ndivs-1 ){
+
5738 uv2.x = 1;
+
5739 uv3.x = 1;
+
5740 }
+
5741
+
5742 UUID.push_back( addTriangle(v0,v1,v2,texturefile,uv0,uv1,uv2) );
+
5743 UUID.push_back( addTriangle(v0,v2,v3,texturefile,uv0,uv2,uv3) );
+
5744
+
5745 }
+
5746 }
+
5747
+
5748 return UUID;
+
5749
+
5750
+
5751}
+
+
5752
+
+
5753std::vector<uint> Context::addTile(const vec3 &center, const vec2 &size, const SphericalCoord &rotation, const int2 &subdiv ){
+
5754
+
5755 RGBcolor color = make_RGBcolor(0.f,0.75f,0.f); //Default color is green
+
5756
+
5757 return addTile(center,size,rotation,subdiv,color);
+
5758}
+
+
5759
+
+
5760std::vector<uint> Context::addTile(const vec3 &center, const vec2 &size, const SphericalCoord &rotation, const int2 &subdiv, const RGBcolor &color ){
+
5761
+
5762 std::vector<uint> UUID;
+
5763
+
5764 vec2 subsize;
+
5765 subsize.x = size.x/float(subdiv.x);
+
5766 subsize.y = size.y/float(subdiv.y);
5767
-
5768 uv[0] = make_vec2(float(i)*uv_sub.x,float(j)*uv_sub.y);
-
5769 uv[1] = make_vec2(float(i+1)*uv_sub.x,float(j)*uv_sub.y);
-
5770 uv[2] = make_vec2(float(i+1)*uv_sub.x,float(j+1)*uv_sub.y);
-
5771 uv[3] = make_vec2(float(i)*uv_sub.x,float(j+1)*uv_sub.y);
-
5772
-
5773 auto* patch_new = (new Patch( texturefile, uv, textures, 0, currentUUID ));
-
5774
-
5775 if( patch_new->getSolidFraction()==0 ){
-
5776 delete patch_new;
-
5777 continue;
-
5778 }
+
5768 vec3 subcenter;
+
5769
+
5770 UUID.resize( subdiv.x*subdiv.y );
+
5771
+
5772 size_t t = 0;
+
5773 for( uint j=0; j<subdiv.y; j++ ){
+
5774 for( uint i=0; i<subdiv.x; i++ ){
+
5775
+
5776 subcenter = make_vec3(-0.5f*size.x+(float(i)+0.5f)*subsize.x,-0.5f*size.y+(float(j)+0.5f)*subsize.y,0);
+
5777
+
5778 UUID[t] = addPatch( subcenter, subsize, make_SphericalCoord(0,0), color );
5779
-
5780 assert( size.x>0.f && size.y>0.f );
-
5781 patch_new->scale( make_vec3(subsize.x,subsize.y,1) );
-
5782
-
5783 patch_new->translate( subcenter );
-
5784
-
5785 if( rotation.elevation!=0 ){
-
5786 patch_new->rotate(-rotation.elevation, "x");
-
5787 }
-
5788 if( rotation.azimuth!=0 ){
-
5789 patch_new->rotate(-rotation.azimuth, "z");
-
5790 }
-
5791
-
5792 patch_new->translate( center );
-
5793
-
5794 primitives[currentUUID] = patch_new;
-
5795 markGeometryDirty();
-
5796 currentUUID++;
-
5797 UUID.push_back(currentUUID-1);
+
5780 if( rotation.elevation!=0.f ){
+
5781 getPrimitivePointer_private( UUID[t] )->rotate( -rotation.elevation, "x" );
+
5782 }
+
5783 if( rotation.azimuth!=0.f ){
+
5784 getPrimitivePointer_private( UUID[t] )->rotate( -rotation.azimuth, "z" );
+
5785 }
+
5786 getPrimitivePointer_private( UUID[t] )->translate( center );
+
5787
+
5788 t++;
+
5789
+
5790 }
+
5791 }
+
5792
+
5793 return UUID;
+
5794
+
5795}
+
+
5796
+
+
5797std::vector<uint> Context::addTile(const vec3 &center, const vec2 &size, const SphericalCoord &rotation, const int2 &subdiv, const char* texturefile ){
5798
-
5799
-
5800 }
-
5801 }
-
5802
-
5803 return UUID;
+
5799 if( !validateTextureFileExtenstion(texturefile) ) {
+
5800 helios_runtime_error("ERROR (Context::addTile): Texture file " + std::string(texturefile) + " is not PNG or JPEG format.");
+
5801 }else if( !doesTextureFileExist(texturefile) ) {
+
5802 helios_runtime_error("ERROR (Context::addTile): Texture file " + std::string(texturefile) + " does not exist.");
+
5803 }
5804
-
5805}
-
+
5805 std::vector<uint> UUID;
5806
-
-
5807std::vector<uint> Context::addTube(uint Ndivs, const std::vector<vec3> &nodes, const std::vector<float> &radius ){
-
5808
-
5809 uint node_count = nodes.size();
+
5807 vec2 subsize;
+
5808 subsize.x = size.x/float(subdiv.x);
+
5809 subsize.y = size.y/float(subdiv.y);
5810
-
5811 std::vector<RGBcolor> color;
-
5812 color.resize(node_count);
-
5813
-
5814 for( uint i=0; i<node_count; i++ ){
-
5815 color.at(i) = make_RGBcolor(0.f,0.75f,0.f); //Default color is green
-
5816 }
-
5817
-
5818 return addTube(Ndivs,nodes,radius,color);
-
5819
-
5820}
-
-
5821
-
-
5822std::vector<uint> Context::addTube(uint radial_subdivisions, const std::vector<vec3> &nodes, const std::vector<float> &radius, const std::vector<RGBcolor> &color ){
-
5823
-
5824 const uint node_count = nodes.size();
-
5825
-
5826 if( node_count==0 ){
-
5827 helios_runtime_error("ERROR (Context::addTube): Node and radius arrays are empty.");
-
5828 }else if( node_count!=radius.size() ){
-
5829 helios_runtime_error("ERROR (Context::addTube): Size of `nodes' and `radius' arguments must agree.");
-
5830 }else if( node_count!=color.size() ){
-
5831 helios_runtime_error("ERROR (Context::addTube): Size of `nodes' and `color' arguments must agree.");
-
5832 }
-
5833
-
5834 vec3 vec, convec;
-
5835 std::vector<float> cfact(radial_subdivisions + 1);
-
5836 std::vector<float> sfact(radial_subdivisions + 1);
-
5837 std::vector<std::vector<vec3> > xyz;
-
5838 resize_vector( xyz, node_count, radial_subdivisions + 1 );
+
5811 vec3 subcenter;
+
5812
+
5813 std::vector<helios::vec2> uv;
+
5814 uv.resize(4);
+
5815 vec2 uv_sub;
+
5816 uv_sub.x = 1.f/float(subdiv.x);
+
5817 uv_sub.y = 1.f/float(subdiv.y);
+
5818
+
5819 addTexture( texturefile );
+
5820 std::vector<std::vector<bool> > alpha;
+
5821 if( textures.at(texturefile).hasTransparencyChannel() ){
+
5822 alpha = *textures.at(texturefile).getTransparencyData();
+
5823 }
+
5824
+
5825 int2 sz = textures.at(texturefile).getImageResolution();
+
5826 if( subdiv.x>=sz.x || subdiv.y>=sz.y ){
+
5827 helios_runtime_error("ERROR (Context::addTile): The resolution of the texture image '" + std::string(texturefile) + "' is lower than the number of tile subdivisions. Increase resolution of the texture image.");
+
5828 }
+
5829
+
5830 for( uint j=0; j<subdiv.y; j++ ){
+
5831 for( uint i=0; i<subdiv.x; i++ ){
+
5832
+
5833 subcenter = make_vec3(-0.5f*size.x+(float(i)+0.5f)*subsize.x,-0.5f*size.y+(float(j)+0.5f)*subsize.y,0);
+
5834
+
5835 uv[0] = make_vec2(float(i)*uv_sub.x,float(j)*uv_sub.y);
+
5836 uv[1] = make_vec2(float(i+1)*uv_sub.x,float(j)*uv_sub.y);
+
5837 uv[2] = make_vec2(float(i+1)*uv_sub.x,float(j+1)*uv_sub.y);
+
5838 uv[3] = make_vec2(float(i)*uv_sub.x,float(j+1)*uv_sub.y);
5839
-
5840 vec3 nvec(0.1817f,0.6198f,0.7634f);//random vector to get things going
+
5840 auto* patch_new = (new Patch( texturefile, uv, textures, 0, currentUUID ));
5841
-
5842 for(int j=0; j < radial_subdivisions + 1; j++ ){
-
5843 cfact[j]=cosf(2.f*float(M_PI)*float(j)/float(radial_subdivisions));
-
5844 sfact[j]=sinf(2.f*float(M_PI)*float(j)/float(radial_subdivisions));
-
5845 }
+
5842 if( patch_new->getSolidFraction()==0 ){
+
5843 delete patch_new;
+
5844 continue;
+
5845 }
5846
-
5847 for( int i=0; i<node_count; i++ ){ //looping over tube segments
-
5848
-
5849 if( radius.at(i)<0 ){
-
5850 helios_runtime_error("ERROR (Context::addTube): Radius of tube must be positive.");
-
5851 }
-
5852
-
5853 if(i==0){
-
5854 vec.x=nodes[i+1].x-nodes[i].x;
-
5855 vec.y=nodes[i+1].y-nodes[i].y;
-
5856 vec.z=nodes[i+1].z-nodes[i].z;
-
5857 }else if(i==node_count-1){
-
5858 vec.x=nodes[i].x-nodes[i-1].x;
-
5859 vec.y=nodes[i].y-nodes[i-1].y;
-
5860 vec.z=nodes[i].z-nodes[i-1].z;
-
5861 }else{
-
5862 vec.x=0.5f*( (nodes[i].x-nodes[i-1].x)+(nodes[i+1].x-nodes[i].x) );
-
5863 vec.y=0.5f*( (nodes[i].y-nodes[i-1].y)+(nodes[i+1].y-nodes[i].y) );
-
5864 vec.z=0.5f*( (nodes[i].z-nodes[i-1].z)+(nodes[i+1].z-nodes[i].z) );
-
5865 }
+
5847 assert( size.x>0.f && size.y>0.f );
+
5848 patch_new->scale( make_vec3(subsize.x,subsize.y,1) );
+
5849
+
5850 patch_new->translate( subcenter );
+
5851
+
5852 if( rotation.elevation!=0 ){
+
5853 patch_new->rotate(-rotation.elevation, "x");
+
5854 }
+
5855 if( rotation.azimuth!=0 ){
+
5856 patch_new->rotate(-rotation.azimuth, "z");
+
5857 }
+
5858
+
5859 patch_new->translate( center );
+
5860
+
5861 primitives[currentUUID] = patch_new;
+
5862 markGeometryDirty();
+
5863 currentUUID++;
+
5864 UUID.push_back(currentUUID-1);
+
5865
5866
-
5867 convec = cross(nvec,vec);
-
5868 convec.normalize();
-
5869 nvec = cross(vec,convec);
-
5870 nvec.normalize();
+
5867 }
+
5868 }
+
5869
+
5870 return UUID;
5871
-
5872 for(int j=0; j < radial_subdivisions + 1; j++ ){
+
5872}
+
5873
-
5874 vec3 normal;
-
5875 normal.x=cfact[j]*radius[i]*nvec.x+sfact[j]*radius[i]*convec.x;
-
5876 normal.y=cfact[j]*radius[i]*nvec.y+sfact[j]*radius[i]*convec.y;
-
5877 normal.z=cfact[j]*radius[i]*nvec.z+sfact[j]*radius[i]*convec.z;
-
5878
-
5879 xyz[j][i].x=nodes[i].x+normal.x;
-
5880 xyz[j][i].y=nodes[i].y+normal.y;
-
5881 xyz[j][i].z=nodes[i].z+normal.z;
-
5882
-
5883 }
+
+
5874std::vector<uint> Context::addTube(uint Ndivs, const std::vector<vec3> &nodes, const std::vector<float> &radius ){
+
5875
+
5876 uint node_count = nodes.size();
+
5877
+
5878 std::vector<RGBcolor> color;
+
5879 color.resize(node_count);
+
5880
+
5881 for( uint i=0; i<node_count; i++ ){
+
5882 color.at(i) = make_RGBcolor(0.f,0.75f,0.f); //Default color is green
+
5883 }
5884
-
5885 }
+
5885 return addTube(Ndivs,nodes,radius,color);
5886
-
5887 vec3 v0, v1, v2;
-
5888 std::vector<uint> UUIDs(2 * (node_count-1) * radial_subdivisions );
-
5889
-
5890 int ii=0;
-
5891 for( int i=0; i<node_count-1; i++ ){
-
5892 for(int j=0; j < radial_subdivisions; j++ ){
-
5893
-
5894 v0 = xyz[j][i];
-
5895 v1 = xyz[j+1][i+1];
-
5896 v2 = xyz[j+1][i];
-
5897
-
5898 UUIDs.at(ii) = addTriangle( v0, v1, v2, color.at(i) );
-
5899
-
5900 v0 = xyz[j][i];
-
5901 v1 = xyz[j][i+1];
-
5902 v2 = xyz[j+1][i+1];
-
5903
-
5904 UUIDs.at(ii+1) = addTriangle( v0, v1, v2, color.at(i) );
-
5905
-
5906 ii+=2;
-
5907 }
-
5908 }
-
5909
-
5910 return UUIDs;
-
5911
-
5912}
-
+
5887}
+
+
5888
+
+
5889std::vector<uint> Context::addTube(uint radial_subdivisions, const std::vector<vec3> &nodes, const std::vector<float> &radius, const std::vector<RGBcolor> &color ){
+
5890
+
5891 const uint node_count = nodes.size();
+
5892
+
5893 if( node_count==0 ){
+
5894 helios_runtime_error("ERROR (Context::addTube): Node and radius arrays are empty.");
+
5895 }else if( node_count!=radius.size() ){
+
5896 helios_runtime_error("ERROR (Context::addTube): Size of `nodes' and `radius' arguments must agree.");
+
5897 }else if( node_count!=color.size() ){
+
5898 helios_runtime_error("ERROR (Context::addTube): Size of `nodes' and `color' arguments must agree.");
+
5899 }
+
5900
+
5901 vec3 vec, convec;
+
5902 std::vector<float> cfact(radial_subdivisions + 1);
+
5903 std::vector<float> sfact(radial_subdivisions + 1);
+
5904 std::vector<std::vector<vec3> > xyz;
+
5905 resize_vector( xyz, node_count, radial_subdivisions + 1 );
+
5906
+
5907 vec3 nvec(0.1817f,0.6198f,0.7634f);//random vector to get things going
+
5908
+
5909 for(int j=0; j < radial_subdivisions + 1; j++ ){
+
5910 cfact[j]=cosf(2.f*float(M_PI)*float(j)/float(radial_subdivisions));
+
5911 sfact[j]=sinf(2.f*float(M_PI)*float(j)/float(radial_subdivisions));
+
5912 }
5913
-
-
5914std::vector<uint> Context::addTube(uint radial_subdivisions, const std::vector<vec3> &nodes, const std::vector<float> &radius, const char* texturefile ){
+
5914 for( int i=0; i<node_count; i++ ){ //looping over tube segments
5915
-
5916 if( !validateTextureFileExtenstion(texturefile) ) {
-
5917 helios_runtime_error("ERROR (Context::addTube): Texture file " + std::string(texturefile) + " is not PNG or JPEG format.");
-
5918 }else if( !doesTextureFileExist(texturefile) ) {
-
5919 helios_runtime_error("ERROR (Context::addTube): Texture file " + std::string(texturefile) + " does not exist.");
-
5920 }
-
5921
-
5922 const uint node_count = nodes.size();
-
5923
-
5924 if( node_count==0 ){
-
5925 helios_runtime_error("ERROR (Context::addTube): Node and radius arrays are empty.");
-
5926 }else if( node_count!=radius.size() ){
-
5927 helios_runtime_error("ERROR (Context::addTube): Size of `nodes' and `radius' arguments must agree.");
-
5928 }
-
5929
-
5930 vec3 vec, convec;
-
5931 std::vector<float> cfact(radial_subdivisions + 1);
-
5932 std::vector<float> sfact(radial_subdivisions + 1);
-
5933 std::vector<std::vector<vec3> > xyz, normal;
-
5934 std::vector<std::vector<vec2> > uv;
-
5935 resize_vector( xyz, node_count, radial_subdivisions + 1 );
-
5936 resize_vector( normal, node_count, radial_subdivisions + 1 );
-
5937 resize_vector( uv, node_count, radial_subdivisions + 1 );
+
5916 if( radius.at(i)<0 ){
+
5917 helios_runtime_error("ERROR (Context::addTube): Radius of tube must be positive.");
+
5918 }
+
5919
+
5920 if(i==0){
+
5921 vec.x=nodes[i+1].x-nodes[i].x;
+
5922 vec.y=nodes[i+1].y-nodes[i].y;
+
5923 vec.z=nodes[i+1].z-nodes[i].z;
+
5924 }else if(i==node_count-1){
+
5925 vec.x=nodes[i].x-nodes[i-1].x;
+
5926 vec.y=nodes[i].y-nodes[i-1].y;
+
5927 vec.z=nodes[i].z-nodes[i-1].z;
+
5928 }else{
+
5929 vec.x=0.5f*( (nodes[i].x-nodes[i-1].x)+(nodes[i+1].x-nodes[i].x) );
+
5930 vec.y=0.5f*( (nodes[i].y-nodes[i-1].y)+(nodes[i+1].y-nodes[i].y) );
+
5931 vec.z=0.5f*( (nodes[i].z-nodes[i-1].z)+(nodes[i+1].z-nodes[i].z) );
+
5932 }
+
5933
+
5934 convec = cross(nvec,vec);
+
5935 convec.normalize();
+
5936 nvec = cross(vec,convec);
+
5937 nvec.normalize();
5938
-
5939 vec3 nvec(0.1817f,0.6198f,0.7634f);//random vector to get things going
+
5939 for(int j=0; j < radial_subdivisions + 1; j++ ){
5940
-
5941 for(int j=0; j < radial_subdivisions + 1; j++ ){
-
5942 cfact[j]=cosf(2.f*float(M_PI)*float(j)/float(radial_subdivisions));
-
5943 sfact[j]=sinf(2.f*float(M_PI)*float(j)/float(radial_subdivisions));
-
5944 }
+
5941 vec3 normal;
+
5942 normal.x=cfact[j]*radius[i]*nvec.x+sfact[j]*radius[i]*convec.x;
+
5943 normal.y=cfact[j]*radius[i]*nvec.y+sfact[j]*radius[i]*convec.y;
+
5944 normal.z=cfact[j]*radius[i]*nvec.z+sfact[j]*radius[i]*convec.z;
5945
-
5946 for( int i=0; i<node_count; i++ ){ //looping over tube segments
-
5947
-
5948 if( radius.at(i)<0 ){
-
5949 helios_runtime_error("ERROR (Context::addTube): Radius of tube must be positive.");
+
5946 xyz[j][i].x=nodes[i].x+normal.x;
+
5947 xyz[j][i].y=nodes[i].y+normal.y;
+
5948 xyz[j][i].z=nodes[i].z+normal.z;
+
5949
5950 }
5951
-
5952 if(i==0){
-
5953 vec.x=nodes[i+1].x-nodes[i].x;
-
5954 vec.y=nodes[i+1].y-nodes[i].y;
-
5955 vec.z=nodes[i+1].z-nodes[i].z;
-
5956 }else if(i==node_count-1){
-
5957 vec.x=nodes[i].x-nodes[i-1].x;
-
5958 vec.y=nodes[i].y-nodes[i-1].y;
-
5959 vec.z=nodes[i].z-nodes[i-1].z;
-
5960 }else{
-
5961 vec.x=0.5f*( (nodes[i].x-nodes[i-1].x)+(nodes[i+1].x-nodes[i].x) );
-
5962 vec.y=0.5f*( (nodes[i].y-nodes[i-1].y)+(nodes[i+1].y-nodes[i].y) );
-
5963 vec.z=0.5f*( (nodes[i].z-nodes[i-1].z)+(nodes[i+1].z-nodes[i].z) );
-
5964 }
-
5965
-
5966 convec = cross(nvec,vec);
-
5967 convec.normalize();
-
5968 nvec = cross(vec,convec);
-
5969 nvec.normalize();
+
5952 }
+
5953
+
5954 vec3 v0, v1, v2;
+
5955 std::vector<uint> UUIDs(2 * (node_count-1) * radial_subdivisions );
+
5956
+
5957 int ii=0;
+
5958 for( int i=0; i<node_count-1; i++ ){
+
5959 for(int j=0; j < radial_subdivisions; j++ ){
+
5960
+
5961 v0 = xyz[j][i];
+
5962 v1 = xyz[j+1][i+1];
+
5963 v2 = xyz[j+1][i];
+
5964
+
5965 UUIDs.at(ii) = addTriangle( v0, v1, v2, color.at(i) );
+
5966
+
5967 v0 = xyz[j][i];
+
5968 v1 = xyz[j][i+1];
+
5969 v2 = xyz[j+1][i+1];
5970
-
5971 for(int j=0; j < radial_subdivisions + 1; j++ ){
-
5972 normal[j][i].x=cfact[j]*radius[i]*nvec.x+sfact[j]*radius[i]*convec.x;
-
5973 normal[j][i].y=cfact[j]*radius[i]*nvec.y+sfact[j]*radius[i]*convec.y;
-
5974 normal[j][i].z=cfact[j]*radius[i]*nvec.z+sfact[j]*radius[i]*convec.z;
-
5975
-
5976 xyz[j][i].x=nodes[i].x+normal[j][i].x;
-
5977 xyz[j][i].y=nodes[i].y+normal[j][i].y;
-
5978 xyz[j][i].z=nodes[i].z+normal[j][i].z;
-
5979
-
5980 uv[j][i].x = float(i)/float(node_count-1);
-
5981 uv[j][i].y = float(j)/float(radial_subdivisions);
+
5971 UUIDs.at(ii+1) = addTriangle( v0, v1, v2, color.at(i) );
+
5972
+
5973 ii+=2;
+
5974 }
+
5975 }
+
5976
+
5977 return UUIDs;
+
5978
+
5979}
+
+
5980
+
+
5981std::vector<uint> Context::addTube(uint radial_subdivisions, const std::vector<vec3> &nodes, const std::vector<float> &radius, const char* texturefile ){
5982
-
5983 normal[j][i] = normal[j][i]/radius[i];
-
5984 }
-
5985
-
5986 }
-
5987
-
5988 vec3 v0, v1, v2;
-
5989 vec2 uv0, uv1, uv2;
-
5990 std::vector<uint> UUIDs(2 * (node_count-1) * radial_subdivisions );
-
5991
-
5992 int ii=0;
-
5993 for( int i=0; i<node_count-1; i++ ){
-
5994 for(int j=0; j < radial_subdivisions; j++ ){
-
5995
-
5996 v0 = xyz[j][i];
-
5997 v1 = xyz[j+1][i+1];
-
5998 v2 = xyz[j+1][i];
-
5999
-
6000 uv0 = uv[j][i];
-
6001 uv1 = uv[j+1][i+1];
-
6002 uv2 = uv[j+1][i];
-
6003
-
6004 UUIDs.at(ii) = addTriangle( v0, v1, v2, texturefile, uv0, uv1, uv2 );
+
5983 if( !validateTextureFileExtenstion(texturefile) ) {
+
5984 helios_runtime_error("ERROR (Context::addTube): Texture file " + std::string(texturefile) + " is not PNG or JPEG format.");
+
5985 }else if( !doesTextureFileExist(texturefile) ) {
+
5986 helios_runtime_error("ERROR (Context::addTube): Texture file " + std::string(texturefile) + " does not exist.");
+
5987 }
+
5988
+
5989 const uint node_count = nodes.size();
+
5990
+
5991 if( node_count==0 ){
+
5992 helios_runtime_error("ERROR (Context::addTube): Node and radius arrays are empty.");
+
5993 }else if( node_count!=radius.size() ){
+
5994 helios_runtime_error("ERROR (Context::addTube): Size of `nodes' and `radius' arguments must agree.");
+
5995 }
+
5996
+
5997 vec3 vec, convec;
+
5998 std::vector<float> cfact(radial_subdivisions + 1);
+
5999 std::vector<float> sfact(radial_subdivisions + 1);
+
6000 std::vector<std::vector<vec3> > xyz, normal;
+
6001 std::vector<std::vector<vec2> > uv;
+
6002 resize_vector( xyz, node_count, radial_subdivisions + 1 );
+
6003 resize_vector( normal, node_count, radial_subdivisions + 1 );
+
6004 resize_vector( uv, node_count, radial_subdivisions + 1 );
6005
-
6006 v0 = xyz[j][i];
-
6007 v1 = xyz[j][i+1];
-
6008 v2 = xyz[j+1][i+1];
-
6009
-
6010 uv0 = uv[j][i];
-
6011 uv1 = uv[j][i+1];
-
6012 uv2 = uv[j+1][i+1];
-
6013
-
6014 UUIDs.at(ii+1) = addTriangle( v0, v1, v2, texturefile, uv0, uv1, uv2 );
-
6015
-
6016 ii+=2;
+
6006 vec3 nvec(0.1817f,0.6198f,0.7634f);//random vector to get things going
+
6007
+
6008 for(int j=0; j < radial_subdivisions + 1; j++ ){
+
6009 cfact[j]=cosf(2.f*float(M_PI)*float(j)/float(radial_subdivisions));
+
6010 sfact[j]=sinf(2.f*float(M_PI)*float(j)/float(radial_subdivisions));
+
6011 }
+
6012
+
6013 for( int i=0; i<node_count; i++ ){ //looping over tube segments
+
6014
+
6015 if( radius.at(i)<0 ){
+
6016 helios_runtime_error("ERROR (Context::addTube): Radius of tube must be positive.");
6017 }
-
6018 }
-
6019
-
6020 return UUIDs;
-
6021
-
6022}
-
-
6023
-
-
6024std::vector<uint> Context::addBox(const vec3 &center, const vec3 &size, const int3 &subdiv ){
-
6025
-
6026 RGBcolor color = make_RGBcolor(0.f,0.75f,0.f); //Default color is green
-
6027
-
6028 return addBox(center,size,subdiv,color,false);
-
6029}
-
-
6030
-
-
6031std::vector<uint> Context::addBox(const vec3 &center, const vec3 &size, const int3 &subdiv, const RGBcolor &color ){
-
6032 return addBox(center,size,subdiv,color,false);
-
6033}
-
-
6034
-
-
6035std::vector<uint> Context::addBox(const vec3 &center, const vec3 &size, const int3 &subdiv, const char* texturefile ){
-
6036 return addBox(center,size,subdiv,texturefile,false);
-
6037}
-
-
6038
-
-
6039std::vector<uint> Context::addBox(const vec3 &center, const vec3 &size, const int3 &subdiv, const RGBcolor &color, bool reverse_normals ){
-
6040
-
6041 std::vector<uint> UUID;
+
6018
+
6019 if(i==0){
+
6020 vec.x=nodes[i+1].x-nodes[i].x;
+
6021 vec.y=nodes[i+1].y-nodes[i].y;
+
6022 vec.z=nodes[i+1].z-nodes[i].z;
+
6023 }else if(i==node_count-1){
+
6024 vec.x=nodes[i].x-nodes[i-1].x;
+
6025 vec.y=nodes[i].y-nodes[i-1].y;
+
6026 vec.z=nodes[i].z-nodes[i-1].z;
+
6027 }else{
+
6028 vec.x=0.5f*( (nodes[i].x-nodes[i-1].x)+(nodes[i+1].x-nodes[i].x) );
+
6029 vec.y=0.5f*( (nodes[i].y-nodes[i-1].y)+(nodes[i+1].y-nodes[i].y) );
+
6030 vec.z=0.5f*( (nodes[i].z-nodes[i-1].z)+(nodes[i+1].z-nodes[i].z) );
+
6031 }
+
6032
+
6033 convec = cross(nvec,vec);
+
6034 convec.normalize();
+
6035 nvec = cross(vec,convec);
+
6036 nvec.normalize();
+
6037
+
6038 for(int j=0; j < radial_subdivisions + 1; j++ ){
+
6039 normal[j][i].x=cfact[j]*radius[i]*nvec.x+sfact[j]*radius[i]*convec.x;
+
6040 normal[j][i].y=cfact[j]*radius[i]*nvec.y+sfact[j]*radius[i]*convec.y;
+
6041 normal[j][i].z=cfact[j]*radius[i]*nvec.z+sfact[j]*radius[i]*convec.z;
6042
-
6043 vec3 subsize;
-
6044 subsize.x = size.x/float(subdiv.x);
-
6045 subsize.y = size.y/float(subdiv.y);
-
6046 subsize.z = size.z/float(subdiv.z);
-
6047
-
6048 vec3 subcenter;
-
6049 std::vector<uint> U;
-
6050
-
6051 if( reverse_normals ){ //normals point inward
+
6043 xyz[j][i].x=nodes[i].x+normal[j][i].x;
+
6044 xyz[j][i].y=nodes[i].y+normal[j][i].y;
+
6045 xyz[j][i].z=nodes[i].z+normal[j][i].z;
+
6046
+
6047 uv[j][i].x = float(i)/float(node_count-1);
+
6048 uv[j][i].y = float(j)/float(radial_subdivisions);
+
6049
+
6050 normal[j][i] = normal[j][i]/radius[i];
+
6051 }
6052
-
6053 // x-z faces (vertical)
+
6053 }
6054
-
6055 //right
-
6056 subcenter = center + make_vec3(0,0.5f*size.y,0);
-
6057 U = addTile( subcenter, make_vec2(size.x,size.z), make_SphericalCoord(0.5*M_PI,M_PI), make_int2(subdiv.x,subdiv.z), color );
-
6058 UUID.insert( UUID.end(), U.begin(), U.end() );
-
6059
-
6060 //left
-
6061 subcenter = center - make_vec3(0,0.5f*size.y,0);
-
6062 U = addTile( subcenter, make_vec2(size.x,size.z), make_SphericalCoord(0.5*M_PI,0), make_int2(subdiv.x,subdiv.z), color );
-
6063 UUID.insert( UUID.end(), U.begin(), U.end() );
-
6064
-
6065 // y-z faces (vertical)
+
6055 vec3 v0, v1, v2;
+
6056 vec2 uv0, uv1, uv2;
+
6057 std::vector<uint> UUIDs(2 * (node_count-1) * radial_subdivisions );
+
6058
+
6059 int ii=0;
+
6060 for( int i=0; i<node_count-1; i++ ){
+
6061 for(int j=0; j < radial_subdivisions; j++ ){
+
6062
+
6063 v0 = xyz[j][i];
+
6064 v1 = xyz[j+1][i+1];
+
6065 v2 = xyz[j+1][i];
6066
-
6067 //front
-
6068 subcenter = center + make_vec3(0.5f*size.x,0,0);
-
6069 U = addTile( subcenter, make_vec2(size.y,size.z), make_SphericalCoord(0.5*M_PI,1.5*M_PI), make_int2(subdiv.y,subdiv.z), color );
-
6070 UUID.insert( UUID.end(), U.begin(), U.end() );
-
6071
-
6072 //back
-
6073 subcenter = center - make_vec3(0.5f*size.x,0,0);
-
6074 U = addTile( subcenter, make_vec2(size.y,size.z), make_SphericalCoord(0.5*M_PI,0.5*M_PI), make_int2(subdiv.y,subdiv.z), color );
-
6075 UUID.insert( UUID.end(), U.begin(), U.end() );
+
6067 uv0 = uv[j][i];
+
6068 uv1 = uv[j+1][i+1];
+
6069 uv2 = uv[j+1][i];
+
6070
+
6071 UUIDs.at(ii) = addTriangle( v0, v1, v2, texturefile, uv0, uv1, uv2 );
+
6072
+
6073 v0 = xyz[j][i];
+
6074 v1 = xyz[j][i+1];
+
6075 v2 = xyz[j+1][i+1];
6076
-
6077 // x-y faces (horizontal)
-
6078
-
6079 //top
-
6080 subcenter = center + make_vec3(0,0,0.5f*size.z);
-
6081 U = addTile( subcenter, make_vec2(size.x,size.y), make_SphericalCoord(M_PI,0), make_int2(subdiv.x,subdiv.y), color );
-
6082 UUID.insert( UUID.end(), U.begin(), U.end() );
-
6083
-
6084 //bottom
-
6085 subcenter = center - make_vec3(0,0,0.5f*size.z);
-
6086 U = addTile( subcenter, make_vec2(size.x,size.y), make_SphericalCoord(0,0), make_int2(subdiv.x,subdiv.y), color );
-
6087 UUID.insert( UUID.end(), U.begin(), U.end() );
+
6077 uv0 = uv[j][i];
+
6078 uv1 = uv[j][i+1];
+
6079 uv2 = uv[j+1][i+1];
+
6080
+
6081 UUIDs.at(ii+1) = addTriangle( v0, v1, v2, texturefile, uv0, uv1, uv2 );
+
6082
+
6083 ii+=2;
+
6084 }
+
6085 }
+
6086
+
6087 return UUIDs;
6088
-
6089 }else{ //normals point outward
+
6089}
+
6090
-
6091 // x-z faces (vertical)
+
+
6091std::vector<uint> Context::addBox(const vec3 &center, const vec3 &size, const int3 &subdiv ){
6092
-
6093 //right
-
6094 subcenter = center + make_vec3(0,0.5f*size.y,0);
-
6095 U = addTile( subcenter, make_vec2(size.x,size.z), make_SphericalCoord(0.5*M_PI,0), make_int2(subdiv.x,subdiv.z), color );
-
6096 UUID.insert( UUID.end(), U.begin(), U.end() );
+
6093 RGBcolor color = make_RGBcolor(0.f,0.75f,0.f); //Default color is green
+
6094
+
6095 return addBox(center,size,subdiv,color,false);
+
6096}
+
6097
-
6098 //left
-
6099 subcenter = center - make_vec3(0,0.5f*size.y,0);
-
6100 U = addTile( subcenter, make_vec2(size.x,size.z), make_SphericalCoord(0.5*M_PI,M_PI), make_int2(subdiv.x,subdiv.z), color );
-
6101 UUID.insert( UUID.end(), U.begin(), U.end() );
-
6102
-
6103 // y-z faces (vertical)
-
6104
-
6105 //front
-
6106 subcenter = center + make_vec3(0.5f*size.x,0,0);
-
6107 U = addTile( subcenter, make_vec2(size.y,size.z), make_SphericalCoord(0.5*M_PI,0.5*M_PI), make_int2(subdiv.y,subdiv.z), color );
-
6108 UUID.insert( UUID.end(), U.begin(), U.end() );
+
+
6098std::vector<uint> Context::addBox(const vec3 &center, const vec3 &size, const int3 &subdiv, const RGBcolor &color ){
+
6099 return addBox(center,size,subdiv,color,false);
+
6100}
+
+
6101
+
+
6102std::vector<uint> Context::addBox(const vec3 &center, const vec3 &size, const int3 &subdiv, const char* texturefile ){
+
6103 return addBox(center,size,subdiv,texturefile,false);
+
6104}
+
+
6105
+
+
6106std::vector<uint> Context::addBox(const vec3 &center, const vec3 &size, const int3 &subdiv, const RGBcolor &color, bool reverse_normals ){
+
6107
+
6108 std::vector<uint> UUID;
6109
-
6110 //back
-
6111 subcenter = center - make_vec3(0.5f*size.x,0,0);
-
6112 U = addTile( subcenter, make_vec2(size.y,size.z), make_SphericalCoord(0.5*M_PI,1.5*M_PI), make_int2(subdiv.y,subdiv.z), color );
-
6113 UUID.insert( UUID.end(), U.begin(), U.end() );
+
6110 vec3 subsize;
+
6111 subsize.x = size.x/float(subdiv.x);
+
6112 subsize.y = size.y/float(subdiv.y);
+
6113 subsize.z = size.z/float(subdiv.z);
6114
-
6115 // x-y faces (horizontal)
-
6116
-
6117 //top
-
6118 subcenter = center + make_vec3(0,0,0.5f*size.z);
-
6119 U = addTile( subcenter, make_vec2(size.x,size.y), make_SphericalCoord(0,0), make_int2(subdiv.x,subdiv.y), color );
-
6120 UUID.insert( UUID.end(), U.begin(), U.end() );
+
6115 vec3 subcenter;
+
6116 std::vector<uint> U;
+
6117
+
6118 if( reverse_normals ){ //normals point inward
+
6119
+
6120 // x-z faces (vertical)
6121
-
6122 //bottom
-
6123 subcenter = center - make_vec3(0,0,0.5f*size.z);
-
6124 U = addTile( subcenter, make_vec2(size.x,size.y), make_SphericalCoord(M_PI,0), make_int2(subdiv.x,subdiv.y), color );
+
6122 //right
+
6123 subcenter = center + make_vec3(0,0.5f*size.y,0);
+
6124 U = addTile( subcenter, make_vec2(size.x,size.z), make_SphericalCoord(0.5*M_PI,M_PI), make_int2(subdiv.x,subdiv.z), color );
6125 UUID.insert( UUID.end(), U.begin(), U.end() );
6126
-
6127 }
-
6128
-
6129 return UUID;
-
6130
-
6131}
-
-
6132
-
-
6133std::vector<uint> Context::addBox(const vec3 &center, const vec3 &size, const int3 &subdiv, const char* texturefile, bool reverse_normals ){
-
6134
-
6135 if( !validateTextureFileExtenstion(texturefile) ) {
-
6136 helios_runtime_error("ERROR (Context::addBox): Texture file " + std::string(texturefile) + " is not PNG or JPEG format.");
-
6137 }else if( !doesTextureFileExist(texturefile) ) {
-
6138 helios_runtime_error("ERROR (Context::addBox): Texture file " + std::string(texturefile) + " does not exist.");
-
6139 }
-
6140
-
6141 std::vector<uint> UUID;
-
6142
-
6143 vec3 subsize;
-
6144 subsize.x = size.x/float(subdiv.x);
-
6145 subsize.y = size.y/float(subdiv.y);
-
6146 subsize.z = size.z/float(subdiv.z);
-
6147
-
6148 vec3 subcenter;
-
6149 std::vector<uint> U;
+
6127 //left
+
6128 subcenter = center - make_vec3(0,0.5f*size.y,0);
+
6129 U = addTile( subcenter, make_vec2(size.x,size.z), make_SphericalCoord(0.5*M_PI,0), make_int2(subdiv.x,subdiv.z), color );
+
6130 UUID.insert( UUID.end(), U.begin(), U.end() );
+
6131
+
6132 // y-z faces (vertical)
+
6133
+
6134 //front
+
6135 subcenter = center + make_vec3(0.5f*size.x,0,0);
+
6136 U = addTile( subcenter, make_vec2(size.y,size.z), make_SphericalCoord(0.5*M_PI,1.5*M_PI), make_int2(subdiv.y,subdiv.z), color );
+
6137 UUID.insert( UUID.end(), U.begin(), U.end() );
+
6138
+
6139 //back
+
6140 subcenter = center - make_vec3(0.5f*size.x,0,0);
+
6141 U = addTile( subcenter, make_vec2(size.y,size.z), make_SphericalCoord(0.5*M_PI,0.5*M_PI), make_int2(subdiv.y,subdiv.z), color );
+
6142 UUID.insert( UUID.end(), U.begin(), U.end() );
+
6143
+
6144 // x-y faces (horizontal)
+
6145
+
6146 //top
+
6147 subcenter = center + make_vec3(0,0,0.5f*size.z);
+
6148 U = addTile( subcenter, make_vec2(size.x,size.y), make_SphericalCoord(M_PI,0), make_int2(subdiv.x,subdiv.y), color );
+
6149 UUID.insert( UUID.end(), U.begin(), U.end() );
6150
-
6151 if( reverse_normals ){ //normals point inward
-
6152
-
6153 // x-z faces (vertical)
-
6154
-
6155 //right
-
6156 subcenter = center + make_vec3(0,0.5f*size.y,0);
-
6157 U = addTile( subcenter, make_vec2(size.x,size.z), make_SphericalCoord(0.5*M_PI,M_PI), make_int2(subdiv.x,subdiv.z), texturefile );
-
6158 UUID.insert( UUID.end(), U.begin(), U.end() );
+
6151 //bottom
+
6152 subcenter = center - make_vec3(0,0,0.5f*size.z);
+
6153 U = addTile( subcenter, make_vec2(size.x,size.y), make_SphericalCoord(0,0), make_int2(subdiv.x,subdiv.y), color );
+
6154 UUID.insert( UUID.end(), U.begin(), U.end() );
+
6155
+
6156 }else{ //normals point outward
+
6157
+
6158 // x-z faces (vertical)
6159
-
6160 //left
-
6161 subcenter = center - make_vec3(0,0.5f*size.y,0);
-
6162 U = addTile( subcenter, make_vec2(size.x,size.z), make_SphericalCoord(0.5*M_PI,0), make_int2(subdiv.x,subdiv.z), texturefile );
+
6160 //right
+
6161 subcenter = center + make_vec3(0,0.5f*size.y,0);
+
6162 U = addTile( subcenter, make_vec2(size.x,size.z), make_SphericalCoord(0.5*M_PI,0), make_int2(subdiv.x,subdiv.z), color );
6163 UUID.insert( UUID.end(), U.begin(), U.end() );
6164
-
6165 // y-z faces (vertical)
-
6166
-
6167 //front
-
6168 subcenter = center + make_vec3(0.5f*size.x,0,0);
-
6169 U = addTile( subcenter, make_vec2(size.y,size.z), make_SphericalCoord(0.5*M_PI,1.5*M_PI), make_int2(subdiv.y,subdiv.z), texturefile );
-
6170 UUID.insert( UUID.end(), U.begin(), U.end() );
+
6165 //left
+
6166 subcenter = center - make_vec3(0,0.5f*size.y,0);
+
6167 U = addTile( subcenter, make_vec2(size.x,size.z), make_SphericalCoord(0.5*M_PI,M_PI), make_int2(subdiv.x,subdiv.z), color );
+
6168 UUID.insert( UUID.end(), U.begin(), U.end() );
+
6169
+
6170 // y-z faces (vertical)
6171
-
6172 //back
-
6173 subcenter = center - make_vec3(0.5f*size.x,0,0);
-
6174 U = addTile( subcenter, make_vec2(size.y,size.z), make_SphericalCoord(0.5*M_PI,0.5*M_PI), make_int2(subdiv.y,subdiv.z), texturefile );
+
6172 //front
+
6173 subcenter = center + make_vec3(0.5f*size.x,0,0);
+
6174 U = addTile( subcenter, make_vec2(size.y,size.z), make_SphericalCoord(0.5*M_PI,0.5*M_PI), make_int2(subdiv.y,subdiv.z), color );
6175 UUID.insert( UUID.end(), U.begin(), U.end() );
6176
-
6177 // x-y faces (horizontal)
-
6178
-
6179 //top
-
6180 subcenter = center + make_vec3(0,0,0.5f*size.z);
-
6181 U = addTile( subcenter, make_vec2(size.x,size.y), make_SphericalCoord(M_PI,0), make_int2(subdiv.x,subdiv.y), texturefile );
-
6182 UUID.insert( UUID.end(), U.begin(), U.end() );
+
6177 //back
+
6178 subcenter = center - make_vec3(0.5f*size.x,0,0);
+
6179 U = addTile( subcenter, make_vec2(size.y,size.z), make_SphericalCoord(0.5*M_PI,1.5*M_PI), make_int2(subdiv.y,subdiv.z), color );
+
6180 UUID.insert( UUID.end(), U.begin(), U.end() );
+
6181
+
6182 // x-y faces (horizontal)
6183
-
6184 //bottom
-
6185 subcenter = center - make_vec3(0,0,0.5f*size.z);
-
6186 U = addTile( subcenter, make_vec2(size.x,size.y), make_SphericalCoord(0,0), make_int2(subdiv.x,subdiv.y), texturefile );
+
6184 //top
+
6185 subcenter = center + make_vec3(0,0,0.5f*size.z);
+
6186 U = addTile( subcenter, make_vec2(size.x,size.y), make_SphericalCoord(0,0), make_int2(subdiv.x,subdiv.y), color );
6187 UUID.insert( UUID.end(), U.begin(), U.end() );
6188
-
6189 }else{ //normals point outward
-
6190
-
6191 // x-z faces (vertical)
-
6192
-
6193 //right
-
6194 subcenter = center + make_vec3(0,0.5f*size.y,0);
-
6195 U = addTile( subcenter, make_vec2(size.x,size.z), make_SphericalCoord(0.5*M_PI,0), make_int2(subdiv.x,subdiv.z), texturefile );
-
6196 UUID.insert( UUID.end(), U.begin(), U.end() );
+
6189 //bottom
+
6190 subcenter = center - make_vec3(0,0,0.5f*size.z);
+
6191 U = addTile( subcenter, make_vec2(size.x,size.y), make_SphericalCoord(M_PI,0), make_int2(subdiv.x,subdiv.y), color );
+
6192 UUID.insert( UUID.end(), U.begin(), U.end() );
+
6193
+
6194 }
+
6195
+
6196 return UUID;
6197
-
6198 //left
-
6199 subcenter = center - make_vec3(0,0.5f*size.y,0);
-
6200 U = addTile( subcenter, make_vec2(size.x,size.z), make_SphericalCoord(0.5*M_PI,M_PI), make_int2(subdiv.x,subdiv.z), texturefile );
-
6201 UUID.insert( UUID.end(), U.begin(), U.end() );
-
6202
-
6203 // y-z faces (vertical)
-
6204
-
6205 //front
-
6206 subcenter = center + make_vec3(0.5f*size.x,0,0);
-
6207 U = addTile( subcenter, make_vec2(size.y,size.z), make_SphericalCoord(0.5*M_PI,0.5*M_PI), make_int2(subdiv.y,subdiv.z), texturefile );
-
6208 UUID.insert( UUID.end(), U.begin(), U.end() );
+
6198}
+
+
6199
+
+
6200std::vector<uint> Context::addBox(const vec3 &center, const vec3 &size, const int3 &subdiv, const char* texturefile, bool reverse_normals ){
+
6201
+
6202 if( !validateTextureFileExtenstion(texturefile) ) {
+
6203 helios_runtime_error("ERROR (Context::addBox): Texture file " + std::string(texturefile) + " is not PNG or JPEG format.");
+
6204 }else if( !doesTextureFileExist(texturefile) ) {
+
6205 helios_runtime_error("ERROR (Context::addBox): Texture file " + std::string(texturefile) + " does not exist.");
+
6206 }
+
6207
+
6208 std::vector<uint> UUID;
6209
-
6210 //back
-
6211 subcenter = center - make_vec3(0.5f*size.x,0,0);
-
6212 U = addTile( subcenter, make_vec2(size.y,size.z), make_SphericalCoord(0.5*M_PI,1.5*M_PI), make_int2(subdiv.y,subdiv.z), texturefile );
-
6213 UUID.insert( UUID.end(), U.begin(), U.end() );
+
6210 vec3 subsize;
+
6211 subsize.x = size.x/float(subdiv.x);
+
6212 subsize.y = size.y/float(subdiv.y);
+
6213 subsize.z = size.z/float(subdiv.z);
6214
-
6215 // x-y faces (horizontal)
-
6216
-
6217 //top
-
6218 subcenter = center + make_vec3(0,0,0.5f*size.z);
-
6219 U = addTile( subcenter, make_vec2(size.x,size.y), make_SphericalCoord(0,0), make_int2(subdiv.x,subdiv.y), texturefile );
-
6220 UUID.insert( UUID.end(), U.begin(), U.end() );
+
6215 vec3 subcenter;
+
6216 std::vector<uint> U;
+
6217
+
6218 if( reverse_normals ){ //normals point inward
+
6219
+
6220 // x-z faces (vertical)
6221
-
6222 //bottom
-
6223 subcenter = center - make_vec3(0,0,0.5f*size.z);
-
6224 U = addTile( subcenter, make_vec2(size.x,size.y), make_SphericalCoord(M_PI,0), make_int2(subdiv.x,subdiv.y), texturefile );
+
6222 //right
+
6223 subcenter = center + make_vec3(0,0.5f*size.y,0);
+
6224 U = addTile( subcenter, make_vec2(size.x,size.z), make_SphericalCoord(0.5*M_PI,M_PI), make_int2(subdiv.x,subdiv.z), texturefile );
6225 UUID.insert( UUID.end(), U.begin(), U.end() );
6226
-
6227 }
-
6228
-
6229 return UUID;
-
6230
-
6231}
-
-
6232
-
-
6233std::vector<uint> Context::addDisk(uint Ndivs, const vec3 &center, const vec2 &size ){
-
6234 return addDisk(make_int2(Ndivs,1),center,size,make_SphericalCoord(0,0),make_RGBAcolor(1,0,0,1));
-
6235}
-
-
6236
-
-
6237std::vector<uint> Context::addDisk(uint Ndivs, const vec3 &center, const vec2 &size, const SphericalCoord &rotation ){
-
6238 return addDisk(make_int2(Ndivs,1),center,size,rotation,make_RGBAcolor(1,0,0,1));
-
6239}
-
-
6240
-
-
6241std::vector<uint> Context::addDisk(uint Ndivs, const vec3 &center, const vec2 &size, const SphericalCoord &rotation, const RGBcolor &color ){
-
6242 return addDisk(make_int2(Ndivs,1),center,size,rotation,make_RGBAcolor(color,1));
-
6243}
-
-
6244
-
-
6245std::vector<uint> Context::addDisk(uint Ndivs, const vec3 &center, const vec2 &size, const SphericalCoord &rotation, const RGBAcolor &color ){
-
6246 return addDisk(make_int2(Ndivs,1),center,size,rotation,color);
-
6247}
-
-
6248
-
-
6249std::vector<uint> Context::addDisk(uint Ndivs, const vec3 &center, const vec2 &size, const SphericalCoord &rotation, const char* texture_file ){
-
6250 return addDisk(make_int2(Ndivs,1),center,size,rotation,texture_file);
-
6251}
-
-
6252
-
-
6253std::vector<uint> Context::addDisk(const int2 &Ndivs, const vec3 &center, const vec2 &size, const SphericalCoord &rotation, const RGBcolor &color ){
-
6254 return addDisk(Ndivs,center,size,rotation,make_RGBAcolor(color,1));
-
6255}
-
-
6256
-
-
6257std::vector<uint> Context::addDisk(const int2 &Ndivs, const vec3 &center, const vec2 &size, const SphericalCoord &rotation, const RGBAcolor &color ){
-
6258
-
6259 std::vector<uint> UUID;
-
6260 UUID.resize(Ndivs.x+Ndivs.x*(Ndivs.y-1)*2);
-
6261 int i=0;
-
6262 for( int r=0; r < Ndivs.y; r++ ) {
-
6263 for (int t = 0; t < Ndivs.x; t++) {
+
6227 //left
+
6228 subcenter = center - make_vec3(0,0.5f*size.y,0);
+
6229 U = addTile( subcenter, make_vec2(size.x,size.z), make_SphericalCoord(0.5*M_PI,0), make_int2(subdiv.x,subdiv.z), texturefile );
+
6230 UUID.insert( UUID.end(), U.begin(), U.end() );
+
6231
+
6232 // y-z faces (vertical)
+
6233
+
6234 //front
+
6235 subcenter = center + make_vec3(0.5f*size.x,0,0);
+
6236 U = addTile( subcenter, make_vec2(size.y,size.z), make_SphericalCoord(0.5*M_PI,1.5*M_PI), make_int2(subdiv.y,subdiv.z), texturefile );
+
6237 UUID.insert( UUID.end(), U.begin(), U.end() );
+
6238
+
6239 //back
+
6240 subcenter = center - make_vec3(0.5f*size.x,0,0);
+
6241 U = addTile( subcenter, make_vec2(size.y,size.z), make_SphericalCoord(0.5*M_PI,0.5*M_PI), make_int2(subdiv.y,subdiv.z), texturefile );
+
6242 UUID.insert( UUID.end(), U.begin(), U.end() );
+
6243
+
6244 // x-y faces (horizontal)
+
6245
+
6246 //top
+
6247 subcenter = center + make_vec3(0,0,0.5f*size.z);
+
6248 U = addTile( subcenter, make_vec2(size.x,size.y), make_SphericalCoord(M_PI,0), make_int2(subdiv.x,subdiv.y), texturefile );
+
6249 UUID.insert( UUID.end(), U.begin(), U.end() );
+
6250
+
6251 //bottom
+
6252 subcenter = center - make_vec3(0,0,0.5f*size.z);
+
6253 U = addTile( subcenter, make_vec2(size.x,size.y), make_SphericalCoord(0,0), make_int2(subdiv.x,subdiv.y), texturefile );
+
6254 UUID.insert( UUID.end(), U.begin(), U.end() );
+
6255
+
6256 }else{ //normals point outward
+
6257
+
6258 // x-z faces (vertical)
+
6259
+
6260 //right
+
6261 subcenter = center + make_vec3(0,0.5f*size.y,0);
+
6262 U = addTile( subcenter, make_vec2(size.x,size.z), make_SphericalCoord(0.5*M_PI,0), make_int2(subdiv.x,subdiv.z), texturefile );
+
6263 UUID.insert( UUID.end(), U.begin(), U.end() );
6264
-
6265 float dtheta = 2.f * float(M_PI) / float(Ndivs.x);
-
6266 float theta = dtheta*float(t);
-
6267 float theta_plus = dtheta*float(t+1);
-
6268
-
6269 float rx = size.x/float(Ndivs.y)*float(r);
-
6270 float ry = size.y/float(Ndivs.y)*float(r);
+
6265 //left
+
6266 subcenter = center - make_vec3(0,0.5f*size.y,0);
+
6267 U = addTile( subcenter, make_vec2(size.x,size.z), make_SphericalCoord(0.5*M_PI,M_PI), make_int2(subdiv.x,subdiv.z), texturefile );
+
6268 UUID.insert( UUID.end(), U.begin(), U.end() );
+
6269
+
6270 // y-z faces (vertical)
6271
-
6272 float rx_plus = size.x/float(Ndivs.y)*float(r+1);
-
6273 float ry_plus = size.y/float(Ndivs.y)*float(r+1);
-
6274
-
6275 if( r==0 ) {
-
6276 UUID.at(i) = addTriangle(make_vec3(0, 0, 0), make_vec3(rx_plus * cosf(theta), ry_plus * sinf(theta), 0),make_vec3(rx_plus * cosf(theta_plus), ry_plus * sinf(theta_plus), 0), color);
-
6277 }else{
-
6278 UUID.at(i) = addTriangle(make_vec3(rx * cosf(theta_plus), ry * sinf(theta_plus), 0), make_vec3(rx * cosf(theta), ry * sinf(theta), 0),make_vec3(rx_plus * cosf(theta), ry_plus * sinf(theta), 0), color);
-
6279 i++;
-
6280 UUID.at(i) = addTriangle(make_vec3(rx * cosf(theta_plus), ry * sinf(theta_plus), 0), make_vec3(rx_plus * cosf(theta), ry_plus * sinf(theta), 0),make_vec3(rx_plus * cosf(theta_plus), ry_plus * sinf(theta_plus), 0), color);
-
6281 }
-
6282 getPrimitivePointer_private(UUID.at(i))->rotate(rotation.elevation, "y");
-
6283 getPrimitivePointer_private(UUID.at(i))->rotate(rotation.azimuth, "z");
-
6284 getPrimitivePointer_private(UUID.at(i))->translate(center);
-
6285
-
6286 i++;
-
6287 }
-
6288 }
-
6289
-
6290 return UUID;
-
6291
-
6292}
-
+
6272 //front
+
6273 subcenter = center + make_vec3(0.5f*size.x,0,0);
+
6274 U = addTile( subcenter, make_vec2(size.y,size.z), make_SphericalCoord(0.5*M_PI,0.5*M_PI), make_int2(subdiv.y,subdiv.z), texturefile );
+
6275 UUID.insert( UUID.end(), U.begin(), U.end() );
+
6276
+
6277 //back
+
6278 subcenter = center - make_vec3(0.5f*size.x,0,0);
+
6279 U = addTile( subcenter, make_vec2(size.y,size.z), make_SphericalCoord(0.5*M_PI,1.5*M_PI), make_int2(subdiv.y,subdiv.z), texturefile );
+
6280 UUID.insert( UUID.end(), U.begin(), U.end() );
+
6281
+
6282 // x-y faces (horizontal)
+
6283
+
6284 //top
+
6285 subcenter = center + make_vec3(0,0,0.5f*size.z);
+
6286 U = addTile( subcenter, make_vec2(size.x,size.y), make_SphericalCoord(0,0), make_int2(subdiv.x,subdiv.y), texturefile );
+
6287 UUID.insert( UUID.end(), U.begin(), U.end() );
+
6288
+
6289 //bottom
+
6290 subcenter = center - make_vec3(0,0,0.5f*size.z);
+
6291 U = addTile( subcenter, make_vec2(size.x,size.y), make_SphericalCoord(M_PI,0), make_int2(subdiv.x,subdiv.y), texturefile );
+
6292 UUID.insert( UUID.end(), U.begin(), U.end() );
6293
-
-
6294std::vector<uint> Context::addDisk(const int2 &Ndivs, const vec3 &center, const vec2 &size, const SphericalCoord &rotation, const char* texturefile ){
+
6294 }
6295
-
6296 if( !validateTextureFileExtenstion(texturefile) ) {
-
6297 helios_runtime_error("ERROR (Context::addDisk): Texture file " + std::string(texturefile) + " is not PNG or JPEG format.");
-
6298 }else if( !doesTextureFileExist(texturefile) ) {
-
6299 helios_runtime_error("ERROR (Context::addDisk): Texture file " + std::string(texturefile) + " does not exist.");
-
6300 }
-
6301
-
6302 std::vector<uint> UUID;
-
6303 UUID.resize(Ndivs.x+Ndivs.x*(Ndivs.y-1)*2);
-
6304 int i=0;
-
6305 for( int r=0; r < Ndivs.y; r++ ) {
-
6306 for (int t = 0; t < Ndivs.x; t++) {
+
6296 return UUID;
+
6297
+
6298}
+
+
6299
+
+
6300std::vector<uint> Context::addDisk(uint Ndivs, const vec3 &center, const vec2 &size ){
+
6301 return addDisk(make_int2(Ndivs,1),center,size,make_SphericalCoord(0,0),make_RGBAcolor(1,0,0,1));
+
6302}
+
+
6303
+
+
6304std::vector<uint> Context::addDisk(uint Ndivs, const vec3 &center, const vec2 &size, const SphericalCoord &rotation ){
+
6305 return addDisk(make_int2(Ndivs,1),center,size,rotation,make_RGBAcolor(1,0,0,1));
+
6306}
+
6307
-
6308 float dtheta = 2.f * float(M_PI) / float(Ndivs.x);
-
6309 float theta = dtheta*float(t);
-
6310 float theta_plus = dtheta*float(t+1);
+
+
6308std::vector<uint> Context::addDisk(uint Ndivs, const vec3 &center, const vec2 &size, const SphericalCoord &rotation, const RGBcolor &color ){
+
6309 return addDisk(make_int2(Ndivs,1),center,size,rotation,make_RGBAcolor(color,1));
+
6310}
+
6311
-
6312 float rx = size.x/float(Ndivs.y)*float(r);
-
6313 float ry = size.y/float(Ndivs.y)*float(r);
-
6314 float rx_plus = size.x/float(Ndivs.y)*float(r+1);
-
6315 float ry_plus = size.y/float(Ndivs.y)*float(r+1);
-
6316
-
6317 if( r==0 ) {
-
6318 UUID.at(i) = addTriangle(make_vec3(0, 0, 0), make_vec3(rx_plus * cosf(theta), ry_plus * sinf(theta), 0), make_vec3(rx_plus * cosf(theta_plus), ry_plus * sinf(theta_plus), 0), texturefile, make_vec2(0.5, 0.5), make_vec2(0.5f * (1.f + cosf(theta) * rx_plus / size.x), 0.5f * (1.f + sinf(theta) * ry_plus / size.y)), make_vec2(0.5f * (1.f + cosf(theta_plus) * rx_plus / size.x), 0.5f * (1.f + sinf(theta_plus) * ry_plus / size.y)));
-
6319 }else{
-
6320 UUID.at(i) = addTriangle(make_vec3(rx * cosf(theta_plus), ry * sinf(theta_plus), 0), make_vec3(rx * cosf(theta), ry * sinf(theta), 0), make_vec3(rx_plus * cosf(theta), ry_plus * sinf(theta), 0), texturefile, make_vec2(0.5f * (1.f + cosf(theta_plus) * rx / size.x), 0.5f * (1.f + sinf(theta_plus) * ry / size.y)), make_vec2(0.5f * (1.f + cosf(theta) * rx / size.x), 0.5f * (1.f + sinf(theta) * ry / size.y)), make_vec2(0.5f * (1.f + cosf(theta) * rx_plus / size.x), 0.5f * (1.f + sinf(theta) * ry_plus / size.y)));
-
6321 i++;
-
6322 UUID.at(i) = addTriangle(make_vec3(rx * cosf(theta_plus), ry * sinf(theta_plus), 0), make_vec3(rx_plus * cosf(theta), ry_plus * sinf(theta), 0), make_vec3(rx_plus * cosf(theta_plus), ry_plus * sinf(theta_plus), 0), texturefile, make_vec2(0.5f * (1.f + cosf(theta_plus) * rx / size.x), 0.5f * (1.f + sinf(theta_plus) * ry / size.y)), make_vec2(0.5f * (1.f + cosf(theta) * rx_plus / size.x), 0.5f * (1.f + sinf(theta) * ry_plus / size.y)), make_vec2(0.5f * (1.f + cosf(theta_plus) * rx_plus / size.x), 0.5f * (1.f + sinf(theta_plus) * ry_plus / size.y)));
-
6323 }
-
6324 getPrimitivePointer_private(UUID.at(i))->rotate(rotation.elevation, "y");
-
6325 getPrimitivePointer_private(UUID.at(i))->rotate(rotation.azimuth, "z");
-
6326 getPrimitivePointer_private(UUID.at(i))->translate(center);
-
6327
-
6328 i++;
-
6329 }
-
6330 }
+
+
6312std::vector<uint> Context::addDisk(uint Ndivs, const vec3 &center, const vec2 &size, const SphericalCoord &rotation, const RGBAcolor &color ){
+
6313 return addDisk(make_int2(Ndivs,1),center,size,rotation,color);
+
6314}
+
+
6315
+
+
6316std::vector<uint> Context::addDisk(uint Ndivs, const vec3 &center, const vec2 &size, const SphericalCoord &rotation, const char* texture_file ){
+
6317 return addDisk(make_int2(Ndivs,1),center,size,rotation,texture_file);
+
6318}
+
+
6319
+
+
6320std::vector<uint> Context::addDisk(const int2 &Ndivs, const vec3 &center, const vec2 &size, const SphericalCoord &rotation, const RGBcolor &color ){
+
6321 return addDisk(Ndivs,center,size,rotation,make_RGBAcolor(color,1));
+
6322}
+
+
6323
+
+
6324std::vector<uint> Context::addDisk(const int2 &Ndivs, const vec3 &center, const vec2 &size, const SphericalCoord &rotation, const RGBAcolor &color ){
+
6325
+
6326 std::vector<uint> UUID;
+
6327 UUID.resize(Ndivs.x+Ndivs.x*(Ndivs.y-1)*2);
+
6328 int i=0;
+
6329 for( int r=0; r < Ndivs.y; r++ ) {
+
6330 for (int t = 0; t < Ndivs.x; t++) {
6331
-
6332 return UUID;
-
6333
-
6334}
-
+
6332 float dtheta = 2.f * float(M_PI) / float(Ndivs.x);
+
6333 float theta = dtheta*float(t);
+
6334 float theta_plus = dtheta*float(t+1);
6335
-
-
6336std::vector<uint> Context::addCone(uint Ndivs, const vec3 &node0, const vec3 &node1, float radius0, float radius1 ){
-
6337
-
6338 RGBcolor color;
-
6339 color = make_RGBcolor(0.f,0.75f,0.f); //Default color is green
-
6340
-
6341 return addCone(Ndivs, node0, node1, radius0, radius1, color);
-
6342
-
6343}
-
-
6344
-
-
6345std::vector<uint> Context::addCone(uint Ndivs, const vec3 &node0, const vec3 &node1, float radius0, float radius1, RGBcolor &color ){
-
6346
-
6347 std::vector<helios::vec3> nodes{node0, node1};
-
6348 std::vector<float> radii{radius0, radius1};
-
6349
-
6350 vec3 vec, convec;
-
6351 std::vector<float> cfact(Ndivs+1);
-
6352 std::vector<float> sfact(Ndivs+1);
-
6353 std::vector<std::vector<vec3> > xyz, normal;
-
6354 xyz.resize(Ndivs+1);
-
6355 normal.resize(Ndivs+1);
-
6356 for( uint j=0; j<Ndivs+1; j++ ){
-
6357 xyz.at(j).resize(2);
-
6358 normal.at(j).resize(2);
-
6359 }
-
6360 vec3 nvec(0.1817f,0.6198f,0.7634f);//random vector to get things going
-
6361
-
6362 for( int j=0; j<Ndivs+1; j++ ){
-
6363 cfact[j]=cosf(2.f*float(M_PI)*float(j)/float(Ndivs));
-
6364 sfact[j]=sinf(2.f*float(M_PI)*float(j)/float(Ndivs));
-
6365 }
-
6366
-
6367 for( int i=0; i<2; i++ ){ //looping over cone segments
+
6336 float rx = size.x/float(Ndivs.y)*float(r);
+
6337 float ry = size.y/float(Ndivs.y)*float(r);
+
6338
+
6339 float rx_plus = size.x/float(Ndivs.y)*float(r+1);
+
6340 float ry_plus = size.y/float(Ndivs.y)*float(r+1);
+
6341
+
6342 if( r==0 ) {
+
6343 UUID.at(i) = addTriangle(make_vec3(0, 0, 0), make_vec3(rx_plus * cosf(theta), ry_plus * sinf(theta), 0),make_vec3(rx_plus * cosf(theta_plus), ry_plus * sinf(theta_plus), 0), color);
+
6344 }else{
+
6345 UUID.at(i) = addTriangle(make_vec3(rx * cosf(theta_plus), ry * sinf(theta_plus), 0), make_vec3(rx * cosf(theta), ry * sinf(theta), 0),make_vec3(rx_plus * cosf(theta), ry_plus * sinf(theta), 0), color);
+
6346 i++;
+
6347 UUID.at(i) = addTriangle(make_vec3(rx * cosf(theta_plus), ry * sinf(theta_plus), 0), make_vec3(rx_plus * cosf(theta), ry_plus * sinf(theta), 0),make_vec3(rx_plus * cosf(theta_plus), ry_plus * sinf(theta_plus), 0), color);
+
6348 }
+
6349 getPrimitivePointer_private(UUID.at(i))->rotate(rotation.elevation, "y");
+
6350 getPrimitivePointer_private(UUID.at(i))->rotate(rotation.azimuth, "z");
+
6351 getPrimitivePointer_private(UUID.at(i))->translate(center);
+
6352
+
6353 i++;
+
6354 }
+
6355 }
+
6356
+
6357 return UUID;
+
6358
+
6359}
+
+
6360
+
+
6361std::vector<uint> Context::addDisk(const int2 &Ndivs, const vec3 &center, const vec2 &size, const SphericalCoord &rotation, const char* texturefile ){
+
6362
+
6363 if( !validateTextureFileExtenstion(texturefile) ) {
+
6364 helios_runtime_error("ERROR (Context::addDisk): Texture file " + std::string(texturefile) + " is not PNG or JPEG format.");
+
6365 }else if( !doesTextureFileExist(texturefile) ) {
+
6366 helios_runtime_error("ERROR (Context::addDisk): Texture file " + std::string(texturefile) + " does not exist.");
+
6367 }
6368
-
6369 if(i==0){
-
6370 vec.x=nodes[i+1].x-nodes[i].x;
-
6371 vec.y=nodes[i+1].y-nodes[i].y;
-
6372 vec.z=nodes[i+1].z-nodes[i].z;
-
6373 }else if(i==1){
-
6374 vec.x=nodes[i].x-nodes[i-1].x;
-
6375 vec.y=nodes[i].y-nodes[i-1].y;
-
6376 vec.z=nodes[i].z-nodes[i-1].z;
-
6377 }
+
6369 std::vector<uint> UUID;
+
6370 UUID.resize(Ndivs.x+Ndivs.x*(Ndivs.y-1)*2);
+
6371 int i=0;
+
6372 for( int r=0; r < Ndivs.y; r++ ) {
+
6373 for (int t = 0; t < Ndivs.x; t++) {
+
6374
+
6375 float dtheta = 2.f * float(M_PI) / float(Ndivs.x);
+
6376 float theta = dtheta*float(t);
+
6377 float theta_plus = dtheta*float(t+1);
6378
-
6379 float norm;
-
6380 convec = cross(nvec,vec);
-
6381 norm=convec.magnitude();
-
6382 convec.x=convec.x/norm;
-
6383 convec.y=convec.y/norm;
-
6384 convec.z=convec.z/norm;
-
6385 nvec = cross(vec,convec);
-
6386 norm=nvec.magnitude();
-
6387 nvec.x=nvec.x/norm;
-
6388 nvec.y=nvec.y/norm;
-
6389 nvec.z=nvec.z/norm;
-
6390
-
6391
-
6392
-
6393 for( int j=0; j<Ndivs+1; j++ ){
-
6394 normal[j][i].x=cfact[j]*radii[i]*nvec.x+sfact[j]*radii[i]*convec.x;
-
6395 normal[j][i].y=cfact[j]*radii[i]*nvec.y+sfact[j]*radii[i]*convec.y;
-
6396 normal[j][i].z=cfact[j]*radii[i]*nvec.z+sfact[j]*radii[i]*convec.z;
-
6397
-
6398 xyz[j][i].x=nodes[i].x+normal[j][i].x;
-
6399 xyz[j][i].y=nodes[i].y+normal[j][i].y;
-
6400 xyz[j][i].z=nodes[i].z+normal[j][i].z;
-
6401
-
6402 normal[j][i] = normal[j][i]/radii[i];
-
6403 }
+
6379 float rx = size.x/float(Ndivs.y)*float(r);
+
6380 float ry = size.y/float(Ndivs.y)*float(r);
+
6381 float rx_plus = size.x/float(Ndivs.y)*float(r+1);
+
6382 float ry_plus = size.y/float(Ndivs.y)*float(r+1);
+
6383
+
6384 if( r==0 ) {
+
6385 UUID.at(i) = addTriangle(make_vec3(0, 0, 0), make_vec3(rx_plus * cosf(theta), ry_plus * sinf(theta), 0), make_vec3(rx_plus * cosf(theta_plus), ry_plus * sinf(theta_plus), 0), texturefile, make_vec2(0.5, 0.5), make_vec2(0.5f * (1.f + cosf(theta) * rx_plus / size.x), 0.5f * (1.f + sinf(theta) * ry_plus / size.y)), make_vec2(0.5f * (1.f + cosf(theta_plus) * rx_plus / size.x), 0.5f * (1.f + sinf(theta_plus) * ry_plus / size.y)));
+
6386 }else{
+
6387 UUID.at(i) = addTriangle(make_vec3(rx * cosf(theta_plus), ry * sinf(theta_plus), 0), make_vec3(rx * cosf(theta), ry * sinf(theta), 0), make_vec3(rx_plus * cosf(theta), ry_plus * sinf(theta), 0), texturefile, make_vec2(0.5f * (1.f + cosf(theta_plus) * rx / size.x), 0.5f * (1.f + sinf(theta_plus) * ry / size.y)), make_vec2(0.5f * (1.f + cosf(theta) * rx / size.x), 0.5f * (1.f + sinf(theta) * ry / size.y)), make_vec2(0.5f * (1.f + cosf(theta) * rx_plus / size.x), 0.5f * (1.f + sinf(theta) * ry_plus / size.y)));
+
6388 i++;
+
6389 UUID.at(i) = addTriangle(make_vec3(rx * cosf(theta_plus), ry * sinf(theta_plus), 0), make_vec3(rx_plus * cosf(theta), ry_plus * sinf(theta), 0), make_vec3(rx_plus * cosf(theta_plus), ry_plus * sinf(theta_plus), 0), texturefile, make_vec2(0.5f * (1.f + cosf(theta_plus) * rx / size.x), 0.5f * (1.f + sinf(theta_plus) * ry / size.y)), make_vec2(0.5f * (1.f + cosf(theta) * rx_plus / size.x), 0.5f * (1.f + sinf(theta) * ry_plus / size.y)), make_vec2(0.5f * (1.f + cosf(theta_plus) * rx_plus / size.x), 0.5f * (1.f + sinf(theta_plus) * ry_plus / size.y)));
+
6390 }
+
6391 getPrimitivePointer_private(UUID.at(i))->rotate(rotation.elevation, "y");
+
6392 getPrimitivePointer_private(UUID.at(i))->rotate(rotation.azimuth, "z");
+
6393 getPrimitivePointer_private(UUID.at(i))->translate(center);
+
6394
+
6395 i++;
+
6396 }
+
6397 }
+
6398
+
6399 return UUID;
+
6400
+
6401}
+
+
6402
+
+
6403std::vector<uint> Context::addCone(uint Ndivs, const vec3 &node0, const vec3 &node1, float radius0, float radius1 ){
6404
-
6405 }
-
6406
-
6407 vec3 v0, v1, v2;
-
6408 std::vector<uint> UUID;
+
6405 RGBcolor color;
+
6406 color = make_RGBcolor(0.f,0.75f,0.f); //Default color is green
+
6407
+
6408 return addCone(Ndivs, node0, node1, radius0, radius1, color);
6409
-
6410 for( int i=0; i<2-1; i++ ){
-
6411 for( int j=0; j<Ndivs; j++ ){
-
6412
-
6413 v0 = xyz[j][i];
-
6414 v1 = xyz[j+1][i+1];
-
6415 v2 = xyz[j+1][i];
+
6410}
+
+
6411
+
+
6412std::vector<uint> Context::addCone(uint Ndivs, const vec3 &node0, const vec3 &node1, float radius0, float radius1, RGBcolor &color ){
+
6413
+
6414 std::vector<helios::vec3> nodes{node0, node1};
+
6415 std::vector<float> radii{radius0, radius1};
6416
-
6417 UUID.push_back(addTriangle( v0, v1, v2, color ));
-
6418
-
6419 v0 = xyz[j][i];
-
6420 v1 = xyz[j][i+1];
-
6421 v2 = xyz[j+1][i+1];
-
6422
-
6423 UUID.push_back(addTriangle( v0, v1, v2, color ));
-
6424
-
6425
-
6426 }
-
6427 }
+
6417 vec3 vec, convec;
+
6418 std::vector<float> cfact(Ndivs+1);
+
6419 std::vector<float> sfact(Ndivs+1);
+
6420 std::vector<std::vector<vec3> > xyz, normal;
+
6421 xyz.resize(Ndivs+1);
+
6422 normal.resize(Ndivs+1);
+
6423 for( uint j=0; j<Ndivs+1; j++ ){
+
6424 xyz.at(j).resize(2);
+
6425 normal.at(j).resize(2);
+
6426 }
+
6427 vec3 nvec(0.1817f,0.6198f,0.7634f);//random vector to get things going
6428
-
6429 return UUID;
-
6430
-
6431}
-
-
6432
-
-
6433std::vector<uint> Context::addCone(uint Ndivs, const vec3 &node0, const vec3 &node1, float radius0, float radius1, const char* texturefile ){
-
6434
-
6435 if( !validateTextureFileExtenstion(texturefile) ) {
-
6436 helios_runtime_error("ERROR (Context::addCone): Texture file " + std::string(texturefile) + " is not PNG or JPEG format.");
-
6437 }else if( !doesTextureFileExist(texturefile) ) {
-
6438 helios_runtime_error("ERROR (Context::addCone): Texture file " + std::string(texturefile) + " does not exist.");
-
6439 }
-
6440
-
6441 std::vector<helios::vec3> nodes{node0, node1};
-
6442 std::vector<float> radii{radius0, radius1};
-
6443
-
6444 vec3 vec, convec;
-
6445 std::vector<float> cfact(Ndivs+1);
-
6446 std::vector<float> sfact(Ndivs+1);
-
6447 std::vector<std::vector<vec3> > xyz, normal;
-
6448 std::vector<std::vector<vec2> > uv;
-
6449 xyz.resize(Ndivs+1);
-
6450 normal.resize(Ndivs+1);
-
6451 uv.resize(Ndivs+1);
-
6452 for( uint j=0; j<Ndivs+1; j++ ){
-
6453 xyz.at(j).resize(2);
-
6454 normal.at(j).resize(2);
-
6455 uv.at(j).resize(2);
-
6456 }
-
6457 vec3 nvec(0.f,1.f,0.f);
+
6429 for( int j=0; j<Ndivs+1; j++ ){
+
6430 cfact[j]=cosf(2.f*float(M_PI)*float(j)/float(Ndivs));
+
6431 sfact[j]=sinf(2.f*float(M_PI)*float(j)/float(Ndivs));
+
6432 }
+
6433
+
6434 for( int i=0; i<2; i++ ){ //looping over cone segments
+
6435
+
6436 if(i==0){
+
6437 vec.x=nodes[i+1].x-nodes[i].x;
+
6438 vec.y=nodes[i+1].y-nodes[i].y;
+
6439 vec.z=nodes[i+1].z-nodes[i].z;
+
6440 }else if(i==1){
+
6441 vec.x=nodes[i].x-nodes[i-1].x;
+
6442 vec.y=nodes[i].y-nodes[i-1].y;
+
6443 vec.z=nodes[i].z-nodes[i-1].z;
+
6444 }
+
6445
+
6446 float norm;
+
6447 convec = cross(nvec,vec);
+
6448 norm=convec.magnitude();
+
6449 convec.x=convec.x/norm;
+
6450 convec.y=convec.y/norm;
+
6451 convec.z=convec.z/norm;
+
6452 nvec = cross(vec,convec);
+
6453 norm=nvec.magnitude();
+
6454 nvec.x=nvec.x/norm;
+
6455 nvec.y=nvec.y/norm;
+
6456 nvec.z=nvec.z/norm;
+
6457
6458
-
6459 for( int j=0; j<Ndivs+1; j++ ){
-
6460 cfact[j]=cosf(2.f*float(M_PI)*float(j)/float(Ndivs));
-
6461 sfact[j]=sinf(2.f*float(M_PI)*float(j)/float(Ndivs));
-
6462 }
-
6463
-
6464 for( int i=0; i<2; i++ ){ //looping over cone segments
-
6465
-
6466 if(i==0){
-
6467 vec.x=nodes[i+1].x-nodes[i].x;
-
6468 vec.y=nodes[i+1].y-nodes[i].y;
-
6469 vec.z=nodes[i+1].z-nodes[i].z;
-
6470 }else if(i==1){
-
6471 vec.x=nodes[i].x-nodes[i-1].x;
-
6472 vec.y=nodes[i].y-nodes[i-1].y;
-
6473 vec.z=nodes[i].z-nodes[i-1].z;
-
6474 }
-
6475
-
6476 float norm;
-
6477 convec = cross(nvec,vec);
-
6478 norm=convec.magnitude();
-
6479 convec.x=convec.x/norm;
-
6480 convec.y=convec.y/norm;
-
6481 convec.z=convec.z/norm;
-
6482 nvec = cross(vec,convec);
-
6483 norm=nvec.magnitude();
-
6484 nvec.x=nvec.x/norm;
-
6485 nvec.y=nvec.y/norm;
-
6486 nvec.z=nvec.z/norm;
-
6487
-
6488 for( int j=0; j<Ndivs+1; j++ ){
-
6489 normal[j][i].x=cfact[j]*radii[i]*nvec.x+sfact[j]*radii[i]*convec.x;
-
6490 normal[j][i].y=cfact[j]*radii[i]*nvec.y+sfact[j]*radii[i]*convec.y;
-
6491 normal[j][i].z=cfact[j]*radii[i]*nvec.z+sfact[j]*radii[i]*convec.z;
+
6459
+
6460 for( int j=0; j<Ndivs+1; j++ ){
+
6461 normal[j][i].x=cfact[j]*radii[i]*nvec.x+sfact[j]*radii[i]*convec.x;
+
6462 normal[j][i].y=cfact[j]*radii[i]*nvec.y+sfact[j]*radii[i]*convec.y;
+
6463 normal[j][i].z=cfact[j]*radii[i]*nvec.z+sfact[j]*radii[i]*convec.z;
+
6464
+
6465 xyz[j][i].x=nodes[i].x+normal[j][i].x;
+
6466 xyz[j][i].y=nodes[i].y+normal[j][i].y;
+
6467 xyz[j][i].z=nodes[i].z+normal[j][i].z;
+
6468
+
6469 normal[j][i] = normal[j][i]/radii[i];
+
6470 }
+
6471
+
6472 }
+
6473
+
6474 vec3 v0, v1, v2;
+
6475 std::vector<uint> UUID;
+
6476
+
6477 for( int i=0; i<2-1; i++ ){
+
6478 for( int j=0; j<Ndivs; j++ ){
+
6479
+
6480 v0 = xyz[j][i];
+
6481 v1 = xyz[j+1][i+1];
+
6482 v2 = xyz[j+1][i];
+
6483
+
6484 UUID.push_back(addTriangle( v0, v1, v2, color ));
+
6485
+
6486 v0 = xyz[j][i];
+
6487 v1 = xyz[j][i+1];
+
6488 v2 = xyz[j+1][i+1];
+
6489
+
6490 UUID.push_back(addTriangle( v0, v1, v2, color ));
+
6491
6492
-
6493 xyz[j][i].x=nodes[i].x+normal[j][i].x;
-
6494 xyz[j][i].y=nodes[i].y+normal[j][i].y;
-
6495 xyz[j][i].z=nodes[i].z+normal[j][i].z;
-
6496
-
6497 uv[j][i].x = float(i)/float(2-1);
-
6498 uv[j][i].y = float(j)/float(Ndivs);
-
6499
-
6500 normal[j][i] = normal[j][i]/radii[i];
-
6501 }
-
6502
-
6503 }
-
6504
-
6505 vec3 v0, v1, v2;
-
6506 vec2 uv0, uv1, uv2;
-
6507 std::vector<uint> UUID;
-
6508
-
6509 for( int i=0; i<2-1; i++ ){
-
6510 for( int j=0; j<Ndivs; j++ ){
-
6511
-
6512 v0 = xyz[j][i];
-
6513 v1 = xyz[j+1][i+1];
-
6514 v2 = xyz[j+1][i];
-
6515
-
6516 uv0 = uv[j][i];
-
6517 uv1 = uv[j+1][i+1];
-
6518 uv2 = uv[j+1][i];
-
6519
-
6520 if( (v1-v0).magnitude()>1e-6 && (v2-v0).magnitude()>1e-6 && (v2-v1).magnitude()>1e-6 ){
-
6521 UUID.push_back(addTriangle( v0, v1, v2, texturefile, uv0, uv1, uv2 ));
-
6522 }
-
6523
-
6524 v0 = xyz[j][i];
-
6525 v1 = xyz[j][i+1];
-
6526 v2 = xyz[j+1][i+1];
-
6527
-
6528 uv0 = uv[j][i];
-
6529 uv1 = uv[j][i+1];
-
6530 uv2 = uv[j+1][i+1];
-
6531
-
6532 if( (v1-v0).magnitude()>1e-6 && (v2-v0).magnitude()>1e-6 && (v2-v1).magnitude()>1e-6 ){
-
6533 UUID.push_back(addTriangle( v0, v1, v2, texturefile, uv0, uv1, uv2 ));
-
6534 }
-
6535
-
6536 }
-
6537 }
-
6538
-
6539 return UUID;
-
6540
-
6541}
+
6493 }
+
6494 }
+
6495
+
6496 return UUID;
+
6497
+
6498}
+
6499
+
+
6500std::vector<uint> Context::addCone(uint Ndivs, const vec3 &node0, const vec3 &node1, float radius0, float radius1, const char* texturefile ){
+
6501
+
6502 if( !validateTextureFileExtenstion(texturefile) ) {
+
6503 helios_runtime_error("ERROR (Context::addCone): Texture file " + std::string(texturefile) + " is not PNG or JPEG format.");
+
6504 }else if( !doesTextureFileExist(texturefile) ) {
+
6505 helios_runtime_error("ERROR (Context::addCone): Texture file " + std::string(texturefile) + " does not exist.");
+
6506 }
+
6507
+
6508 std::vector<helios::vec3> nodes{node0, node1};
+
6509 std::vector<float> radii{radius0, radius1};
+
6510
+
6511 vec3 vec, convec;
+
6512 std::vector<float> cfact(Ndivs+1);
+
6513 std::vector<float> sfact(Ndivs+1);
+
6514 std::vector<std::vector<vec3> > xyz, normal;
+
6515 std::vector<std::vector<vec2> > uv;
+
6516 xyz.resize(Ndivs+1);
+
6517 normal.resize(Ndivs+1);
+
6518 uv.resize(Ndivs+1);
+
6519 for( uint j=0; j<Ndivs+1; j++ ){
+
6520 xyz.at(j).resize(2);
+
6521 normal.at(j).resize(2);
+
6522 uv.at(j).resize(2);
+
6523 }
+
6524 vec3 nvec(0.f,1.f,0.f);
+
6525
+
6526 for( int j=0; j<Ndivs+1; j++ ){
+
6527 cfact[j]=cosf(2.f*float(M_PI)*float(j)/float(Ndivs));
+
6528 sfact[j]=sinf(2.f*float(M_PI)*float(j)/float(Ndivs));
+
6529 }
+
6530
+
6531 for( int i=0; i<2; i++ ){ //looping over cone segments
+
6532
+
6533 if(i==0){
+
6534 vec.x=nodes[i+1].x-nodes[i].x;
+
6535 vec.y=nodes[i+1].y-nodes[i].y;
+
6536 vec.z=nodes[i+1].z-nodes[i].z;
+
6537 }else if(i==1){
+
6538 vec.x=nodes[i].x-nodes[i-1].x;
+
6539 vec.y=nodes[i].y-nodes[i-1].y;
+
6540 vec.z=nodes[i].z-nodes[i-1].z;
+
6541 }
6542
-
-
6543void Context::colorPrimitiveByDataPseudocolor( const std::vector<uint> &UUIDs, const std::string &primitive_data, const std::string &colormap, uint Ncolors ){
-
6544
-
6545 colorPrimitiveByDataPseudocolor(UUIDs,primitive_data,colormap, Ncolors,9999999,-9999999);
-
6546
-
6547}
-
-
6548
-
-
6549void Context::colorPrimitiveByDataPseudocolor( const std::vector<uint> &UUIDs, const std::string &primitive_data, const std::string &colormap, uint Ncolors, float data_min, float data_max ){
-
6550
-
6551 std::map<uint,float> pcolor_data;
-
6552
-
6553 float data_min_new=9999999;
-
6554 float data_max_new=-9999999;
-
6555 for( uint UUID : UUIDs ){
-
6556
-
6557 if( !doesPrimitiveExist(UUID) ){
-
6558 std::cerr << "WARNING (Context::colorPrimitiveDataPseudocolor): primitive for UUID " << std::to_string(UUID) << " does not exist. Skipping this primitive." << std::endl;
-
6559 continue;
-
6560 }
-
6561
-
6562 float dataf=0;
-
6563 if( doesPrimitiveDataExist(UUID,primitive_data.c_str()) ) {
-
6564
-
6565 if( getPrimitiveDataType(UUID,primitive_data.c_str())!=HELIOS_TYPE_FLOAT && getPrimitiveDataType(UUID,primitive_data.c_str())!=HELIOS_TYPE_INT && getPrimitiveDataType(UUID,primitive_data.c_str())!=HELIOS_TYPE_UINT && getPrimitiveDataType(UUID,primitive_data.c_str())!=HELIOS_TYPE_DOUBLE ){
-
6566 std::cerr << "WARNING (Context::colorPrimitiveDataPseudocolor): Only primitive data types of int, uint, float, and double are supported for this function. Skipping this primitive." << std::endl;
-
6567 continue;
-
6568 }
+
6543 float norm;
+
6544 convec = cross(nvec,vec);
+
6545 norm=convec.magnitude();
+
6546 convec.x=convec.x/norm;
+
6547 convec.y=convec.y/norm;
+
6548 convec.z=convec.z/norm;
+
6549 nvec = cross(vec,convec);
+
6550 norm=nvec.magnitude();
+
6551 nvec.x=nvec.x/norm;
+
6552 nvec.y=nvec.y/norm;
+
6553 nvec.z=nvec.z/norm;
+
6554
+
6555 for( int j=0; j<Ndivs+1; j++ ){
+
6556 normal[j][i].x=cfact[j]*radii[i]*nvec.x+sfact[j]*radii[i]*convec.x;
+
6557 normal[j][i].y=cfact[j]*radii[i]*nvec.y+sfact[j]*radii[i]*convec.y;
+
6558 normal[j][i].z=cfact[j]*radii[i]*nvec.z+sfact[j]*radii[i]*convec.z;
+
6559
+
6560 xyz[j][i].x=nodes[i].x+normal[j][i].x;
+
6561 xyz[j][i].y=nodes[i].y+normal[j][i].y;
+
6562 xyz[j][i].z=nodes[i].z+normal[j][i].z;
+
6563
+
6564 uv[j][i].x = float(i)/float(2-1);
+
6565 uv[j][i].y = float(j)/float(Ndivs);
+
6566
+
6567 normal[j][i] = normal[j][i]/radii[i];
+
6568 }
6569
-
6570 if (getPrimitiveDataType(UUID, primitive_data.c_str()) ==
-
6571 HELIOS_TYPE_FLOAT) {
-
6572 float data;
-
6573 getPrimitiveData(UUID, primitive_data.c_str(), data);
-
6574 dataf = data;
-
6575 } else if (getPrimitiveDataType(UUID, primitive_data.c_str()) ==
-
6576 HELIOS_TYPE_DOUBLE) {
-
6577 double data;
-
6578 getPrimitiveData(UUID, primitive_data.c_str(), data);
-
6579 dataf = float(data);
-
6580 } else if (getPrimitiveDataType(UUID, primitive_data.c_str()) ==
-
6581 HELIOS_TYPE_INT) {
-
6582 int data;
-
6583 getPrimitiveData(UUID, primitive_data.c_str(), data);
-
6584 dataf = float(data);
-
6585 } else if (getPrimitiveDataType(UUID, primitive_data.c_str()) ==
-
6586 HELIOS_TYPE_UINT) {
-
6587 uint data;
-
6588 getPrimitiveData(UUID, primitive_data.c_str(), data);
-
6589 dataf = float(data);
-
6590 }
-
6591 }
-
6592
-
6593 if( data_min==9999999 && data_max==-9999999 ) {
-
6594 if (dataf < data_min_new) {
-
6595 data_min_new = dataf;
-
6596 }
-
6597 if (dataf > data_max_new) {
-
6598 data_max_new = dataf;
-
6599 }
-
6600 }
-
6601
-
6602 pcolor_data[UUID] = dataf;
-
6603
-
6604 }
+
6570 }
+
6571
+
6572 vec3 v0, v1, v2;
+
6573 vec2 uv0, uv1, uv2;
+
6574 std::vector<uint> UUID;
+
6575
+
6576 for( int i=0; i<2-1; i++ ){
+
6577 for( int j=0; j<Ndivs; j++ ){
+
6578
+
6579 v0 = xyz[j][i];
+
6580 v1 = xyz[j+1][i+1];
+
6581 v2 = xyz[j+1][i];
+
6582
+
6583 uv0 = uv[j][i];
+
6584 uv1 = uv[j+1][i+1];
+
6585 uv2 = uv[j+1][i];
+
6586
+
6587 if( (v1-v0).magnitude()>1e-6 && (v2-v0).magnitude()>1e-6 && (v2-v1).magnitude()>1e-6 ){
+
6588 UUID.push_back(addTriangle( v0, v1, v2, texturefile, uv0, uv1, uv2 ));
+
6589 }
+
6590
+
6591 v0 = xyz[j][i];
+
6592 v1 = xyz[j][i+1];
+
6593 v2 = xyz[j+1][i+1];
+
6594
+
6595 uv0 = uv[j][i];
+
6596 uv1 = uv[j][i+1];
+
6597 uv2 = uv[j+1][i+1];
+
6598
+
6599 if( (v1-v0).magnitude()>1e-6 && (v2-v0).magnitude()>1e-6 && (v2-v1).magnitude()>1e-6 ){
+
6600 UUID.push_back(addTriangle( v0, v1, v2, texturefile, uv0, uv1, uv2 ));
+
6601 }
+
6602
+
6603 }
+
6604 }
6605
-
6606 if( data_min==9999999 && data_max==-9999999 ) {
-
6607 data_min = data_min_new;
-
6608 data_max = data_max_new;
-
6609 }
-
6610
-
6611 std::vector<RGBcolor> colormap_data = generateColormap( colormap, Ncolors );
-
6612
-
6613 std::map<std::string,std::vector<std::string> > cmap_texture_filenames;
-
6614
-
6615 for( auto &data : pcolor_data ) {
-
6616
-
6617 uint UUID = data.first;
-
6618 float pdata = data.second;
+
6606 return UUID;
+
6607
+
6608}
+
+
6609
+
+
6610void Context::colorPrimitiveByDataPseudocolor( const std::vector<uint> &UUIDs, const std::string &primitive_data, const std::string &colormap, uint Ncolors ){
+
6611
+
6612 colorPrimitiveByDataPseudocolor(UUIDs,primitive_data,colormap, Ncolors,9999999,-9999999);
+
6613
+
6614}
+
+
6615
+
+
6616void Context::colorPrimitiveByDataPseudocolor( const std::vector<uint> &UUIDs, const std::string &primitive_data, const std::string &colormap, uint Ncolors, float data_min, float data_max ){
+
6617
+
6618 std::map<uint,float> pcolor_data;
6619
-
6620 std::string texturefile = getPrimitiveTextureFile(UUID);
-
6621
-
6622 int cmap_ind = round((pdata - data_min) / (data_max - data_min) * float(Ncolors - 1));
+
6620 float data_min_new=9999999;
+
6621 float data_max_new=-9999999;
+
6622 for( uint UUID : UUIDs ){
6623
-
6624 if( cmap_ind<0 ){
-
6625 cmap_ind=0;
-
6626 }else if( cmap_ind>=Ncolors ){
-
6627 cmap_ind=Ncolors-1;
-
6628 }
-
6629
-
6630 if ( !texturefile.empty() && primitiveTextureHasTransparencyChannel(UUID)) { // primitive has texture with transparency channel
+
6624 if( !doesPrimitiveExist(UUID) ){
+
6625 std::cerr << "WARNING (Context::colorPrimitiveDataPseudocolor): primitive for UUID " << std::to_string(UUID) << " does not exist. Skipping this primitive." << std::endl;
+
6626 continue;
+
6627 }
+
6628
+
6629 float dataf=0;
+
6630 if( doesPrimitiveDataExist(UUID,primitive_data.c_str()) ) {
6631
-
6632 overridePrimitiveTextureColor(UUID);
-
6633 setPrimitiveColor(UUID, colormap_data.at(cmap_ind));
-
6634
-
6635 } else { // primitive does not have texture with transparency channel - assign constant color
+
6632 if( getPrimitiveDataType(UUID,primitive_data.c_str())!=HELIOS_TYPE_FLOAT && getPrimitiveDataType(UUID,primitive_data.c_str())!=HELIOS_TYPE_INT && getPrimitiveDataType(UUID,primitive_data.c_str())!=HELIOS_TYPE_UINT && getPrimitiveDataType(UUID,primitive_data.c_str())!=HELIOS_TYPE_DOUBLE ){
+
6633 std::cerr << "WARNING (Context::colorPrimitiveDataPseudocolor): Only primitive data types of int, uint, float, and double are supported for this function. Skipping this primitive." << std::endl;
+
6634 continue;
+
6635 }
6636
-
6637 if (!getPrimitiveTextureFile(UUID).empty()) {
-
6638 overridePrimitiveTextureColor(UUID);
-
6639 }
-
6640
-
6641 setPrimitiveColor(UUID, colormap_data.at(cmap_ind));
-
6642 }
-
6643 }
-
6644
-
6645}
-
-
6646
-
6647std::vector<RGBcolor> Context::generateColormap( const std::vector<helios::RGBcolor> &ctable, const std::vector<float> &cfrac, uint Ncolors ){
-
6648
-
6649 if( Ncolors>9999 ){
-
6650 std::cerr << "WARNING (Context::generateColormap): Truncating number of color map textures to maximum value of 9999." << std::endl;
-
6651 }
-
6652
-
6653 if( ctable.size()!=cfrac.size() ){
-
6654 helios_runtime_error("ERROR (Context::generateColormap): The length of arguments 'ctable' and 'cfrac' must match.");
-
6655 }
-
6656 if( ctable.empty() ){
-
6657 helios_runtime_error("ERROR (Context::generateColormap): 'ctable' and 'cfrac' arguments contain empty vectors.");
-
6658 }
+
6637 if (getPrimitiveDataType(UUID, primitive_data.c_str()) ==
+
6638 HELIOS_TYPE_FLOAT) {
+
6639 float data;
+
6640 getPrimitiveData(UUID, primitive_data.c_str(), data);
+
6641 dataf = data;
+
6642 } else if (getPrimitiveDataType(UUID, primitive_data.c_str()) ==
+
6643 HELIOS_TYPE_DOUBLE) {
+
6644 double data;
+
6645 getPrimitiveData(UUID, primitive_data.c_str(), data);
+
6646 dataf = float(data);
+
6647 } else if (getPrimitiveDataType(UUID, primitive_data.c_str()) ==
+
6648 HELIOS_TYPE_INT) {
+
6649 int data;
+
6650 getPrimitiveData(UUID, primitive_data.c_str(), data);
+
6651 dataf = float(data);
+
6652 } else if (getPrimitiveDataType(UUID, primitive_data.c_str()) ==
+
6653 HELIOS_TYPE_UINT) {
+
6654 uint data;
+
6655 getPrimitiveData(UUID, primitive_data.c_str(), data);
+
6656 dataf = float(data);
+
6657 }
+
6658 }
6659
-
6660 std::vector<RGBcolor> color_table;
-
6661 color_table.resize(Ncolors);
-
6662
-
6663 for (int i = 0; i < Ncolors; i++){
-
6664
-
6665 float frac = float(i)/float(Ncolors-1)*cfrac.back();
-
6666
-
6667 int j;
-
6668 for( j=0; j<cfrac.size()-1; j++ ){
-
6669 if( frac>=cfrac.at(j) && frac<=cfrac.at(j+1) ){
-
6670 break;
-
6671 }
-
6672 }
-
6673
-
6674 float cminus = std::fmaxf(0.f,cfrac.at(j));
-
6675 float cplus = std::fminf(1.f,cfrac.at(j+1));
-
6676
-
6677 float jfrac = (frac-cminus)/(cplus-cminus);
-
6678
-
6679 RGBcolor color;
-
6680 color.r = ctable.at(j).r+jfrac*(ctable.at(j+1).r-ctable.at(j).r);
-
6681 color.g = ctable.at(j).g+jfrac*(ctable.at(j+1).g-ctable.at(j).g);
-
6682 color.b = ctable.at(j).b+jfrac*(ctable.at(j+1).b-ctable.at(j).b);
+
6660 if( data_min==9999999 && data_max==-9999999 ) {
+
6661 if (dataf < data_min_new) {
+
6662 data_min_new = dataf;
+
6663 }
+
6664 if (dataf > data_max_new) {
+
6665 data_max_new = dataf;
+
6666 }
+
6667 }
+
6668
+
6669 pcolor_data[UUID] = dataf;
+
6670
+
6671 }
+
6672
+
6673 if( data_min==9999999 && data_max==-9999999 ) {
+
6674 data_min = data_min_new;
+
6675 data_max = data_max_new;
+
6676 }
+
6677
+
6678 std::vector<RGBcolor> colormap_data = generateColormap( colormap, Ncolors );
+
6679
+
6680 std::map<std::string,std::vector<std::string> > cmap_texture_filenames;
+
6681
+
6682 for( auto &data : pcolor_data ) {
6683
-
6684 color_table.at(i) = color;
-
6685
-
6686 }
-
6687
-
6688 return color_table;
-
6689
-
6690}
-
6691
-
6692std::vector<RGBcolor> Context::generateColormap( const std::string &colormap, uint Ncolors ){
-
6693
-
6694 std::vector<RGBcolor> ctable_c;
-
6695 std::vector<float> clocs_c;
+
6684 uint UUID = data.first;
+
6685 float pdata = data.second;
+
6686
+
6687 std::string texturefile = getPrimitiveTextureFile(UUID);
+
6688
+
6689 int cmap_ind = round((pdata - data_min) / (data_max - data_min) * float(Ncolors - 1));
+
6690
+
6691 if( cmap_ind<0 ){
+
6692 cmap_ind=0;
+
6693 }else if( cmap_ind>=Ncolors ){
+
6694 cmap_ind=Ncolors-1;
+
6695 }
6696
-
6697 if( colormap == "hot" ) {
+
6697 if ( !texturefile.empty() && primitiveTextureHasTransparencyChannel(UUID)) { // primitive has texture with transparency channel
6698
-
6699 ctable_c.resize(5);
-
6700 ctable_c.at(0) = make_RGBcolor(0.f, 0.f, 0.f);
-
6701 ctable_c.at(1) = make_RGBcolor(0.5f, 0.f, 0.5f);
-
6702 ctable_c.at(2) = make_RGBcolor(1.f, 0.f, 0.f);
-
6703 ctable_c.at(3) = make_RGBcolor(1.f, 0.5f, 0.f);
-
6704 ctable_c.at(4) = make_RGBcolor(1.f, 1.f, 0.f);
-
6705
-
6706 clocs_c.resize(5);
-
6707 clocs_c.at(0) = 0.f;
-
6708 clocs_c.at(1) = 0.25f;
-
6709 clocs_c.at(2) = 0.5f;
-
6710 clocs_c.at(3) = 0.75f;
-
6711 clocs_c.at(4) = 1.f;
-
6712
-
6713 }else if( colormap == "cool") {
-
6714
-
6715 ctable_c.resize(2);
-
6716 ctable_c.at(1) = RGB::cyan;
-
6717 ctable_c.at(2) = RGB::magenta;
-
6718
-
6719 clocs_c.resize(2);
-
6720 clocs_c.at(1) = 0.f;
-
6721 clocs_c.at(2) = 1.f;
-
6722
-
6723 }else if( colormap == "lava" ) {
-
6724
-
6725 ctable_c.resize(5);
-
6726 ctable_c.at(0) = make_RGBcolor(0.f, 0.05f, 0.05f);
-
6727 ctable_c.at(1) = make_RGBcolor(0.f, 0.6f, 0.6f);
-
6728 ctable_c.at(2) = make_RGBcolor(1.f, 1.f, 1.f);
-
6729 ctable_c.at(3) = make_RGBcolor(1.f, 0.f, 0.f);
-
6730 ctable_c.at(4) = make_RGBcolor(0.5f, 0.f, 0.f);
+
6699 overridePrimitiveTextureColor(UUID);
+
6700 setPrimitiveColor(UUID, colormap_data.at(cmap_ind));
+
6701
+
6702 } else { // primitive does not have texture with transparency channel - assign constant color
+
6703
+
6704 if (!getPrimitiveTextureFile(UUID).empty()) {
+
6705 overridePrimitiveTextureColor(UUID);
+
6706 }
+
6707
+
6708 setPrimitiveColor(UUID, colormap_data.at(cmap_ind));
+
6709 }
+
6710 }
+
6711
+
6712}
+
+
6713
+
6714std::vector<RGBcolor> Context::generateColormap( const std::vector<helios::RGBcolor> &ctable, const std::vector<float> &cfrac, uint Ncolors ){
+
6715
+
6716 if( Ncolors>9999 ){
+
6717 std::cerr << "WARNING (Context::generateColormap): Truncating number of color map textures to maximum value of 9999." << std::endl;
+
6718 }
+
6719
+
6720 if( ctable.size()!=cfrac.size() ){
+
6721 helios_runtime_error("ERROR (Context::generateColormap): The length of arguments 'ctable' and 'cfrac' must match.");
+
6722 }
+
6723 if( ctable.empty() ){
+
6724 helios_runtime_error("ERROR (Context::generateColormap): 'ctable' and 'cfrac' arguments contain empty vectors.");
+
6725 }
+
6726
+
6727 std::vector<RGBcolor> color_table;
+
6728 color_table.resize(Ncolors);
+
6729
+
6730 for (int i = 0; i < Ncolors; i++){
6731
-
6732 clocs_c.resize(5);
-
6733 clocs_c.at(0) = 0.f;
-
6734 clocs_c.at(1) = 0.4f;
-
6735 clocs_c.at(2) = 0.5f;
-
6736 clocs_c.at(3) = 0.6f;
-
6737 clocs_c.at(4) = 1.f;
-
6738
-
6739 }else if( colormap == "rainbow" ){
+
6732 float frac = float(i)/float(Ncolors-1)*cfrac.back();
+
6733
+
6734 int j;
+
6735 for( j=0; j<cfrac.size()-1; j++ ){
+
6736 if( frac>=cfrac.at(j) && frac<=cfrac.at(j+1) ){
+
6737 break;
+
6738 }
+
6739 }
6740
-
6741 ctable_c.resize(4);
-
6742 ctable_c.at(0) = RGB::navy;
-
6743 ctable_c.at(1) = RGB::cyan;
-
6744 ctable_c.at(2) = RGB::yellow;
-
6745 ctable_c.at(3) = make_RGBcolor( 0.75f, 0.f, 0.f );
-
6746
-
6747 clocs_c.resize(4);
-
6748 clocs_c.at(0) = 0.f;
-
6749 clocs_c.at(1) = 0.3f;
-
6750 clocs_c.at(2) = 0.7f;
-
6751 clocs_c.at(3) = 1.f;
+
6741 float cminus = std::fmaxf(0.f,cfrac.at(j));
+
6742 float cplus = std::fminf(1.f,cfrac.at(j+1));
+
6743
+
6744 float jfrac = (frac-cminus)/(cplus-cminus);
+
6745
+
6746 RGBcolor color;
+
6747 color.r = ctable.at(j).r+jfrac*(ctable.at(j+1).r-ctable.at(j).r);
+
6748 color.g = ctable.at(j).g+jfrac*(ctable.at(j+1).g-ctable.at(j).g);
+
6749 color.b = ctable.at(j).b+jfrac*(ctable.at(j+1).b-ctable.at(j).b);
+
6750
+
6751 color_table.at(i) = color;
6752
-
6753 }else if( colormap == "parula" ){
+
6753 }
6754
-
6755 ctable_c.resize(4);
-
6756 ctable_c.at(0) = RGB::navy;
-
6757 ctable_c.at(1) = make_RGBcolor(0,0.6,0.6);
-
6758 ctable_c.at(2) = RGB::goldenrod;
-
6759 ctable_c.at(3) = RGB::yellow;
+
6755 return color_table;
+
6756
+
6757}
+
6758
+
6759std::vector<RGBcolor> Context::generateColormap( const std::string &colormap, uint Ncolors ){
6760
-
6761 clocs_c.resize(4);
-
6762 clocs_c.at(0) = 0.f;
-
6763 clocs_c.at(1) = 0.4f;
-
6764 clocs_c.at(2) = 0.7f;
-
6765 clocs_c.at(3) = 1.f;
-
6766
-
6767 }else if( colormap == "gray" ) {
-
6768
-
6769 ctable_c.resize(2);
-
6770 ctable_c.at(0) = RGB::black;
-
6771 ctable_c.at(1) = RGB::white;
+
6761 std::vector<RGBcolor> ctable_c;
+
6762 std::vector<float> clocs_c;
+
6763
+
6764 if( colormap == "hot" ) {
+
6765
+
6766 ctable_c.resize(5);
+
6767 ctable_c.at(0) = make_RGBcolor(0.f, 0.f, 0.f);
+
6768 ctable_c.at(1) = make_RGBcolor(0.5f, 0.f, 0.5f);
+
6769 ctable_c.at(2) = make_RGBcolor(1.f, 0.f, 0.f);
+
6770 ctable_c.at(3) = make_RGBcolor(1.f, 0.5f, 0.f);
+
6771 ctable_c.at(4) = make_RGBcolor(1.f, 1.f, 0.f);
6772
-
6773 clocs_c.resize(2);
+
6773 clocs_c.resize(5);
6774 clocs_c.at(0) = 0.f;
-
6775 clocs_c.at(1) = 1.f;
-
6776
-
6777 }else if( colormap == "green" ) {
-
6778
-
6779 ctable_c.resize(2);
-
6780 ctable_c.at(0) = RGB::black;
-
6781 ctable_c.at(1) = RGB::green;
-
6782
-
6783 clocs_c.resize(2);
-
6784 clocs_c.at(0) = 0.f;
-
6785 clocs_c.at(1) = 1.f;
-
6786
-
6787 }else{
-
6788 helios_runtime_error("ERROR (Context::generateColormapTextures): Unknown colormap "+colormap+".");
-
6789 }
-
6790
-
6791 return generateColormap( ctable_c, clocs_c, Ncolors );
-
6792
-
6793}
-
6794
-
6795std::vector<std::string> Context::generateTexturesFromColormap( const std::string &texturefile, const std::vector<RGBcolor> &colormap_data ){
-
6796
-
6797 uint Ncolors = colormap_data.size();
+
6775 clocs_c.at(1) = 0.25f;
+
6776 clocs_c.at(2) = 0.5f;
+
6777 clocs_c.at(3) = 0.75f;
+
6778 clocs_c.at(4) = 1.f;
+
6779
+
6780 }else if( colormap == "cool") {
+
6781
+
6782 ctable_c.resize(2);
+
6783 ctable_c.at(1) = RGB::cyan;
+
6784 ctable_c.at(2) = RGB::magenta;
+
6785
+
6786 clocs_c.resize(2);
+
6787 clocs_c.at(1) = 0.f;
+
6788 clocs_c.at(2) = 1.f;
+
6789
+
6790 }else if( colormap == "lava" ) {
+
6791
+
6792 ctable_c.resize(5);
+
6793 ctable_c.at(0) = make_RGBcolor(0.f, 0.05f, 0.05f);
+
6794 ctable_c.at(1) = make_RGBcolor(0.f, 0.6f, 0.6f);
+
6795 ctable_c.at(2) = make_RGBcolor(1.f, 1.f, 1.f);
+
6796 ctable_c.at(3) = make_RGBcolor(1.f, 0.f, 0.f);
+
6797 ctable_c.at(4) = make_RGBcolor(0.5f, 0.f, 0.f);
6798
-
6799 // check that texture file exists
-
6800 std::ifstream tfile(texturefile);
-
6801 if (!tfile) {
-
6802 helios_runtime_error("ERROR (Context::generateTexturesFromColormap): Texture file " + texturefile + " does not exist, or you do not have permission to read it.");
-
6803 }
-
6804 tfile.close();
+
6799 clocs_c.resize(5);
+
6800 clocs_c.at(0) = 0.f;
+
6801 clocs_c.at(1) = 0.4f;
+
6802 clocs_c.at(2) = 0.5f;
+
6803 clocs_c.at(3) = 0.6f;
+
6804 clocs_c.at(4) = 1.f;
6805
-
6806 // get file extension
-
6807 std::string file_ext = getFileExtension(texturefile);
-
6808
-
6809 // get file base/stem
-
6810 std::string file_base = getFileStem(texturefile);
-
6811
-
6812 std::vector<RGBcolor> color_table;
-
6813 color_table.resize(Ncolors);
-
6814
-
6815 std::vector<std::string> texture_filenames(Ncolors);
-
6816
-
6817 if (file_ext == "png" || file_ext == "PNG") {
-
6818
-
6819 std::vector<RGBAcolor> pixel_data;
-
6820 uint width, height;
-
6821 readPNG(texturefile, width, height, pixel_data);
-
6822
-
6823 for (int i = 0; i < Ncolors; i++) {
-
6824
-
6825 std::ostringstream filename;
-
6826 filename << "lib/images/colormap_" << file_base << "_" << std::setw(4) << std::setfill('0') << std::to_string(i) << ".png";
+
6806 }else if( colormap == "rainbow" ){
+
6807
+
6808 ctable_c.resize(4);
+
6809 ctable_c.at(0) = RGB::navy;
+
6810 ctable_c.at(1) = RGB::cyan;
+
6811 ctable_c.at(2) = RGB::yellow;
+
6812 ctable_c.at(3) = make_RGBcolor( 0.75f, 0.f, 0.f );
+
6813
+
6814 clocs_c.resize(4);
+
6815 clocs_c.at(0) = 0.f;
+
6816 clocs_c.at(1) = 0.3f;
+
6817 clocs_c.at(2) = 0.7f;
+
6818 clocs_c.at(3) = 1.f;
+
6819
+
6820 }else if( colormap == "parula" ){
+
6821
+
6822 ctable_c.resize(4);
+
6823 ctable_c.at(0) = RGB::navy;
+
6824 ctable_c.at(1) = make_RGBcolor(0,0.6,0.6);
+
6825 ctable_c.at(2) = RGB::goldenrod;
+
6826 ctable_c.at(3) = RGB::yellow;
6827
-
6828 texture_filenames.at(i) = filename.str();
-
6829
-
6830 RGBcolor color = colormap_data.at(i);
-
6831
-
6832 for (int row = 0; row < height; row++) {
-
6833 for (int col = 0; col < width; col++) {
-
6834 pixel_data.at(row * width + col) = make_RGBAcolor(color, pixel_data.at(row * width + col).a);
-
6835 }
-
6836 }
-
6837
-
6838 writePNG(filename.str(), width, height, pixel_data);
-
6839 }
-
6840
-
6841 }
-
6842
-
6843 return texture_filenames;
-
6844
-
6845}
-
6846
-
-
6847Context::~Context(){
-
6848
-
6849 for(auto & primitive : primitives){
-
6850 Primitive* prim = getPrimitivePointer_private(primitive.first);
-
6851 delete prim;
-
6852 }
+
6828 clocs_c.resize(4);
+
6829 clocs_c.at(0) = 0.f;
+
6830 clocs_c.at(1) = 0.4f;
+
6831 clocs_c.at(2) = 0.7f;
+
6832 clocs_c.at(3) = 1.f;
+
6833
+
6834 }else if( colormap == "gray" ) {
+
6835
+
6836 ctable_c.resize(2);
+
6837 ctable_c.at(0) = RGB::black;
+
6838 ctable_c.at(1) = RGB::white;
+
6839
+
6840 clocs_c.resize(2);
+
6841 clocs_c.at(0) = 0.f;
+
6842 clocs_c.at(1) = 1.f;
+
6843
+
6844 }else if( colormap == "green" ) {
+
6845
+
6846 ctable_c.resize(2);
+
6847 ctable_c.at(0) = RGB::black;
+
6848 ctable_c.at(1) = RGB::green;
+
6849
+
6850 clocs_c.resize(2);
+
6851 clocs_c.at(0) = 0.f;
+
6852 clocs_c.at(1) = 1.f;
6853
-
6854 for(auto & object : objects){
-
6855 CompoundObject* obj = getObjectPointer(object.first);
-
6856 delete obj;
-
6857 }
-
6858
-
6859}
-
-
6860
-
-
6861PrimitiveType Context::getPrimitiveType(uint UUID) const {
-
6862 return getPrimitivePointer_private(UUID)->getType();
-
6863}
-
-
6864
-
-
6865void Context::setPrimitiveParentObjectID(uint UUID, uint objID){
-
6866
-
6867 uint current_objID = getPrimitivePointer_private(UUID)->getParentObjectID();
-
6868 getPrimitivePointer_private(UUID)->setParentObjectID(objID);
-
6869
-
6870 if(current_objID != uint(0) && current_objID!=objID )
-
6871 {
+
6854 }else{
+
6855 helios_runtime_error("ERROR (Context::generateColormapTextures): Unknown colormap "+colormap+".");
+
6856 }
+
6857
+
6858 return generateColormap( ctable_c, clocs_c, Ncolors );
+
6859
+
6860}
+
6861
+
6862std::vector<std::string> Context::generateTexturesFromColormap( const std::string &texturefile, const std::vector<RGBcolor> &colormap_data ){
+
6863
+
6864 uint Ncolors = colormap_data.size();
+
6865
+
6866 // check that texture file exists
+
6867 std::ifstream tfile(texturefile);
+
6868 if (!tfile) {
+
6869 helios_runtime_error("ERROR (Context::generateTexturesFromColormap): Texture file " + texturefile + " does not exist, or you do not have permission to read it.");
+
6870 }
+
6871 tfile.close();
6872
-
6873 if( doesObjectExist(current_objID) ) {
-
6874 objects.at(current_objID)->deleteChildPrimitive(UUID);
-
6875
-
6876 if(getObjectPointer_private(current_objID)->getPrimitiveUUIDs().size() == 0)
-
6877 {
-
6878 CompoundObject* obj = objects.at(current_objID);
-
6879 delete obj;
-
6880 objects.erase(current_objID);
-
6881 markGeometryDirty();
-
6882 }
-
6883 }
-
6884 }
-
6885
-
6886}
-
-
6887
-
-
6888void Context::setPrimitiveParentObjectID(const std::vector<uint> &UUIDs, uint objID) {
-
6889 for( uint UUID : UUIDs){
-
6890 setPrimitiveParentObjectID(UUID, objID);
-
6891 }
-
6892}
-
-
6893
-
-
6894uint Context::getPrimitiveParentObjectID(uint UUID) const {
-
6895 return getPrimitivePointer_private(UUID)->getParentObjectID();
-
6896}
-
-
6897
+
6873 // get file extension
+
6874 std::string file_ext = getFileExtension(texturefile);
+
6875
+
6876 // get file base/stem
+
6877 std::string file_base = getFileStem(texturefile);
+
6878
+
6879 std::vector<RGBcolor> color_table;
+
6880 color_table.resize(Ncolors);
+
6881
+
6882 std::vector<std::string> texture_filenames(Ncolors);
+
6883
+
6884 if (file_ext == "png" || file_ext == "PNG") {
+
6885
+
6886 std::vector<RGBAcolor> pixel_data;
+
6887 uint width, height;
+
6888 readPNG(texturefile, width, height, pixel_data);
+
6889
+
6890 for (int i = 0; i < Ncolors; i++) {
+
6891
+
6892 std::ostringstream filename;
+
6893 filename << "lib/images/colormap_" << file_base << "_" << std::setw(4) << std::setfill('0') << std::to_string(i) << ".png";
+
6894
+
6895 texture_filenames.at(i) = filename.str();
+
6896
+
6897 RGBcolor color = colormap_data.at(i);
6898
-
-
6899std::vector<uint> Context::getUniquePrimitiveParentObjectIDs(const std::vector<uint> &UUIDs) const {
-
6900 return getUniquePrimitiveParentObjectIDs(UUIDs, false);
-
6901}
-
-
6902
-
6903
-
-
6904std::vector<uint> Context::getUniquePrimitiveParentObjectIDs(const std::vector<uint> &UUIDs, bool include_ObjID_zero) const {
-
6905
-
6906 //vector of parent object ID for each primitive
-
6907 std::vector<uint> primitiveObjIDs;
-
6908 primitiveObjIDs.resize(UUIDs.size());
-
6909 for(uint i=0;i<UUIDs.size();i++)
-
6910 {
-
6911 primitiveObjIDs.at(i) = getPrimitivePointer_private(UUIDs.at(i))->getParentObjectID();
-
6912 }
-
6913
-
6914 // sort
-
6915 std::sort(primitiveObjIDs.begin(), primitiveObjIDs.end());
-
6916
-
6917 // unique
-
6918 auto it = unique(primitiveObjIDs.begin(), primitiveObjIDs.end());
-
6919 primitiveObjIDs.resize(distance(primitiveObjIDs.begin(), it));
-
6920
-
6921 // remove object ID = 0 from the output if desired and it exisits
-
6922 if(include_ObjID_zero == false & primitiveObjIDs.at(0) == uint(0))
-
6923 {
-
6924 primitiveObjIDs.erase(primitiveObjIDs.begin());
-
6925 }
-
6926
-
6927 return primitiveObjIDs;
-
6928}
-
-
6929
-
-
6930float Context::getPrimitiveArea(uint UUID) const {
-
6931 return getPrimitivePointer_private(UUID)->getArea();
-
6932}
-
-
6933
-
-
6934void Context::getPrimitiveBoundingBox( uint UUID, vec3 &min_corner, vec3 &max_corner ) const{
-
6935 const std::vector<uint> UUIDs = {UUID};
-
6936 getPrimitiveBoundingBox( UUIDs, min_corner, max_corner );
-
6937}
-
-
6938
-
-
6939void Context::getPrimitiveBoundingBox( const std::vector<uint> &UUIDs, vec3 &min_corner, vec3 &max_corner ) const{
-
6940
-
6941
-
6942 uint p=0;
-
6943 for( uint UUID : UUIDs ){
-
6944
-
6945 if ( !doesPrimitiveExist(UUID) ){
-
6946 helios_runtime_error("ERROR (Context::getPrimitiveBoundingBox): Primitive with UUID of " + std::to_string(UUID) + " does not exist in the Context.");
-
6947 }
-
6948
-
6949 const std::vector<vec3> &vertices = getPrimitiveVertices(UUID);
-
6950
-
6951 if( p==0 ){
-
6952 min_corner = vertices.front();
-
6953 max_corner = min_corner;
-
6954 }
-
6955
-
6956 for ( const vec3 &vert : vertices ){
-
6957 if ( vert.x<min_corner.x ){
-
6958 min_corner.x = vert.x;
-
6959 }
-
6960 if ( vert.y<min_corner.y ){
-
6961 min_corner.y = vert.y;
-
6962 }
-
6963 if ( vert.z<min_corner.z ){
-
6964 min_corner.z = vert.z;
-
6965 }
-
6966 if ( vert.x>max_corner.x ){
-
6967 max_corner.x = vert.x;
-
6968 }
-
6969 if ( vert.y>max_corner.y ){
-
6970 max_corner.y = vert.y;
-
6971 }
-
6972 if ( vert.z>max_corner.z ){
-
6973 max_corner.z = vert.z;
-
6974 }
-
6975 }
-
6976
-
6977 p++;
-
6978 }
-
6979}
-
-
6980
-
-
6981helios::vec3 Context::getPrimitiveNormal(uint UUID) const {
-
6982 return getPrimitivePointer_private(UUID)->getNormal();
-
6983}
-
-
6984
-
-
6985void Context::getPrimitiveTransformationMatrix(uint UUID, float (&T)[16] ) const {
-
6986 getPrimitivePointer_private(UUID)->getTransformationMatrix( T );
-
6987}
-
-
6988
-
-
6989void Context::setPrimitiveTransformationMatrix(uint UUID, float (&T)[16] ) {
-
6990 getPrimitivePointer_private(UUID)->setTransformationMatrix(T);
-
6991}
-
-
6992
-
-
6993void Context::setPrimitiveTransformationMatrix(const std::vector<uint> &UUIDs, float (&T)[16] ) {
-
6994 for( uint UUID : UUIDs){
-
6995 getPrimitivePointer_private(UUID)->setTransformationMatrix(T);
-
6996 }
-
6997}
-
-
6998
-
-
6999std::vector<helios::vec3> Context::getPrimitiveVertices(uint UUID) const {
-
7000 return getPrimitivePointer_private(UUID)->getVertices();
-
7001}
-
-
7002
-
7003
-
-
7004helios::RGBcolor Context::getPrimitiveColor(uint UUID) const {
-
7005 return getPrimitivePointer_private(UUID)->getColor();
-
7006}
-
+
6899 for (int row = 0; row < height; row++) {
+
6900 for (int col = 0; col < width; col++) {
+
6901 pixel_data.at(row * width + col) = make_RGBAcolor(color, pixel_data.at(row * width + col).a);
+
6902 }
+
6903 }
+
6904
+
6905 writePNG(filename.str(), width, height, pixel_data);
+
6906 }
+
6907
+
6908 }
+
6909
+
6910 return texture_filenames;
+
6911
+
6912}
+
6913
+
+
6914Context::~Context(){
+
6915
+
6916 for(auto & primitive : primitives){
+
6917 Primitive* prim = getPrimitivePointer_private(primitive.first);
+
6918 delete prim;
+
6919 }
+
6920
+
6921 for(auto & object : objects){
+
6922 CompoundObject* obj = getObjectPointer(object.first);
+
6923 delete obj;
+
6924 }
+
6925
+
6926}
+
+
6927
+
+
6928PrimitiveType Context::getPrimitiveType(uint UUID) const {
+
6929 return getPrimitivePointer_private(UUID)->getType();
+
6930}
+
+
6931
+
+
6932void Context::setPrimitiveParentObjectID(uint UUID, uint objID){
+
6933
+
6934 uint current_objID = getPrimitivePointer_private(UUID)->getParentObjectID();
+
6935 getPrimitivePointer_private(UUID)->setParentObjectID(objID);
+
6936
+
6937 if(current_objID != uint(0) && current_objID!=objID )
+
6938 {
+
6939
+
6940 if( doesObjectExist(current_objID) ) {
+
6941 objects.at(current_objID)->deleteChildPrimitive(UUID);
+
6942
+
6943 if(getObjectPointer_private(current_objID)->getPrimitiveUUIDs().size() == 0)
+
6944 {
+
6945 CompoundObject* obj = objects.at(current_objID);
+
6946 delete obj;
+
6947 objects.erase(current_objID);
+
6948 markGeometryDirty();
+
6949 }
+
6950 }
+
6951 }
+
6952
+
6953}
+
+
6954
+
+
6955void Context::setPrimitiveParentObjectID(const std::vector<uint> &UUIDs, uint objID) {
+
6956 for( uint UUID : UUIDs){
+
6957 setPrimitiveParentObjectID(UUID, objID);
+
6958 }
+
6959}
+
+
6960
+
+
6961uint Context::getPrimitiveParentObjectID(uint UUID) const {
+
6962 return getPrimitivePointer_private(UUID)->getParentObjectID();
+
6963}
+
+
6964
+
6965
+
+
6966std::vector<uint> Context::getUniquePrimitiveParentObjectIDs(const std::vector<uint> &UUIDs) const {
+
6967 return getUniquePrimitiveParentObjectIDs(UUIDs, false);
+
6968}
+
+
6969
+
6970
+
+
6971std::vector<uint> Context::getUniquePrimitiveParentObjectIDs(const std::vector<uint> &UUIDs, bool include_ObjID_zero) const {
+
6972
+
6973 //vector of parent object ID for each primitive
+
6974 std::vector<uint> primitiveObjIDs;
+
6975 primitiveObjIDs.resize(UUIDs.size());
+
6976 for(uint i=0;i<UUIDs.size();i++)
+
6977 {
+
6978 primitiveObjIDs.at(i) = getPrimitivePointer_private(UUIDs.at(i))->getParentObjectID();
+
6979 }
+
6980
+
6981 // sort
+
6982 std::sort(primitiveObjIDs.begin(), primitiveObjIDs.end());
+
6983
+
6984 // unique
+
6985 auto it = unique(primitiveObjIDs.begin(), primitiveObjIDs.end());
+
6986 primitiveObjIDs.resize(distance(primitiveObjIDs.begin(), it));
+
6987
+
6988 // remove object ID = 0 from the output if desired and it exisits
+
6989 if(include_ObjID_zero == false & primitiveObjIDs.at(0) == uint(0))
+
6990 {
+
6991 primitiveObjIDs.erase(primitiveObjIDs.begin());
+
6992 }
+
6993
+
6994 return primitiveObjIDs;
+
6995}
+
+
6996
+
+
6997float Context::getPrimitiveArea(uint UUID) const {
+
6998 return getPrimitivePointer_private(UUID)->getArea();
+
6999}
+
+
7000
+
+
7001void Context::getPrimitiveBoundingBox( uint UUID, vec3 &min_corner, vec3 &max_corner ) const{
+
7002 const std::vector<uint> UUIDs = {UUID};
+
7003 getPrimitiveBoundingBox( UUIDs, min_corner, max_corner );
+
7004}
+
+
7005
+
+
7006void Context::getPrimitiveBoundingBox( const std::vector<uint> &UUIDs, vec3 &min_corner, vec3 &max_corner ) const{
7007
-
-
7008helios::RGBcolor Context::getPrimitiveColorRGB(uint UUID) const {
-
7009 return getPrimitivePointer_private(UUID)->getColorRGB();
-
7010}
-
+
7008
+
7009 uint p=0;
+
7010 for( uint UUID : UUIDs ){
7011
-
-
7012helios::RGBAcolor Context::getPrimitiveColorRGBA(uint UUID) const {
-
7013 return getPrimitivePointer_private(UUID)->getColorRGBA();
-
7014}
-
+
7012 if ( !doesPrimitiveExist(UUID) ){
+
7013 helios_runtime_error("ERROR (Context::getPrimitiveBoundingBox): Primitive with UUID of " + std::to_string(UUID) + " does not exist in the Context.");
+
7014 }
7015
-
-
7016void Context::setPrimitiveColor(uint UUID, const RGBcolor &color) {
-
7017 getPrimitivePointer_private(UUID)->setColor( color );
-
7018}
-
-
7019
-
-
7020void Context::setPrimitiveColor(const std::vector<uint> &UUIDs, const RGBcolor &color) {
-
7021 for( uint UUID : UUIDs){
-
7022 getPrimitivePointer_private(UUID)->setColor(color);
-
7023 }
-
7024}
-
-
7025
-
-
7026void Context::setPrimitiveColor(uint UUID, const RGBAcolor &color) {
-
7027 getPrimitivePointer_private(UUID)->setColor( color );
-
7028}
-
-
7029
-
-
7030void Context::setPrimitiveColor(const std::vector<uint> &UUIDs, const RGBAcolor &color) {
-
7031 for( uint UUID : UUIDs){
-
7032 getPrimitivePointer_private(UUID)->setColor(color);
-
7033 }
-
7034}
-
-
7035
-
-
7036std::string Context::getPrimitiveTextureFile( uint UUID ) const{
-
7037 return getPrimitivePointer_private(UUID)->getTextureFile();
-
7038}
-
-
7039
-
-
7040void Context::setPrimitiveTextureFile( uint UUID, const std::string &texturefile ){
-
7041 getPrimitivePointer_private(UUID)->setTextureFile(texturefile.c_str());
-
7042}
-
+
7016 const std::vector<vec3> &vertices = getPrimitiveVertices(UUID);
+
7017
+
7018 if( p==0 ){
+
7019 min_corner = vertices.front();
+
7020 max_corner = min_corner;
+
7021 }
+
7022
+
7023 for ( const vec3 &vert : vertices ){
+
7024 if ( vert.x<min_corner.x ){
+
7025 min_corner.x = vert.x;
+
7026 }
+
7027 if ( vert.y<min_corner.y ){
+
7028 min_corner.y = vert.y;
+
7029 }
+
7030 if ( vert.z<min_corner.z ){
+
7031 min_corner.z = vert.z;
+
7032 }
+
7033 if ( vert.x>max_corner.x ){
+
7034 max_corner.x = vert.x;
+
7035 }
+
7036 if ( vert.y>max_corner.y ){
+
7037 max_corner.y = vert.y;
+
7038 }
+
7039 if ( vert.z>max_corner.z ){
+
7040 max_corner.z = vert.z;
+
7041 }
+
7042 }
7043
-
-
7044helios::int2 Context::getPrimitiveTextureSize( uint UUID ) const{
-
7045 std::string texturefile = getPrimitivePointer_private(UUID)->getTextureFile();
-
7046 if( !texturefile.empty() && textures.find(texturefile)!=textures.end() ){
-
7047 return textures.at(texturefile).getImageResolution();
-
7048 }
-
7049 return make_int2(0,0);
+
7044 p++;
+
7045 }
+
7046}
+
+
7047
+
+
7048helios::vec3 Context::getPrimitiveNormal(uint UUID) const {
+
7049 return getPrimitivePointer_private(UUID)->getNormal();
7050}
7051
-
7052std::vector<helios::vec2> Context::getPrimitiveTextureUV( uint UUID ) const{
-
7053 return getPrimitivePointer_private(UUID)->getTextureUV();
+
7052void Context::getPrimitiveTransformationMatrix(uint UUID, float (&T)[16] ) const {
+
7053 getPrimitivePointer_private(UUID)->getTransformationMatrix( T );
7054}
7055
-
7056bool Context::primitiveTextureHasTransparencyChannel( uint UUID ) const{
-
7057 std::string texturefile = getPrimitivePointer_private(UUID)->getTextureFile();
-
7058 if( !texturefile.empty() && textures.find(texturefile)!=textures.end() ){
-
7059 return textures.at(texturefile).hasTransparencyChannel();
-
7060 }
-
7061 return false;
-
7062}
-
-
7063
-
-
7064const std::vector<std::vector<bool>> * Context::getPrimitiveTextureTransparencyData(uint UUID ) const{
-
7065 if(primitiveTextureHasTransparencyChannel(UUID) ){
-
7066 const std::vector<std::vector<bool> > *data = textures.at(getPrimitivePointer_private(UUID)->getTextureFile()).getTransparencyData();
-
7067 return data;
-
7068 }else{
-
7069 helios_runtime_error("ERROR (Context::getPrimitiveTransparencyData): Texture transparency data does not exist for primitive " + std::to_string(UUID) + ".");
-
7070 return 0;
-
7071 }
-
7072}
-
-
7073
-
-
7074void Context::overridePrimitiveTextureColor( uint UUID ){
-
7075 getPrimitivePointer_private(UUID)->overrideTextureColor();
-
7076}
-
-
7077
-
-
7078void Context::overridePrimitiveTextureColor( const std::vector<uint> &UUIDs ){
-
7079 for( uint UUID : UUIDs ) {
-
7080 getPrimitivePointer_private(UUID)->overrideTextureColor();
-
7081 }
-
7082}
-
-
7083
-
-
7084void Context::usePrimitiveTextureColor( uint UUID ){
-
7085 getPrimitivePointer_private(UUID)->useTextureColor();
-
7086}
-
-
7087
-
-
7088void Context::usePrimitiveTextureColor( const std::vector<uint> &UUIDs ){
-
7089 for( uint UUID : UUIDs ) {
-
7090 getPrimitivePointer_private(UUID)->useTextureColor();
-
7091 }
-
7092}
-
-
7093
-
-
7094bool Context::isPrimitiveTextureColorOverridden( uint UUID ) const{
-
7095 return getPrimitivePointer_private(UUID)->isTextureColorOverridden();
-
7096}
-
-
7097
-
-
7098float Context::getPrimitiveSolidFraction( uint UUID ) const{
-
7099 return getPrimitivePointer_private(UUID)->getSolidFraction();
-
7100}
-
-
7101
-
-
7102void Context::printPrimitiveInfo(uint UUID) const{
-
7103
-
7104 std::cout << "-------------------------------------------" << std::endl;
-
7105 std::cout << "Info for UUID " << UUID << std::endl;
-
7106 std::cout << "-------------------------------------------" << std::endl;
-
7107
-
7108 PrimitiveType type = getPrimitiveType(UUID);
-
7109 std::string stype;
-
7110 if( type == 0){
-
7111 stype = "PRIMITIVE_TYPE_PATCH";
-
7112 }else if(type == 1){
-
7113 stype = "PRIMITIVE_TYPE_TRIANGLE";
-
7114 }else if(type == 2){
-
7115 stype = "PRIMITIVE_TYPE_VOXEL";
-
7116 }
-
7117
-
7118 std::cout << "Type: " << stype << std::endl;
-
7119 std::cout << "Parent ObjID: " << getPrimitiveParentObjectID(UUID) << std::endl;
-
7120 std::cout << "Surface Area: " << getPrimitiveArea(UUID) << std::endl;
-
7121 std::cout << "Normal Vector: " << getPrimitiveNormal(UUID) << std::endl;
-
7122
-
7123 if(type == PRIMITIVE_TYPE_PATCH)
-
7124 {
-
7125 std::cout << "Patch Center: " << getPatchCenter(UUID) << std::endl;
-
7126 std::cout << "Patch Size: " << getPatchSize(UUID) << std::endl;
-
7127
-
7128 }else if(type == PRIMITIVE_TYPE_VOXEL){
-
7129
-
7130 std::cout << "Voxel Center: " << getVoxelCenter(UUID) << std::endl;
-
7131 std::cout << "Voxel Size: " << getVoxelSize(UUID) << std::endl;
-
7132 }
-
7133
-
7134 std::vector<vec3> primitive_vertices = getPrimitiveVertices(UUID);
-
7135 std::cout << "Vertices: " << std::endl;
-
7136 for(uint i=0; i<primitive_vertices.size();i++)
-
7137 {
-
7138 std::cout << " " << primitive_vertices.at(i) << std::endl;
-
7139 }
-
7140
-
7141 float T[16];
-
7142 getPrimitiveTransformationMatrix(UUID, T);
-
7143 std::cout << "Transform: " << std::endl;
-
7144 std::cout << " " << T[0] << " " << T[1] << " " << T[2] << " " << T[3] << std::endl;
-
7145 std::cout << " " << T[4] << " " << T[5] << " " << T[6] << " " << T[7] << std::endl;
-
7146 std::cout << " " << T[8] << " " << T[9] << " " << T[10] << " " << T[11] << std::endl;
-
7147 std::cout << " " << T[12] << " " << T[13] << " " << T[14] << " " << T[15] << std::endl;
-
7148
-
7149 std::cout << "Color: " << getPrimitiveColor(UUID) << std::endl;
-
7150 std::cout << "Texture File: " << getPrimitiveTextureFile(UUID) << std::endl;
-
7151 std::cout << "Texture Size: " << getPrimitiveTextureSize(UUID) << std::endl;
-
7152 std::cout << "Texture UV: " << std::endl;
-
7153 std::vector<vec2> uv = getPrimitiveTextureUV(UUID);
-
7154 for(uint i=0; i<uv.size();i++)
-
7155 {
-
7156 std::cout << " " << uv.at(i) << std::endl;
-
7157 }
-
7158
-
7159 std::cout << "Texture Transparency: " << primitiveTextureHasTransparencyChannel(UUID) << std::endl;
-
7160 std::cout << "Color Overridden: " << isPrimitiveTextureColorOverridden(UUID) << std::endl;
-
7161 std::cout << "Solid Fraction: " << getPrimitiveSolidFraction(UUID) << std::endl;
-
7162
-
7163
-
7164 std::cout << "Primitive Data: " << std::endl;
-
7165 // Primitive* pointer = getPrimitivePointer_private(UUID);
-
7166 std::vector<std::string> pd = listPrimitiveData(UUID);
-
7167 for(uint i=0; i<pd.size();i++)
-
7168 {
-
7169 uint dsize = getPrimitiveDataSize(UUID, pd.at(i).c_str());
-
7170 HeliosDataType dtype = getPrimitiveDataType(UUID, pd.at(i).c_str());
-
7171 std::string dstype;
-
7172
-
7173 if( dtype==HELIOS_TYPE_INT ){
-
7174 dstype = "HELIOS_TYPE_INT";
-
7175 }else if( dtype==HELIOS_TYPE_UINT ){
-
7176 dstype = "HELIOS_TYPE_UINT";
-
7177 }else if( dtype==HELIOS_TYPE_FLOAT ){
-
7178 dstype = "HELIOS_TYPE_FLOAT";
-
7179 }else if( dtype==HELIOS_TYPE_DOUBLE ){
-
7180 dstype = "HELIOS_TYPE_DOUBLE";
-
7181 }else if( dtype==HELIOS_TYPE_VEC2 ){
-
7182 dstype = "HELIOS_TYPE_VEC2";
-
7183 }else if( dtype==HELIOS_TYPE_VEC3 ){
-
7184 dstype = "HELIOS_TYPE_VEC3";
-
7185 }else if( dtype==HELIOS_TYPE_VEC4 ){
-
7186 dstype = "HELIOS_TYPE_VEC4";
-
7187 }else if( dtype==HELIOS_TYPE_INT2 ){
-
7188 dstype = "HELIOS_TYPE_INT2";
-
7189 }else if( dtype==HELIOS_TYPE_INT3 ){
-
7190 dstype = "HELIOS_TYPE_INT3";
-
7191 }else if( dtype==HELIOS_TYPE_INT4 ){
-
7192 dstype = "HELIOS_TYPE_INT4";
-
7193 }else if( dtype==HELIOS_TYPE_STRING ){
-
7194 dstype = "HELIOS_TYPE_STRING";
-
7195 }else{
-
7196 assert(false);
-
7197 }
-
7198
-
7199
-
7200 std::cout << " " << "[name: " << pd.at(i) << ", type: " << dstype << ", size: " << dsize << "]:" << std::endl;
-
7201
-
7202
-
7203 if( dtype==HELIOS_TYPE_INT ){
-
7204 std::vector<int> pdata;
-
7205 getPrimitiveData( UUID, pd.at(i).c_str(), pdata );
-
7206 for(uint j=0; j<dsize;j++)
-
7207 {
-
7208 if(j < 10){
-
7209 std::cout << " " << pdata.at(j) << std::endl;
-
7210 }else{
-
7211 std::cout << " ..." << std::endl;
-
7212 std::cout << " " << pdata.at(dsize-2) << std::endl;
-
7213 std::cout << " " << pdata.at(dsize-1) << std::endl;
-
7214 break;
-
7215 }
-
7216
-
7217 }
-
7218 }else if( dtype==HELIOS_TYPE_UINT ){
-
7219 std::vector<uint> pdata;
-
7220 getPrimitiveData( UUID, pd.at(i).c_str(), pdata );
-
7221 for(uint j=0; j<dsize;j++)
-
7222 {
-
7223 if(j < 10){
-
7224 std::cout << " " << pdata.at(j) << std::endl;
-
7225 }else{
-
7226 std::cout << " ..." << std::endl;
-
7227 std::cout << " " << pdata.at(dsize-2) << std::endl;
-
7228 std::cout << " " << pdata.at(dsize-1) << std::endl;
-
7229 break;
-
7230 }
-
7231
-
7232 }
-
7233 }else if( dtype==HELIOS_TYPE_FLOAT ){
-
7234 std::vector<float> pdata;
-
7235 getPrimitiveData( UUID, pd.at(i).c_str(), pdata );
-
7236 for(uint j=0; j<dsize;j++)
-
7237 {
-
7238 if(j < 10){
-
7239 std::cout << " " << pdata.at(j) << std::endl;
-
7240 }else{
-
7241 std::cout << " ..." << std::endl;
-
7242 std::cout << " " << pdata.at(dsize-2) << std::endl;
-
7243 std::cout << " " << pdata.at(dsize-1) << std::endl;
-
7244 break;
-
7245 }
-
7246
-
7247 }
-
7248 }else if( dtype==HELIOS_TYPE_DOUBLE ){
-
7249 std::vector<double> pdata;
-
7250 getPrimitiveData( UUID, pd.at(i).c_str(), pdata );
-
7251 for(uint j=0; j<dsize;j++)
-
7252 {
-
7253 if(j < 10){
-
7254 std::cout << " " << pdata.at(j) << std::endl;
-
7255 }else{
-
7256 std::cout << " ..." << std::endl;
-
7257 std::cout << " " << pdata.at(dsize-2) << std::endl;
-
7258 std::cout << " " << pdata.at(dsize-1) << std::endl;
-
7259 break;
-
7260 }
-
7261
-
7262 }
-
7263 }else if( dtype==HELIOS_TYPE_VEC2 ){
-
7264 std::vector<vec2> pdata;
-
7265 getPrimitiveData( UUID, pd.at(i).c_str(), pdata );
-
7266 for(uint j=0; j<dsize;j++)
-
7267 {
-
7268 if(j < 10){
-
7269 std::cout << " " << pdata.at(j) << std::endl;
-
7270 }else{
-
7271 std::cout << " ..." << std::endl;
-
7272 std::cout << " " << pdata.at(dsize-2) << std::endl;
-
7273 std::cout << " " << pdata.at(dsize-1) << std::endl;
-
7274 break;
-
7275 }
-
7276
-
7277 }
-
7278 }else if( dtype==HELIOS_TYPE_VEC3 ){
-
7279 std::vector<vec3> pdata;
-
7280 getPrimitiveData( UUID, pd.at(i).c_str(), pdata );
-
7281 for(uint j=0; j<dsize;j++)
-
7282 {
-
7283 if(j < 10){
-
7284 std::cout << " " << pdata.at(j) << std::endl;
-
7285 }else{
-
7286 std::cout << " ..." << std::endl;
-
7287 std::cout << " " << pdata.at(dsize-2) << std::endl;
-
7288 std::cout << " " << pdata.at(dsize-1) << std::endl;
-
7289 break;
-
7290 }
-
7291
-
7292 }
-
7293 }else if( dtype==HELIOS_TYPE_VEC4 ){
-
7294 std::vector<vec4> pdata;
-
7295 getPrimitiveData( UUID, pd.at(i).c_str(), pdata );
-
7296 for(uint j=0; j<dsize;j++)
-
7297 {
-
7298 if(j < 10){
-
7299 std::cout << " " << pdata.at(j) << std::endl;
-
7300 }else{
-
7301 std::cout << " ..." << std::endl;
-
7302 std::cout << " " << pdata.at(dsize-2) << std::endl;
-
7303 std::cout << " " << pdata.at(dsize-1) << std::endl;
-
7304 break;
-
7305 }
-
7306
-
7307 }
-
7308 }else if( dtype==HELIOS_TYPE_INT2 ){
-
7309 std::vector<int2> pdata;
-
7310 getPrimitiveData( UUID, pd.at(i).c_str(), pdata );
-
7311 for(uint j=0; j<dsize;j++)
-
7312 {
-
7313 if(j < 10){
-
7314 std::cout << " " << pdata.at(j) << std::endl;
-
7315 }else{
-
7316 std::cout << " ..." << std::endl;
-
7317 std::cout << " " << pdata.at(dsize-2) << std::endl;
-
7318 std::cout << " " << pdata.at(dsize-1) << std::endl;
-
7319 break;
-
7320 }
-
7321
-
7322 }
-
7323 }else if( dtype==HELIOS_TYPE_INT3 ){
-
7324 std::vector<int3> pdata;
-
7325 getPrimitiveData( UUID, pd.at(i).c_str(), pdata );
-
7326 for(uint j=0; j<dsize;j++)
-
7327 {
-
7328 if(j < 10){
-
7329 std::cout << " " << pdata.at(j) << std::endl;
-
7330 }else{
-
7331 std::cout << " ..." << std::endl;
-
7332 std::cout << " " << pdata.at(dsize-2) << std::endl;
-
7333 std::cout << " " << pdata.at(dsize-1) << std::endl;
-
7334 break;
-
7335 }
-
7336
-
7337 }
-
7338 }else if( dtype==HELIOS_TYPE_INT4 ){
-
7339 std::vector<int4> pdata;
-
7340 getPrimitiveData( UUID, pd.at(i).c_str(), pdata );
-
7341 for(uint j=0; j<dsize;j++)
-
7342 {
-
7343 if(j < 10){
-
7344 std::cout << " " << pdata.at(j) << std::endl;
-
7345 }else{
-
7346 std::cout << " ..." << std::endl;
-
7347 std::cout << " " << pdata.at(dsize-2) << std::endl;
-
7348 std::cout << " " << pdata.at(dsize-1) << std::endl;
-
7349 break;
-
7350 }
-
7351
-
7352 }
-
7353 }else if( dtype==HELIOS_TYPE_STRING ){
-
7354 std::vector<std::string> pdata;
-
7355 getPrimitiveData( UUID, pd.at(i).c_str(), pdata );
-
7356 for(uint j=0; j<dsize;j++)
-
7357 {
-
7358 if(j < 10){
-
7359 std::cout << " " << pdata.at(j) << std::endl;
-
7360 }else{
-
7361 std::cout << " ..." << std::endl;
-
7362 std::cout << " " << pdata.at(dsize-2) << std::endl;
-
7363 std::cout << " " << pdata.at(dsize-1) << std::endl;
-
7364 break;
-
7365 }
-
7366
-
7367 }
-
7368 }else{
-
7369 assert(false);
-
7370 }
-
7371
-
7372 }
-
7373 std::cout << "-------------------------------------------" << std::endl;
-
7374}
-
-
7375
-
-
7376void Context::printObjectInfo(uint ObjID) const{
-
7377
-
7378 std::cout << "-------------------------------------------" << std::endl;
-
7379 std::cout << "Info for ObjID " << ObjID << std::endl;
-
7380 std::cout << "-------------------------------------------" << std::endl;
-
7381
-
7382 ObjectType otype = getObjectType(ObjID);
-
7383 std::string ostype;
-
7384 if( otype == 0){
-
7385 ostype = "OBJECT_TYPE_TILE";
-
7386 }else if(otype == 1){
-
7387 ostype = "OBJECT_TYPE_SPHERE";
-
7388 }else if(otype == 2){
-
7389 ostype = "OBJECT_TYPE_TUBE";
-
7390 }else if(otype == 3){
-
7391 ostype = "OBJECT_TYPE_BOX";
-
7392 }else if(otype == 4){
-
7393 ostype = "OBJECT_TYPE_DISK";
-
7394 }else if(otype == 5){
-
7395 ostype = "OBJECT_TYPE_POLYMESH";
-
7396 }else if(otype == 6){
-
7397 ostype = "OBJECT_TYPE_CONE";
-
7398 }
-
7399
-
7400 std::cout << "Type: " << ostype << std::endl;
-
7401 std::cout << "Object Bounding Box Center: " << getObjectCenter(ObjID) << std::endl;
-
7402 std::cout << "One-sided Surface Area: " << getObjectArea(ObjID) << std::endl;
-
7403
-
7404 std::cout << "Primitive Count: " << getObjectPrimitiveCount(ObjID) << std::endl;
-
7405
-
7406 if(areObjectPrimitivesComplete(ObjID))
-
7407 {
-
7408 std::cout << "Object Primitives Complete" << std::endl;
-
7409 }else{
-
7410 std::cout << "Object Primitives Incomplete" << std::endl;
-
7411 }
-
7412
-
7413 std::cout << "Primitive UUIDs: " << std::endl;
-
7414 std::vector<uint> primitive_UUIDs = getObjectPrimitiveUUIDs(ObjID);
-
7415 for(uint i=0; i<primitive_UUIDs.size();i++)
-
7416 {
-
7417 if(i < 5){
-
7418 PrimitiveType ptype = getPrimitiveType(primitive_UUIDs.at(i));
-
7419 std::string pstype;
-
7420 if( ptype == 0){
-
7421 pstype = "PRIMITIVE_TYPE_PATCH";
-
7422 }else if(ptype == 1){
-
7423 pstype = "PRIMITIVE_TYPE_TRIANGLE";
-
7424 }
-
7425 std::cout << " " << primitive_UUIDs.at(i) << " (" << pstype << ")" << std::endl;
-
7426 }else{
-
7427 std::cout << " ..." << std::endl;
-
7428 PrimitiveType ptype = getPrimitiveType(primitive_UUIDs.at(primitive_UUIDs.size()-2));
-
7429 std::string pstype;
-
7430 if( ptype == 0){
-
7431 pstype = "PRIMITIVE_TYPE_PATCH";
-
7432 }else if(ptype == 1){
-
7433 pstype = "PRIMITIVE_TYPE_TRIANGLE";
+
7056void Context::setPrimitiveTransformationMatrix(uint UUID, float (&T)[16] ) {
+
7057 getPrimitivePointer_private(UUID)->setTransformationMatrix(T);
+
7058}
+
+
7059
+
+
7060void Context::setPrimitiveTransformationMatrix(const std::vector<uint> &UUIDs, float (&T)[16] ) {
+
7061 for( uint UUID : UUIDs){
+
7062 getPrimitivePointer_private(UUID)->setTransformationMatrix(T);
+
7063 }
+
7064}
+
+
7065
+
+
7066std::vector<helios::vec3> Context::getPrimitiveVertices(uint UUID) const {
+
7067 return getPrimitivePointer_private(UUID)->getVertices();
+
7068}
+
+
7069
+
7070
+
+
7071helios::RGBcolor Context::getPrimitiveColor(uint UUID) const {
+
7072 return getPrimitivePointer_private(UUID)->getColor();
+
7073}
+
+
7074
+
+
7075helios::RGBcolor Context::getPrimitiveColorRGB(uint UUID) const {
+
7076 return getPrimitivePointer_private(UUID)->getColorRGB();
+
7077}
+
+
7078
+
+
7079helios::RGBAcolor Context::getPrimitiveColorRGBA(uint UUID) const {
+
7080 return getPrimitivePointer_private(UUID)->getColorRGBA();
+
7081}
+
+
7082
+
+
7083void Context::setPrimitiveColor(uint UUID, const RGBcolor &color) {
+
7084 getPrimitivePointer_private(UUID)->setColor( color );
+
7085}
+
+
7086
+
+
7087void Context::setPrimitiveColor(const std::vector<uint> &UUIDs, const RGBcolor &color) {
+
7088 for( uint UUID : UUIDs){
+
7089 getPrimitivePointer_private(UUID)->setColor(color);
+
7090 }
+
7091}
+
+
7092
+
+
7093void Context::setPrimitiveColor(uint UUID, const RGBAcolor &color) {
+
7094 getPrimitivePointer_private(UUID)->setColor( color );
+
7095}
+
+
7096
+
+
7097void Context::setPrimitiveColor(const std::vector<uint> &UUIDs, const RGBAcolor &color) {
+
7098 for( uint UUID : UUIDs){
+
7099 getPrimitivePointer_private(UUID)->setColor(color);
+
7100 }
+
7101}
+
+
7102
+
+
7103std::string Context::getPrimitiveTextureFile( uint UUID ) const{
+
7104 return getPrimitivePointer_private(UUID)->getTextureFile();
+
7105}
+
+
7106
+
+
7107void Context::setPrimitiveTextureFile( uint UUID, const std::string &texturefile ){
+
7108 getPrimitivePointer_private(UUID)->setTextureFile(texturefile.c_str());
+
7109}
+
+
7110
+
+
7111helios::int2 Context::getPrimitiveTextureSize( uint UUID ) const{
+
7112 std::string texturefile = getPrimitivePointer_private(UUID)->getTextureFile();
+
7113 if( !texturefile.empty() && textures.find(texturefile)!=textures.end() ){
+
7114 return textures.at(texturefile).getImageResolution();
+
7115 }
+
7116 return make_int2(0,0);
+
7117}
+
+
7118
+
+
7119std::vector<helios::vec2> Context::getPrimitiveTextureUV( uint UUID ) const{
+
7120 return getPrimitivePointer_private(UUID)->getTextureUV();
+
7121}
+
+
7122
+
+
7123bool Context::primitiveTextureHasTransparencyChannel( uint UUID ) const{
+
7124 std::string texturefile = getPrimitivePointer_private(UUID)->getTextureFile();
+
7125 if( !texturefile.empty() && textures.find(texturefile)!=textures.end() ){
+
7126 return textures.at(texturefile).hasTransparencyChannel();
+
7127 }
+
7128 return false;
+
7129}
+
+
7130
+
+
7131const std::vector<std::vector<bool>> * Context::getPrimitiveTextureTransparencyData(uint UUID ) const{
+
7132 if(primitiveTextureHasTransparencyChannel(UUID) ){
+
7133 const std::vector<std::vector<bool> > *data = textures.at(getPrimitivePointer_private(UUID)->getTextureFile()).getTransparencyData();
+
7134 return data;
+
7135 }else{
+
7136 helios_runtime_error("ERROR (Context::getPrimitiveTransparencyData): Texture transparency data does not exist for primitive " + std::to_string(UUID) + ".");
+
7137 return 0;
+
7138 }
+
7139}
+
+
7140
+
+
7141void Context::overridePrimitiveTextureColor( uint UUID ){
+
7142 getPrimitivePointer_private(UUID)->overrideTextureColor();
+
7143}
+
+
7144
+
+
7145void Context::overridePrimitiveTextureColor( const std::vector<uint> &UUIDs ){
+
7146 for( uint UUID : UUIDs ) {
+
7147 getPrimitivePointer_private(UUID)->overrideTextureColor();
+
7148 }
+
7149}
+
+
7150
+
+
7151void Context::usePrimitiveTextureColor( uint UUID ){
+
7152 getPrimitivePointer_private(UUID)->useTextureColor();
+
7153}
+
+
7154
+
+
7155void Context::usePrimitiveTextureColor( const std::vector<uint> &UUIDs ){
+
7156 for( uint UUID : UUIDs ) {
+
7157 getPrimitivePointer_private(UUID)->useTextureColor();
+
7158 }
+
7159}
+
+
7160
+
+
7161bool Context::isPrimitiveTextureColorOverridden( uint UUID ) const{
+
7162 return getPrimitivePointer_private(UUID)->isTextureColorOverridden();
+
7163}
+
+
7164
+
+
7165float Context::getPrimitiveSolidFraction( uint UUID ) const{
+
7166 return getPrimitivePointer_private(UUID)->getSolidFraction();
+
7167}
+
+
7168
+
+
7169void Context::printPrimitiveInfo(uint UUID) const{
+
7170
+
7171 std::cout << "-------------------------------------------" << std::endl;
+
7172 std::cout << "Info for UUID " << UUID << std::endl;
+
7173 std::cout << "-------------------------------------------" << std::endl;
+
7174
+
7175 PrimitiveType type = getPrimitiveType(UUID);
+
7176 std::string stype;
+
7177 if( type == 0){
+
7178 stype = "PRIMITIVE_TYPE_PATCH";
+
7179 }else if(type == 1){
+
7180 stype = "PRIMITIVE_TYPE_TRIANGLE";
+
7181 }else if(type == 2){
+
7182 stype = "PRIMITIVE_TYPE_VOXEL";
+
7183 }
+
7184
+
7185 std::cout << "Type: " << stype << std::endl;
+
7186 std::cout << "Parent ObjID: " << getPrimitiveParentObjectID(UUID) << std::endl;
+
7187 std::cout << "Surface Area: " << getPrimitiveArea(UUID) << std::endl;
+
7188 std::cout << "Normal Vector: " << getPrimitiveNormal(UUID) << std::endl;
+
7189
+
7190 if(type == PRIMITIVE_TYPE_PATCH)
+
7191 {
+
7192 std::cout << "Patch Center: " << getPatchCenter(UUID) << std::endl;
+
7193 std::cout << "Patch Size: " << getPatchSize(UUID) << std::endl;
+
7194
+
7195 }else if(type == PRIMITIVE_TYPE_VOXEL){
+
7196
+
7197 std::cout << "Voxel Center: " << getVoxelCenter(UUID) << std::endl;
+
7198 std::cout << "Voxel Size: " << getVoxelSize(UUID) << std::endl;
+
7199 }
+
7200
+
7201 std::vector<vec3> primitive_vertices = getPrimitiveVertices(UUID);
+
7202 std::cout << "Vertices: " << std::endl;
+
7203 for(uint i=0; i<primitive_vertices.size();i++)
+
7204 {
+
7205 std::cout << " " << primitive_vertices.at(i) << std::endl;
+
7206 }
+
7207
+
7208 float T[16];
+
7209 getPrimitiveTransformationMatrix(UUID, T);
+
7210 std::cout << "Transform: " << std::endl;
+
7211 std::cout << " " << T[0] << " " << T[1] << " " << T[2] << " " << T[3] << std::endl;
+
7212 std::cout << " " << T[4] << " " << T[5] << " " << T[6] << " " << T[7] << std::endl;
+
7213 std::cout << " " << T[8] << " " << T[9] << " " << T[10] << " " << T[11] << std::endl;
+
7214 std::cout << " " << T[12] << " " << T[13] << " " << T[14] << " " << T[15] << std::endl;
+
7215
+
7216 std::cout << "Color: " << getPrimitiveColor(UUID) << std::endl;
+
7217 std::cout << "Texture File: " << getPrimitiveTextureFile(UUID) << std::endl;
+
7218 std::cout << "Texture Size: " << getPrimitiveTextureSize(UUID) << std::endl;
+
7219 std::cout << "Texture UV: " << std::endl;
+
7220 std::vector<vec2> uv = getPrimitiveTextureUV(UUID);
+
7221 for(uint i=0; i<uv.size();i++)
+
7222 {
+
7223 std::cout << " " << uv.at(i) << std::endl;
+
7224 }
+
7225
+
7226 std::cout << "Texture Transparency: " << primitiveTextureHasTransparencyChannel(UUID) << std::endl;
+
7227 std::cout << "Color Overridden: " << isPrimitiveTextureColorOverridden(UUID) << std::endl;
+
7228 std::cout << "Solid Fraction: " << getPrimitiveSolidFraction(UUID) << std::endl;
+
7229
+
7230
+
7231 std::cout << "Primitive Data: " << std::endl;
+
7232 // Primitive* pointer = getPrimitivePointer_private(UUID);
+
7233 std::vector<std::string> pd = listPrimitiveData(UUID);
+
7234 for(uint i=0; i<pd.size();i++)
+
7235 {
+
7236 uint dsize = getPrimitiveDataSize(UUID, pd.at(i).c_str());
+
7237 HeliosDataType dtype = getPrimitiveDataType(UUID, pd.at(i).c_str());
+
7238 std::string dstype;
+
7239
+
7240 if( dtype==HELIOS_TYPE_INT ){
+
7241 dstype = "HELIOS_TYPE_INT";
+
7242 }else if( dtype==HELIOS_TYPE_UINT ){
+
7243 dstype = "HELIOS_TYPE_UINT";
+
7244 }else if( dtype==HELIOS_TYPE_FLOAT ){
+
7245 dstype = "HELIOS_TYPE_FLOAT";
+
7246 }else if( dtype==HELIOS_TYPE_DOUBLE ){
+
7247 dstype = "HELIOS_TYPE_DOUBLE";
+
7248 }else if( dtype==HELIOS_TYPE_VEC2 ){
+
7249 dstype = "HELIOS_TYPE_VEC2";
+
7250 }else if( dtype==HELIOS_TYPE_VEC3 ){
+
7251 dstype = "HELIOS_TYPE_VEC3";
+
7252 }else if( dtype==HELIOS_TYPE_VEC4 ){
+
7253 dstype = "HELIOS_TYPE_VEC4";
+
7254 }else if( dtype==HELIOS_TYPE_INT2 ){
+
7255 dstype = "HELIOS_TYPE_INT2";
+
7256 }else if( dtype==HELIOS_TYPE_INT3 ){
+
7257 dstype = "HELIOS_TYPE_INT3";
+
7258 }else if( dtype==HELIOS_TYPE_INT4 ){
+
7259 dstype = "HELIOS_TYPE_INT4";
+
7260 }else if( dtype==HELIOS_TYPE_STRING ){
+
7261 dstype = "HELIOS_TYPE_STRING";
+
7262 }else{
+
7263 assert(false);
+
7264 }
+
7265
+
7266
+
7267 std::cout << " " << "[name: " << pd.at(i) << ", type: " << dstype << ", size: " << dsize << "]:" << std::endl;
+
7268
+
7269
+
7270 if( dtype==HELIOS_TYPE_INT ){
+
7271 std::vector<int> pdata;
+
7272 getPrimitiveData( UUID, pd.at(i).c_str(), pdata );
+
7273 for(uint j=0; j<dsize;j++)
+
7274 {
+
7275 if(j < 10){
+
7276 std::cout << " " << pdata.at(j) << std::endl;
+
7277 }else{
+
7278 std::cout << " ..." << std::endl;
+
7279 std::cout << " " << pdata.at(dsize-2) << std::endl;
+
7280 std::cout << " " << pdata.at(dsize-1) << std::endl;
+
7281 break;
+
7282 }
+
7283
+
7284 }
+
7285 }else if( dtype==HELIOS_TYPE_UINT ){
+
7286 std::vector<uint> pdata;
+
7287 getPrimitiveData( UUID, pd.at(i).c_str(), pdata );
+
7288 for(uint j=0; j<dsize;j++)
+
7289 {
+
7290 if(j < 10){
+
7291 std::cout << " " << pdata.at(j) << std::endl;
+
7292 }else{
+
7293 std::cout << " ..." << std::endl;
+
7294 std::cout << " " << pdata.at(dsize-2) << std::endl;
+
7295 std::cout << " " << pdata.at(dsize-1) << std::endl;
+
7296 break;
+
7297 }
+
7298
+
7299 }
+
7300 }else if( dtype==HELIOS_TYPE_FLOAT ){
+
7301 std::vector<float> pdata;
+
7302 getPrimitiveData( UUID, pd.at(i).c_str(), pdata );
+
7303 for(uint j=0; j<dsize;j++)
+
7304 {
+
7305 if(j < 10){
+
7306 std::cout << " " << pdata.at(j) << std::endl;
+
7307 }else{
+
7308 std::cout << " ..." << std::endl;
+
7309 std::cout << " " << pdata.at(dsize-2) << std::endl;
+
7310 std::cout << " " << pdata.at(dsize-1) << std::endl;
+
7311 break;
+
7312 }
+
7313
+
7314 }
+
7315 }else if( dtype==HELIOS_TYPE_DOUBLE ){
+
7316 std::vector<double> pdata;
+
7317 getPrimitiveData( UUID, pd.at(i).c_str(), pdata );
+
7318 for(uint j=0; j<dsize;j++)
+
7319 {
+
7320 if(j < 10){
+
7321 std::cout << " " << pdata.at(j) << std::endl;
+
7322 }else{
+
7323 std::cout << " ..." << std::endl;
+
7324 std::cout << " " << pdata.at(dsize-2) << std::endl;
+
7325 std::cout << " " << pdata.at(dsize-1) << std::endl;
+
7326 break;
+
7327 }
+
7328
+
7329 }
+
7330 }else if( dtype==HELIOS_TYPE_VEC2 ){
+
7331 std::vector<vec2> pdata;
+
7332 getPrimitiveData( UUID, pd.at(i).c_str(), pdata );
+
7333 for(uint j=0; j<dsize;j++)
+
7334 {
+
7335 if(j < 10){
+
7336 std::cout << " " << pdata.at(j) << std::endl;
+
7337 }else{
+
7338 std::cout << " ..." << std::endl;
+
7339 std::cout << " " << pdata.at(dsize-2) << std::endl;
+
7340 std::cout << " " << pdata.at(dsize-1) << std::endl;
+
7341 break;
+
7342 }
+
7343
+
7344 }
+
7345 }else if( dtype==HELIOS_TYPE_VEC3 ){
+
7346 std::vector<vec3> pdata;
+
7347 getPrimitiveData( UUID, pd.at(i).c_str(), pdata );
+
7348 for(uint j=0; j<dsize;j++)
+
7349 {
+
7350 if(j < 10){
+
7351 std::cout << " " << pdata.at(j) << std::endl;
+
7352 }else{
+
7353 std::cout << " ..." << std::endl;
+
7354 std::cout << " " << pdata.at(dsize-2) << std::endl;
+
7355 std::cout << " " << pdata.at(dsize-1) << std::endl;
+
7356 break;
+
7357 }
+
7358
+
7359 }
+
7360 }else if( dtype==HELIOS_TYPE_VEC4 ){
+
7361 std::vector<vec4> pdata;
+
7362 getPrimitiveData( UUID, pd.at(i).c_str(), pdata );
+
7363 for(uint j=0; j<dsize;j++)
+
7364 {
+
7365 if(j < 10){
+
7366 std::cout << " " << pdata.at(j) << std::endl;
+
7367 }else{
+
7368 std::cout << " ..." << std::endl;
+
7369 std::cout << " " << pdata.at(dsize-2) << std::endl;
+
7370 std::cout << " " << pdata.at(dsize-1) << std::endl;
+
7371 break;
+
7372 }
+
7373
+
7374 }
+
7375 }else if( dtype==HELIOS_TYPE_INT2 ){
+
7376 std::vector<int2> pdata;
+
7377 getPrimitiveData( UUID, pd.at(i).c_str(), pdata );
+
7378 for(uint j=0; j<dsize;j++)
+
7379 {
+
7380 if(j < 10){
+
7381 std::cout << " " << pdata.at(j) << std::endl;
+
7382 }else{
+
7383 std::cout << " ..." << std::endl;
+
7384 std::cout << " " << pdata.at(dsize-2) << std::endl;
+
7385 std::cout << " " << pdata.at(dsize-1) << std::endl;
+
7386 break;
+
7387 }
+
7388
+
7389 }
+
7390 }else if( dtype==HELIOS_TYPE_INT3 ){
+
7391 std::vector<int3> pdata;
+
7392 getPrimitiveData( UUID, pd.at(i).c_str(), pdata );
+
7393 for(uint j=0; j<dsize;j++)
+
7394 {
+
7395 if(j < 10){
+
7396 std::cout << " " << pdata.at(j) << std::endl;
+
7397 }else{
+
7398 std::cout << " ..." << std::endl;
+
7399 std::cout << " " << pdata.at(dsize-2) << std::endl;
+
7400 std::cout << " " << pdata.at(dsize-1) << std::endl;
+
7401 break;
+
7402 }
+
7403
+
7404 }
+
7405 }else if( dtype==HELIOS_TYPE_INT4 ){
+
7406 std::vector<int4> pdata;
+
7407 getPrimitiveData( UUID, pd.at(i).c_str(), pdata );
+
7408 for(uint j=0; j<dsize;j++)
+
7409 {
+
7410 if(j < 10){
+
7411 std::cout << " " << pdata.at(j) << std::endl;
+
7412 }else{
+
7413 std::cout << " ..." << std::endl;
+
7414 std::cout << " " << pdata.at(dsize-2) << std::endl;
+
7415 std::cout << " " << pdata.at(dsize-1) << std::endl;
+
7416 break;
+
7417 }
+
7418
+
7419 }
+
7420 }else if( dtype==HELIOS_TYPE_STRING ){
+
7421 std::vector<std::string> pdata;
+
7422 getPrimitiveData( UUID, pd.at(i).c_str(), pdata );
+
7423 for(uint j=0; j<dsize;j++)
+
7424 {
+
7425 if(j < 10){
+
7426 std::cout << " " << pdata.at(j) << std::endl;
+
7427 }else{
+
7428 std::cout << " ..." << std::endl;
+
7429 std::cout << " " << pdata.at(dsize-2) << std::endl;
+
7430 std::cout << " " << pdata.at(dsize-1) << std::endl;
+
7431 break;
+
7432 }
+
7433
7434 }
-
7435 std::cout << " " << primitive_UUIDs.at(primitive_UUIDs.size()-2) << " (" << pstype << ")" << std::endl;
-
7436 ptype = getPrimitiveType(primitive_UUIDs.at(primitive_UUIDs.size()-1));
-
7437 if( ptype == 0){
-
7438 pstype = "PRIMITIVE_TYPE_PATCH";
-
7439 }else if(ptype == 1){
-
7440 pstype = "PRIMITIVE_TYPE_TRIANGLE";
-
7441 }
-
7442 std::cout << " " << primitive_UUIDs.at(primitive_UUIDs.size()-1) << " (" << pstype << ")" << std::endl;
-
7443 break;
-
7444 }
-
7445 }
-
7446
-
7447 if(otype == OBJECT_TYPE_TILE)
-
7448 {
-
7449 std::cout << "Tile Center: " << getTileObjectCenter(ObjID) << std::endl;
-
7450 std::cout << "Tile Size: " << getTileObjectSize(ObjID) << std::endl;
-
7451 std::cout << "Tile Subdivision Count: " << getTileObjectSubdivisionCount(ObjID) << std::endl;
-
7452 std::cout << "Tile Normal: " << getTileObjectNormal(ObjID) << std::endl;
-
7453
-
7454 std::cout << "Tile Texture UV: " << std::endl;
-
7455 std::vector<vec2> uv = getTileObjectTextureUV(ObjID);
-
7456 for(uint i=0; i<uv.size();i++)
-
7457 {
-
7458 std::cout << " " << uv.at(i) << std::endl;
-
7459 }
-
7460
-
7461 std::cout << "Tile Vertices: " << std::endl;
-
7462 std::vector<vec3> primitive_vertices = getTileObjectVertices(ObjID);
-
7463 for(uint i=0; i<primitive_vertices.size();i++)
-
7464 {
-
7465 std::cout << " " << primitive_vertices.at(i) << std::endl;
-
7466 }
-
7467
-
7468
-
7469 }else if(otype == OBJECT_TYPE_SPHERE){
-
7470
-
7471 std::cout << "Sphere Center: " << getSphereObjectCenter(ObjID) << std::endl;
-
7472 std::cout << "Sphere Radius: " << getSphereObjectRadius(ObjID) << std::endl;
-
7473 std::cout << "Sphere Subdivision Count: " << getSphereObjectSubdivisionCount(ObjID) << std::endl;
-
7474
-
7475 }else if(otype == OBJECT_TYPE_TUBE){
-
7476
-
7477 std::cout << "Tube Subdivision Count: " << getTubeObjectSubdivisionCount(ObjID) << std::endl;
-
7478 std::cout << "Tube Nodes: " << std::endl;
-
7479 std::vector<vec3> nodes = getTubeObjectNodes(ObjID);
-
7480 for(uint i=0; i<nodes.size();i++)
-
7481 {
-
7482 if(i < 10){
-
7483 std::cout << " " << nodes.at(i) << std::endl;
-
7484 }else{
-
7485 std::cout << " ..." << std::endl;
-
7486 std::cout << " " << nodes.at(nodes.size()-2) << std::endl;
-
7487 std::cout << " " << nodes.at(nodes.size()-1) << std::endl;
-
7488 break;
-
7489 }
-
7490 }
-
7491 std::cout << "Tube Node Radii: " << std::endl;
-
7492 std::vector<float> noderadii = getTubeObjectNodeRadii(ObjID);
-
7493 for(uint i=0; i<noderadii.size();i++)
-
7494 {
-
7495 if(i < 10){
-
7496 std::cout << " " << noderadii.at(i) << std::endl;
-
7497 }else{
-
7498 std::cout << " ..." << std::endl;
-
7499 std::cout << " " << noderadii.at(noderadii.size()-2) << std::endl;
-
7500 std::cout << " " << noderadii.at(noderadii.size()-1) << std::endl;
-
7501 break;
-
7502 }
-
7503 }
-
7504 std::cout << "Tube Node Colors: " << std::endl;
-
7505 std::vector<helios::RGBcolor> nodecolors = getTubeObjectNodeColors(ObjID);
-
7506 for(uint i=0; i<nodecolors.size();i++)
-
7507 {
-
7508 if(i < 10){
-
7509 std::cout << " " << nodecolors.at(i) << std::endl;
-
7510 }else{
-
7511 std::cout << " ..." << std::endl;
-
7512 std::cout << " " << nodecolors.at(nodecolors.size()-2) << std::endl;
-
7513 std::cout << " " << nodecolors.at(nodecolors.size()-1) << std::endl;
-
7514 break;
-
7515 }
-
7516 }
-
7517
-
7518 }else if(otype == OBJECT_TYPE_BOX){
-
7519
-
7520 std::cout << "Box Center: " << getBoxObjectCenter(ObjID) << std::endl;
-
7521 std::cout << "Box Size: " << getBoxObjectSize(ObjID) << std::endl;
-
7522 std::cout << "Box Subdivision Count: " << getBoxObjectSubdivisionCount(ObjID) << std::endl;
-
7523
-
7524 }else if(otype == OBJECT_TYPE_DISK){
-
7525
-
7526 std::cout << "Disk Center: " << getDiskObjectCenter(ObjID) << std::endl;
-
7527 std::cout << "Disk Size: " << getDiskObjectSize(ObjID) << std::endl;
-
7528 std::cout << "Disk Subdivision Count: " << getDiskObjectSubdivisionCount(ObjID) << std::endl;
-
7529
-
7530 // }else if(type == OBJECT_TYPE_POLYMESH){
-
7531 // nothing for now
-
7532
-
7533 }else if(otype == OBJECT_TYPE_CONE){
+
7435 }else{
+
7436 assert(false);
+
7437 }
+
7438
+
7439 }
+
7440 std::cout << "-------------------------------------------" << std::endl;
+
7441}
+
+
7442
+
+
7443void Context::printObjectInfo(uint ObjID) const{
+
7444
+
7445 std::cout << "-------------------------------------------" << std::endl;
+
7446 std::cout << "Info for ObjID " << ObjID << std::endl;
+
7447 std::cout << "-------------------------------------------" << std::endl;
+
7448
+
7449 ObjectType otype = getObjectType(ObjID);
+
7450 std::string ostype;
+
7451 if( otype == 0){
+
7452 ostype = "OBJECT_TYPE_TILE";
+
7453 }else if(otype == 1){
+
7454 ostype = "OBJECT_TYPE_SPHERE";
+
7455 }else if(otype == 2){
+
7456 ostype = "OBJECT_TYPE_TUBE";
+
7457 }else if(otype == 3){
+
7458 ostype = "OBJECT_TYPE_BOX";
+
7459 }else if(otype == 4){
+
7460 ostype = "OBJECT_TYPE_DISK";
+
7461 }else if(otype == 5){
+
7462 ostype = "OBJECT_TYPE_POLYMESH";
+
7463 }else if(otype == 6){
+
7464 ostype = "OBJECT_TYPE_CONE";
+
7465 }
+
7466
+
7467 std::cout << "Type: " << ostype << std::endl;
+
7468 std::cout << "Object Bounding Box Center: " << getObjectCenter(ObjID) << std::endl;
+
7469 std::cout << "One-sided Surface Area: " << getObjectArea(ObjID) << std::endl;
+
7470
+
7471 std::cout << "Primitive Count: " << getObjectPrimitiveCount(ObjID) << std::endl;
+
7472
+
7473 if(areObjectPrimitivesComplete(ObjID))
+
7474 {
+
7475 std::cout << "Object Primitives Complete" << std::endl;
+
7476 }else{
+
7477 std::cout << "Object Primitives Incomplete" << std::endl;
+
7478 }
+
7479
+
7480 std::cout << "Primitive UUIDs: " << std::endl;
+
7481 std::vector<uint> primitive_UUIDs = getObjectPrimitiveUUIDs(ObjID);
+
7482 for(uint i=0; i<primitive_UUIDs.size();i++)
+
7483 {
+
7484 if(i < 5){
+
7485 PrimitiveType ptype = getPrimitiveType(primitive_UUIDs.at(i));
+
7486 std::string pstype;
+
7487 if( ptype == 0){
+
7488 pstype = "PRIMITIVE_TYPE_PATCH";
+
7489 }else if(ptype == 1){
+
7490 pstype = "PRIMITIVE_TYPE_TRIANGLE";
+
7491 }
+
7492 std::cout << " " << primitive_UUIDs.at(i) << " (" << pstype << ")" << std::endl;
+
7493 }else{
+
7494 std::cout << " ..." << std::endl;
+
7495 PrimitiveType ptype = getPrimitiveType(primitive_UUIDs.at(primitive_UUIDs.size()-2));
+
7496 std::string pstype;
+
7497 if( ptype == 0){
+
7498 pstype = "PRIMITIVE_TYPE_PATCH";
+
7499 }else if(ptype == 1){
+
7500 pstype = "PRIMITIVE_TYPE_TRIANGLE";
+
7501 }
+
7502 std::cout << " " << primitive_UUIDs.at(primitive_UUIDs.size()-2) << " (" << pstype << ")" << std::endl;
+
7503 ptype = getPrimitiveType(primitive_UUIDs.at(primitive_UUIDs.size()-1));
+
7504 if( ptype == 0){
+
7505 pstype = "PRIMITIVE_TYPE_PATCH";
+
7506 }else if(ptype == 1){
+
7507 pstype = "PRIMITIVE_TYPE_TRIANGLE";
+
7508 }
+
7509 std::cout << " " << primitive_UUIDs.at(primitive_UUIDs.size()-1) << " (" << pstype << ")" << std::endl;
+
7510 break;
+
7511 }
+
7512 }
+
7513
+
7514 if(otype == OBJECT_TYPE_TILE)
+
7515 {
+
7516 std::cout << "Tile Center: " << getTileObjectCenter(ObjID) << std::endl;
+
7517 std::cout << "Tile Size: " << getTileObjectSize(ObjID) << std::endl;
+
7518 std::cout << "Tile Subdivision Count: " << getTileObjectSubdivisionCount(ObjID) << std::endl;
+
7519 std::cout << "Tile Normal: " << getTileObjectNormal(ObjID) << std::endl;
+
7520
+
7521 std::cout << "Tile Texture UV: " << std::endl;
+
7522 std::vector<vec2> uv = getTileObjectTextureUV(ObjID);
+
7523 for(uint i=0; i<uv.size();i++)
+
7524 {
+
7525 std::cout << " " << uv.at(i) << std::endl;
+
7526 }
+
7527
+
7528 std::cout << "Tile Vertices: " << std::endl;
+
7529 std::vector<vec3> primitive_vertices = getTileObjectVertices(ObjID);
+
7530 for(uint i=0; i<primitive_vertices.size();i++)
+
7531 {
+
7532 std::cout << " " << primitive_vertices.at(i) << std::endl;
+
7533 }
7534
-
7535 std::cout << "Cone Length: " << getConeObjectLength(ObjID) << std::endl;
-
7536 std::cout << "Cone Axis Unit Vector: " << getConeObjectAxisUnitVector(ObjID) << std::endl;
-
7537 std::cout << "Cone Subdivision Count: " << getConeObjectSubdivisionCount(ObjID) << std::endl;
-
7538 std::cout << "Cone Nodes: " << std::endl;
-
7539 std::vector<vec3> nodes = getConeObjectNodes(ObjID);
-
7540 for(uint i=0; i<nodes.size();i++)
-
7541 {
-
7542 std::cout << " " << nodes.at(i) << std::endl;
-
7543 }
-
7544 std::cout << "Cone Node Radii: " << std::endl;
-
7545 std::vector<float> noderadii = getConeObjectNodeRadii(ObjID);
-
7546 for(uint i=0; i<noderadii.size();i++)
-
7547 {
-
7548 std::cout << " " << noderadii.at(i) << std::endl;
-
7549 }
-
7550 }
-
7551
-
7552
-
7553 float T[16];
-
7554 getObjectTransformationMatrix(ObjID, T);
-
7555 std::cout << "Transform: " << std::endl;
-
7556 std::cout << " " << T[0] << " " << T[1] << " " << T[2] << " " << T[3] << std::endl;
-
7557 std::cout << " " << T[4] << " " << T[5] << " " << T[6] << " " << T[7] << std::endl;
-
7558 std::cout << " " << T[8] << " " << T[9] << " " << T[10] << " " << T[11] << std::endl;
-
7559 std::cout << " " << T[12] << " " << T[13] << " " << T[14] << " " << T[15] << std::endl;
-
7560
-
7561 std::cout << "Texture File: " << getObjectTextureFile(ObjID) << std::endl;
-
7562
-
7563 std::cout << "Object Data: " << std::endl;
-
7564 // Primitive* pointer = getPrimitivePointer_private(ObjID);
-
7565 std::vector<std::string> pd = listObjectData(ObjID);
-
7566 for(uint i=0; i<pd.size();i++)
-
7567 {
-
7568 uint dsize = getObjectDataSize(ObjID, pd.at(i).c_str());
-
7569 HeliosDataType dtype = getObjectDataType(ObjID, pd.at(i).c_str());
-
7570 std::string dstype;
-
7571
-
7572 if( dtype==HELIOS_TYPE_INT ){
-
7573 dstype = "HELIOS_TYPE_INT";
-
7574 }else if( dtype==HELIOS_TYPE_UINT ){
-
7575 dstype = "HELIOS_TYPE_UINT";
-
7576 }else if( dtype==HELIOS_TYPE_FLOAT ){
-
7577 dstype = "HELIOS_TYPE_FLOAT";
-
7578 }else if( dtype==HELIOS_TYPE_DOUBLE ){
-
7579 dstype = "HELIOS_TYPE_DOUBLE";
-
7580 }else if( dtype==HELIOS_TYPE_VEC2 ){
-
7581 dstype = "HELIOS_TYPE_VEC2";
-
7582 }else if( dtype==HELIOS_TYPE_VEC3 ){
-
7583 dstype = "HELIOS_TYPE_VEC3";
-
7584 }else if( dtype==HELIOS_TYPE_VEC4 ){
-
7585 dstype = "HELIOS_TYPE_VEC4";
-
7586 }else if( dtype==HELIOS_TYPE_INT2 ){
-
7587 dstype = "HELIOS_TYPE_INT2";
-
7588 }else if( dtype==HELIOS_TYPE_INT3 ){
-
7589 dstype = "HELIOS_TYPE_INT3";
-
7590 }else if( dtype==HELIOS_TYPE_INT4 ){
-
7591 dstype = "HELIOS_TYPE_INT4";
-
7592 }else if( dtype==HELIOS_TYPE_STRING ){
-
7593 dstype = "HELIOS_TYPE_STRING";
-
7594 }else{
-
7595 assert(false);
-
7596 }
-
7597
-
7598
-
7599 std::cout << " " << "[name: " << pd.at(i) << ", type: " << dstype << ", size: " << dsize << "]:" << std::endl;
-
7600
+
7535
+
7536 }else if(otype == OBJECT_TYPE_SPHERE){
+
7537
+
7538 std::cout << "Sphere Center: " << getSphereObjectCenter(ObjID) << std::endl;
+
7539 std::cout << "Sphere Radius: " << getSphereObjectRadius(ObjID) << std::endl;
+
7540 std::cout << "Sphere Subdivision Count: " << getSphereObjectSubdivisionCount(ObjID) << std::endl;
+
7541
+
7542 }else if(otype == OBJECT_TYPE_TUBE){
+
7543
+
7544 std::cout << "Tube Subdivision Count: " << getTubeObjectSubdivisionCount(ObjID) << std::endl;
+
7545 std::cout << "Tube Nodes: " << std::endl;
+
7546 std::vector<vec3> nodes = getTubeObjectNodes(ObjID);
+
7547 for(uint i=0; i<nodes.size();i++)
+
7548 {
+
7549 if(i < 10){
+
7550 std::cout << " " << nodes.at(i) << std::endl;
+
7551 }else{
+
7552 std::cout << " ..." << std::endl;
+
7553 std::cout << " " << nodes.at(nodes.size()-2) << std::endl;
+
7554 std::cout << " " << nodes.at(nodes.size()-1) << std::endl;
+
7555 break;
+
7556 }
+
7557 }
+
7558 std::cout << "Tube Node Radii: " << std::endl;
+
7559 std::vector<float> noderadii = getTubeObjectNodeRadii(ObjID);
+
7560 for(uint i=0; i<noderadii.size();i++)
+
7561 {
+
7562 if(i < 10){
+
7563 std::cout << " " << noderadii.at(i) << std::endl;
+
7564 }else{
+
7565 std::cout << " ..." << std::endl;
+
7566 std::cout << " " << noderadii.at(noderadii.size()-2) << std::endl;
+
7567 std::cout << " " << noderadii.at(noderadii.size()-1) << std::endl;
+
7568 break;
+
7569 }
+
7570 }
+
7571 std::cout << "Tube Node Colors: " << std::endl;
+
7572 std::vector<helios::RGBcolor> nodecolors = getTubeObjectNodeColors(ObjID);
+
7573 for(uint i=0; i<nodecolors.size();i++)
+
7574 {
+
7575 if(i < 10){
+
7576 std::cout << " " << nodecolors.at(i) << std::endl;
+
7577 }else{
+
7578 std::cout << " ..." << std::endl;
+
7579 std::cout << " " << nodecolors.at(nodecolors.size()-2) << std::endl;
+
7580 std::cout << " " << nodecolors.at(nodecolors.size()-1) << std::endl;
+
7581 break;
+
7582 }
+
7583 }
+
7584
+
7585 }else if(otype == OBJECT_TYPE_BOX){
+
7586
+
7587 std::cout << "Box Center: " << getBoxObjectCenter(ObjID) << std::endl;
+
7588 std::cout << "Box Size: " << getBoxObjectSize(ObjID) << std::endl;
+
7589 std::cout << "Box Subdivision Count: " << getBoxObjectSubdivisionCount(ObjID) << std::endl;
+
7590
+
7591 }else if(otype == OBJECT_TYPE_DISK){
+
7592
+
7593 std::cout << "Disk Center: " << getDiskObjectCenter(ObjID) << std::endl;
+
7594 std::cout << "Disk Size: " << getDiskObjectSize(ObjID) << std::endl;
+
7595 std::cout << "Disk Subdivision Count: " << getDiskObjectSubdivisionCount(ObjID) << std::endl;
+
7596
+
7597 // }else if(type == OBJECT_TYPE_POLYMESH){
+
7598 // nothing for now
+
7599
+
7600 }else if(otype == OBJECT_TYPE_CONE){
7601
-
7602 if( dtype==HELIOS_TYPE_INT ){
-
7603 std::vector<int> pdata;
-
7604 getObjectData( ObjID, pd.at(i).c_str(), pdata );
-
7605 for(uint j=0; j<dsize;j++)
-
7606 {
-
7607 if(j < 10){
-
7608 std::cout << " " << pdata.at(j) << std::endl;
-
7609 }else{
-
7610 std::cout << " ..." << std::endl;
-
7611 std::cout << " " << pdata.at(dsize-2) << std::endl;
-
7612 std::cout << " " << pdata.at(dsize-1) << std::endl;
-
7613 break;
-
7614 }
-
7615
-
7616 }
-
7617 }else if( dtype==HELIOS_TYPE_UINT ){
-
7618 std::vector<uint> pdata;
-
7619 getObjectData( ObjID, pd.at(i).c_str(), pdata );
-
7620 for(uint j=0; j<dsize;j++)
-
7621 {
-
7622 if(j < 10){
-
7623 std::cout << " " << pdata.at(j) << std::endl;
-
7624 }else{
-
7625 std::cout << " ..." << std::endl;
-
7626 std::cout << " " << pdata.at(dsize-2) << std::endl;
-
7627 std::cout << " " << pdata.at(dsize-1) << std::endl;
-
7628 break;
-
7629 }
-
7630
-
7631 }
-
7632 }else if( dtype==HELIOS_TYPE_FLOAT ){
-
7633 std::vector<float> pdata;
-
7634 getObjectData( ObjID, pd.at(i).c_str(), pdata );
-
7635 for(uint j=0; j<dsize;j++)
-
7636 {
-
7637 if(j < 10){
-
7638 std::cout << " " << pdata.at(j) << std::endl;
-
7639 }else{
-
7640 std::cout << " ..." << std::endl;
-
7641 std::cout << " " << pdata.at(dsize-2) << std::endl;
-
7642 std::cout << " " << pdata.at(dsize-1) << std::endl;
-
7643 break;
-
7644 }
-
7645
-
7646 }
-
7647 }else if( dtype==HELIOS_TYPE_DOUBLE ){
-
7648 std::vector<double> pdata;
-
7649 getObjectData(ObjID, pd.at(i).c_str(), pdata );
-
7650 for(uint j=0; j<dsize;j++)
-
7651 {
-
7652 if(j < 10){
-
7653 std::cout << " " << pdata.at(j) << std::endl;
-
7654 }else{
-
7655 std::cout << " ..." << std::endl;
-
7656 std::cout << " " << pdata.at(dsize-2) << std::endl;
-
7657 std::cout << " " << pdata.at(dsize-1) << std::endl;
-
7658 break;
-
7659 }
-
7660
-
7661 }
-
7662 }else if( dtype==HELIOS_TYPE_VEC2 ){
-
7663 std::vector<vec2> pdata;
-
7664 getObjectData(ObjID, pd.at(i).c_str(), pdata );
-
7665 for(uint j=0; j<dsize;j++)
-
7666 {
-
7667 if(j < 10){
-
7668 std::cout << " " << pdata.at(j) << std::endl;
-
7669 }else{
-
7670 std::cout << " ..." << std::endl;
-
7671 std::cout << " " << pdata.at(dsize-2) << std::endl;
-
7672 std::cout << " " << pdata.at(dsize-1) << std::endl;
-
7673 break;
-
7674 }
-
7675
-
7676 }
-
7677 }else if( dtype==HELIOS_TYPE_VEC3 ){
-
7678 std::vector<vec3> pdata;
-
7679 getObjectData(ObjID, pd.at(i).c_str(), pdata );
-
7680 for(uint j=0; j<dsize;j++)
-
7681 {
-
7682 if(j < 10){
-
7683 std::cout << " " << pdata.at(j) << std::endl;
-
7684 }else{
-
7685 std::cout << " ..." << std::endl;
-
7686 std::cout << " " << pdata.at(dsize-2) << std::endl;
-
7687 std::cout << " " << pdata.at(dsize-1) << std::endl;
-
7688 break;
-
7689 }
-
7690
-
7691 }
-
7692 }else if( dtype==HELIOS_TYPE_VEC4 ){
-
7693 std::vector<vec4> pdata;
-
7694 getObjectData(ObjID, pd.at(i).c_str(), pdata );
-
7695 for(uint j=0; j<dsize;j++)
-
7696 {
-
7697 if(j < 10){
-
7698 std::cout << " " << pdata.at(j) << std::endl;
-
7699 }else{
-
7700 std::cout << " ..." << std::endl;
-
7701 std::cout << " " << pdata.at(dsize-2) << std::endl;
-
7702 std::cout << " " << pdata.at(dsize-1) << std::endl;
-
7703 break;
-
7704 }
-
7705
-
7706 }
-
7707 }else if( dtype==HELIOS_TYPE_INT2 ){
-
7708 std::vector<int2> pdata;
-
7709 getObjectData(ObjID, pd.at(i).c_str(), pdata );
-
7710 for(uint j=0; j<dsize;j++)
-
7711 {
-
7712 if(j < 10){
-
7713 std::cout << " " << pdata.at(j) << std::endl;
-
7714 }else{
-
7715 std::cout << " ..." << std::endl;
-
7716 std::cout << " " << pdata.at(dsize-2) << std::endl;
-
7717 std::cout << " " << pdata.at(dsize-1) << std::endl;
-
7718 break;
-
7719 }
-
7720
-
7721 }
-
7722 }else if( dtype==HELIOS_TYPE_INT3 ){
-
7723 std::vector<int3> pdata;
-
7724 getObjectData(ObjID, pd.at(i).c_str(), pdata );
-
7725 for(uint j=0; j<dsize;j++)
-
7726 {
-
7727 if(j < 10){
-
7728 std::cout << " " << pdata.at(j) << std::endl;
-
7729 }else{
-
7730 std::cout << " ..." << std::endl;
-
7731 std::cout << " " << pdata.at(dsize-2) << std::endl;
-
7732 std::cout << " " << pdata.at(dsize-1) << std::endl;
-
7733 break;
-
7734 }
-
7735
-
7736 }
-
7737 }else if( dtype==HELIOS_TYPE_INT4 ){
-
7738 std::vector<int4> pdata;
-
7739 getObjectData(ObjID, pd.at(i).c_str(), pdata );
-
7740 for(uint j=0; j<dsize;j++)
-
7741 {
-
7742 if(j < 10){
-
7743 std::cout << " " << pdata.at(j) << std::endl;
-
7744 }else{
-
7745 std::cout << " ..." << std::endl;
-
7746 break;
-
7747 }
-
7748
-
7749 }
-
7750 }else if( dtype==HELIOS_TYPE_STRING ){
-
7751 std::vector<std::string> pdata;
-
7752 getObjectData(ObjID, pd.at(i).c_str(), pdata );
-
7753 for(uint j=0; j<dsize;j++)
-
7754 {
-
7755 if(j < 10){
-
7756 std::cout << " " << pdata.at(j) << std::endl;
-
7757 }else{
-
7758 std::cout << " ..." << std::endl;
-
7759 break;
-
7760 }
-
7761
-
7762 }
-
7763 }else{
-
7764 assert(false);
-
7765 }
-
7766
-
7767 }
-
7768 std::cout << "-------------------------------------------" << std::endl;
-
7769}
-
-
7770
-
7771CompoundObject* Context::getObjectPointer_private( uint ObjID ) const{
-
7772 if( objects.find(ObjID) == objects.end() ){
-
7773 helios_runtime_error("ERROR (Context::getObjectPointer): ObjectID of " + std::to_string(ObjID) + " does not exist in the Context.");
-
7774 }
-
7775 return objects.at(ObjID);
-
7776}
-
7777
-
-
7778void Context::hideObject( const std::vector<uint> &ObjIDs ){
-
7779 for( uint ObjID : ObjIDs ) {
-
7780 if( !doesObjectExist(ObjID) ){
-
7781 helios_runtime_error("ERROR (Context::hideObject): Object ID of " + std::to_string(ObjID) + " does not exist in the Context.");
-
7782 }
-
7783 objects.at(ObjID)->ishidden = true;
-
7784 for( uint UUID : objects.at(ObjID)->getPrimitiveUUIDs() ){
-
7785 primitives.at(UUID)->ishidden = true;
-
7786 }
-
7787 }
-
7788}
-
-
7789
-
-
7790bool Context::isObjectHidden( uint ObjID ) const{
-
7791 if( !doesObjectExist(ObjID) ){
-
7792 helios_runtime_error("ERROR (Context::isObjectHidden): Object ID of " + std::to_string(ObjID) + " does not exist in the Context.");
-
7793 }
-
7794 return objects.at(ObjID)->ishidden;
-
7795}
-
-
7796
-
-
7797float Context::getObjectArea(uint ObjID) const {
-
7798 return getObjectPointer_private(ObjID)->getArea();
-
7799}
-
-
7800
-
-
7801uint Context::getObjectPrimitiveCount(uint ObjID) const {
-
7802 return getObjectPointer_private(ObjID)->getPrimitiveCount();
-
7803}
-
-
7804
-
-
7805helios::vec3 Context::getObjectCenter(uint ObjID) const {
-
7806 return getObjectPointer_private(ObjID)->getObjectCenter();
-
7807}
-
-
7808
-
-
7809std::string Context::getObjectTextureFile(uint ObjID) const{
-
7810 return getObjectPointer_private(ObjID)->getTextureFile();
-
7811}
-
-
7812
-
-
7813void Context::getObjectTransformationMatrix(uint ObjID, float (&T)[16] ) const {
-
7814 getObjectPointer_private(ObjID)->getTransformationMatrix( T );
-
7815}
-
-
7816
-
-
7817void Context::setObjectTransformationMatrix(uint ObjID, float (&T)[16] ) {
-
7818 getObjectPointer_private(ObjID)->setTransformationMatrix(T);
-
7819}
-
-
7820
-
-
7821void Context::setObjectTransformationMatrix(const std::vector<uint> &ObjIDs, float (&T)[16] ) {
-
7822 for( uint ObjID : ObjIDs){
-
7823 getObjectPointer_private(ObjID)->setTransformationMatrix(T);
-
7824 }
-
7825}
-
-
7826
-
-
7827bool Context::objectHasTexture( uint ObjID ) const{
-
7828 return getObjectPointer_private(ObjID)->hasTexture();
-
7829}
-
-
7830
-
-
7831void Context::setObjectColor(uint ObjID, const RGBcolor &color) {
-
7832 getObjectPointer_private(ObjID)->setColor( color );
-
7833}
-
-
7834
-
-
7835void Context::setObjectColor(const std::vector<uint> &ObjIDs, const RGBcolor &color) {
-
7836 for( uint ObjID : ObjIDs){
-
7837 getObjectPointer_private(ObjID)->setColor(color);
-
7838 }
-
7839}
-
-
7840
-
-
7841void Context::setObjectColor(uint ObjID, const RGBAcolor &color) {
-
7842 getObjectPointer_private(ObjID)->setColor( color );
+
7602 std::cout << "Cone Length: " << getConeObjectLength(ObjID) << std::endl;
+
7603 std::cout << "Cone Axis Unit Vector: " << getConeObjectAxisUnitVector(ObjID) << std::endl;
+
7604 std::cout << "Cone Subdivision Count: " << getConeObjectSubdivisionCount(ObjID) << std::endl;
+
7605 std::cout << "Cone Nodes: " << std::endl;
+
7606 std::vector<vec3> nodes = getConeObjectNodes(ObjID);
+
7607 for(uint i=0; i<nodes.size();i++)
+
7608 {
+
7609 std::cout << " " << nodes.at(i) << std::endl;
+
7610 }
+
7611 std::cout << "Cone Node Radii: " << std::endl;
+
7612 std::vector<float> noderadii = getConeObjectNodeRadii(ObjID);
+
7613 for(uint i=0; i<noderadii.size();i++)
+
7614 {
+
7615 std::cout << " " << noderadii.at(i) << std::endl;
+
7616 }
+
7617 }
+
7618
+
7619
+
7620 float T[16];
+
7621 getObjectTransformationMatrix(ObjID, T);
+
7622 std::cout << "Transform: " << std::endl;
+
7623 std::cout << " " << T[0] << " " << T[1] << " " << T[2] << " " << T[3] << std::endl;
+
7624 std::cout << " " << T[4] << " " << T[5] << " " << T[6] << " " << T[7] << std::endl;
+
7625 std::cout << " " << T[8] << " " << T[9] << " " << T[10] << " " << T[11] << std::endl;
+
7626 std::cout << " " << T[12] << " " << T[13] << " " << T[14] << " " << T[15] << std::endl;
+
7627
+
7628 std::cout << "Texture File: " << getObjectTextureFile(ObjID) << std::endl;
+
7629
+
7630 std::cout << "Object Data: " << std::endl;
+
7631 // Primitive* pointer = getPrimitivePointer_private(ObjID);
+
7632 std::vector<std::string> pd = listObjectData(ObjID);
+
7633 for(uint i=0; i<pd.size();i++)
+
7634 {
+
7635 uint dsize = getObjectDataSize(ObjID, pd.at(i).c_str());
+
7636 HeliosDataType dtype = getObjectDataType(ObjID, pd.at(i).c_str());
+
7637 std::string dstype;
+
7638
+
7639 if( dtype==HELIOS_TYPE_INT ){
+
7640 dstype = "HELIOS_TYPE_INT";
+
7641 }else if( dtype==HELIOS_TYPE_UINT ){
+
7642 dstype = "HELIOS_TYPE_UINT";
+
7643 }else if( dtype==HELIOS_TYPE_FLOAT ){
+
7644 dstype = "HELIOS_TYPE_FLOAT";
+
7645 }else if( dtype==HELIOS_TYPE_DOUBLE ){
+
7646 dstype = "HELIOS_TYPE_DOUBLE";
+
7647 }else if( dtype==HELIOS_TYPE_VEC2 ){
+
7648 dstype = "HELIOS_TYPE_VEC2";
+
7649 }else if( dtype==HELIOS_TYPE_VEC3 ){
+
7650 dstype = "HELIOS_TYPE_VEC3";
+
7651 }else if( dtype==HELIOS_TYPE_VEC4 ){
+
7652 dstype = "HELIOS_TYPE_VEC4";
+
7653 }else if( dtype==HELIOS_TYPE_INT2 ){
+
7654 dstype = "HELIOS_TYPE_INT2";
+
7655 }else if( dtype==HELIOS_TYPE_INT3 ){
+
7656 dstype = "HELIOS_TYPE_INT3";
+
7657 }else if( dtype==HELIOS_TYPE_INT4 ){
+
7658 dstype = "HELIOS_TYPE_INT4";
+
7659 }else if( dtype==HELIOS_TYPE_STRING ){
+
7660 dstype = "HELIOS_TYPE_STRING";
+
7661 }else{
+
7662 assert(false);
+
7663 }
+
7664
+
7665
+
7666 std::cout << " " << "[name: " << pd.at(i) << ", type: " << dstype << ", size: " << dsize << "]:" << std::endl;
+
7667
+
7668
+
7669 if( dtype==HELIOS_TYPE_INT ){
+
7670 std::vector<int> pdata;
+
7671 getObjectData( ObjID, pd.at(i).c_str(), pdata );
+
7672 for(uint j=0; j<dsize;j++)
+
7673 {
+
7674 if(j < 10){
+
7675 std::cout << " " << pdata.at(j) << std::endl;
+
7676 }else{
+
7677 std::cout << " ..." << std::endl;
+
7678 std::cout << " " << pdata.at(dsize-2) << std::endl;
+
7679 std::cout << " " << pdata.at(dsize-1) << std::endl;
+
7680 break;
+
7681 }
+
7682
+
7683 }
+
7684 }else if( dtype==HELIOS_TYPE_UINT ){
+
7685 std::vector<uint> pdata;
+
7686 getObjectData( ObjID, pd.at(i).c_str(), pdata );
+
7687 for(uint j=0; j<dsize;j++)
+
7688 {
+
7689 if(j < 10){
+
7690 std::cout << " " << pdata.at(j) << std::endl;
+
7691 }else{
+
7692 std::cout << " ..." << std::endl;
+
7693 std::cout << " " << pdata.at(dsize-2) << std::endl;
+
7694 std::cout << " " << pdata.at(dsize-1) << std::endl;
+
7695 break;
+
7696 }
+
7697
+
7698 }
+
7699 }else if( dtype==HELIOS_TYPE_FLOAT ){
+
7700 std::vector<float> pdata;
+
7701 getObjectData( ObjID, pd.at(i).c_str(), pdata );
+
7702 for(uint j=0; j<dsize;j++)
+
7703 {
+
7704 if(j < 10){
+
7705 std::cout << " " << pdata.at(j) << std::endl;
+
7706 }else{
+
7707 std::cout << " ..." << std::endl;
+
7708 std::cout << " " << pdata.at(dsize-2) << std::endl;
+
7709 std::cout << " " << pdata.at(dsize-1) << std::endl;
+
7710 break;
+
7711 }
+
7712
+
7713 }
+
7714 }else if( dtype==HELIOS_TYPE_DOUBLE ){
+
7715 std::vector<double> pdata;
+
7716 getObjectData(ObjID, pd.at(i).c_str(), pdata );
+
7717 for(uint j=0; j<dsize;j++)
+
7718 {
+
7719 if(j < 10){
+
7720 std::cout << " " << pdata.at(j) << std::endl;
+
7721 }else{
+
7722 std::cout << " ..." << std::endl;
+
7723 std::cout << " " << pdata.at(dsize-2) << std::endl;
+
7724 std::cout << " " << pdata.at(dsize-1) << std::endl;
+
7725 break;
+
7726 }
+
7727
+
7728 }
+
7729 }else if( dtype==HELIOS_TYPE_VEC2 ){
+
7730 std::vector<vec2> pdata;
+
7731 getObjectData(ObjID, pd.at(i).c_str(), pdata );
+
7732 for(uint j=0; j<dsize;j++)
+
7733 {
+
7734 if(j < 10){
+
7735 std::cout << " " << pdata.at(j) << std::endl;
+
7736 }else{
+
7737 std::cout << " ..." << std::endl;
+
7738 std::cout << " " << pdata.at(dsize-2) << std::endl;
+
7739 std::cout << " " << pdata.at(dsize-1) << std::endl;
+
7740 break;
+
7741 }
+
7742
+
7743 }
+
7744 }else if( dtype==HELIOS_TYPE_VEC3 ){
+
7745 std::vector<vec3> pdata;
+
7746 getObjectData(ObjID, pd.at(i).c_str(), pdata );
+
7747 for(uint j=0; j<dsize;j++)
+
7748 {
+
7749 if(j < 10){
+
7750 std::cout << " " << pdata.at(j) << std::endl;
+
7751 }else{
+
7752 std::cout << " ..." << std::endl;
+
7753 std::cout << " " << pdata.at(dsize-2) << std::endl;
+
7754 std::cout << " " << pdata.at(dsize-1) << std::endl;
+
7755 break;
+
7756 }
+
7757
+
7758 }
+
7759 }else if( dtype==HELIOS_TYPE_VEC4 ){
+
7760 std::vector<vec4> pdata;
+
7761 getObjectData(ObjID, pd.at(i).c_str(), pdata );
+
7762 for(uint j=0; j<dsize;j++)
+
7763 {
+
7764 if(j < 10){
+
7765 std::cout << " " << pdata.at(j) << std::endl;
+
7766 }else{
+
7767 std::cout << " ..." << std::endl;
+
7768 std::cout << " " << pdata.at(dsize-2) << std::endl;
+
7769 std::cout << " " << pdata.at(dsize-1) << std::endl;
+
7770 break;
+
7771 }
+
7772
+
7773 }
+
7774 }else if( dtype==HELIOS_TYPE_INT2 ){
+
7775 std::vector<int2> pdata;
+
7776 getObjectData(ObjID, pd.at(i).c_str(), pdata );
+
7777 for(uint j=0; j<dsize;j++)
+
7778 {
+
7779 if(j < 10){
+
7780 std::cout << " " << pdata.at(j) << std::endl;
+
7781 }else{
+
7782 std::cout << " ..." << std::endl;
+
7783 std::cout << " " << pdata.at(dsize-2) << std::endl;
+
7784 std::cout << " " << pdata.at(dsize-1) << std::endl;
+
7785 break;
+
7786 }
+
7787
+
7788 }
+
7789 }else if( dtype==HELIOS_TYPE_INT3 ){
+
7790 std::vector<int3> pdata;
+
7791 getObjectData(ObjID, pd.at(i).c_str(), pdata );
+
7792 for(uint j=0; j<dsize;j++)
+
7793 {
+
7794 if(j < 10){
+
7795 std::cout << " " << pdata.at(j) << std::endl;
+
7796 }else{
+
7797 std::cout << " ..." << std::endl;
+
7798 std::cout << " " << pdata.at(dsize-2) << std::endl;
+
7799 std::cout << " " << pdata.at(dsize-1) << std::endl;
+
7800 break;
+
7801 }
+
7802
+
7803 }
+
7804 }else if( dtype==HELIOS_TYPE_INT4 ){
+
7805 std::vector<int4> pdata;
+
7806 getObjectData(ObjID, pd.at(i).c_str(), pdata );
+
7807 for(uint j=0; j<dsize;j++)
+
7808 {
+
7809 if(j < 10){
+
7810 std::cout << " " << pdata.at(j) << std::endl;
+
7811 }else{
+
7812 std::cout << " ..." << std::endl;
+
7813 break;
+
7814 }
+
7815
+
7816 }
+
7817 }else if( dtype==HELIOS_TYPE_STRING ){
+
7818 std::vector<std::string> pdata;
+
7819 getObjectData(ObjID, pd.at(i).c_str(), pdata );
+
7820 for(uint j=0; j<dsize;j++)
+
7821 {
+
7822 if(j < 10){
+
7823 std::cout << " " << pdata.at(j) << std::endl;
+
7824 }else{
+
7825 std::cout << " ..." << std::endl;
+
7826 break;
+
7827 }
+
7828
+
7829 }
+
7830 }else{
+
7831 assert(false);
+
7832 }
+
7833
+
7834 }
+
7835 std::cout << "-------------------------------------------" << std::endl;
+
7836}
+
+
7837
+
7838CompoundObject* Context::getObjectPointer_private( uint ObjID ) const{
+
7839 if( objects.find(ObjID) == objects.end() ){
+
7840 helios_runtime_error("ERROR (Context::getObjectPointer): ObjectID of " + std::to_string(ObjID) + " does not exist in the Context.");
+
7841 }
+
7842 return objects.at(ObjID);
7843}
-
7844
-
7845void Context::setObjectColor(const std::vector<uint> &ObjIDs, const RGBAcolor &color) {
-
7846 for( uint ObjID : ObjIDs){
-
7847 getObjectPointer_private(ObjID)->setColor(color);
-
7848 }
-
7849}
-
-
7850
-
-
7851bool Context::doesObjectContainPrimitive(uint ObjID, uint UUID ){
-
7852 return getObjectPointer_private(ObjID)->doesObjectContainPrimitive( UUID );
-
7853}
-
-
7854
-
-
7855void Context::overrideObjectTextureColor(uint ObjID) {
-
7856 getObjectPointer_private(ObjID)->overrideTextureColor();
-
7857}
-
-
7858
-
-
7859void Context::overrideObjectTextureColor( const std::vector<uint> &ObjIDs) {
-
7860 for( uint ObjID : ObjIDs ) {
-
7861 getObjectPointer_private(ObjID)->overrideTextureColor();
-
7862 }
-
7863}
-
-
7864
-
-
7865void Context::useObjectTextureColor(uint ObjID) {
-
7866 getObjectPointer_private(ObjID)->useTextureColor();
-
7867}
-
-
7868
-
-
7869void Context::useObjectTextureColor( const std::vector<uint> &ObjIDs) {
-
7870 for( uint ObjID : ObjIDs ) {
-
7871 getObjectPointer_private(ObjID)->useTextureColor();
-
7872 }
-
7873}
-
-
7874
-
-
7875void Context::getObjectBoundingBox( uint ObjID, vec3 &min_corner, vec3 &max_corner ) const {
-
7876 std::vector<uint> ObjIDs{ObjID};
-
7877 getObjectBoundingBox(ObjIDs,min_corner,max_corner);
+
7845void Context::hideObject( const std::vector<uint> &ObjIDs ){
+
7846 for( uint ObjID : ObjIDs ) {
+
7847 if( !doesObjectExist(ObjID) ){
+
7848 helios_runtime_error("ERROR (Context::hideObject): Object ID of " + std::to_string(ObjID) + " does not exist in the Context.");
+
7849 }
+
7850 objects.at(ObjID)->ishidden = true;
+
7851 for( uint UUID : objects.at(ObjID)->getPrimitiveUUIDs() ){
+
7852 primitives.at(UUID)->ishidden = true;
+
7853 }
+
7854 }
+
7855}
+
+
7856
+
+
7857bool Context::isObjectHidden( uint ObjID ) const{
+
7858 if( !doesObjectExist(ObjID) ){
+
7859 helios_runtime_error("ERROR (Context::isObjectHidden): Object ID of " + std::to_string(ObjID) + " does not exist in the Context.");
+
7860 }
+
7861 return objects.at(ObjID)->ishidden;
+
7862}
+
+
7863
+
+
7864float Context::getObjectArea(uint ObjID) const {
+
7865 return getObjectPointer_private(ObjID)->getArea();
+
7866}
+
+
7867
+
+
7868uint Context::getObjectPrimitiveCount(uint ObjID) const {
+
7869 return getObjectPointer_private(ObjID)->getPrimitiveCount();
+
7870}
+
+
7871
+
+
7872helios::vec3 Context::getObjectCenter(uint ObjID) const {
+
7873 return getObjectPointer_private(ObjID)->getObjectCenter();
+
7874}
+
+
7875
+
+
7876std::string Context::getObjectTextureFile(uint ObjID) const{
+
7877 return getObjectPointer_private(ObjID)->getTextureFile();
7878}
7879
-
7880void Context::getObjectBoundingBox( const std::vector<uint> &ObjIDs, vec3 &min_corner, vec3 &max_corner ) const{
-
7881
-
7882 uint o=0;
-
7883 for( uint ObjID : ObjIDs ) {
-
7884
-
7885 if ( objects.find(ObjID) == objects.end()){
-
7886 helios_runtime_error("ERROR (Context::getObjectBoundingBox): ObjectID of " + std::to_string(ObjID) + " does not exist in the Context.");
-
7887 }
-
7888
-
7889 const std::vector<uint> &UUIDs = objects.at(ObjID)->getPrimitiveUUIDs();
-
7890
-
7891 uint p=0;
-
7892 for (uint UUID: UUIDs) {
+
7880void Context::getObjectTransformationMatrix(uint ObjID, float (&T)[16] ) const {
+
7881 getObjectPointer_private(ObjID)->getTransformationMatrix( T );
+
7882}
+
+
7883
+
+
7884void Context::setObjectTransformationMatrix(uint ObjID, float (&T)[16] ) {
+
7885 getObjectPointer_private(ObjID)->setTransformationMatrix(T);
+
7886}
+
+
7887
+
+
7888void Context::setObjectTransformationMatrix(const std::vector<uint> &ObjIDs, float (&T)[16] ) {
+
7889 for( uint ObjID : ObjIDs){
+
7890 getObjectPointer_private(ObjID)->setTransformationMatrix(T);
+
7891 }
+
7892}
+
7893
-
7894 const std::vector<vec3> &vertices = getPrimitiveVertices(UUID);
-
7895
-
7896 if( p==0 && o==0 ){
-
7897 min_corner = vertices.front();
-
7898 max_corner = min_corner;
-
7899 p++;
-
7900 continue;
-
7901 }
-
7902
-
7903 for (const vec3 &vert: vertices) {
-
7904 if (vert.x < min_corner.x) {
-
7905 min_corner.x = vert.x;
-
7906 }
-
7907 if (vert.y < min_corner.y) {
-
7908 min_corner.y = vert.y;
-
7909 }
-
7910 if (vert.z < min_corner.z) {
-
7911 min_corner.z = vert.z;
-
7912 }
-
7913 if (vert.x > max_corner.x) {
-
7914 max_corner.x = vert.x;
-
7915 }
-
7916 if (vert.y > max_corner.y) {
-
7917 max_corner.y = vert.y;
-
7918 }
-
7919 if (vert.z > max_corner.z) {
-
7920 max_corner.z = vert.z;
-
7921 }
-
7922 }
-
7923 }
-
7924
-
7925 o++;
-
7926 }
-
7927
-
7928}
-
-
7929
-
7930Tile* Context::getTileObjectPointer_private(uint ObjID ) const{
-
7931 if( objects.find(ObjID) == objects.end() ){
-
7932 helios_runtime_error("ERROR (Context::getTileObjectPointer): ObjectID of " + std::to_string(ObjID) + " does not exist in the Context.");
-
7933 }else if( objects.at(ObjID)->getObjectType()!=OBJECT_TYPE_TILE ){
-
7934 helios_runtime_error("ERROR (Context::getTileObjectPointer): ObjectID of " + std::to_string(ObjID) + " is not a Tile Object.");
-
7935 }
-
7936 return dynamic_cast<Tile*>(objects.at(ObjID));
-
7937}
-
7938
-
7939Sphere* Context::getSphereObjectPointer_private(uint ObjID ) const{
-
7940 if( objects.find(ObjID) == objects.end() ){
-
7941 helios_runtime_error("ERROR (Context::getSphereObjectPointer): ObjectID of " + std::to_string(ObjID) + " does not exist in the Context.");
-
7942 }else if( objects.at(ObjID)->getObjectType()!=OBJECT_TYPE_SPHERE ){
-
7943 helios_runtime_error("ERROR (Context::getSphereObjectPointer): ObjectID of " + std::to_string(ObjID) + " is not a Sphere Object.");
-
7944 }
-
7945 return dynamic_cast<Sphere*>(objects.at(ObjID));
-
7946}
-
7947
-
7948Tube* Context::getTubeObjectPointer_private(uint ObjID ) const{
-
7949 if( objects.find(ObjID) == objects.end() ){
-
7950 helios_runtime_error("ERROR (Context::getTubeObjectPointer): ObjectID of " + std::to_string(ObjID) + " does not exist in the Context.");
-
7951 }else if( objects.at(ObjID)->getObjectType()!=OBJECT_TYPE_TUBE ){
-
7952 helios_runtime_error("ERROR (Context::getTubeObjectPointer): ObjectID of " + std::to_string(ObjID) + " is not a Tube Object.");
-
7953 }
-
7954 return dynamic_cast<Tube*>(objects.at(ObjID));
-
7955}
-
7956
-
7957Box* Context::getBoxObjectPointer_private(uint ObjID ) const{
-
7958 if( objects.find(ObjID) == objects.end() ){
-
7959 helios_runtime_error("ERROR (Context::getBoxObjectPointer): ObjectID of " + std::to_string(ObjID) + " does not exist in the Context.");
-
7960 }else if( objects.at(ObjID)->getObjectType()!=OBJECT_TYPE_BOX ){
-
7961 helios_runtime_error("ERROR (Context::getBoxObjectPointer): ObjectID of " + std::to_string(ObjID) + " is not a Box Object.");
-
7962 }
-
7963 return dynamic_cast<Box*>(objects.at(ObjID));
-
7964}
-
7965
-
7966Disk* Context::getDiskObjectPointer_private(uint ObjID ) const{
-
7967 if( objects.find(ObjID) == objects.end() ){
-
7968 helios_runtime_error("ERROR (Context::getDiskObjectPointer): ObjectID of " + std::to_string(ObjID) + " does not exist in the Context.");
-
7969 }else if( objects.at(ObjID)->getObjectType()!=OBJECT_TYPE_DISK ){
-
7970 helios_runtime_error("ERROR (Context::getDiskObjectPointer): ObjectID of " + std::to_string(ObjID) + " is not a Disk Object.");
-
7971 }
-
7972 return dynamic_cast<Disk*>(objects.at(ObjID));
-
7973}
-
7974
-
7975Polymesh* Context::getPolymeshObjectPointer_private(uint ObjID ) const{
-
7976 if( objects.find(ObjID) == objects.end() ){
-
7977 helios_runtime_error("ERROR (Context::getPolymeshObjectPointer): ObjectID of " + std::to_string(ObjID) + " does not exist in the Context.");
-
7978 }else if( objects.at(ObjID)->getObjectType()!=OBJECT_TYPE_POLYMESH ){
-
7979 helios_runtime_error("ERROR (Context::getPolymeshObjectPointer): ObjectID of " + std::to_string(ObjID) + " is not a Polymesh Object.");
-
7980 }
-
7981 return dynamic_cast<Polymesh*>(objects.at(ObjID));
-
7982}
-
7983
-
7984Cone* Context::getConeObjectPointer_private(uint ObjID ) const{
-
7985 if( objects.find(ObjID) == objects.end() ){
-
7986 helios_runtime_error("ERROR (Context::getConeObjectPointer): ObjectID of " + std::to_string(ObjID) + " does not exist in the Context.");
-
7987 }else if( objects.at(ObjID)->getObjectType()!=OBJECT_TYPE_CONE ){
-
7988 helios_runtime_error("ERROR (Context::getConeObjectPointer): ObjectID of " + std::to_string(ObjID) + " is not a Cone Object.");
-
7989 }
-
7990 return dynamic_cast<Cone*>(objects.at(ObjID));
-
7991}
-
7992
-
-
7993helios::vec3 Context::getTileObjectCenter(uint ObjID) const {
-
7994 return getTileObjectPointer_private(ObjID)->getCenter();
+
+
7894bool Context::objectHasTexture( uint ObjID ) const{
+
7895 return getObjectPointer_private(ObjID)->hasTexture();
+
7896}
+
+
7897
+
+
7898void Context::setObjectColor(uint ObjID, const RGBcolor &color) {
+
7899 getObjectPointer_private(ObjID)->setColor( color );
+
7900}
+
+
7901
+
+
7902void Context::setObjectColor(const std::vector<uint> &ObjIDs, const RGBcolor &color) {
+
7903 for( uint ObjID : ObjIDs){
+
7904 getObjectPointer_private(ObjID)->setColor(color);
+
7905 }
+
7906}
+
+
7907
+
+
7908void Context::setObjectColor(uint ObjID, const RGBAcolor &color) {
+
7909 getObjectPointer_private(ObjID)->setColor( color );
+
7910}
+
+
7911
+
+
7912void Context::setObjectColor(const std::vector<uint> &ObjIDs, const RGBAcolor &color) {
+
7913 for( uint ObjID : ObjIDs){
+
7914 getObjectPointer_private(ObjID)->setColor(color);
+
7915 }
+
7916}
+
+
7917
+
+
7918bool Context::doesObjectContainPrimitive(uint ObjID, uint UUID ){
+
7919 return getObjectPointer_private(ObjID)->doesObjectContainPrimitive( UUID );
+
7920}
+
+
7921
+
+
7922void Context::overrideObjectTextureColor(uint ObjID) {
+
7923 getObjectPointer_private(ObjID)->overrideTextureColor();
+
7924}
+
+
7925
+
+
7926void Context::overrideObjectTextureColor( const std::vector<uint> &ObjIDs) {
+
7927 for( uint ObjID : ObjIDs ) {
+
7928 getObjectPointer_private(ObjID)->overrideTextureColor();
+
7929 }
+
7930}
+
+
7931
+
+
7932void Context::useObjectTextureColor(uint ObjID) {
+
7933 getObjectPointer_private(ObjID)->useTextureColor();
+
7934}
+
+
7935
+
+
7936void Context::useObjectTextureColor( const std::vector<uint> &ObjIDs) {
+
7937 for( uint ObjID : ObjIDs ) {
+
7938 getObjectPointer_private(ObjID)->useTextureColor();
+
7939 }
+
7940}
+
+
7941
+
+
7942void Context::getObjectBoundingBox( uint ObjID, vec3 &min_corner, vec3 &max_corner ) const {
+
7943 std::vector<uint> ObjIDs{ObjID};
+
7944 getObjectBoundingBox(ObjIDs,min_corner,max_corner);
+
7945}
+
+
7946
+
+
7947void Context::getObjectBoundingBox( const std::vector<uint> &ObjIDs, vec3 &min_corner, vec3 &max_corner ) const{
+
7948
+
7949 uint o=0;
+
7950 for( uint ObjID : ObjIDs ) {
+
7951
+
7952 if ( objects.find(ObjID) == objects.end()){
+
7953 helios_runtime_error("ERROR (Context::getObjectBoundingBox): ObjectID of " + std::to_string(ObjID) + " does not exist in the Context.");
+
7954 }
+
7955
+
7956 const std::vector<uint> &UUIDs = objects.at(ObjID)->getPrimitiveUUIDs();
+
7957
+
7958 uint p=0;
+
7959 for (uint UUID: UUIDs) {
+
7960
+
7961 const std::vector<vec3> &vertices = getPrimitiveVertices(UUID);
+
7962
+
7963 if( p==0 && o==0 ){
+
7964 min_corner = vertices.front();
+
7965 max_corner = min_corner;
+
7966 p++;
+
7967 continue;
+
7968 }
+
7969
+
7970 for (const vec3 &vert: vertices) {
+
7971 if (vert.x < min_corner.x) {
+
7972 min_corner.x = vert.x;
+
7973 }
+
7974 if (vert.y < min_corner.y) {
+
7975 min_corner.y = vert.y;
+
7976 }
+
7977 if (vert.z < min_corner.z) {
+
7978 min_corner.z = vert.z;
+
7979 }
+
7980 if (vert.x > max_corner.x) {
+
7981 max_corner.x = vert.x;
+
7982 }
+
7983 if (vert.y > max_corner.y) {
+
7984 max_corner.y = vert.y;
+
7985 }
+
7986 if (vert.z > max_corner.z) {
+
7987 max_corner.z = vert.z;
+
7988 }
+
7989 }
+
7990 }
+
7991
+
7992 o++;
+
7993 }
+
7994
7995}
7996
-
-
7997helios::vec2 Context::getTileObjectSize(uint ObjID) const {
-
7998 return getTileObjectPointer_private(ObjID)->getSize();
-
7999}
-
-
8000
-
-
8001helios::int2 Context::getTileObjectSubdivisionCount(uint ObjID) const {
-
8002 return getTileObjectPointer_private(ObjID)->getSubdivisionCount();
-
8003}
-
-
8004
-
-
8005helios::vec3 Context::getTileObjectNormal(uint ObjID) const {
-
8006 return getTileObjectPointer_private(ObjID)->getNormal();
-
8007}
-
-
8008
-
-
8009std::vector<helios::vec2> Context::getTileObjectTextureUV(uint ObjID) const {
-
8010 return getTileObjectPointer_private(ObjID)->getTextureUV();
-
8011}
-
-
8012
-
-
8013std::vector<helios::vec3> Context::getTileObjectVertices(uint ObjID) const {
-
8014 return getTileObjectPointer_private(ObjID)->getVertices();
-
8015}
-
-
8016
-
-
8017helios::vec3 Context::getSphereObjectCenter(uint ObjID) const {
-
8018 return getSphereObjectPointer_private(ObjID)->getCenter();
-
8019}
-
-
8020
-
-
8021helios::vec3 Context::getSphereObjectRadius(uint ObjID) const {
-
8022 return getSphereObjectPointer_private(ObjID)->getRadius();
-
8023}
-
-
8024
-
-
8025uint Context::getSphereObjectSubdivisionCount(uint ObjID) const {
-
8026 return getSphereObjectPointer_private(ObjID)->getSubdivisionCount();
-
8027}
-
-
8028
-
-
8029float Context::getSphereObjectVolume(uint ObjID) const {
-
8030 return getSphereObjectPointer_private(ObjID)->getVolume();
+
7997Tile* Context::getTileObjectPointer_private(uint ObjID ) const{
+
7998 if( objects.find(ObjID) == objects.end() ){
+
7999 helios_runtime_error("ERROR (Context::getTileObjectPointer): ObjectID of " + std::to_string(ObjID) + " does not exist in the Context.");
+
8000 }else if( objects.at(ObjID)->getObjectType()!=OBJECT_TYPE_TILE ){
+
8001 helios_runtime_error("ERROR (Context::getTileObjectPointer): ObjectID of " + std::to_string(ObjID) + " is not a Tile Object.");
+
8002 }
+
8003 return dynamic_cast<Tile*>(objects.at(ObjID));
+
8004}
+
8005
+
8006Sphere* Context::getSphereObjectPointer_private(uint ObjID ) const{
+
8007 if( objects.find(ObjID) == objects.end() ){
+
8008 helios_runtime_error("ERROR (Context::getSphereObjectPointer): ObjectID of " + std::to_string(ObjID) + " does not exist in the Context.");
+
8009 }else if( objects.at(ObjID)->getObjectType()!=OBJECT_TYPE_SPHERE ){
+
8010 helios_runtime_error("ERROR (Context::getSphereObjectPointer): ObjectID of " + std::to_string(ObjID) + " is not a Sphere Object.");
+
8011 }
+
8012 return dynamic_cast<Sphere*>(objects.at(ObjID));
+
8013}
+
8014
+
8015Tube* Context::getTubeObjectPointer_private(uint ObjID ) const{
+
8016 if( objects.find(ObjID) == objects.end() ){
+
8017 helios_runtime_error("ERROR (Context::getTubeObjectPointer): ObjectID of " + std::to_string(ObjID) + " does not exist in the Context.");
+
8018 }else if( objects.at(ObjID)->getObjectType()!=OBJECT_TYPE_TUBE ){
+
8019 helios_runtime_error("ERROR (Context::getTubeObjectPointer): ObjectID of " + std::to_string(ObjID) + " is not a Tube Object.");
+
8020 }
+
8021 return dynamic_cast<Tube*>(objects.at(ObjID));
+
8022}
+
8023
+
8024Box* Context::getBoxObjectPointer_private(uint ObjID ) const{
+
8025 if( objects.find(ObjID) == objects.end() ){
+
8026 helios_runtime_error("ERROR (Context::getBoxObjectPointer): ObjectID of " + std::to_string(ObjID) + " does not exist in the Context.");
+
8027 }else if( objects.at(ObjID)->getObjectType()!=OBJECT_TYPE_BOX ){
+
8028 helios_runtime_error("ERROR (Context::getBoxObjectPointer): ObjectID of " + std::to_string(ObjID) + " is not a Box Object.");
+
8029 }
+
8030 return dynamic_cast<Box*>(objects.at(ObjID));
8031}
-
8032
-
-
8033uint Context::getTubeObjectSubdivisionCount(uint ObjID) const {
-
8034 return getTubeObjectPointer_private(ObjID)->getSubdivisionCount();
-
8035}
-
-
8036
-
-
8037std::vector<helios::vec3> Context::getTubeObjectNodes(uint ObjID) const {
-
8038 return getTubeObjectPointer_private(ObjID)->getNodes();
-
8039}
-
-
8040
-
-
8041std::vector<float> Context::getTubeObjectNodeRadii(uint ObjID) const {
-
8042 return getTubeObjectPointer_private(ObjID)->getNodeRadii();
-
8043}
-
-
8044
-
-
8045std::vector<RGBcolor> Context::getTubeObjectNodeColors(uint ObjID) const {
-
8046 return getTubeObjectPointer_private(ObjID)->getNodeColors();
-
8047}
-
-
8048
-
-
8049float Context::getTubeObjectVolume(uint ObjID) const {
-
8050 return getTubeObjectPointer_private(ObjID)->getVolume();
-
8051}
-
-
8052
-
-
8053float Context::getTubeObjectSegmentVolume( uint ObjID, uint segment_index ) const{
-
8054 return getTubeObjectPointer_private(ObjID)->getSegmentVolume(segment_index);
-
8055}
-
-
8056
-
-
8057void Context::appendTubeSegment(uint ObjID, const helios::vec3 &node_position, float node_radius, const RGBcolor &node_color ){
-
8058 if( objects.find(ObjID) == objects.end() ) {
-
8059 helios_runtime_error("ERROR (Context::appendTubeSegment): ObjectID of " + std::to_string(ObjID) + " does not exist in the Context.");
-
8060 }
-
8061 dynamic_cast<Tube*>(objects.at(ObjID))->appendTubeSegment(node_position, node_radius, node_color);
+
8033Disk* Context::getDiskObjectPointer_private(uint ObjID ) const{
+
8034 if( objects.find(ObjID) == objects.end() ){
+
8035 helios_runtime_error("ERROR (Context::getDiskObjectPointer): ObjectID of " + std::to_string(ObjID) + " does not exist in the Context.");
+
8036 }else if( objects.at(ObjID)->getObjectType()!=OBJECT_TYPE_DISK ){
+
8037 helios_runtime_error("ERROR (Context::getDiskObjectPointer): ObjectID of " + std::to_string(ObjID) + " is not a Disk Object.");
+
8038 }
+
8039 return dynamic_cast<Disk*>(objects.at(ObjID));
+
8040}
+
8041
+
8042Polymesh* Context::getPolymeshObjectPointer_private(uint ObjID ) const{
+
8043 if( objects.find(ObjID) == objects.end() ){
+
8044 helios_runtime_error("ERROR (Context::getPolymeshObjectPointer): ObjectID of " + std::to_string(ObjID) + " does not exist in the Context.");
+
8045 }else if( objects.at(ObjID)->getObjectType()!=OBJECT_TYPE_POLYMESH ){
+
8046 helios_runtime_error("ERROR (Context::getPolymeshObjectPointer): ObjectID of " + std::to_string(ObjID) + " is not a Polymesh Object.");
+
8047 }
+
8048 return dynamic_cast<Polymesh*>(objects.at(ObjID));
+
8049}
+
8050
+
8051Cone* Context::getConeObjectPointer_private(uint ObjID ) const{
+
8052 if( objects.find(ObjID) == objects.end() ){
+
8053 helios_runtime_error("ERROR (Context::getConeObjectPointer): ObjectID of " + std::to_string(ObjID) + " does not exist in the Context.");
+
8054 }else if( objects.at(ObjID)->getObjectType()!=OBJECT_TYPE_CONE ){
+
8055 helios_runtime_error("ERROR (Context::getConeObjectPointer): ObjectID of " + std::to_string(ObjID) + " is not a Cone Object.");
+
8056 }
+
8057 return dynamic_cast<Cone*>(objects.at(ObjID));
+
8058}
+
8059
+
+
8060helios::vec3 Context::getTileObjectCenter(uint ObjID) const {
+
8061 return getTileObjectPointer_private(ObjID)->getCenter();
8062}
8063
-
8064void Context::appendTubeSegment( uint ObjID, const helios::vec3 &node_position, float node_radius, const char* texturefile, const helios::vec2 &textureuv_ufrac ){
-
8065 if( objects.find(ObjID) == objects.end() ) {
-
8066 helios_runtime_error("ERROR (Context::appendTubeSegment): ObjectID of " + std::to_string(ObjID) + " does not exist in the Context.");
-
8067 }
-
8068 dynamic_cast<Tube*>(objects.at(ObjID))->appendTubeSegment(node_position, node_radius, texturefile, textureuv_ufrac);
-
8069}
-
-
8070
-
-
8071void Context::scaleTubeGirth( uint ObjID, float scale_factor ){
-
8072 if( objects.find(ObjID) == objects.end() ) {
-
8073 helios_runtime_error("ERROR (Context::scaleTubeGirth): ObjectID of " + std::to_string(ObjID) + " does not exist in the Context.");
-
8074 }
-
8075 dynamic_cast<Tube*>(objects.at(ObjID))->scaleTubeGirth(scale_factor);
-
8076}
-
-
8077
-
-
8078void Context::setTubeRadii( uint ObjID, const std::vector<float> &node_radii ){
-
8079 if( objects.find(ObjID) == objects.end() ) {
-
8080 helios_runtime_error("ERROR (Context::setTubeRadii): ObjectID of " + std::to_string(ObjID) + " does not exist in the Context.");
-
8081 }
-
8082 dynamic_cast<Tube*>(objects.at(ObjID))->setTubeRadii(node_radii);
-
8083}
-
-
8084
-
-
8085void Context::scaleTubeLength( uint ObjID, float scale_factor ){
-
8086 if( objects.find(ObjID) == objects.end() ) {
-
8087 helios_runtime_error("ERROR (Context::scaleTubeLength): ObjectID of " + std::to_string(ObjID) + " does not exist in the Context.");
-
8088 }
-
8089 dynamic_cast<Tube*>(objects.at(ObjID))->scaleTubeLength(scale_factor);
+
8064helios::vec2 Context::getTileObjectSize(uint ObjID) const {
+
8065 return getTileObjectPointer_private(ObjID)->getSize();
+
8066}
+
+
8067
+
+
8068helios::int2 Context::getTileObjectSubdivisionCount(uint ObjID) const {
+
8069 return getTileObjectPointer_private(ObjID)->getSubdivisionCount();
+
8070}
+
+
8071
+
+
8072helios::vec3 Context::getTileObjectNormal(uint ObjID) const {
+
8073 return getTileObjectPointer_private(ObjID)->getNormal();
+
8074}
+
+
8075
+
+
8076std::vector<helios::vec2> Context::getTileObjectTextureUV(uint ObjID) const {
+
8077 return getTileObjectPointer_private(ObjID)->getTextureUV();
+
8078}
+
+
8079
+
+
8080std::vector<helios::vec3> Context::getTileObjectVertices(uint ObjID) const {
+
8081 return getTileObjectPointer_private(ObjID)->getVertices();
+
8082}
+
+
8083
+
+
8084helios::vec3 Context::getSphereObjectCenter(uint ObjID) const {
+
8085 return getSphereObjectPointer_private(ObjID)->getCenter();
+
8086}
+
+
8087
+
+
8088helios::vec3 Context::getSphereObjectRadius(uint ObjID) const {
+
8089 return getSphereObjectPointer_private(ObjID)->getRadius();
8090}
8091
-
8092void Context::setTubeNodes( uint ObjID, const std::vector<helios::vec3> &node_xyz ){
-
8093 if( objects.find(ObjID) == objects.end() ) {
-
8094 helios_runtime_error("ERROR (Context::setTubeNodes): ObjectID of " + std::to_string(ObjID) + " does not exist in the Context.");
-
8095 }
-
8096 dynamic_cast<Tube*>(objects.at(ObjID))->setTubeNodes(node_xyz);
-
8097}
-
-
8098
-
-
8099helios::vec3 Context::getBoxObjectCenter(uint ObjID) const {
-
8100 return getBoxObjectPointer_private(ObjID)->getCenter();
-
8101}
-
-
8102
-
-
8103helios::vec3 Context::getBoxObjectSize(uint ObjID) const {
-
8104 return getBoxObjectPointer_private(ObjID)->getSize();
-
8105}
-
-
8106
-
-
8107helios::int3 Context::getBoxObjectSubdivisionCount(uint ObjID) const {
-
8108 return getBoxObjectPointer_private(ObjID)->getSubdivisionCount();
-
8109}
-
-
8110
-
-
8111float Context::getBoxObjectVolume(uint ObjID) const {
-
8112 return getBoxObjectPointer_private(ObjID)->getVolume();
-
8113}
-
-
8114
-
-
8115helios::vec3 Context::getDiskObjectCenter(uint ObjID) const {
-
8116 return getDiskObjectPointer_private(ObjID)->getCenter();
-
8117}
-
-
8118
-
-
8119helios::vec2 Context::getDiskObjectSize(uint ObjID) const {
-
8120 return getDiskObjectPointer_private(ObjID)->getSize();
-
8121}
-
-
8122
-
-
8123uint Context::getDiskObjectSubdivisionCount(uint ObjID) const {
-
8124 return getDiskObjectPointer_private(ObjID)->getSubdivisionCount().x;
-
8125}
-
-
8126
-
-
8127uint Context::getConeObjectSubdivisionCount(uint ObjID) const {
-
8128 return getConeObjectPointer_private(ObjID)->getSubdivisionCount();
+
8092uint Context::getSphereObjectSubdivisionCount(uint ObjID) const {
+
8093 return getSphereObjectPointer_private(ObjID)->getSubdivisionCount();
+
8094}
+
+
8095
+
+
8096float Context::getSphereObjectVolume(uint ObjID) const {
+
8097 return getSphereObjectPointer_private(ObjID)->getVolume();
+
8098}
+
+
8099
+
+
8100uint Context::getTubeObjectSubdivisionCount(uint ObjID) const {
+
8101 return getTubeObjectPointer_private(ObjID)->getSubdivisionCount();
+
8102}
+
+
8103
+
+
8104std::vector<helios::vec3> Context::getTubeObjectNodes(uint ObjID) const {
+
8105 return getTubeObjectPointer_private(ObjID)->getNodes();
+
8106}
+
+
8107
+
+
8108std::vector<float> Context::getTubeObjectNodeRadii(uint ObjID) const {
+
8109 return getTubeObjectPointer_private(ObjID)->getNodeRadii();
+
8110}
+
+
8111
+
+
8112std::vector<RGBcolor> Context::getTubeObjectNodeColors(uint ObjID) const {
+
8113 return getTubeObjectPointer_private(ObjID)->getNodeColors();
+
8114}
+
+
8115
+
+
8116float Context::getTubeObjectVolume(uint ObjID) const {
+
8117 return getTubeObjectPointer_private(ObjID)->getVolume();
+
8118}
+
+
8119
+
+
8120float Context::getTubeObjectSegmentVolume( uint ObjID, uint segment_index ) const{
+
8121 return getTubeObjectPointer_private(ObjID)->getSegmentVolume(segment_index);
+
8122}
+
+
8123
+
+
8124void Context::appendTubeSegment(uint ObjID, const helios::vec3 &node_position, float node_radius, const RGBcolor &node_color ){
+
8125 if( objects.find(ObjID) == objects.end() ) {
+
8126 helios_runtime_error("ERROR (Context::appendTubeSegment): ObjectID of " + std::to_string(ObjID) + " does not exist in the Context.");
+
8127 }
+
8128 dynamic_cast<Tube*>(objects.at(ObjID))->appendTubeSegment(node_position, node_radius, node_color);
8129}
8130
-
8131std::vector<helios::vec3> Context::getConeObjectNodes(uint ObjID) const {
-
8132 return getConeObjectPointer_private(ObjID)->getNodeCoordinates();
-
8133}
-
-
8134
-
-
8135std::vector<float> Context::getConeObjectNodeRadii(uint ObjID) const {
-
8136 return getConeObjectPointer_private(ObjID)->getNodeRadii();
-
8137}
-
-
8138
-
-
8139helios::vec3 Context::getConeObjectNode(uint ObjID, int number) const {
-
8140 return getConeObjectPointer_private(ObjID)->getNodeCoordinate(number);
-
8141}
-
-
8142
-
-
8143float Context::getConeObjectNodeRadius(uint ObjID, int number) const {
-
8144 return getConeObjectPointer_private(ObjID)->getNodeRadius(number);
-
8145}
-
-
8146
-
-
8147helios::vec3 Context::getConeObjectAxisUnitVector(uint ObjID) const {
-
8148 return getConeObjectPointer_private(ObjID)->getAxisUnitVector();
-
8149}
-
-
8150
-
-
8151float Context::getConeObjectLength(uint ObjID) const {
-
8152 return getConeObjectPointer_private(ObjID)->getLength();
-
8153}
-
-
8154
-
-
8155float Context::getConeObjectVolume(uint ObjID) const {
-
8156 return getConeObjectPointer_private(ObjID)->getVolume();
+
8131void Context::appendTubeSegment( uint ObjID, const helios::vec3 &node_position, float node_radius, const char* texturefile, const helios::vec2 &textureuv_ufrac ){
+
8132 if( objects.find(ObjID) == objects.end() ) {
+
8133 helios_runtime_error("ERROR (Context::appendTubeSegment): ObjectID of " + std::to_string(ObjID) + " does not exist in the Context.");
+
8134 }
+
8135 dynamic_cast<Tube*>(objects.at(ObjID))->appendTubeSegment(node_position, node_radius, texturefile, textureuv_ufrac);
+
8136}
+
+
8137
+
+
8138void Context::scaleTubeGirth( uint ObjID, float scale_factor ){
+
8139 if( objects.find(ObjID) == objects.end() ) {
+
8140 helios_runtime_error("ERROR (Context::scaleTubeGirth): ObjectID of " + std::to_string(ObjID) + " does not exist in the Context.");
+
8141 }
+
8142 dynamic_cast<Tube*>(objects.at(ObjID))->scaleTubeGirth(scale_factor);
+
8143}
+
+
8144
+
+
8145void Context::setTubeRadii( uint ObjID, const std::vector<float> &node_radii ){
+
8146 if( objects.find(ObjID) == objects.end() ) {
+
8147 helios_runtime_error("ERROR (Context::setTubeRadii): ObjectID of " + std::to_string(ObjID) + " does not exist in the Context.");
+
8148 }
+
8149 dynamic_cast<Tube*>(objects.at(ObjID))->setTubeRadii(node_radii);
+
8150}
+
+
8151
+
+
8152void Context::scaleTubeLength( uint ObjID, float scale_factor ){
+
8153 if( objects.find(ObjID) == objects.end() ) {
+
8154 helios_runtime_error("ERROR (Context::scaleTubeLength): ObjectID of " + std::to_string(ObjID) + " does not exist in the Context.");
+
8155 }
+
8156 dynamic_cast<Tube*>(objects.at(ObjID))->scaleTubeLength(scale_factor);
8157}
8158
-
8159float Context::getPolymeshObjectVolume(uint ObjID) const {
-
8160 return getPolymeshObjectPointer_private(ObjID)->getVolume();
-
8161}
+
8159void Context::setTubeNodes( uint ObjID, const std::vector<helios::vec3> &node_xyz ){
+
8160 if( objects.find(ObjID) == objects.end() ) {
+
8161 helios_runtime_error("ERROR (Context::setTubeNodes): ObjectID of " + std::to_string(ObjID) + " does not exist in the Context.");
+
8162 }
+
8163 dynamic_cast<Tube*>(objects.at(ObjID))->setTubeNodes(node_xyz);
+
8164}
+
+
8165
+
+
8166helios::vec3 Context::getBoxObjectCenter(uint ObjID) const {
+
8167 return getBoxObjectPointer_private(ObjID)->getCenter();
+
8168}
+
+
8169
+
+
8170helios::vec3 Context::getBoxObjectSize(uint ObjID) const {
+
8171 return getBoxObjectPointer_private(ObjID)->getSize();
+
8172}
+
+
8173
+
+
8174helios::int3 Context::getBoxObjectSubdivisionCount(uint ObjID) const {
+
8175 return getBoxObjectPointer_private(ObjID)->getSubdivisionCount();
+
8176}
+
+
8177
+
+
8178float Context::getBoxObjectVolume(uint ObjID) const {
+
8179 return getBoxObjectPointer_private(ObjID)->getVolume();
+
8180}
+
+
8181
+
+
8182helios::vec3 Context::getDiskObjectCenter(uint ObjID) const {
+
8183 return getDiskObjectPointer_private(ObjID)->getCenter();
+
8184}
+
+
8185
+
+
8186helios::vec2 Context::getDiskObjectSize(uint ObjID) const {
+
8187 return getDiskObjectPointer_private(ObjID)->getSize();
+
8188}
+
+
8189
+
+
8190uint Context::getDiskObjectSubdivisionCount(uint ObjID) const {
+
8191 return getDiskObjectPointer_private(ObjID)->getSubdivisionCount().x;
+
8192}
+
+
8193
+
+
8194uint Context::getConeObjectSubdivisionCount(uint ObjID) const {
+
8195 return getConeObjectPointer_private(ObjID)->getSubdivisionCount();
+
8196}
+
+
8197
+
+
8198std::vector<helios::vec3> Context::getConeObjectNodes(uint ObjID) const {
+
8199 return getConeObjectPointer_private(ObjID)->getNodeCoordinates();
+
8200}
+
+
8201
+
+
8202std::vector<float> Context::getConeObjectNodeRadii(uint ObjID) const {
+
8203 return getConeObjectPointer_private(ObjID)->getNodeRadii();
+
8204}
+
+
8205
+
+
8206helios::vec3 Context::getConeObjectNode(uint ObjID, int number) const {
+
8207 return getConeObjectPointer_private(ObjID)->getNodeCoordinate(number);
+
8208}
+
+
8209
+
+
8210float Context::getConeObjectNodeRadius(uint ObjID, int number) const {
+
8211 return getConeObjectPointer_private(ObjID)->getNodeRadius(number);
+
8212}
+
+
8213
+
+
8214helios::vec3 Context::getConeObjectAxisUnitVector(uint ObjID) const {
+
8215 return getConeObjectPointer_private(ObjID)->getAxisUnitVector();
+
8216}
+
+
8217
+
+
8218float Context::getConeObjectLength(uint ObjID) const {
+
8219 return getConeObjectPointer_private(ObjID)->getLength();
+
8220}
+
+
8221
+
+
8222float Context::getConeObjectVolume(uint ObjID) const {
+
8223 return getConeObjectPointer_private(ObjID)->getVolume();
+
8224}
+
+
8225
+
+
8226float Context::getPolymeshObjectVolume(uint ObjID) const {
+
8227 return getPolymeshObjectPointer_private(ObjID)->getVolume();
+
8228}
helios::HeliosDataType
HeliosDataType
Data types.
Definition Context.h:41
@@ -9007,276 +9074,277 @@
helios::OBJECT_TYPE_TILE
@ OBJECT_TYPE_TILE
< Tile
Definition Context.h:130
helios::OBJECT_TYPE_SPHERE
@ OBJECT_TYPE_SPHERE
< Sphere
Definition Context.h:132
helios::Box
Box compound object class.
Definition Context.h:759
-
helios::Box::getVolume
float getVolume() const
Get the volume of the box object.
Definition Context.cpp:3914
-
helios::Box::setSubdivisionCount
void setSubdivisionCount(const helios::int3 &subdiv)
Set the number of box sub-patch divisions.
Definition Context.cpp:3910
-
helios::Box::getSubdivisionCount
helios::int3 getSubdivisionCount() const
Get the number of sub-patch divisions of the box object in each Cartesian direction.
Definition Context.cpp:3906
-
helios::Box::getCenter
vec3 getCenter() const
Get the Cartesian coordinates of the center of the box object.
Definition Context.cpp:3890
-
helios::Box::Box
Box(uint a_OID, const std::vector< uint > &a_UUIDs, const int3 &a_subdiv, const char *a_texturefile, helios::Context *a_context)
Default constructor.
Definition Context.cpp:3851
-
helios::Box::getSize
vec3 getSize() const
Get the dimensions of the box object in each Cartesian direction.
Definition Context.cpp:3871
+
helios::Box::getVolume
float getVolume() const
Get the volume of the box object.
Definition Context.cpp:3966
+
helios::Box::setSubdivisionCount
void setSubdivisionCount(const helios::int3 &subdiv)
Set the number of box sub-patch divisions.
Definition Context.cpp:3962
+
helios::Box::getSubdivisionCount
helios::int3 getSubdivisionCount() const
Get the number of sub-patch divisions of the box object in each Cartesian direction.
Definition Context.cpp:3958
+
helios::Box::getCenter
vec3 getCenter() const
Get the Cartesian coordinates of the center of the box object.
Definition Context.cpp:3942
+
helios::Box::Box
Box(uint a_OID, const std::vector< uint > &a_UUIDs, const int3 &a_subdiv, const char *a_texturefile, helios::Context *a_context)
Default constructor.
Definition Context.cpp:3903
+
helios::Box::getSize
vec3 getSize() const
Get the dimensions of the box object in each Cartesian direction.
Definition Context.cpp:3923
-
helios::CompoundObject::rotate
void rotate(float rotation_radians, const char *rotation_axis_xyz_string)
Method to rotate a Compound Object about the x-, y-, or z-axis.
Definition Context.cpp:2362
-
helios::CompoundObject::setPrimitiveUUIDs
void setPrimitiveUUIDs(const std::vector< uint > &UUIDs)
Method to set the UUIDs of object child primitives.
Definition Context.cpp:2502
-
helios::CompoundObject::getPrimitiveCount
uint getPrimitiveCount() const
Return the number of primitives contained in the object.
Definition Context.cpp:2236
-
helios::CompoundObject::overrideTextureColor
void overrideTextureColor()
Override the color in the texture map for all primitives in the Compound Object, in which case the pr...
Definition Context.cpp:2306
-
helios::CompoundObject::getObjectID
uint getObjectID() const
Get the unique identifier for the object.
Definition Context.cpp:2228
-
helios::CompoundObject::getTextureFile
std::string getTextureFile() const
Method to return the texture map file of an Object.
Definition Context.cpp:2334
-
helios::CompoundObject::scale
void scale(const helios::vec3 &scale)
Method to scale a compound object in the x-, y- and z-directions.
Definition Context.cpp:2456
-
helios::CompoundObject::deleteChildPrimitive
void deleteChildPrimitive(uint UUID)
Delete a single child member of the object.
Definition Context.cpp:2506
-
helios::CompoundObject::hasTexture
bool hasTexture() const
Method to check whether this object has texture data.
Definition Context.cpp:2326
-
helios::CompoundObject::setTransformationMatrix
void setTransformationMatrix(float(&T)[16])
Method to set the Affine transformation matrix of a Compound Object.
Definition Context.cpp:2494
-
helios::CompoundObject::scaleAboutCenter
void scaleAboutCenter(const helios::vec3 &scale)
Method to scale a compound object in the x-, y- and z-directions.
Definition Context.cpp:2460
-
helios::CompoundObject::scaleAboutPoint
void scaleAboutPoint(const helios::vec3 &scale, const helios::vec3 &point)
Method to scale a compound object in the x-, y- and z-directions.
Definition Context.cpp:2464
-
helios::CompoundObject::arePrimitivesComplete
bool arePrimitivesComplete() const
Method to query whether all object primitives are in tact.
Definition Context.cpp:2521
-
helios::CompoundObject::getArea
float getArea() const
Calculate the total one-sided surface area of the Compound Object.
Definition Context.cpp:2270
-
helios::CompoundObject::translate
void translate(const helios::vec3 &shift)
Method to translate/shift a Compound Object.
Definition Context.cpp:2338
-
helios::CompoundObject::getObjectType
helios::ObjectType getObjectType() const
Get an enumeration specifying the type of the object.
Definition Context.cpp:2232
-
helios::CompoundObject::getPrimitiveUUIDs
std::vector< uint > getPrimitiveUUIDs() const
Get the UUIDs for all primitives contained in the object.
Definition Context.cpp:2241
-
helios::CompoundObject::getTransformationMatrix
void getTransformationMatrix(float(&T)[16]) const
Method to return the Affine transformation matrix of a Compound Object.
Definition Context.cpp:2488
-
helios::CompoundObject::setColor
void setColor(const helios::RGBcolor &color)
Method to set the diffuse color for all primitives in the Compound Object.
Definition Context.cpp:2286
-
helios::CompoundObject::useTextureColor
void useTextureColor()
For all primitives in the Compound Object, use the texture map to color the primitives rather than th...
Definition Context.cpp:2316
-
helios::CompoundObject::doesObjectContainPrimitive
bool doesObjectContainPrimitive(uint UUID)
Check whether a primitive is a member of the object based on its UUID.
Definition Context.cpp:2247
-
helios::CompoundObject::getObjectCenter
helios::vec3 getObjectCenter() const
Calculate the Cartesian (x,y,z) point of the center of a bounding box for the Compound Object.
Definition Context.cpp:2253
+
helios::CompoundObject::rotate
void rotate(float rotation_radians, const char *rotation_axis_xyz_string)
Method to rotate a Compound Object about the x-, y-, or z-axis.
Definition Context.cpp:2357
+
helios::CompoundObject::setPrimitiveUUIDs
void setPrimitiveUUIDs(const std::vector< uint > &UUIDs)
Method to set the UUIDs of object child primitives.
Definition Context.cpp:2497
+
helios::CompoundObject::getPrimitiveCount
uint getPrimitiveCount() const
Return the number of primitives contained in the object.
Definition Context.cpp:2231
+
helios::CompoundObject::overrideTextureColor
void overrideTextureColor()
Override the color in the texture map for all primitives in the Compound Object, in which case the pr...
Definition Context.cpp:2301
+
helios::CompoundObject::getObjectID
uint getObjectID() const
Get the unique identifier for the object.
Definition Context.cpp:2223
+
helios::CompoundObject::getTextureFile
std::string getTextureFile() const
Method to return the texture map file of an Object.
Definition Context.cpp:2329
+
helios::CompoundObject::scale
void scale(const helios::vec3 &scale)
Method to scale a compound object in the x-, y- and z-directions.
Definition Context.cpp:2451
+
helios::CompoundObject::deleteChildPrimitive
void deleteChildPrimitive(uint UUID)
Delete a single child member of the object.
Definition Context.cpp:2501
+
helios::CompoundObject::hasTexture
bool hasTexture() const
Method to check whether this object has texture data.
Definition Context.cpp:2321
+
helios::CompoundObject::setTransformationMatrix
void setTransformationMatrix(float(&T)[16])
Method to set the Affine transformation matrix of a Compound Object.
Definition Context.cpp:2489
+
helios::CompoundObject::scaleAboutCenter
void scaleAboutCenter(const helios::vec3 &scale)
Method to scale a compound object in the x-, y- and z-directions.
Definition Context.cpp:2455
+
helios::CompoundObject::scaleAboutPoint
void scaleAboutPoint(const helios::vec3 &scale, const helios::vec3 &point)
Method to scale a compound object in the x-, y- and z-directions.
Definition Context.cpp:2459
+
helios::CompoundObject::arePrimitivesComplete
bool arePrimitivesComplete() const
Method to query whether all object primitives are in tact.
Definition Context.cpp:2516
+
helios::CompoundObject::getArea
float getArea() const
Calculate the total one-sided surface area of the Compound Object.
Definition Context.cpp:2265
+
helios::CompoundObject::translate
void translate(const helios::vec3 &shift)
Method to translate/shift a Compound Object.
Definition Context.cpp:2333
+
helios::CompoundObject::getObjectType
helios::ObjectType getObjectType() const
Get an enumeration specifying the type of the object.
Definition Context.cpp:2227
+
helios::CompoundObject::getPrimitiveUUIDs
std::vector< uint > getPrimitiveUUIDs() const
Get the UUIDs for all primitives contained in the object.
Definition Context.cpp:2236
+
helios::CompoundObject::getTransformationMatrix
void getTransformationMatrix(float(&T)[16]) const
Method to return the Affine transformation matrix of a Compound Object.
Definition Context.cpp:2483
+
helios::CompoundObject::setColor
void setColor(const helios::RGBcolor &color)
Method to set the diffuse color for all primitives in the Compound Object.
Definition Context.cpp:2281
+
helios::CompoundObject::useTextureColor
void useTextureColor()
For all primitives in the Compound Object, use the texture map to color the primitives rather than th...
Definition Context.cpp:2311
+
helios::CompoundObject::doesObjectContainPrimitive
bool doesObjectContainPrimitive(uint UUID)
Check whether a primitive is a member of the object based on its UUID.
Definition Context.cpp:2242
+
helios::CompoundObject::getObjectCenter
helios::vec3 getObjectCenter() const
Calculate the Cartesian (x,y,z) point of the center of a bounding box for the Compound Object.
Definition Context.cpp:2248
helios::Cone
Cone compound object class.
Definition Context.h:847
-
helios::Cone::getSubdivisionCount
uint getSubdivisionCount() const
Get the number of sub-triangle divisions of the cone object.
Definition Context.cpp:4081
-
helios::Cone::Cone
Cone(uint a_OID, const std::vector< uint > &a_UUIDs, const vec3 &a_node0, const vec3 &a_node1, float a_radius0, float a_radius1, uint a_subdiv, const char *a_texturefile, helios::Context *a_context)
Default constructor.
Definition Context.cpp:4017
-
helios::Cone::getNodeRadius
float getNodeRadius(int node_index) const
Get the radius of a cone object node.
Definition Context.cpp:4073
-
helios::Cone::setSubdivisionCount
void setSubdivisionCount(uint subdiv)
Set the number of radial sub-triangle divisions.
Definition Context.cpp:4085
-
helios::Cone::getNodeCoordinate
helios::vec3 getNodeCoordinate(int node_index) const
Get the Cartesian coordinates of a cone object node.
Definition Context.cpp:4054
-
helios::Cone::getAxisUnitVector
helios::vec3 getAxisUnitVector() const
Get a unit vector pointing in the direction of the cone central axis.
Definition Context.cpp:4089
-
helios::Cone::getNodeCoordinates
std::vector< helios::vec3 > getNodeCoordinates() const
Get the Cartesian coordinates of each of the cone object nodes.
Definition Context.cpp:4040
-
helios::Cone::scaleLength
void scaleLength(float S)
Method to scale the length of the cone.
Definition Context.cpp:4122
-
helios::Cone::scaleGirth
void scaleGirth(float S)
Method to scale the girth of the cone.
Definition Context.cpp:4171
-
helios::Cone::getLength
float getLength() const
Get the length of the cone along the axial direction.
Definition Context.cpp:4107
-
helios::Cone::getNodeRadii
std::vector< float > getNodeRadii() const
Get the radius at each of the cone object nodes.
Definition Context.cpp:4069
-
helios::Cone::getVolume
float getVolume() const
Get the volume of the cone object.
Definition Context.cpp:4212
+
helios::Cone::getSubdivisionCount
uint getSubdivisionCount() const
Get the number of sub-triangle divisions of the cone object.
Definition Context.cpp:4133
+
helios::Cone::Cone
Cone(uint a_OID, const std::vector< uint > &a_UUIDs, const vec3 &a_node0, const vec3 &a_node1, float a_radius0, float a_radius1, uint a_subdiv, const char *a_texturefile, helios::Context *a_context)
Default constructor.
Definition Context.cpp:4069
+
helios::Cone::getNodeRadius
float getNodeRadius(int node_index) const
Get the radius of a cone object node.
Definition Context.cpp:4125
+
helios::Cone::setSubdivisionCount
void setSubdivisionCount(uint subdiv)
Set the number of radial sub-triangle divisions.
Definition Context.cpp:4137
+
helios::Cone::getNodeCoordinate
helios::vec3 getNodeCoordinate(int node_index) const
Get the Cartesian coordinates of a cone object node.
Definition Context.cpp:4106
+
helios::Cone::getAxisUnitVector
helios::vec3 getAxisUnitVector() const
Get a unit vector pointing in the direction of the cone central axis.
Definition Context.cpp:4141
+
helios::Cone::getNodeCoordinates
std::vector< helios::vec3 > getNodeCoordinates() const
Get the Cartesian coordinates of each of the cone object nodes.
Definition Context.cpp:4092
+
helios::Cone::scaleLength
void scaleLength(float S)
Method to scale the length of the cone.
Definition Context.cpp:4174
+
helios::Cone::scaleGirth
void scaleGirth(float S)
Method to scale the girth of the cone.
Definition Context.cpp:4223
+
helios::Cone::getLength
float getLength() const
Get the length of the cone along the axial direction.
Definition Context.cpp:4159
+
helios::Cone::getNodeRadii
std::vector< float > getNodeRadii() const
Get the radius at each of the cone object nodes.
Definition Context.cpp:4121
+
helios::Cone::getVolume
float getVolume() const
Get the volume of the cone object.
Definition Context.cpp:4264
helios::Context
Stores the state associated with simulation.
Definition Context.h:1882
helios::Context::copyPrimitiveData
void copyPrimitiveData(uint sourceUUID, uint destinationUUID)
copy all primitive data from one primitive to another
Definition Context_data.cpp:1192
-
helios::Context::getTileObjectTextureUV
std::vector< helios::vec2 > getTileObjectTextureUV(uint ObjID) const
get the texture UV coordinates of a tile object from the context
Definition Context.cpp:8009
-
helios::Context::setTileObjectSubdivisionCount
void setTileObjectSubdivisionCount(const std::vector< uint > &ObjectIDs, const int2 &new_subdiv)
Change the subdivision count of a tile object.
Definition Context.cpp:2967
-
helios::Context::setPrimitiveColor
void setPrimitiveColor(uint UUID, const helios::RGBcolor &color)
Method to set the diffuse color of a Primitive.
Definition Context.cpp:7016
-
helios::Context::getPrimitiveTransformationMatrix
void getPrimitiveTransformationMatrix(uint UUID, float(&T)[16]) const
Method to return the Affine transformation matrix of a Primitive.
Definition Context.cpp:6985
-
helios::Context::scaleTubeLength
void scaleTubeLength(uint ObjID, float scale_factor)
Scale the length of a tube object by an arbitrary factor for all tube nodes.
Definition Context.cpp:8085
-
helios::Context::isObjectHidden
bool isObjectHidden(uint ObjID) const
Query if an object is hidden.
Definition Context.cpp:7790
-
helios::Context::scaleObjectAboutPoint
void scaleObjectAboutPoint(uint ObjID, const helios::vec3 &scalefact, const helios::vec3 &point)
Method to scale a compound object in the x-, y- and z-directions.
Definition Context.cpp:2882
-
helios::Context::getTubeObjectSegmentVolume
float getTubeObjectSegmentVolume(uint ObjID, uint segment_index) const
get the volume of a segment within a Tube object
Definition Context.cpp:8053
-
helios::Context::getPrimitiveColor
helios::RGBcolor getPrimitiveColor(uint UUID) const
Method to return the diffuse color of a Primitive.
Definition Context.cpp:7004
-
helios::Context::copyObject
uint copyObject(uint ObjID)
Make a copy of a Compound Objects from the context.
Definition Context.cpp:2627
-
helios::Context::randn
float randn()
Draw a random number from a normal distribution with mean = 0, stddev = 1.
Definition Context.cpp:1199
-
helios::Context::getDiskObjectPointer
Disk * getDiskObjectPointer(uint ObjID) const
Get a pointer to a Disk Compound Object.
Definition Context.cpp:3932
-
helios::Context::overrideObjectTextureColor
void overrideObjectTextureColor(uint ObjID)
Override the color in the texture map for all primitives in the Compound Object, in which case the pr...
Definition Context.cpp:7855
-
helios::Context::getUniquePrimitiveParentObjectIDs
std::vector< uint > getUniquePrimitiveParentObjectIDs(const std::vector< uint > &UUIDs) const
Method to return unique parent object IDs for a vector of primitive UUIDs.
Definition Context.cpp:6899
-
helios::Context::translatePrimitive
void translatePrimitive(uint UUID, const vec3 &shift)
Translate a primitive using its UUID.
Definition Context.cpp:1401
-
helios::Context::getObjectBoundingBox
void getObjectBoundingBox(uint ObjID, vec3 &min_corner, vec3 &max_corner) const
Get the axis-aligned bounding box for a single object.
Definition Context.cpp:7875
-
helios::Context::getPrimitiveArea
float getPrimitiveArea(uint UUID) const
Method to return the surface area of a Primitive.
Definition Context.cpp:6930
-
helios::Context::getBoxObjectPointer
Box * getBoxObjectPointer(uint ObjID) const
Get a pointer to a Box Compound Object.
Definition Context.cpp:3864
-
helios::Context::cleanDeletedUUIDs
void cleanDeletedUUIDs(std::vector< uint > &UUIDs) const
Delete UUIDs from vector if primitives no longer exist (1D vector)
Definition Context.cpp:1788
-
helios::Context::getConeObjectSubdivisionCount
uint getConeObjectSubdivisionCount(uint ObjID) const
get the subdivision count of a Cone object from the context
Definition Context.cpp:8127
-
helios::Context::getDiskObjectCenter
helios::vec3 getDiskObjectCenter(uint ObjID) const
get the center of a Disk object from the context
Definition Context.cpp:8115
+
helios::Context::getTileObjectTextureUV
std::vector< helios::vec2 > getTileObjectTextureUV(uint ObjID) const
get the texture UV coordinates of a tile object from the context
Definition Context.cpp:8076
+
helios::Context::setTileObjectSubdivisionCount
void setTileObjectSubdivisionCount(const std::vector< uint > &ObjectIDs, const int2 &new_subdiv)
Change the subdivision count of a tile object.
Definition Context.cpp:2962
+
helios::Context::setPrimitiveColor
void setPrimitiveColor(uint UUID, const helios::RGBcolor &color)
Method to set the diffuse color of a Primitive.
Definition Context.cpp:7083
+
helios::Context::getPrimitiveTransformationMatrix
void getPrimitiveTransformationMatrix(uint UUID, float(&T)[16]) const
Method to return the Affine transformation matrix of a Primitive.
Definition Context.cpp:7052
+
helios::Context::scaleTubeLength
void scaleTubeLength(uint ObjID, float scale_factor)
Scale the length of a tube object by an arbitrary factor for all tube nodes.
Definition Context.cpp:8152
+
helios::Context::isObjectHidden
bool isObjectHidden(uint ObjID) const
Query if an object is hidden.
Definition Context.cpp:7857
+
helios::Context::scaleObjectAboutPoint
void scaleObjectAboutPoint(uint ObjID, const helios::vec3 &scalefact, const helios::vec3 &point)
Method to scale a compound object in the x-, y- and z-directions.
Definition Context.cpp:2877
+
helios::Context::getTubeObjectSegmentVolume
float getTubeObjectSegmentVolume(uint ObjID, uint segment_index) const
get the volume of a segment within a Tube object
Definition Context.cpp:8120
+
helios::Context::getPrimitiveColor
helios::RGBcolor getPrimitiveColor(uint UUID) const
Method to return the diffuse color of a Primitive.
Definition Context.cpp:7071
+
helios::Context::copyObject
uint copyObject(uint ObjID)
Make a copy of a Compound Objects from the context.
Definition Context.cpp:2622
+
helios::Context::randn
float randn()
Draw a random number from a normal distribution with mean = 0, stddev = 1.
Definition Context.cpp:1194
+
helios::Context::getDiskObjectPointer
Disk * getDiskObjectPointer(uint ObjID) const
Get a pointer to a Disk Compound Object.
Definition Context.cpp:3984
+
helios::Context::overrideObjectTextureColor
void overrideObjectTextureColor(uint ObjID)
Override the color in the texture map for all primitives in the Compound Object, in which case the pr...
Definition Context.cpp:7922
+
helios::Context::getUniquePrimitiveParentObjectIDs
std::vector< uint > getUniquePrimitiveParentObjectIDs(const std::vector< uint > &UUIDs) const
Method to return unique parent object IDs for a vector of primitive UUIDs.
Definition Context.cpp:6966
+
helios::Context::translatePrimitive
void translatePrimitive(uint UUID, const vec3 &shift)
Translate a primitive using its UUID.
Definition Context.cpp:1396
+
helios::Context::getObjectBoundingBox
void getObjectBoundingBox(uint ObjID, vec3 &min_corner, vec3 &max_corner) const
Get the axis-aligned bounding box for a single object.
Definition Context.cpp:7942
+
helios::Context::getPrimitiveArea
float getPrimitiveArea(uint UUID) const
Method to return the surface area of a Primitive.
Definition Context.cpp:6997
+
helios::Context::getBoxObjectPointer
Box * getBoxObjectPointer(uint ObjID) const
Get a pointer to a Box Compound Object.
Definition Context.cpp:3916
+
helios::Context::cleanDeletedUUIDs
void cleanDeletedUUIDs(std::vector< uint > &UUIDs) const
Delete UUIDs from vector if primitives no longer exist (1D vector)
Definition Context.cpp:1783
+
helios::Context::getConeObjectSubdivisionCount
uint getConeObjectSubdivisionCount(uint ObjID) const
get the subdivision count of a Cone object from the context
Definition Context.cpp:8194
+
helios::Context::getDiskObjectCenter
helios::vec3 getDiskObjectCenter(uint ObjID) const
get the center of a Disk object from the context
Definition Context.cpp:8182
helios::Context::getPrimitiveData
void getPrimitiveData(uint UUID, const char *label, int &data) const
Get data associated with a primitive element.
Definition Context_data.cpp:1001
-
helios::Context::getJulianDate
int getJulianDate() const
Get simulation date by Julian day.
Definition Context.cpp:1135
-
helios::Context::deletePrimitive
void deletePrimitive(uint UUID)
Delete a single primitive from the context.
Definition Context.cpp:1531
-
helios::Context::getBoxObjectSubdivisionCount
helios::int3 getBoxObjectSubdivisionCount(uint ObjID) const
get the subdivision count of a Box object from the context
Definition Context.cpp:8107
-
helios::Context::getTubeObjectSubdivisionCount
uint getTubeObjectSubdivisionCount(uint ObjectID) const
get the subdivision count of a Tube object from the context
Definition Context.cpp:8033
+
helios::Context::getJulianDate
int getJulianDate() const
Get simulation date by Julian day.
Definition Context.cpp:1130
+
helios::Context::deletePrimitive
void deletePrimitive(uint UUID)
Delete a single primitive from the context.
Definition Context.cpp:1526
+
helios::Context::getBoxObjectSubdivisionCount
helios::int3 getBoxObjectSubdivisionCount(uint ObjID) const
get the subdivision count of a Box object from the context
Definition Context.cpp:8174
+
helios::Context::getTubeObjectSubdivisionCount
uint getTubeObjectSubdivisionCount(uint ObjectID) const
get the subdivision count of a Tube object from the context
Definition Context.cpp:8100
helios::Context::doesObjectDataExist
bool doesObjectDataExist(uint objID, const char *label) const
Check if primitive data 'label' exists.
Definition Context_data.cpp:2908
-
helios::Context::~Context
~Context()
Context destructor.
Definition Context.cpp:6847
-
helios::Context::getPrimitiveParentObjectID
uint getPrimitiveParentObjectID(uint UUID) const
Method to return the ID of the parent object the primitive belongs to (default is object 0)
Definition Context.cpp:6894
-
helios::Context::getAllObjectIDs
std::vector< uint > getAllObjectIDs() const
Get the IDs for all Compound Objects in the Context.
Definition Context.cpp:2574
-
helios::Context::getConeObjectPointer
Cone * getConeObjectPointer(uint ObjID) const
Get a pointer to a Cone Compound Object.
Definition Context.cpp:4033
+
helios::Context::~Context
~Context()
Context destructor.
Definition Context.cpp:6914
+
helios::Context::getPrimitiveParentObjectID
uint getPrimitiveParentObjectID(uint UUID) const
Method to return the ID of the parent object the primitive belongs to (default is object 0)
Definition Context.cpp:6961
+
helios::Context::getAllObjectIDs
std::vector< uint > getAllObjectIDs() const
Get the IDs for all Compound Objects in the Context.
Definition Context.cpp:2569
+
helios::Context::getConeObjectPointer
Cone * getConeObjectPointer(uint ObjID) const
Get a pointer to a Cone Compound Object.
Definition Context.cpp:4085
helios::Context::seedRandomGenerator
void seedRandomGenerator(uint seed)
Set seed for random generator.
Definition Context.cpp:43
helios::Context::getObjectData
void getObjectData(uint objID, const char *label, int &data) const
Get data associated with a compound object.
Definition Context_data.cpp:2740
-
helios::Context::printPrimitiveInfo
void printPrimitiveInfo(uint UUID) const
Prints primitive properties to console (useful for debugging purposes)
Definition Context.cpp:7102
-
helios::Context::markGeometryClean
void markGeometryClean()
Mark the Context geometry as "clean", meaning that the geometry has not been modified since last set ...
Definition Context.cpp:152
-
helios::Context::getDomainBoundingSphere
void getDomainBoundingSphere(helios::vec3 &center, float &radius) const
Get the center and radius of a sphere that bounds all primitives in the domain.
Definition Context.cpp:2101
-
helios::Context::rotateObject
void rotateObject(uint ObjID, float rotation_radians, const char *rotation_axis_xyz)
Rotate a single compound object about the x, y, or z axis.
Definition Context.cpp:2832
-
helios::Context::getObjectPointer
CompoundObject * getObjectPointer(uint ObjID) const
Get a pointer to a Compound Object.
Definition Context.cpp:2559
-
helios::Context::getPatchCenter
helios::vec3 getPatchCenter(uint UUID) const
Get the Cartesian (x,y,z) center position of a patch element.
Definition Context.cpp:1688
-
helios::Context::getTileObjectSize
helios::vec2 getTileObjectSize(uint ObjID) const
get the size of a tile object from the context
Definition Context.cpp:7997
-
helios::Context::getObjectPrimitiveCount
uint getObjectPrimitiveCount(uint ObjID) const
Method to return the number of primitives contained in the object.
Definition Context.cpp:7801
+
helios::Context::printPrimitiveInfo
void printPrimitiveInfo(uint UUID) const
Prints primitive properties to console (useful for debugging purposes)
Definition Context.cpp:7169
+
helios::Context::markGeometryClean
void markGeometryClean()
Mark the Context geometry as "clean", meaning that the geometry has not been modified since last set ...
Definition Context.cpp:147
+
helios::Context::getDomainBoundingSphere
void getDomainBoundingSphere(helios::vec3 &center, float &radius) const
Get the center and radius of a sphere that bounds all primitives in the domain.
Definition Context.cpp:2096
+
helios::Context::rotateObject
void rotateObject(uint ObjID, float rotation_radians, const char *rotation_axis_xyz)
Rotate a single compound object about the x, y, or z axis.
Definition Context.cpp:2827
+
helios::Context::getObjectPointer
CompoundObject * getObjectPointer(uint ObjID) const
Get a pointer to a Compound Object.
Definition Context.cpp:2554
+
helios::Context::getPatchCenter
helios::vec3 getPatchCenter(uint UUID) const
Get the Cartesian (x,y,z) center position of a patch element.
Definition Context.cpp:1683
+
helios::Context::getTileObjectSize
helios::vec2 getTileObjectSize(uint ObjID) const
get the size of a tile object from the context
Definition Context.cpp:8064
+
helios::Context::getObjectPrimitiveCount
uint getObjectPrimitiveCount(uint ObjID) const
Method to return the number of primitives contained in the object.
Definition Context.cpp:7868
helios::Context::getPrimitiveDataSize
uint getPrimitiveDataSize(uint UUID, const char *label) const
Get the size/length of primitive data.
Definition Context_data.cpp:1162
-
helios::Context::randu
float randu()
Draw a random number from a uniform distribution between 0 and 1.
Definition Context.cpp:1173
-
helios::Context::getPrimitiveColorRGBA
helios::RGBAcolor getPrimitiveColorRGBA(uint UUID) const
Method to return the diffuse color of a Primitive with transparency.
Definition Context.cpp:7012
-
helios::Context::getBoxObjectSize
helios::vec3 getBoxObjectSize(uint ObjID) const
get the size of a Box object from the context
Definition Context.cpp:8103
-
helios::Context::getSphereObjectCenter
helios::vec3 getSphereObjectCenter(uint ObjID) const
get the center of a Sphere object from the context
Definition Context.cpp:8017
-
helios::Context::getObjectCenter
helios::vec3 getObjectCenter(uint ObjID) const
Method to return the Cartesian (x,y,z) point of the center of a bounding box for the object.
Definition Context.cpp:7805
-
helios::Context::getPrimitiveTextureFile
std::string getPrimitiveTextureFile(uint UUID) const
Get the path to texture map file for primitive. If primitive does not have a texture map,...
Definition Context.cpp:7036
-
helios::Context::getObjectCount
uint getObjectCount() const
Get the total number of objects that have been created in the Context.
Definition Context.cpp:2566
-
helios::Context::getConeObjectNode
helios::vec3 getConeObjectNode(uint ObjID, int number) const
get a node of a Cone object from the context
Definition Context.cpp:8139
-
helios::Context::getTubeObjectVolume
float getTubeObjectVolume(uint ObjID) const
get the volume of a Tube object from the context
Definition Context.cpp:8049
-
helios::Context::getPrimitiveTextureUV
std::vector< vec2 > getPrimitiveTextureUV(uint UUID) const
Get u-v texture coordinates at primitive vertices.
Definition Context.cpp:7052
-
helios::Context::cropDomainZ
void cropDomainZ(const vec2 &zbounds)
Crop the domain in the z-direction such that all primitives lie within some specified z interval.
Definition Context.cpp:2175
-
helios::Context::getPolymeshObjectPointer
Polymesh * getPolymeshObjectPointer(uint ObjID) const
Get a pointer to a Polygon Mesh Compound Object.
Definition Context.cpp:3991
-
helios::Context::cropDomainX
void cropDomainX(const vec2 &xbounds)
Crop the domain in the x-direction such that all primitives lie within some specified x interval.
Definition Context.cpp:2129
-
helios::Context::getSphereObjectRadius
helios::vec3 getSphereObjectRadius(uint ObjID) const
get the radius of a Sphere object from the context
Definition Context.cpp:8021
-
helios::Context::setDate
void setDate(int day, int month, int year)
Set simulation date by day, month, year.
Definition Context.cpp:1062
-
helios::Context::setPrimitiveParentObjectID
void setPrimitiveParentObjectID(uint UUID, uint objID)
Method to set the ID of the parent object the primitive belongs to (default is object 0)
Definition Context.cpp:6865
-
helios::Context::primitiveTextureHasTransparencyChannel
bool primitiveTextureHasTransparencyChannel(uint UUID) const
Check if primitive texture map has a transparency channel.
Definition Context.cpp:7056
-
helios::Context::rotatePrimitive
void rotatePrimitive(uint UUID, float rot, const char *axis)
Rotate a primitive about the x, y, or z axis using its UUID.
Definition Context.cpp:1415
-
helios::Context::usePrimitiveTextureColor
void usePrimitiveTextureColor(uint UUID)
Use the texture map to color the primitive rather than the constant RGB color. This is function rever...
Definition Context.cpp:7084
-
helios::Context::doesObjectContainPrimitive
bool doesObjectContainPrimitive(uint ObjID, uint UUID)
Method to check if an Object contains a Primitive.
Definition Context.cpp:7851
-
helios::Context::getMonthString
const char * getMonthString() const
Get a string corresponding to the month of the simulation date.
Definition Context.cpp:1106
-
helios::Context::filterObjectsByData
std::vector< uint > filterObjectsByData(const std::vector< uint > &ObjIDs, const char *object_data, float threshold, const char *comparator) const
Get a vector of object IDs that meet filtering criteria based on object data.
Definition Context.cpp:2735
-
helios::Context::setObjectColor
void setObjectColor(uint ObjID, const helios::RGBcolor &color)
Method to set the diffuse color of an Object.
Definition Context.cpp:7831
-
helios::Context::setTriangleVertices
void setTriangleVertices(uint UUID, const helios::vec3 &vertex0, const helios::vec3 &vertex1, const helios::vec3 &vertex2)
//! Manually set the Triangle vertices
Definition Context.cpp:1717
-
helios::Context::appendTubeSegment
void appendTubeSegment(uint ObjID, const helios::vec3 &node_position, float radius, const RGBcolor &color)
Append a tube segment to an existing tube object.
Definition Context.cpp:8057
-
helios::Context::isGeometryDirty
bool isGeometryDirty() const
Query whether the Context geometry is "dirty", meaning has the geometry been modified since last set ...
Definition Context.cpp:160
-
helios::Context::getTileObjectNormal
helios::vec3 getTileObjectNormal(uint ObjID) const
get the normal of a tile object from the context
Definition Context.cpp:8005
+
helios::Context::randu
float randu()
Draw a random number from a uniform distribution between 0 and 1.
Definition Context.cpp:1168
+
helios::Context::getPrimitiveColorRGBA
helios::RGBAcolor getPrimitiveColorRGBA(uint UUID) const
Method to return the diffuse color of a Primitive with transparency.
Definition Context.cpp:7079
+
helios::Context::getBoxObjectSize
helios::vec3 getBoxObjectSize(uint ObjID) const
get the size of a Box object from the context
Definition Context.cpp:8170
+
helios::Context::getSphereObjectCenter
helios::vec3 getSphereObjectCenter(uint ObjID) const
get the center of a Sphere object from the context
Definition Context.cpp:8084
+
helios::Context::getObjectCenter
helios::vec3 getObjectCenter(uint ObjID) const
Method to return the Cartesian (x,y,z) point of the center of a bounding box for the object.
Definition Context.cpp:7872
+
helios::Context::getPrimitiveTextureFile
std::string getPrimitiveTextureFile(uint UUID) const
Get the path to texture map file for primitive. If primitive does not have a texture map,...
Definition Context.cpp:7103
+
helios::Context::getObjectCount
uint getObjectCount() const
Get the total number of objects that have been created in the Context.
Definition Context.cpp:2561
+
helios::Context::getConeObjectNode
helios::vec3 getConeObjectNode(uint ObjID, int number) const
get a node of a Cone object from the context
Definition Context.cpp:8206
+
helios::Context::getTubeObjectVolume
float getTubeObjectVolume(uint ObjID) const
get the volume of a Tube object from the context
Definition Context.cpp:8116
+
helios::Context::getPrimitiveTextureUV
std::vector< vec2 > getPrimitiveTextureUV(uint UUID) const
Get u-v texture coordinates at primitive vertices.
Definition Context.cpp:7119
+
helios::Context::cropDomainZ
void cropDomainZ(const vec2 &zbounds)
Crop the domain in the z-direction such that all primitives lie within some specified z interval.
Definition Context.cpp:2170
+
helios::Context::getPolymeshObjectPointer
Polymesh * getPolymeshObjectPointer(uint ObjID) const
Get a pointer to a Polygon Mesh Compound Object.
Definition Context.cpp:4043
+
helios::Context::cropDomainX
void cropDomainX(const vec2 &xbounds)
Crop the domain in the x-direction such that all primitives lie within some specified x interval.
Definition Context.cpp:2124
+
helios::Context::getSphereObjectRadius
helios::vec3 getSphereObjectRadius(uint ObjID) const
get the radius of a Sphere object from the context
Definition Context.cpp:8088
+
helios::Context::setDate
void setDate(int day, int month, int year)
Set simulation date by day, month, year.
Definition Context.cpp:1057
+
helios::Context::setPrimitiveParentObjectID
void setPrimitiveParentObjectID(uint UUID, uint objID)
Method to set the ID of the parent object the primitive belongs to (default is object 0)
Definition Context.cpp:6932
+
helios::Context::primitiveTextureHasTransparencyChannel
bool primitiveTextureHasTransparencyChannel(uint UUID) const
Check if primitive texture map has a transparency channel.
Definition Context.cpp:7123
+
helios::Context::rotatePrimitive
void rotatePrimitive(uint UUID, float rot, const char *axis)
Rotate a primitive about the x, y, or z axis using its UUID.
Definition Context.cpp:1410
+
helios::Context::usePrimitiveTextureColor
void usePrimitiveTextureColor(uint UUID)
Use the texture map to color the primitive rather than the constant RGB color. This is function rever...
Definition Context.cpp:7151
+
helios::Context::doesObjectContainPrimitive
bool doesObjectContainPrimitive(uint ObjID, uint UUID)
Method to check if an Object contains a Primitive.
Definition Context.cpp:7918
+
helios::Context::getMonthString
const char * getMonthString() const
Get a string corresponding to the month of the simulation date.
Definition Context.cpp:1101
+
helios::Context::filterObjectsByData
std::vector< uint > filterObjectsByData(const std::vector< uint > &ObjIDs, const char *object_data, float threshold, const char *comparator) const
Get a vector of object IDs that meet filtering criteria based on object data.
Definition Context.cpp:2730
+
helios::Context::setObjectColor
void setObjectColor(uint ObjID, const helios::RGBcolor &color)
Method to set the diffuse color of an Object.
Definition Context.cpp:7898
+
helios::Context::setTriangleVertices
void setTriangleVertices(uint UUID, const helios::vec3 &vertex0, const helios::vec3 &vertex1, const helios::vec3 &vertex2)
//! Manually set the Triangle vertices
Definition Context.cpp:1712
+
helios::Context::appendTubeSegment
void appendTubeSegment(uint ObjID, const helios::vec3 &node_position, float radius, const RGBcolor &color)
Append a tube segment to an existing tube object.
Definition Context.cpp:8124
+
helios::Context::isGeometryDirty
bool isGeometryDirty() const
Query whether the Context geometry is "dirty", meaning has the geometry been modified since last set ...
Definition Context.cpp:155
+
helios::Context::getTileObjectNormal
helios::vec3 getTileObjectNormal(uint ObjID) const
get the normal of a tile object from the context
Definition Context.cpp:8072
helios::Context::Context
Context()
Context default constructor.
Definition Context.cpp:20
-
helios::Context::getPrimitiveType
PrimitiveType getPrimitiveType(uint UUID) const
Method to get the Primitive type.
Definition Context.cpp:6861
-
helios::Context::getVoxelSize
helios::vec3 getVoxelSize(uint UUID) const
Get the size of a voxel element.
Definition Context.cpp:1736
-
helios::Context::getTubeObjectNodeRadii
std::vector< float > getTubeObjectNodeRadii(uint ObjID) const
get the node radii of a Tube object from the context
Definition Context.cpp:8041
-
helios::Context::getPrimitiveSolidFraction
float getPrimitiveSolidFraction(uint UUID) const
Get fraction of primitive surface area that is non-transparent.
Definition Context.cpp:7098
-
helios::Context::translateObject
void translateObject(uint ObjID, const vec3 &shift)
Translate a single compound object.
Definition Context.cpp:2822
-
helios::Context::scaleObjectAboutCenter
void scaleObjectAboutCenter(uint ObjID, const helios::vec3 &scalefact)
Method to scale a compound object in the x-, y- and z-directions.
Definition Context.cpp:2872
-
helios::Context::cropDomainY
void cropDomainY(const vec2 &ybounds)
Crop the domain in the y-direction such that all primitives lie within some specified y interval.
Definition Context.cpp:2152
-
helios::Context::getObjectType
helios::ObjectType getObjectType(uint ObjID) const
Get an enumeration specifying the type of the object.
Definition Context.cpp:2925
-
helios::Context::colorPrimitiveByDataPseudocolor
void colorPrimitiveByDataPseudocolor(const std::vector< uint > &UUIDs, const std::string &primitive_data, const std::string &colormap, uint Ncolors)
Overwrite primitive color based on a pseudocolor mapping of primitive data values.
Definition Context.cpp:6543
+
helios::Context::getPrimitiveType
PrimitiveType getPrimitiveType(uint UUID) const
Method to get the Primitive type.
Definition Context.cpp:6928
+
helios::Context::getVoxelSize
helios::vec3 getVoxelSize(uint UUID) const
Get the size of a voxel element.
Definition Context.cpp:1731
+
helios::Context::getTubeObjectNodeRadii
std::vector< float > getTubeObjectNodeRadii(uint ObjID) const
get the node radii of a Tube object from the context
Definition Context.cpp:8108
+
helios::Context::getPrimitiveSolidFraction
float getPrimitiveSolidFraction(uint UUID) const
Get fraction of primitive surface area that is non-transparent.
Definition Context.cpp:7165
+
helios::Context::translateObject
void translateObject(uint ObjID, const vec3 &shift)
Translate a single compound object.
Definition Context.cpp:2817
+
helios::Context::scaleObjectAboutCenter
void scaleObjectAboutCenter(uint ObjID, const helios::vec3 &scalefact)
Method to scale a compound object in the x-, y- and z-directions.
Definition Context.cpp:2867
+
helios::Context::cropDomainY
void cropDomainY(const vec2 &ybounds)
Crop the domain in the y-direction such that all primitives lie within some specified y interval.
Definition Context.cpp:2147
+
helios::Context::getObjectType
helios::ObjectType getObjectType(uint ObjID) const
Get an enumeration specifying the type of the object.
Definition Context.cpp:2920
+
helios::Context::colorPrimitiveByDataPseudocolor
void colorPrimitiveByDataPseudocolor(const std::vector< uint > &UUIDs, const std::string &primitive_data, const std::string &colormap, uint Ncolors)
Overwrite primitive color based on a pseudocolor mapping of primitive data values.
Definition Context.cpp:6610
helios::Context::doesPrimitiveDataExist
bool doesPrimitiveDataExist(uint UUID, const char *label) const
Check if primitive data 'label' exists.
Definition Context_data.cpp:1169
-
helios::Context::getTubeObjectNodeColors
std::vector< RGBcolor > getTubeObjectNodeColors(uint ObjID) const
get the node colors of a Tube object from the context
Definition Context.cpp:8045
+
helios::Context::getTubeObjectNodeColors
std::vector< RGBcolor > getTubeObjectNodeColors(uint ObjID) const
get the node colors of a Tube object from the context
Definition Context.cpp:8112
helios::Context::listPrimitiveData
std::vector< std::string > listPrimitiveData(uint UUID) const
Return labels for all primitive data for this particular primitive.
Definition Context_data.cpp:1268
-
helios::Context::getObjectPrimitiveUUIDs
std::vector< uint > getObjectPrimitiveUUIDs(uint ObjID) const
Get primitive UUIDs associated with compound object (single object ID input)
Definition Context.cpp:2892
-
helios::Context::copyPrimitive
uint copyPrimitive(uint UUID)
Make a copy of a primitive from the context.
Definition Context.cpp:1573
-
helios::Context::getPrimitiveTextureSize
helios::int2 getPrimitiveTextureSize(uint UUID) const
Get the size (number of pixels) of primitive texture map image.
Definition Context.cpp:7044
-
helios::Context::getTriangleVertex
helios::vec3 getTriangleVertex(uint UUID, uint number) const
Get a single vertex of a Triangle based on an index.
Definition Context.cpp:1706
-
helios::Context::getTime
helios::Time getTime() const
Get the simulation time.
Definition Context.cpp:1169
-
helios::Context::getPrimitiveColorRGB
helios::RGBcolor getPrimitiveColorRGB(uint UUID) const
Method to return the diffuse color of a Primitive.
Definition Context.cpp:7008
-
helios::Context::getDomainBoundingBox
void getDomainBoundingBox(helios::vec2 &xbounds, helios::vec2 &ybounds, helios::vec2 &zbounds) const
Get a box that bounds all primitives in the domain.
Definition Context.cpp:2031
-
helios::Context::getDiskObjectSubdivisionCount
uint getDiskObjectSubdivisionCount(uint ObjID) const
get the subdivision count of a Disk object from the context
Definition Context.cpp:8123
-
helios::Context::setPrimitiveTextureFile
void setPrimitiveTextureFile(uint UUID, const std::string &texturefile)
Set the texture map file for a primitive.
Definition Context.cpp:7040
-
helios::Context::getConeObjectNodes
std::vector< helios::vec3 > getConeObjectNodes(uint ObjID) const
get the nodes of a Cone object from the context
Definition Context.cpp:8131
-
helios::Context::hidePrimitive
void hidePrimitive(const std::vector< uint > &UUIDs)
Hide primitives in the Context such that their UUIDs are not returned in Context::getAllUUIDs()
Definition Context.cpp:1772
-
helios::Context::getSphereObjectPointer
Sphere * getSphereObjectPointer(uint ObjID) const
Get a pointer to a Sphere Compound Object.
Definition Context.cpp:3395
-
helios::Context::overridePrimitiveTextureColor
void overridePrimitiveTextureColor(uint UUID)
Override the color in the texture map for all primitives in the Compound Object, in which case the pr...
Definition Context.cpp:7074
-
helios::Context::getTileObjectSubdivisionCount
helios::int2 getTileObjectSubdivisionCount(uint ObjID) const
get the subdivision count of a tile object from the context
Definition Context.cpp:8001
-
helios::Context::isPrimitiveHidden
bool isPrimitiveHidden(uint UUID) const
Query whether a primitive is hidden.
Definition Context.cpp:1781
-
helios::Context::getDate
helios::Date getDate() const
Get simulation date.
Definition Context.cpp:1102
-
helios::Context::printObjectInfo
void printObjectInfo(uint ObjID) const
Prints object properties to console (useful for debugging purposes)
Definition Context.cpp:7376
+
helios::Context::getObjectPrimitiveUUIDs
std::vector< uint > getObjectPrimitiveUUIDs(uint ObjID) const
Get primitive UUIDs associated with compound object (single object ID input)
Definition Context.cpp:2887
+
helios::Context::copyPrimitive
uint copyPrimitive(uint UUID)
Make a copy of a primitive from the context.
Definition Context.cpp:1568
+
helios::Context::getPrimitiveTextureSize
helios::int2 getPrimitiveTextureSize(uint UUID) const
Get the size (number of pixels) of primitive texture map image.
Definition Context.cpp:7111
+
helios::Context::getTriangleVertex
helios::vec3 getTriangleVertex(uint UUID, uint number) const
Get a single vertex of a Triangle based on an index.
Definition Context.cpp:1701
+
helios::Context::getTime
helios::Time getTime() const
Get the simulation time.
Definition Context.cpp:1164
+
helios::Context::getPrimitiveColorRGB
helios::RGBcolor getPrimitiveColorRGB(uint UUID) const
Method to return the diffuse color of a Primitive.
Definition Context.cpp:7075
+
helios::Context::getDomainBoundingBox
void getDomainBoundingBox(helios::vec2 &xbounds, helios::vec2 &ybounds, helios::vec2 &zbounds) const
Get a box that bounds all primitives in the domain.
Definition Context.cpp:2026
+
helios::Context::getDiskObjectSubdivisionCount
uint getDiskObjectSubdivisionCount(uint ObjID) const
get the subdivision count of a Disk object from the context
Definition Context.cpp:8190
+
helios::Context::setPrimitiveTextureFile
void setPrimitiveTextureFile(uint UUID, const std::string &texturefile)
Set the texture map file for a primitive.
Definition Context.cpp:7107
+
helios::Context::getConeObjectNodes
std::vector< helios::vec3 > getConeObjectNodes(uint ObjID) const
get the nodes of a Cone object from the context
Definition Context.cpp:8198
+
helios::Context::hidePrimitive
void hidePrimitive(const std::vector< uint > &UUIDs)
Hide primitives in the Context such that their UUIDs are not returned in Context::getAllUUIDs()
Definition Context.cpp:1767
+
helios::Context::getSphereObjectPointer
Sphere * getSphereObjectPointer(uint ObjID) const
Get a pointer to a Sphere Compound Object.
Definition Context.cpp:3390
+
helios::Context::overridePrimitiveTextureColor
void overridePrimitiveTextureColor(uint UUID)
Override the color in the texture map for all primitives in the Compound Object, in which case the pr...
Definition Context.cpp:7141
+
helios::Context::getTileObjectSubdivisionCount
helios::int2 getTileObjectSubdivisionCount(uint ObjID) const
get the subdivision count of a tile object from the context
Definition Context.cpp:8068
+
helios::Context::isPrimitiveHidden
bool isPrimitiveHidden(uint UUID) const
Query whether a primitive is hidden.
Definition Context.cpp:1776
+
helios::Context::getDate
helios::Date getDate() const
Get simulation date.
Definition Context.cpp:1097
+
helios::Context::printObjectInfo
void printObjectInfo(uint ObjID) const
Prints object properties to console (useful for debugging purposes)
Definition Context.cpp:7443
helios::Context::getRandomGenerator
std::minstd_rand0 * getRandomGenerator()
Get the random number generator engine.
Definition Context.cpp:47
-
helios::Context::hideObject
void hideObject(const std::vector< uint > &ObjIDs)
Hide compound objects in the Context such that their object IDs are not returned in Context::getAllOb...
Definition Context.cpp:7778
-
helios::Context::getAllUUIDs
std::vector< uint > getAllUUIDs() const
Get all primitive UUIDs currently in the Context.
Definition Context.cpp:1758
-
helios::Context::getPrimitiveTextureTransparencyData
const std::vector< std::vector< bool > > * getPrimitiveTextureTransparencyData(uint UUID) const
Get the transparency channel pixel data from primitive texture map. If transparency channel does not ...
Definition Context.cpp:7064
-
helios::Context::getTileObjectAreaRatio
float getTileObjectAreaRatio(uint ObjectID) const
Get the area ratio of a tile object (total object area / sub-patch area)
Definition Context.cpp:2929
-
helios::Context::doesObjectExist
bool doesObjectExist(uint ObjID) const
Check whether Compound Object exists in the Context.
Definition Context.cpp:2570
+
helios::Context::hideObject
void hideObject(const std::vector< uint > &ObjIDs)
Hide compound objects in the Context such that their object IDs are not returned in Context::getAllOb...
Definition Context.cpp:7845
+
helios::Context::getAllUUIDs
std::vector< uint > getAllUUIDs() const
Get all primitive UUIDs currently in the Context.
Definition Context.cpp:1753
+
helios::Context::getPrimitiveTextureTransparencyData
const std::vector< std::vector< bool > > * getPrimitiveTextureTransparencyData(uint UUID) const
Get the transparency channel pixel data from primitive texture map. If transparency channel does not ...
Definition Context.cpp:7131
+
helios::Context::getTileObjectAreaRatio
float getTileObjectAreaRatio(uint ObjectID) const
Get the area ratio of a tile object (total object area / sub-patch area)
Definition Context.cpp:2924
+
helios::Context::doesObjectExist
bool doesObjectExist(uint ObjID) const
Check whether Compound Object exists in the Context.
Definition Context.cpp:2565
helios::Context::getPrimitiveDataType
HeliosDataType getPrimitiveDataType(uint UUID, const char *label) const
Get the Helios data type of primitive data.
Definition Context_data.cpp:1155
-
helios::Context::getTubeObjectNodes
std::vector< helios::vec3 > getTubeObjectNodes(uint ObjID) const
get the nodes of a Tube object from the context
Definition Context.cpp:8037
-
helios::Context::getTileObjectCenter
helios::vec3 getTileObjectCenter(uint ObjID) const
Get the Cartesian (x,y,z) center position of a tile object.
Definition Context.cpp:7993
-
helios::Context::scaleTubeGirth
void scaleTubeGirth(uint ObjID, float scale_factor)
Scale the girth for all nodes of a tube object.
Definition Context.cpp:8071
-
helios::Context::isPrimitiveTextureColorOverridden
bool isPrimitiveTextureColorOverridden(uint UUID) const
Check if color of texture map is overridden by the diffuse R-G-B color of the primitive.
Definition Context.cpp:7094
-
helios::Context::deleteObject
void deleteObject(uint ObjID)
Delete a single Compound Object from the context.
Definition Context.cpp:2594
-
helios::Context::getObjectArea
float getObjectArea(uint ObjID) const
Method to return the one-sided surface area of an object.
Definition Context.cpp:7797
-
helios::Context::getObjectTextureFile
std::string getObjectTextureFile(uint ObjID) const
Method to return the texture map file of an Object.
Definition Context.cpp:7809
-
helios::Context::getPolymeshObjectVolume
float getPolymeshObjectVolume(uint ObjID) const
Get the volume of a Polygon Mesh object from the context.
Definition Context.cpp:8159
-
helios::Context::scalePrimitive
void scalePrimitive(uint UUID, const helios::vec3 &S)
Scale a primitive using its UUID relative to the origin (0,0,0)
Definition Context.cpp:1486
-
helios::Context::getTubeObjectPointer
Tube * getTubeObjectPointer(uint ObjID) const
Get a pointer to a Tube Compound Object.
Definition Context.cpp:3471
-
helios::Context::getPatchSize
helios::vec2 getPatchSize(uint UUID) const
Get the size of a patch element.
Definition Context.cpp:1679
-
helios::Context::getTileObjectVertices
std::vector< helios::vec3 > getTileObjectVertices(uint ObjID) const
get the vertices of a tile object from the context
Definition Context.cpp:8013
-
helios::Context::markGeometryDirty
void markGeometryDirty()
Mark the Context geometry as "dirty", meaning that the geometry has been modified since last set as c...
Definition Context.cpp:156
-
helios::Context::getPrimitiveBoundingBox
void getPrimitiveBoundingBox(uint UUID, vec3 &min_corner, vec3 &max_corner) const
Get the axis-aligned bounding box for a single primitive.
Definition Context.cpp:6934
-
helios::Context::getPrimitiveNormal
helios::vec3 getPrimitiveNormal(uint UUID) const
Method to return the normal vector of a Primitive.
Definition Context.cpp:6981
+
helios::Context::getTubeObjectNodes
std::vector< helios::vec3 > getTubeObjectNodes(uint ObjID) const
get the nodes of a Tube object from the context
Definition Context.cpp:8104
+
helios::Context::getTileObjectCenter
helios::vec3 getTileObjectCenter(uint ObjID) const
Get the Cartesian (x,y,z) center position of a tile object.
Definition Context.cpp:8060
+
helios::Context::scaleTubeGirth
void scaleTubeGirth(uint ObjID, float scale_factor)
Scale the girth for all nodes of a tube object.
Definition Context.cpp:8138
+
helios::Context::isPrimitiveTextureColorOverridden
bool isPrimitiveTextureColorOverridden(uint UUID) const
Check if color of texture map is overridden by the diffuse R-G-B color of the primitive.
Definition Context.cpp:7161
+
helios::Context::deleteObject
void deleteObject(uint ObjID)
Delete a single Compound Object from the context.
Definition Context.cpp:2589
+
helios::Context::getObjectArea
float getObjectArea(uint ObjID) const
Method to return the one-sided surface area of an object.
Definition Context.cpp:7864
+
helios::Context::getObjectTextureFile
std::string getObjectTextureFile(uint ObjID) const
Method to return the texture map file of an Object.
Definition Context.cpp:7876
+
helios::Context::getPolymeshObjectVolume
float getPolymeshObjectVolume(uint ObjID) const
Get the volume of a Polygon Mesh object from the context.
Definition Context.cpp:8226
+
helios::Context::scalePrimitive
void scalePrimitive(uint UUID, const helios::vec3 &S)
Scale a primitive using its UUID relative to the origin (0,0,0)
Definition Context.cpp:1481
+
helios::Context::getTubeObjectPointer
Tube * getTubeObjectPointer(uint ObjID) const
Get a pointer to a Tube Compound Object.
Definition Context.cpp:3466
+
helios::Context::getPatchSize
helios::vec2 getPatchSize(uint UUID) const
Get the size of a patch element.
Definition Context.cpp:1674
+
helios::Context::getTileObjectVertices
std::vector< helios::vec3 > getTileObjectVertices(uint ObjID) const
get the vertices of a tile object from the context
Definition Context.cpp:8080
+
helios::Context::markGeometryDirty
void markGeometryDirty()
Mark the Context geometry as "dirty", meaning that the geometry has been modified since last set as c...
Definition Context.cpp:151
+
helios::Context::getPrimitiveBoundingBox
void getPrimitiveBoundingBox(uint UUID, vec3 &min_corner, vec3 &max_corner) const
Get the axis-aligned bounding box for a single primitive.
Definition Context.cpp:7001
+
helios::Context::getPrimitiveNormal
helios::vec3 getPrimitiveNormal(uint UUID) const
Method to return the normal vector of a Primitive.
Definition Context.cpp:7048
helios::Context::getObjectDataSize
uint getObjectDataSize(uint objID, const char *label) const
Get the size/length of primitive data.
Definition Context_data.cpp:2901
-
helios::Context::getConeObjectAxisUnitVector
helios::vec3 getConeObjectAxisUnitVector(uint ObjID) const
get the axis unit vector of a Cone object from the context
Definition Context.cpp:8147
-
helios::Context::getVoxelCenter
helios::vec3 getVoxelCenter(uint UUID) const
Get the Cartesian (x,y,z) center position of a voxel element.
Definition Context.cpp:1745
-
helios::Context::getDiskObjectSize
helios::vec2 getDiskObjectSize(uint ObjID) const
get the size of a Disk object from the context
Definition Context.cpp:8119
-
helios::Context::doesPrimitiveExist
bool doesPrimitiveExist(uint UUID) const
Check if primitive exists for a given UUID.
Definition Context.cpp:1654
-
helios::Context::areObjectPrimitivesComplete
bool areObjectPrimitivesComplete(uint objID) const
Method to query whether all object primitives are in tact.
Definition Context.cpp:2525
-
helios::Context::getConeObjectLength
float getConeObjectLength(uint ObjID) const
get the length of a Cone object from the context
Definition Context.cpp:8151
-
helios::Context::getTileObjectPointer
Tile * getTileObjectPointer(uint ObjID) const
Get a pointer to a Tile Compound Object.
Definition Context.cpp:3297
-
helios::Context::scalePrimitiveAboutPoint
void scalePrimitiveAboutPoint(uint UUID, const helios::vec3 &S, const helios::vec3 point)
Scale a primitive using its UUID about an arbitrary point in space.
Definition Context.cpp:1507
-
helios::Context::useObjectTextureColor
void useObjectTextureColor(uint ObjID)
For all primitives in the Compound Object, use the texture map to color the primitives rather than th...
Definition Context.cpp:7865
-
helios::Context::getSphereObjectSubdivisionCount
uint getSphereObjectSubdivisionCount(uint ObjID) const
get the subdivision count of a Sphere object from the context
Definition Context.cpp:8025
+
helios::Context::getConeObjectAxisUnitVector
helios::vec3 getConeObjectAxisUnitVector(uint ObjID) const
get the axis unit vector of a Cone object from the context
Definition Context.cpp:8214
+
helios::Context::getVoxelCenter
helios::vec3 getVoxelCenter(uint UUID) const
Get the Cartesian (x,y,z) center position of a voxel element.
Definition Context.cpp:1740
+
helios::Context::getDiskObjectSize
helios::vec2 getDiskObjectSize(uint ObjID) const
get the size of a Disk object from the context
Definition Context.cpp:8186
+
helios::Context::doesPrimitiveExist
bool doesPrimitiveExist(uint UUID) const
Check if primitive exists for a given UUID.
Definition Context.cpp:1649
+
helios::Context::areObjectPrimitivesComplete
bool areObjectPrimitivesComplete(uint objID) const
Method to query whether all object primitives are in tact.
Definition Context.cpp:2520
+
helios::Context::getConeObjectLength
float getConeObjectLength(uint ObjID) const
get the length of a Cone object from the context
Definition Context.cpp:8218
+
helios::Context::getTileObjectPointer
Tile * getTileObjectPointer(uint ObjID) const
Get a pointer to a Tile Compound Object.
Definition Context.cpp:3292
+
helios::Context::scalePrimitiveAboutPoint
void scalePrimitiveAboutPoint(uint UUID, const helios::vec3 &S, const helios::vec3 point)
Scale a primitive using its UUID about an arbitrary point in space.
Definition Context.cpp:1502
+
helios::Context::useObjectTextureColor
void useObjectTextureColor(uint ObjID)
For all primitives in the Compound Object, use the texture map to color the primitives rather than th...
Definition Context.cpp:7932
+
helios::Context::getSphereObjectSubdivisionCount
uint getSphereObjectSubdivisionCount(uint ObjID) const
get the subdivision count of a Sphere object from the context
Definition Context.cpp:8092
helios::Context::listObjectData
std::vector< std::string > listObjectData(uint ObjID) const
Return labels for all object data for this particular object.
Definition Context_data.cpp:3008
-
helios::Context::getConeObjectNodeRadii
std::vector< float > getConeObjectNodeRadii(uint ObjID) const
get the node radii of a Cone object from the context
Definition Context.cpp:8135
-
helios::Context::getBoxObjectVolume
float getBoxObjectVolume(uint ObjID) const
get the volume of a Box object from the context
Definition Context.cpp:8111
+
helios::Context::getConeObjectNodeRadii
std::vector< float > getConeObjectNodeRadii(uint ObjID) const
get the node radii of a Cone object from the context
Definition Context.cpp:8202
+
helios::Context::getBoxObjectVolume
float getBoxObjectVolume(uint ObjID) const
get the volume of a Box object from the context
Definition Context.cpp:8178
helios::Context::copyObjectData
void copyObjectData(uint source_objID, uint destination_objID)
copy all object data from one compound object to another
Definition Context_data.cpp:2915
-
helios::Context::setTime
void setTime(int minute, int hour)
Set simulation time.
Definition Context.cpp:1139
-
helios::Context::getPrimitiveVertices
std::vector< helios::vec3 > getPrimitiveVertices(uint UUID) const
Method to return the (x,y,z) coordinates of the vertices of a Primitive.
Definition Context.cpp:6999
-
helios::Context::getSphereObjectVolume
float getSphereObjectVolume(uint ObjID) const
get the volume of a Sphere object from the context
Definition Context.cpp:8029
-
helios::Context::setObjectTransformationMatrix
void setObjectTransformationMatrix(uint ObjID, float(&T)[16])
Method to set the Affine transformation matrix of an Object.
Definition Context.cpp:7817
-
helios::Context::cropDomain
void cropDomain(std::vector< uint > &UUIDs, const vec2 &xbounds, const vec2 &ybounds, const vec2 &zbounds)
Crop specified UUIDs such that they lie within some specified axis-aligned box.
Definition Context.cpp:2198
-
helios::Context::setTubeNodes
void setTubeNodes(uint ObjID, const std::vector< helios::vec3 > &node_xyz)
Set tube vertex coordinates at each segment node.
Definition Context.cpp:8092
-
helios::Context::getConeObjectNodeRadius
float getConeObjectNodeRadius(uint ObjID, int number) const
get a node radius of a Cone object from the context
Definition Context.cpp:8143
-
helios::Context::cleanDeletedObjectIDs
void cleanDeletedObjectIDs(std::vector< uint > &objIDs) const
Delete Object IDs from vector if objects no longer exist (1D vector)
Definition Context.cpp:2529
-
helios::Context::getConeObjectVolume
float getConeObjectVolume(uint ObjID) const
get the volume of a Cone object from the context
Definition Context.cpp:8155
-
helios::Context::getBoxObjectCenter
helios::vec3 getBoxObjectCenter(uint ObjID) const
get the center of a Box object from the context
Definition Context.cpp:8099
+
helios::Context::setTime
void setTime(int minute, int hour)
Set simulation time.
Definition Context.cpp:1134
+
helios::Context::getPrimitiveVertices
std::vector< helios::vec3 > getPrimitiveVertices(uint UUID) const
Method to return the (x,y,z) coordinates of the vertices of a Primitive.
Definition Context.cpp:7066
+
helios::Context::getSphereObjectVolume
float getSphereObjectVolume(uint ObjID) const
get the volume of a Sphere object from the context
Definition Context.cpp:8096
+
helios::Context::setObjectTransformationMatrix
void setObjectTransformationMatrix(uint ObjID, float(&T)[16])
Method to set the Affine transformation matrix of an Object.
Definition Context.cpp:7884
+
helios::Context::cropDomain
void cropDomain(std::vector< uint > &UUIDs, const vec2 &xbounds, const vec2 &ybounds, const vec2 &zbounds)
Crop specified UUIDs such that they lie within some specified axis-aligned box.
Definition Context.cpp:2193
+
helios::Context::setTubeNodes
void setTubeNodes(uint ObjID, const std::vector< helios::vec3 > &node_xyz)
Set tube vertex coordinates at each segment node.
Definition Context.cpp:8159
+
helios::Context::getConeObjectNodeRadius
float getConeObjectNodeRadius(uint ObjID, int number) const
get a node radius of a Cone object from the context
Definition Context.cpp:8210
+
helios::Context::cleanDeletedObjectIDs
void cleanDeletedObjectIDs(std::vector< uint > &objIDs) const
Delete Object IDs from vector if objects no longer exist (1D vector)
Definition Context.cpp:2524
+
helios::Context::getConeObjectVolume
float getConeObjectVolume(uint ObjID) const
get the volume of a Cone object from the context
Definition Context.cpp:8222
+
helios::Context::getBoxObjectCenter
helios::vec3 getBoxObjectCenter(uint ObjID) const
get the center of a Box object from the context
Definition Context.cpp:8166
helios::Context::getObjectDataType
HeliosDataType getObjectDataType(uint objID, const char *label) const
Get the Helios data type of primitive data.
Definition Context_data.cpp:2894
-
helios::Context::setPrimitiveTransformationMatrix
void setPrimitiveTransformationMatrix(uint UUID, float(&T)[16])
Method to set the Affine transformation matrix of a Primitive.
Definition Context.cpp:6989
-
helios::Context::getObjectTransformationMatrix
void getObjectTransformationMatrix(uint ObjID, float(&T)[16]) const
Method to return the Affine transformation matrix of an Object.
Definition Context.cpp:7813
-
helios::Context::setTubeRadii
void setTubeRadii(uint ObjID, const std::vector< float > &node_radii)
Set tube radii at each segment node.
Definition Context.cpp:8078
-
helios::Context::objectHasTexture
bool objectHasTexture(uint ObjID) const
Method to check whether an Object has texture data.
Definition Context.cpp:7827
-
helios::Context::scaleObject
void scaleObject(uint ObjID, const helios::vec3 &scalefact)
Method to scale a compound object in the x-, y- and z-directions.
Definition Context.cpp:2862
+
helios::Context::setPrimitiveTransformationMatrix
void setPrimitiveTransformationMatrix(uint UUID, float(&T)[16])
Method to set the Affine transformation matrix of a Primitive.
Definition Context.cpp:7056
+
helios::Context::getObjectTransformationMatrix
void getObjectTransformationMatrix(uint ObjID, float(&T)[16]) const
Method to return the Affine transformation matrix of an Object.
Definition Context.cpp:7880
+
helios::Context::setTubeRadii
void setTubeRadii(uint ObjID, const std::vector< float > &node_radii)
Set tube radii at each segment node.
Definition Context.cpp:8145
+
helios::Context::objectHasTexture
bool objectHasTexture(uint ObjID) const
Method to check whether an Object has texture data.
Definition Context.cpp:7894
+
helios::Context::scaleObject
void scaleObject(uint ObjID, const helios::vec3 &scalefact)
Method to scale a compound object in the x-, y- and z-directions.
Definition Context.cpp:2857
helios::Disk
Disk compound object class.
Definition Context.h:795
-
helios::Disk::getSize
vec2 getSize() const
Get the lateral dimensions of the disk object.
Definition Context.cpp:3939
-
helios::Disk::getSubdivisionCount
int2 getSubdivisionCount() const
Get the number of sub-triangle divisions of the disk object.
Definition Context.cpp:3971
-
helios::Disk::getCenter
vec3 getCenter() const
Get the Cartesian coordinates of the center of the disk object.
Definition Context.cpp:3955
-
helios::Disk::Disk
Disk(uint a_OID, const std::vector< uint > &a_UUIDs, int2 a_subdiv, const char *a_texturefile, helios::Context *a_context)
Default constructor.
Definition Context.cpp:3919
-
helios::Disk::setSubdivisionCount
void setSubdivisionCount(int2 subdiv)
Set the number of disk sub-triangle divisions.
Definition Context.cpp:3975
+
helios::Disk::getSize
vec2 getSize() const
Get the lateral dimensions of the disk object.
Definition Context.cpp:3991
+
helios::Disk::getSubdivisionCount
int2 getSubdivisionCount() const
Get the number of sub-triangle divisions of the disk object.
Definition Context.cpp:4023
+
helios::Disk::getCenter
vec3 getCenter() const
Get the Cartesian coordinates of the center of the disk object.
Definition Context.cpp:4007
+
helios::Disk::Disk
Disk(uint a_OID, const std::vector< uint > &a_UUIDs, int2 a_subdiv, const char *a_texturefile, helios::Context *a_context)
Default constructor.
Definition Context.cpp:3971
+
helios::Disk::setSubdivisionCount
void setSubdivisionCount(int2 subdiv)
Set the number of disk sub-triangle divisions.
Definition Context.cpp:4027
helios::Polymesh
Polymesh compound object class.
Definition Context.h:828
-
helios::Polymesh::Polymesh
Polymesh(uint a_OID, const std::vector< uint > &a_UUIDs, const char *a_texturefile, helios::Context *a_context)
Default constructor.
Definition Context.cpp:3979
-
helios::Polymesh::getVolume
float getVolume() const
Get the volume of the polymesh object.
Definition Context.cpp:3998
+
helios::Polymesh::Polymesh
Polymesh(uint a_OID, const std::vector< uint > &a_UUIDs, const char *a_texturefile, helios::Context *a_context)
Default constructor.
Definition Context.cpp:4031
+
helios::Polymesh::getVolume
float getVolume() const
Get the volume of the polymesh object.
Definition Context.cpp:4050
helios::Sphere
Sphere compound object class.
Definition Context.h:624
-
helios::Sphere::getSubdivisionCount
uint getSubdivisionCount() const
Get the number of sub-patch divisions of the sphere object.
Definition Context.cpp:3440
-
helios::Sphere::getRadius
helios::vec3 getRadius() const
Get the radius of the sphere.
Definition Context.cpp:3402
-
helios::Sphere::getVolume
float getVolume() const
Get the volume of the sphere object.
Definition Context.cpp:3448
-
helios::Sphere::getCenter
vec3 getCenter() const
Get the Cartesian coordinates of the center of the sphere object.
Definition Context.cpp:3424
-
helios::Sphere::Sphere
Sphere(uint a_OID, const std::vector< uint > &a_UUIDs, uint a_subdiv, const char *a_texturefile, helios::Context *a_context)
Default constructor.
Definition Context.cpp:3382
-
helios::Sphere::setSubdivisionCount
void setSubdivisionCount(uint subdiv)
Set the number of sphere tesselation divisions.
Definition Context.cpp:3444
+
helios::Sphere::getSubdivisionCount
uint getSubdivisionCount() const
Get the number of sub-patch divisions of the sphere object.
Definition Context.cpp:3435
+
helios::Sphere::getRadius
helios::vec3 getRadius() const
Get the radius of the sphere.
Definition Context.cpp:3397
+
helios::Sphere::getVolume
float getVolume() const
Get the volume of the sphere object.
Definition Context.cpp:3443
+
helios::Sphere::getCenter
vec3 getCenter() const
Get the Cartesian coordinates of the center of the sphere object.
Definition Context.cpp:3419
+
helios::Sphere::Sphere
Sphere(uint a_OID, const std::vector< uint > &a_UUIDs, uint a_subdiv, const char *a_texturefile, helios::Context *a_context)
Default constructor.
Definition Context.cpp:3377
+
helios::Sphere::setSubdivisionCount
void setSubdivisionCount(uint subdiv)
Set the number of sphere tesselation divisions.
Definition Context.cpp:3439
helios::Texture
Texture map data structure.
Definition Context.h:67
-
helios::Texture::getTextureFile
std::string getTextureFile() const
Get the name/path of the texture map file.
Definition Context.cpp:132
-
helios::Texture::hasTransparencyChannel
bool hasTransparencyChannel() const
Check whether the texture has a transparency channel.
Definition Context.cpp:140
-
helios::Texture::getImageResolution
helios::int2 getImageResolution() const
Get the size of the texture in pixels (horizontal x vertical)
Definition Context.cpp:136
-
helios::Texture::getSolidFraction
float getSolidFraction() const
Get the solid fraction of the texture transparency channel (if it exists)
Definition Context.cpp:148
-
helios::Texture::getTransparencyData
const std::vector< std::vector< bool > > * getTransparencyData() const
Get the data in the texture transparency channel (if it exists)
Definition Context.cpp:144
+
helios::Texture::getTextureFile
std::string getTextureFile() const
Get the name/path of the texture map file.
Definition Context.cpp:127
+
helios::Texture::hasTransparencyChannel
bool hasTransparencyChannel() const
Check whether the texture has a transparency channel.
Definition Context.cpp:135
+
helios::Texture::getImageResolution
helios::int2 getImageResolution() const
Get the size of the texture in pixels (horizontal x vertical)
Definition Context.cpp:131
+
helios::Texture::getSolidFraction
float getSolidFraction() const
Get the solid fraction of the texture transparency channel (if it exists)
Definition Context.cpp:143
+
helios::Texture::getTransparencyData
const std::vector< std::vector< bool > > * getTransparencyData() const
Get the data in the texture transparency channel (if it exists)
Definition Context.cpp:139
helios::Tile
Tile compound object class.
Definition Context.h:581
-
helios::Tile::getCenter
vec3 getCenter() const
Get the Cartesian coordinates of the center of the tile object.
Definition Context.cpp:3311
-
helios::Tile::getSubdivisionCount
helios::int2 getSubdivisionCount() const
Get the number of sub-patch divisions of the tile.
Definition Context.cpp:3328
-
helios::Tile::setSubdivisionCount
void setSubdivisionCount(const helios::int2 &subdiv)
Set the number of tile sub-patch divisions.
Definition Context.cpp:3332
-
helios::Tile::getTextureUV
std::vector< helios::vec2 > getTextureUV() const
Get the normalized (u,v) coordinates of the texture at each of the four corners of the tile object.
Definition Context.cpp:3376
-
helios::Tile::getSize
helios::vec2 getSize() const
Get the dimensions of the entire tile object.
Definition Context.cpp:3304
-
helios::Tile::getVertices
std::vector< helios::vec3 > getVertices() const
Get the Cartesian coordinates of each of the four corners of the tile object.
Definition Context.cpp:3337
-
helios::Tile::getNormal
vec3 getNormal() const
Get a unit vector normal to the tile object surface.
Definition Context.cpp:3370
-
helios::Tile::Tile
Tile(uint a_OID, const std::vector< uint > &a_UUIDs, const int2 &a_subdiv, const char *a_texturefile, helios::Context *a_context)
Default constructor.
Definition Context.cpp:3284
+
helios::Tile::getCenter
vec3 getCenter() const
Get the Cartesian coordinates of the center of the tile object.
Definition Context.cpp:3306
+
helios::Tile::getSubdivisionCount
helios::int2 getSubdivisionCount() const
Get the number of sub-patch divisions of the tile.
Definition Context.cpp:3323
+
helios::Tile::setSubdivisionCount
void setSubdivisionCount(const helios::int2 &subdiv)
Set the number of tile sub-patch divisions.
Definition Context.cpp:3327
+
helios::Tile::getTextureUV
std::vector< helios::vec2 > getTextureUV() const
Get the normalized (u,v) coordinates of the texture at each of the four corners of the tile object.
Definition Context.cpp:3371
+
helios::Tile::getSize
helios::vec2 getSize() const
Get the dimensions of the entire tile object.
Definition Context.cpp:3299
+
helios::Tile::getVertices
std::vector< helios::vec3 > getVertices() const
Get the Cartesian coordinates of each of the four corners of the tile object.
Definition Context.cpp:3332
+
helios::Tile::getNormal
vec3 getNormal() const
Get a unit vector normal to the tile object surface.
Definition Context.cpp:3365
+
helios::Tile::Tile
Tile(uint a_OID, const std::vector< uint > &a_UUIDs, const int2 &a_subdiv, const char *a_texturefile, helios::Context *a_context)
Default constructor.
Definition Context.cpp:3279
helios::Tube
Tube compound object class.
Definition Context.h:660
-
helios::Tube::Tube
Tube(uint a_OID, const std::vector< uint > &a_UUIDs, const std::vector< vec3 > &a_nodes, const std::vector< float > &a_radius, const std::vector< helios::RGBcolor > &a_colors, const std::vector< std::vector< helios::vec3 > > &a_triangle_vertices, uint a_subdiv, const char *a_texturefile, helios::Context *a_context)
Default constructor.
Definition Context.cpp:3453
-
helios::Tube::getSegmentVolume
float getSegmentVolume(uint segment_index) const
Get the volume of a segment within the tube object.
Definition Context.cpp:3546
-
helios::Tube::getNodeRadii
std::vector< float > getNodeRadii() const
Get the radius at each of the tube object nodes.
Definition Context.cpp:3493
-
helios::Tube::scaleTubeGirth
void scaleTubeGirth(float S)
Scale the girth of the tube object.
Definition Context.cpp:3736
-
helios::Tube::setTubeRadii
void setTubeRadii(const std::vector< float > &node_radii)
Set tube radii at each segment node.
Definition Context.cpp:3756
-
helios::Tube::getTriangleVertices
std::vector< std::vector< helios::vec3 > > getTriangleVertices() const
Get positions of triangle vertices comprising the tube object.
Definition Context.cpp:3514
-
helios::Tube::getVolume
float getVolume() const
Get the volume of the tube object.
Definition Context.cpp:3532
-
helios::Tube::appendTubeSegment
void appendTubeSegment(const helios::vec3 &node_position, float node_radius, const helios::RGBcolor &node_color)
Append an additional segment to the existing tube object.
Definition Context.cpp:3560
-
helios::Tube::getNodeColors
std::vector< helios::RGBcolor > getNodeColors() const
Get the colors at each of the tube object nodes.
Definition Context.cpp:3510
-
helios::Tube::getNodes
std::vector< helios::vec3 > getNodes() const
Get the Cartesian coordinates of each of the tube object nodes.
Definition Context.cpp:3478
-
helios::Tube::getSubdivisionCount
uint getSubdivisionCount() const
Get the number of sub-triangle divisions of the tube object.
Definition Context.cpp:3518
-
helios::Tube::scaleTubeLength
void scaleTubeLength(float S)
Scale the length of the tube object.
Definition Context.cpp:3779
-
helios::Tube::getLength
float getLength() const
Get the length of the tube object.
Definition Context.cpp:3522
-
helios::Tube::setTubeNodes
void setTubeNodes(const std::vector< helios::vec3 > &node_xyz)
Set tube vertex coordinates at each segment node.
Definition Context.cpp:3805
+
helios::Tube::Tube
Tube(uint a_OID, const std::vector< uint > &a_UUIDs, const std::vector< vec3 > &a_nodes, const std::vector< float > &a_radius, const std::vector< helios::RGBcolor > &a_colors, const std::vector< std::vector< helios::vec3 > > &a_triangle_vertices, uint a_subdiv, const char *a_texturefile, helios::Context *a_context)
Default constructor.
Definition Context.cpp:3448
+
helios::Tube::getSegmentVolume
float getSegmentVolume(uint segment_index) const
Get the volume of a segment within the tube object.
Definition Context.cpp:3541
+
helios::Tube::getNodeRadii
std::vector< float > getNodeRadii() const
Get the radius at each of the tube object nodes.
Definition Context.cpp:3488
+
helios::Tube::scaleTubeGirth
void scaleTubeGirth(float S)
Scale the girth of the tube object.
Definition Context.cpp:3788
+
helios::Tube::setTubeRadii
void setTubeRadii(const std::vector< float > &node_radii)
Set tube radii at each segment node.
Definition Context.cpp:3808
+
helios::Tube::getTriangleVertices
std::vector< std::vector< helios::vec3 > > getTriangleVertices() const
Get positions of triangle vertices comprising the tube object.
Definition Context.cpp:3509
+
helios::Tube::getVolume
float getVolume() const
Get the volume of the tube object.
Definition Context.cpp:3527
+
helios::Tube::appendTubeSegment
void appendTubeSegment(const helios::vec3 &node_position, float node_radius, const helios::RGBcolor &node_color)
Append an additional segment to the existing tube object.
Definition Context.cpp:3555
+
helios::Tube::getNodeColors
std::vector< helios::RGBcolor > getNodeColors() const
Get the colors at each of the tube object nodes.
Definition Context.cpp:3505
+
helios::Tube::getNodes
std::vector< helios::vec3 > getNodes() const
Get the Cartesian coordinates of each of the tube object nodes.
Definition Context.cpp:3473
+
helios::Tube::getSubdivisionCount
uint getSubdivisionCount() const
Get the number of sub-triangle divisions of the tube object.
Definition Context.cpp:3513
+
helios::Tube::scaleTubeLength
void scaleTubeLength(float S)
Scale the length of the tube object.
Definition Context.cpp:3831
+
helios::Tube::getLength
float getLength() const
Get the length of the tube object.
Definition Context.cpp:3517
+
helios::Tube::setTubeNodes
void setTubeNodes(const std::vector< helios::vec3 > &node_xyz)
Set tube vertex coordinates at each segment node.
Definition Context.cpp:3857
helios::PNGHasAlpha
bool PNGHasAlpha(const char *filename)
Check whether PNG image file has an alpha/transparency channel.
Definition global.cpp:1352
+
helios::rotatePointAboutLine
vec3 rotatePointAboutLine(const vec3 &point, const vec3 &line_base, const vec3 &line_direction, float theta)
Rotate a 3D vector about an arbitrary line.
Definition global.cpp:140
helios::matmult
void matmult(const float ML[16], const float MR[16], float(&T)[16])
Multiply 4x4 matrices: T=ML*MR.
Definition global.cpp:499
helios::CalendarDay
Date CalendarDay(int Julian_day, int year)
Convert Julian day to calendar day (day,month,year)
Definition global.cpp:1225
-
helios::getFileExtension
std::string getFileExtension(const std::string &filepath)
Parse a file string to get the extension.
Definition global.cpp:2991
+
helios::getFileExtension
std::string getFileExtension(const std::string &filepath)
Parse a file string to get the extension.
Definition global.cpp:2993
helios::helios_runtime_error
void helios_runtime_error(const std::string &error_message)
Function to throw a runtime error.
Definition global.cpp:29
helios::JulianDay
int JulianDay(int day, int month, int year)
Convert calendar day (day,month,year) to Julian day.
Definition global.cpp:1268
helios::nullorigin
vec3 nullorigin
Default null vec3 that gives the origin (0,0,0)
Definition global.cpp:58
-
helios::getImageResolutionJPEG
helios::int2 getImageResolutionJPEG(const std::string &filename)
Function to read a JPEG image file into pixel data array.
Definition global.cpp:1742
+
helios::getImageResolutionJPEG
helios::int2 getImageResolutionJPEG(const std::string &filename)
Function to read a JPEG image file into pixel data array.
Definition global.cpp:1744
helios::readPNG
void readPNG(const std::string &filename, uint &width, uint &height, std::vector< helios::RGBAcolor > &pixel_data)
Function to read a PNG image file into pixel data array.
Definition global.cpp:1505
-
helios::getFileStem
std::string getFileStem(const std::string &filepath)
Parse a file string to get the filename without extension.
Definition global.cpp:3017
+
helios::getFileStem
std::string getFileStem(const std::string &filepath)
Parse a file string to get the filename without extension.
Definition global.cpp:3019
helios::makeIdentityMatrix
void makeIdentityMatrix(float(&T)[16])
Construct an identity matrix.
Definition global.cpp:555
helios::nullrotation
SphericalCoord nullrotation
Default null SphericalCoord that applies no rotation.
Definition global.cpp:57
helios::readPNGAlpha
std::vector< std::vector< bool > > readPNGAlpha(const std::string &filename)
Function to read the alpha channel from a PNG image.
Definition global.cpp:1406
helios::vecmult
void vecmult(const float M[16], const float v[3], float(&result)[3])
Multiply 4x4 transformation matrix by 3-element vector: T=M*v.
Definition global.cpp:539
helios::writePNG
void writePNG(const std::string &filename, uint width, uint height, const std::vector< helios::RGBAcolor > &pixel_data)
Function to write a PNG image based on pixel data.
Definition global.cpp:1594
-
helios::Context::addDiskObject
uint addDiskObject(uint Ndivs, const helios::vec3 &center, const helios::vec2 &size)
Add new Disk geometric primitive to the Context given its center, and size.
Definition Context.cpp:5133
-
helios::Context::addTubeObject
uint addTubeObject(uint radial_subdivisions, const std::vector< vec3 > &nodes, const std::vector< float > &radius)
Add a 3D tube compound object to the Context.
Definition Context.cpp:4638
-
helios::Context::addConeObject
uint addConeObject(uint Ndivs, const vec3 &node0, const vec3 &node1, float radius0, float radius1)
Add a 3D cone compound object to the Context.
Definition Context.cpp:5303
-
helios::Context::addDisk
std::vector< uint > addDisk(uint Ndivs, const helios::vec3 &center, const helios::vec2 &size)
Add new Disk geometric primitive to the Context given its center, and size.
Definition Context.cpp:6233
-
helios::Context::addBox
std::vector< uint > addBox(const vec3 &center, const vec3 &size, const int3 &subdiv)
Add a rectangular prism tessellated with Patch primitives.
Definition Context.cpp:6024
-
helios::Context::addBoxObject
uint addBoxObject(const vec3 &center, const vec3 &size, const int3 &subdiv)
Add a rectangular prism tessellated with Patch primitives.
Definition Context.cpp:4877
-
helios::Context::addPolymeshObject
uint addPolymeshObject(const std::vector< uint > &UUIDs)
Add new Polymesh Compound Object.
Definition Context.cpp:5276
-
helios::Context::addSphere
std::vector< uint > addSphere(uint Ndivs, const vec3 &center, float radius)
Add a spherical compound object to the Context.
Definition Context.cpp:5523
-
helios::Context::addTube
std::vector< uint > addTube(uint Ndivs, const std::vector< vec3 > &nodes, const std::vector< float > &radius)
Add a 3D tube compound object to the Context.
Definition Context.cpp:5807
-
helios::Context::addTile
std::vector< uint > addTile(const vec3 &center, const vec2 &size, const SphericalCoord &rotation, const int2 &subdiv)
Add a patch that is subdivided into a regular grid of sub-patches (tiled)
Definition Context.cpp:5686
-
helios::Context::addTileObject
uint addTileObject(const vec3 &center, const vec2 &size, const SphericalCoord &rotation, const int2 &subdiv)
Add a patch that is subdivided into a regular grid of sub-patches (tiled)
Definition Context.cpp:4460
-
helios::Context::addCone
std::vector< uint > addCone(uint Ndivs, const vec3 &node0, const vec3 &node1, float radius0, float radius1)
Add a 3D cone to the Context.
Definition Context.cpp:6336
-
helios::Context::addSphereObject
uint addSphereObject(uint Ndivs, const vec3 &center, float radius)
Add a spherical compound object to the Context.
Definition Context.cpp:4220
+
helios::Context::addDiskObject
uint addDiskObject(uint Ndivs, const helios::vec3 &center, const helios::vec2 &size)
Add new Disk geometric primitive to the Context given its center, and size.
Definition Context.cpp:5200
+
helios::Context::addTubeObject
uint addTubeObject(uint radial_subdivisions, const std::vector< vec3 > &nodes, const std::vector< float > &radius)
Add a 3D tube compound object to the Context.
Definition Context.cpp:4690
+
helios::Context::addConeObject
uint addConeObject(uint Ndivs, const vec3 &node0, const vec3 &node1, float radius0, float radius1)
Add a 3D cone compound object to the Context.
Definition Context.cpp:5370
+
helios::Context::addDisk
std::vector< uint > addDisk(uint Ndivs, const helios::vec3 &center, const helios::vec2 &size)
Add new Disk geometric primitive to the Context given its center, and size.
Definition Context.cpp:6300
+
helios::Context::addBox
std::vector< uint > addBox(const vec3 &center, const vec3 &size, const int3 &subdiv)
Add a rectangular prism tessellated with Patch primitives.
Definition Context.cpp:6091
+
helios::Context::addBoxObject
uint addBoxObject(const vec3 &center, const vec3 &size, const int3 &subdiv)
Add a rectangular prism tessellated with Patch primitives.
Definition Context.cpp:4944
+
helios::Context::addPolymeshObject
uint addPolymeshObject(const std::vector< uint > &UUIDs)
Add new Polymesh Compound Object.
Definition Context.cpp:5343
+
helios::Context::addSphere
std::vector< uint > addSphere(uint Ndivs, const vec3 &center, float radius)
Add a spherical compound object to the Context.
Definition Context.cpp:5590
+
helios::Context::addTube
std::vector< uint > addTube(uint Ndivs, const std::vector< vec3 > &nodes, const std::vector< float > &radius)
Add a 3D tube compound object to the Context.
Definition Context.cpp:5874
+
helios::Context::addTile
std::vector< uint > addTile(const vec3 &center, const vec2 &size, const SphericalCoord &rotation, const int2 &subdiv)
Add a patch that is subdivided into a regular grid of sub-patches (tiled)
Definition Context.cpp:5753
+
helios::Context::addTileObject
uint addTileObject(const vec3 &center, const vec2 &size, const SphericalCoord &rotation, const int2 &subdiv)
Add a patch that is subdivided into a regular grid of sub-patches (tiled)
Definition Context.cpp:4512
+
helios::Context::addCone
std::vector< uint > addCone(uint Ndivs, const vec3 &node0, const vec3 &node1, float radius0, float radius1)
Add a 3D cone to the Context.
Definition Context.cpp:6403
+
helios::Context::addSphereObject
uint addSphereObject(uint Ndivs, const vec3 &center, float radius)
Add a spherical compound object to the Context.
Definition Context.cpp:4272
helios::cart2sphere
SphericalCoord cart2sphere(const vec3 &Cartesian)
Convert Cartesian coordinates to spherical coordinates.
Definition global.cpp:610
helios::makeRotationMatrix
void makeRotationMatrix(float rotation, const char *axis, float(&transform)[16])
Construct a rotation matrix to perform rotation about the x-, y-, or z-axis.
Definition global.cpp:313
helios::makeTranslationMatrix
void makeTranslationMatrix(const helios::vec3 &translation, float(&transform)[16])
Construct translation matrix.
Definition global.cpp:436
@@ -9286,47 +9354,47 @@
helios::makeScaleMatrix
void makeScaleMatrix(const helios::vec3 &scale, float(&T)[16])
Construct matrix to scale about the origin.
Definition global.cpp:457
helios::acos_safe
float acos_safe(float x)
arccosine function to handle cases when round-off errors cause an argument <-1 or >1,...
Definition global.cpp:241
helios::mean
float mean(const std::vector< float > &vect)
Mean value of a vector of floats.
Definition global.cpp:1002
-
helios::Context::addTriangle
uint addTriangle(const helios::vec3 &vertex0, const helios::vec3 &vertex1, const helios::vec3 &vertex2)
Add new Triangle geometric primitive.
Definition Context.cpp:1323
-
helios::Context::getPrimitiveCount
uint getPrimitiveCount() const
Get the total number of Primitives in the Context.
Definition Context.cpp:1754
-
helios::Context::addVoxel
uint addVoxel(const helios::vec3 &center, const helios::vec3 &size)
Add new Voxel geometric primitive.
Definition Context.cpp:1367
-
helios::Context::addPatch
uint addPatch()
Add new default Patch geometric primitive, which is centered at the origin (0,0,0),...
Definition Context.cpp:1207
-
helios::Context::setCurrentTimeseriesPoint
void setCurrentTimeseriesPoint(const char *label, uint index)
Set the Context date and time by providing the index of a timeseries data point.
Definition Context.cpp:1881
-
helios::Context::queryTimeseriesTime
Time queryTimeseriesTime(const char *label, uint index) const
Get the time associated with a timeseries data point.
Definition Context.cpp:1953
-
helios::Context::getTimeseriesLength
uint getTimeseriesLength(const char *label) const
Get the length of timeseries data.
Definition Context.cpp:2009
-
helios::Context::queryTimeseriesData
float queryTimeseriesData(const char *label, const Date &date, const Time &time) const
Get a timeseries data point by specifying a date and time vector.
Definition Context.cpp:1889
-
helios::Context::doesTimeseriesVariableExist
bool doesTimeseriesVariableExist(const char *label) const
Query whether a timeseries variable exists.
Definition Context.cpp:2021
-
helios::Context::addTimeseriesData
void addTimeseriesData(const char *label, float value, const Date &date, const Time &time)
Add a data point to timeseries of data.
Definition Context.cpp:1818
-
helios::Context::queryTimeseriesDate
Date queryTimeseriesDate(const char *label, uint index) const
Get the date associated with a timeseries data point.
Definition Context.cpp:1989
+
helios::Context::addTriangle
uint addTriangle(const helios::vec3 &vertex0, const helios::vec3 &vertex1, const helios::vec3 &vertex2)
Add new Triangle geometric primitive.
Definition Context.cpp:1318
+
helios::Context::getPrimitiveCount
uint getPrimitiveCount() const
Get the total number of Primitives in the Context.
Definition Context.cpp:1749
+
helios::Context::addVoxel
uint addVoxel(const helios::vec3 &center, const helios::vec3 &size)
Add new Voxel geometric primitive.
Definition Context.cpp:1362
+
helios::Context::addPatch
uint addPatch()
Add new default Patch geometric primitive, which is centered at the origin (0,0,0),...
Definition Context.cpp:1202
+
helios::Context::setCurrentTimeseriesPoint
void setCurrentTimeseriesPoint(const char *label, uint index)
Set the Context date and time by providing the index of a timeseries data point.
Definition Context.cpp:1876
+
helios::Context::queryTimeseriesTime
Time queryTimeseriesTime(const char *label, uint index) const
Get the time associated with a timeseries data point.
Definition Context.cpp:1948
+
helios::Context::getTimeseriesLength
uint getTimeseriesLength(const char *label) const
Get the length of timeseries data.
Definition Context.cpp:2004
+
helios::Context::queryTimeseriesData
float queryTimeseriesData(const char *label, const Date &date, const Time &time) const
Get a timeseries data point by specifying a date and time vector.
Definition Context.cpp:1884
+
helios::Context::doesTimeseriesVariableExist
bool doesTimeseriesVariableExist(const char *label) const
Query whether a timeseries variable exists.
Definition Context.cpp:2016
+
helios::Context::addTimeseriesData
void addTimeseriesData(const char *label, float value, const Date &date, const Time &time)
Add a data point to timeseries of data.
Definition Context.cpp:1813
+
helios::Context::queryTimeseriesDate
Date queryTimeseriesDate(const char *label, uint index) const
Get the date associated with a timeseries data point.
Definition Context.cpp:1984
helios::make_int2
int2 make_int2(int x, int y)
Make an int2 vector from two ints.
Definition helios_vector_types.h:99
-
helios::make_Time
Time make_Time(int hour, int minute)
Make a Time vector.
Definition helios_vector_types.h:1424
-
helios::make_vec2
vec2 make_vec2(float x, float y)
Make a vec2 from two floats.
Definition helios_vector_types.h:432
-
helios::make_RGBAcolor
RGBAcolor make_RGBAcolor(float r, float g, float b, float a)
Make an RGBAcolor vector.
Definition helios_vector_types.h:1130
-
helios::make_Date
Date make_Date(int day, int month, int year)
Make a Date vector.
Definition helios_vector_types.h:1238
-
helios::Julian2Calendar
Date Julian2Calendar(int JulianDay, int year)
Convert a Julian day to a calendar Date vector.
Definition helios_vector_types.h:1265
-
helios::make_RGBcolor
RGBcolor make_RGBcolor(float r, float g, float b)
Make an RGBcolor vector.
Definition helios_vector_types.h:951
-
helios::make_vec3
vec3 make_vec3(float x, float y, float z)
Make a vec3 from three floats.
Definition helios_vector_types.h:587
-
helios::cross
vec3 cross(const vec3 &a, const vec3 &b)
Cross product of two vec3 vectors.
Definition helios_vector_types.h:597
-
helios::make_SphericalCoord
SphericalCoord make_SphericalCoord(float elevation_radians, float azimuth_radians)
Make a SphericalCoord by specifying elevation and azimuth.
Definition helios_vector_types.h:1536
- -
helios::Date::month
int month
Month of year.
Definition helios_vector_types.h:1171
-
helios::Date::day
int day
Day of month.
Definition helios_vector_types.h:1169
+
helios::make_Time
Time make_Time(int hour, int minute)
Make a Time vector.
Definition helios_vector_types.h:1427
+
helios::make_vec2
vec2 make_vec2(float x, float y)
Make a vec2 from two floats.
Definition helios_vector_types.h:433
+
helios::make_RGBAcolor
RGBAcolor make_RGBAcolor(float r, float g, float b, float a)
Make an RGBAcolor vector.
Definition helios_vector_types.h:1133
+
helios::make_Date
Date make_Date(int day, int month, int year)
Make a Date vector.
Definition helios_vector_types.h:1241
+
helios::Julian2Calendar
Date Julian2Calendar(int JulianDay, int year)
Convert a Julian day to a calendar Date vector.
Definition helios_vector_types.h:1268
+
helios::make_RGBcolor
RGBcolor make_RGBcolor(float r, float g, float b)
Make an RGBcolor vector.
Definition helios_vector_types.h:954
+
helios::make_vec3
vec3 make_vec3(float x, float y, float z)
Make a vec3 from three floats.
Definition helios_vector_types.h:589
+
helios::cross
vec3 cross(const vec3 &a, const vec3 &b)
Cross product of two vec3 vectors.
Definition helios_vector_types.h:599
+
helios::make_SphericalCoord
SphericalCoord make_SphericalCoord(float elevation_radians, float azimuth_radians)
Make a SphericalCoord by specifying elevation and azimuth.
Definition helios_vector_types.h:1539
+ +
helios::Date::month
int month
Month of year.
Definition helios_vector_types.h:1174
+
helios::Date::day
int day
Day of month.
Definition helios_vector_types.h:1172
helios::Date::JulianDay
int JulianDay() const
Convert to Julian day.
Definition global.cpp:186
-
helios::Date::year
int year
Year in YYYY format.
Definition helios_vector_types.h:1173
-
helios::RGBAcolor
R-G-B-A color vector.
Definition helios_vector_types.h:1021
-
helios::RGBAcolor::r
float r
Red color component.
Definition helios_vector_types.h:1026
-
helios::RGBAcolor::b
float b
Blue color component.
Definition helios_vector_types.h:1032
-
helios::RGBAcolor::g
float g
Green color component.
Definition helios_vector_types.h:1029
-
helios::RGBcolor
R-G-B color vector.
Definition helios_vector_types.h:841
-
helios::RGBcolor::b
float b
Blue color component.
Definition helios_vector_types.h:852
-
helios::RGBcolor::r
float r
Red color component.
Definition helios_vector_types.h:846
-
helios::RGBcolor::g
float g
Green color component.
Definition helios_vector_types.h:849
-
helios::SphericalCoord
Vector of spherical coordinates (elevation,azimuth)
Definition helios_vector_types.h:1468
-
helios::SphericalCoord::elevation
const float & elevation
Elevation angle (radians)
Definition helios_vector_types.h:1482
-
helios::SphericalCoord::azimuth
float azimuth
Azimuthal angle (radians)
Definition helios_vector_types.h:1489
- -
helios::Time::second
int second
Second of minute.
Definition helios_vector_types.h:1352
-
helios::Time::hour
int hour
Hour of day.
Definition helios_vector_types.h:1356
-
helios::Time::minute
int minute
Minute of hour.
Definition helios_vector_types.h:1354
+
helios::Date::year
int year
Year in YYYY format.
Definition helios_vector_types.h:1176
+
helios::RGBAcolor
R-G-B-A color vector.
Definition helios_vector_types.h:1024
+
helios::RGBAcolor::r
float r
Red color component.
Definition helios_vector_types.h:1029
+
helios::RGBAcolor::b
float b
Blue color component.
Definition helios_vector_types.h:1035
+
helios::RGBAcolor::g
float g
Green color component.
Definition helios_vector_types.h:1032
+
helios::RGBcolor
R-G-B color vector.
Definition helios_vector_types.h:844
+
helios::RGBcolor::b
float b
Blue color component.
Definition helios_vector_types.h:855
+
helios::RGBcolor::r
float r
Red color component.
Definition helios_vector_types.h:849
+
helios::RGBcolor::g
float g
Green color component.
Definition helios_vector_types.h:852
+
helios::SphericalCoord
Vector of spherical coordinates (elevation,azimuth)
Definition helios_vector_types.h:1471
+
helios::SphericalCoord::elevation
const float & elevation
Elevation angle (radians)
Definition helios_vector_types.h:1485
+
helios::SphericalCoord::azimuth
float azimuth
Azimuthal angle (radians)
Definition helios_vector_types.h:1492
+ +
helios::Time::second
int second
Second of minute.
Definition helios_vector_types.h:1355
+
helios::Time::hour
int hour
Hour of day.
Definition helios_vector_types.h:1359
+
helios::Time::minute
int minute
Minute of hour.
Definition helios_vector_types.h:1357
helios::int2
Vector of two elements of type 'int'.
Definition helios_vector_types.h:44
helios::int2::y
int y
Second element in vector.
Definition helios_vector_types.h:50
helios::int2::x
int x
First element in vector.
Definition helios_vector_types.h:48
@@ -9337,12 +9405,12 @@
helios::vec2
Vector of two elements of type 'float'.
Definition helios_vector_types.h:346
helios::vec2::x
float x
First element in vector.
Definition helios_vector_types.h:350
helios::vec2::y
float y
Second element in vector.
Definition helios_vector_types.h:352
-
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:502
-
helios::vec3::x
float x
First element in vector.
Definition helios_vector_types.h:506
-
helios::vec3::z
float z
Third element in vector.
Definition helios_vector_types.h:510
-
helios::vec3::normalize
void normalize()
Normalize vector components such that the magnitude is unity.
Definition helios_vector_types.h:513
-
helios::vec3::y
float y
Second element in vector.
Definition helios_vector_types.h:508
-
helios::vec3::magnitude
float magnitude() const
Compute the vector magnitude.
Definition helios_vector_types.h:524
+
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:503
+
helios::vec3::normalize
vec3 normalize()
Normalize vector components such that the magnitude is unity.
Definition helios_vector_types.h:514
+
helios::vec3::x
float x
First element in vector.
Definition helios_vector_types.h:507
+
helios::vec3::z
float z
Third element in vector.
Definition helios_vector_types.h:511
+
helios::vec3::y
float y
Second element in vector.
Definition helios_vector_types.h:509
+
helios::vec3::magnitude
float magnitude() const
Compute the vector magnitude.
Definition helios_vector_types.h:526
diff --git a/doc/html/_context_8h.html b/doc/html/_context_8h.html index 84b0d45ba..4757716db 100644 --- a/doc/html/_context_8h.html +++ b/doc/html/_context_8h.html @@ -38,7 +38,7 @@
diff --git a/doc/html/_context_8h_source.html b/doc/html/_context_8h_source.html index a359775dd..98cf21388 100644 --- a/doc/html/_context_8h_source.html +++ b/doc/html/_context_8h_source.html @@ -38,7 +38,7 @@ @@ -2152,725 +2152,728 @@
4343
4345
4349 size_t getGlobalDataSize( const char* label ) const;
-
4350
+
4350
4352
-
4356 bool doesGlobalDataExist( const char* label ) const;
-
4357
-
4359
-
4364 void incrementGlobalData( const char* label, int increment );
+
4355 std::vector<std::string> listGlobalData() const;
+
4356
+
4358
+
4362 bool doesGlobalDataExist( const char* label ) const;
+
4363
4365
-
4367
-
4372 void incrementGlobalData( const char* label, uint increment );
+
4370 void incrementGlobalData( const char* label, int increment );
+
4371
4373
-
4375
-
4380 void incrementGlobalData( const char* label, float increment );
+
4378 void incrementGlobalData( const char* label, uint increment );
+
4379
4381
-
4383
-
4388 void incrementGlobalData( const char* label, double increment );
-
4389
-
4390 //--------- Compound Objects Methods -------------//
-
4391
-
4393
-
4396 CompoundObject* getObjectPointer( uint ObjID ) const;
+
4386 void incrementGlobalData( const char* label, float increment );
+
4387
+
4389
+
4394 void incrementGlobalData( const char* label, double increment );
+
4395
+
4396 //--------- Compound Objects Methods -------------//
4397
4399
-
4402 uint getObjectCount() const;
+
4402 CompoundObject* getObjectPointer( uint ObjID ) const;
4403
4405
-
4408 bool doesObjectExist( uint ObjID ) const;
+
4408 uint getObjectCount() const;
4409
4411
-
4414 std::vector<uint> getAllObjectIDs() const;
+
4414 bool doesObjectExist( uint ObjID ) const;
4415
4417
-
4420 void deleteObject(uint ObjID );
+
4420 std::vector<uint> getAllObjectIDs() const;
4421
4423
-
4426 void deleteObject(const std::vector<uint> &ObjIDs );
+
4426 void deleteObject(uint ObjID );
4427
4429
-
4433 uint copyObject(uint ObjID );
-
4434
-
4436
-
4440 std::vector<uint> copyObject(const std::vector<uint> &ObjIDs );
-
4441
-
4443
-
4447 void copyObjectData(uint source_objID, uint destination_objID);
-
4448
-
4450
-
4454 void duplicateObjectData( uint objID, const char* old_label, const char* new_label );
-
4455
-
4457
-
4461 void renameObjectData( uint objID, const char* old_label, const char* new_label );
-
4462
-
4464
-
4470 std::vector<uint> filterObjectsByData( const std::vector<uint> &ObjIDs, const char* object_data, float threshold, const char* comparator) const;
-
4471
-
4473
-
4477 void translateObject(uint ObjID, const vec3& shift );
-
4478
-
4480
-
4484 void translateObject(const std::vector<uint>& ObjIDs, const vec3& shift );
-
4485
-
4487
-
4492 void rotateObject(uint ObjID, float rotation_radians, const char* rotation_axis_xyz );
-
4493
-
4495
-
4500 void rotateObject(const std::vector<uint>& ObjIDs, float rotation_radians, const char* rotation_axis_xyz );
-
4501
-
4503
-
4508 void rotateObject(uint ObjID, float rotation_radians, const vec3& rotation_axis_vector );
-
4509
-
4511
-
4516 void rotateObject(const std::vector<uint>& ObjIDs, float rotation_radians, const vec3& rotation_axis_vector );
-
4517
-
4519
-
4525 void rotateObject(uint ObjID, float rotation_radians, const vec3& rotation_origin, const vec3& rotation_axis_vector );
-
4526
-
4528
-
4534 void rotateObject(const std::vector<uint>& ObjIDs, float rotation_radians, const vec3& rotation_origin, const vec3& rotation_axis_vector );
-
4535
-
4537
-
4541 void scaleObject( uint ObjID, const helios::vec3 &scalefact );
-
4542
-
4544
-
4548 void scaleObject( const std::vector<uint>& ObjIDs, const helios::vec3 &scalefact );
-
4549
-
4551
-
4555 void scaleObjectAboutCenter( uint ObjID, const helios::vec3 &scalefact );
-
4556
-
4558
-
4562 void scaleObjectAboutCenter( const std::vector<uint>& ObjIDs, const helios::vec3 &scalefact );
-
4563
-
4565
-
4570 void scaleObjectAboutPoint( uint ObjID, const helios::vec3 &scalefact, const helios::vec3 &point );
+
4432 void deleteObject(const std::vector<uint> &ObjIDs );
+
4433
+
4435
+
4439 uint copyObject(uint ObjID );
+
4440
+
4442
+
4446 std::vector<uint> copyObject(const std::vector<uint> &ObjIDs );
+
4447
+
4449
+
4453 void copyObjectData(uint source_objID, uint destination_objID);
+
4454
+
4456
+
4460 void duplicateObjectData( uint objID, const char* old_label, const char* new_label );
+
4461
+
4463
+
4467 void renameObjectData( uint objID, const char* old_label, const char* new_label );
+
4468
+
4470
+
4476 std::vector<uint> filterObjectsByData( const std::vector<uint> &ObjIDs, const char* object_data, float threshold, const char* comparator) const;
+
4477
+
4479
+
4483 void translateObject(uint ObjID, const vec3& shift );
+
4484
+
4486
+
4490 void translateObject(const std::vector<uint>& ObjIDs, const vec3& shift );
+
4491
+
4493
+
4498 void rotateObject(uint ObjID, float rotation_radians, const char* rotation_axis_xyz );
+
4499
+
4501
+
4506 void rotateObject(const std::vector<uint>& ObjIDs, float rotation_radians, const char* rotation_axis_xyz );
+
4507
+
4509
+
4514 void rotateObject(uint ObjID, float rotation_radians, const vec3& rotation_axis_vector );
+
4515
+
4517
+
4522 void rotateObject(const std::vector<uint>& ObjIDs, float rotation_radians, const vec3& rotation_axis_vector );
+
4523
+
4525
+
4531 void rotateObject(uint ObjID, float rotation_radians, const vec3& rotation_origin, const vec3& rotation_axis_vector );
+
4532
+
4534
+
4540 void rotateObject(const std::vector<uint>& ObjIDs, float rotation_radians, const vec3& rotation_origin, const vec3& rotation_axis_vector );
+
4541
+
4543
+
4547 void scaleObject( uint ObjID, const helios::vec3 &scalefact );
+
4548
+
4550
+
4554 void scaleObject( const std::vector<uint>& ObjIDs, const helios::vec3 &scalefact );
+
4555
+
4557
+
4561 void scaleObjectAboutCenter( uint ObjID, const helios::vec3 &scalefact );
+
4562
+
4564
+
4568 void scaleObjectAboutCenter( const std::vector<uint>& ObjIDs, const helios::vec3 &scalefact );
+
4569
4571
-
4573
-
4578 void scaleObjectAboutPoint( const std::vector<uint>& ObjIDs, const helios::vec3 &scalefact, const helios::vec3 &point );
-
4579
-
4581
-
4584 std::vector<uint> getObjectPrimitiveUUIDs( uint ObjID ) const;
-
4585
+
4576 void scaleObjectAboutPoint( uint ObjID, const helios::vec3 &scalefact, const helios::vec3 &point );
+
4577
+
4579
+
4584 void scaleObjectAboutPoint( const std::vector<uint>& ObjIDs, const helios::vec3 &scalefact, const helios::vec3 &point );
+
4585
4587
-
4590 std::vector<uint> getObjectPrimitiveUUIDs( const std::vector<uint> &ObjIDs) const;
+
4590 std::vector<uint> getObjectPrimitiveUUIDs( uint ObjID ) const;
4591
4593
-
4596 std::vector<uint> getObjectPrimitiveUUIDs( const std::vector<std::vector<uint> > &ObjIDs) const;
-
4597
+
4596 std::vector<uint> getObjectPrimitiveUUIDs( const std::vector<uint> &ObjIDs) const;
+
4597
4599
-
4602 helios::ObjectType getObjectType( uint ObjID ) const;
+
4602 std::vector<uint> getObjectPrimitiveUUIDs( const std::vector<std::vector<uint> > &ObjIDs) const;
4603
4605
-
4608 Tile* getTileObjectPointer(uint ObjID ) const;
+
4608 helios::ObjectType getObjectType( uint ObjID ) const;
4609
4611
-
4614 float getTileObjectAreaRatio(uint ObjectID) const;
+
4614 Tile* getTileObjectPointer(uint ObjID ) const;
4615
4617
-
4620 std::vector<float> getTileObjectAreaRatio(const std::vector<uint> &ObjectID) const;
+
4620 float getTileObjectAreaRatio(uint ObjectID) const;
4621
4623
-
4627 void setTileObjectSubdivisionCount(const std::vector<uint> &ObjectIDs, const int2 &new_subdiv);
-
4628
-
4630
-
4634 void setTileObjectSubdivisionCount(const std::vector<uint> &ObjectIDs, float area_ratio);
-
4635
-
4637
-
4642 helios::vec3 getTileObjectCenter(uint ObjID) const;
-
4643
-
4645
-
4648 helios::vec2 getTileObjectSize(uint ObjID) const;
+
4626 std::vector<float> getTileObjectAreaRatio(const std::vector<uint> &ObjectID) const;
+
4627
+
4629
+
4633 void setTileObjectSubdivisionCount(const std::vector<uint> &ObjectIDs, const int2 &new_subdiv);
+
4634
+
4636
+
4640 void setTileObjectSubdivisionCount(const std::vector<uint> &ObjectIDs, float area_ratio);
+
4641
+
4643
+
4648 helios::vec3 getTileObjectCenter(uint ObjID) const;
4649
4651
-
4654 helios::int2 getTileObjectSubdivisionCount(uint ObjID) const;
+
4654 helios::vec2 getTileObjectSize(uint ObjID) const;
4655
4657
-
4660 helios::vec3 getTileObjectNormal(uint ObjID) const;
+
4660 helios::int2 getTileObjectSubdivisionCount(uint ObjID) const;
4661
4663
-
4666 std::vector<helios::vec2> getTileObjectTextureUV(uint ObjID) const;
+
4666 helios::vec3 getTileObjectNormal(uint ObjID) const;
4667
4669
-
4672 std::vector<helios::vec3> getTileObjectVertices(uint ObjID) const;
+
4672 std::vector<helios::vec2> getTileObjectTextureUV(uint ObjID) const;
4673
4675
-
4678 Sphere* getSphereObjectPointer(uint ObjID ) const;
+
4678 std::vector<helios::vec3> getTileObjectVertices(uint ObjID) const;
4679
4681
-
4684 helios::vec3 getSphereObjectCenter(uint ObjID) const;
+
4684 Sphere* getSphereObjectPointer(uint ObjID ) const;
4685
4687
-
4690 helios::vec3 getSphereObjectRadius(uint ObjID) const;
+
4690 helios::vec3 getSphereObjectCenter(uint ObjID) const;
4691
4693
-
4696 uint getSphereObjectSubdivisionCount(uint ObjID) const;
-
4697
+
4696 helios::vec3 getSphereObjectRadius(uint ObjID) const;
+
4697
4699
-
4702 float getSphereObjectVolume( uint ObjID ) const;
-
4703
+
4702 uint getSphereObjectSubdivisionCount(uint ObjID) const;
+
4703
4705
-
4708 Tube* getTubeObjectPointer(uint ObjID ) const;
+
4708 float getSphereObjectVolume( uint ObjID ) const;
4709
4711
-
4714 uint getTubeObjectSubdivisionCount(uint ObjectID) const;
+
4714 Tube* getTubeObjectPointer(uint ObjID ) const;
4715
4717
-
4720 std::vector<helios::vec3> getTubeObjectNodes(uint ObjID) const;
+
4720 uint getTubeObjectSubdivisionCount(uint ObjectID) const;
4721
4723
-
4726 std::vector<float> getTubeObjectNodeRadii(uint ObjID) const;
+
4726 std::vector<helios::vec3> getTubeObjectNodes(uint ObjID) const;
4727
4729
-
4732 std::vector<RGBcolor> getTubeObjectNodeColors(uint ObjID) const;
-
4733
+
4732 std::vector<float> getTubeObjectNodeRadii(uint ObjID) const;
+
4733
4735
-
4738 float getTubeObjectVolume( uint ObjID ) const;
+
4738 std::vector<RGBcolor> getTubeObjectNodeColors(uint ObjID) const;
4739
4741
-
4745 float getTubeObjectSegmentVolume( uint ObjID, uint segment_index ) const;
-
4746
-
4748
-
4754 void appendTubeSegment(uint ObjID, const helios::vec3 &node_position, float radius, const RGBcolor &color );
-
4755
-
4757
-
4764 void appendTubeSegment( uint ObjID, const helios::vec3 &node_position, float node_radius, const char* texturefile, const helios::vec2 &textureuv_ufrac );
-
4765
-
4767
-
4771 void scaleTubeGirth( uint ObjID, float scale_factor );
-
4772
-
4774
-
4778 void setTubeRadii( uint ObjID, const std::vector<float> &node_radii );
-
4779
-
4781
-
4785 void scaleTubeLength( uint ObjID, float scale_factor );
-
4786
-
4788
-
4792 void setTubeNodes( uint ObjID, const std::vector<helios::vec3> &node_xyz );
-
4793
-
4795
-
4798 Box* getBoxObjectPointer(uint ObjID ) const;
-
4799
+
4744 float getTubeObjectVolume( uint ObjID ) const;
+
4745
+
4747
+
4751 float getTubeObjectSegmentVolume( uint ObjID, uint segment_index ) const;
+
4752
+
4754
+
4760 void appendTubeSegment(uint ObjID, const helios::vec3 &node_position, float radius, const RGBcolor &color );
+
4761
+
4763
+
4770 void appendTubeSegment( uint ObjID, const helios::vec3 &node_position, float node_radius, const char* texturefile, const helios::vec2 &textureuv_ufrac );
+
4771
+
4773
+
4777 void scaleTubeGirth( uint ObjID, float scale_factor );
+
4778
+
4780
+
4784 void setTubeRadii( uint ObjID, const std::vector<float> &node_radii );
+
4785
+
4787
+
4791 void scaleTubeLength( uint ObjID, float scale_factor );
+
4792
+
4794
+
4798 void setTubeNodes( uint ObjID, const std::vector<helios::vec3> &node_xyz );
+
4799
4801
-
4804 helios::vec3 getBoxObjectCenter(uint ObjID) const;
+
4804 Box* getBoxObjectPointer(uint ObjID ) const;
4805
4807
-
4810 helios::vec3 getBoxObjectSize(uint ObjID) const;
+
4810 helios::vec3 getBoxObjectCenter(uint ObjID) const;
4811
4813
-
4816 helios::int3 getBoxObjectSubdivisionCount(uint ObjID) const;
-
4817
+
4816 helios::vec3 getBoxObjectSize(uint ObjID) const;
+
4817
4819
-
4822 float getBoxObjectVolume( uint ObjID ) const;
-
4823
+
4822 helios::int3 getBoxObjectSubdivisionCount(uint ObjID) const;
+
4823
4825
-
4828 Disk* getDiskObjectPointer(uint ObjID ) const;
+
4828 float getBoxObjectVolume( uint ObjID ) const;
4829
4831
-
4834 helios::vec3 getDiskObjectCenter(uint ObjID) const;
+
4834 Disk* getDiskObjectPointer(uint ObjID ) const;
4835
4837
-
4840 helios::vec2 getDiskObjectSize(uint ObjID) const;
+
4840 helios::vec3 getDiskObjectCenter(uint ObjID) const;
4841
4843
-
4846 uint getDiskObjectSubdivisionCount(uint ObjID) const;
+
4846 helios::vec2 getDiskObjectSize(uint ObjID) const;
4847
4849
-
4852 Polymesh* getPolymeshObjectPointer(uint ObjID ) const;
-
4853
+
4852 uint getDiskObjectSubdivisionCount(uint ObjID) const;
+
4853
4855
-
4858 float getPolymeshObjectVolume( uint ObjID ) const;
-
4859
+
4858 Polymesh* getPolymeshObjectPointer(uint ObjID ) const;
+
4859
4861
-
4864 Cone* getConeObjectPointer( uint ObjID ) const;
+
4864 float getPolymeshObjectVolume( uint ObjID ) const;
4865
4867
-
4870 uint getConeObjectSubdivisionCount(uint ObjID) const;
+
4870 Cone* getConeObjectPointer( uint ObjID ) const;
4871
4873
-
4876 std::vector<helios::vec3> getConeObjectNodes(uint ObjID) const;
+
4876 uint getConeObjectSubdivisionCount(uint ObjID) const;
4877
4879
-
4882 std::vector<float> getConeObjectNodeRadii(uint ObjID) const;
+
4882 std::vector<helios::vec3> getConeObjectNodes(uint ObjID) const;
4883
4885
-
4888 helios::vec3 getConeObjectNode(uint ObjID, int number) const;
+
4888 std::vector<float> getConeObjectNodeRadii(uint ObjID) const;
4889
4891
-
4894 float getConeObjectNodeRadius(uint ObjID, int number) const;
+
4894 helios::vec3 getConeObjectNode(uint ObjID, int number) const;
4895
4897
-
4900 helios::vec3 getConeObjectAxisUnitVector(uint ObjID) const;
+
4900 float getConeObjectNodeRadius(uint ObjID, int number) const;
4901
4903
-
4907 float getConeObjectLength(uint ObjID) const;
-
4908
-
4910
-
4913 float getConeObjectVolume( uint ObjID ) const;
-
4914
+
4906 helios::vec3 getConeObjectAxisUnitVector(uint ObjID) const;
+
4907
+
4909
+
4913 float getConeObjectLength(uint ObjID) const;
+
4914
4916
-
4925 uint addTileObject(const vec3 &center, const vec2 &size, const SphericalCoord &rotation, const int2 &subdiv);
-
4926
-
4928
-
4937 uint addTileObject(const vec3 &center, const vec2 &size, const SphericalCoord &rotation, const int2 &subdiv, const RGBcolor &color );
-
4938
-
4940
-
4949 uint addTileObject(const vec3 &center, const vec2 &size, const SphericalCoord &rotation, const int2 &subdiv, const char* texturefile );
-
4950
-
4952
-
4960 uint addSphereObject(uint Ndivs, const vec3 &center, float radius );
-
4961
-
4963
-
4971 uint addSphereObject(uint Ndivs, const vec3 &center, float radius, const RGBcolor &color );
-
4972
-
4974
-
4982 uint addSphereObject(uint Ndivs, const vec3 &center, float radius, const char* texturefile );
-
4983
-
4985
-
4993 uint addSphereObject(uint Ndivs, const vec3 &center, const vec3 &radius );
-
4994
-
4996
-
5004 uint addSphereObject(uint Ndivs, const vec3 &center, const vec3 &radius, const RGBcolor &color );
-
5005
-
5007
-
5015 uint addSphereObject(uint Ndivs, const vec3 &center, const vec3 &radius, const char* texturefile );
-
5016
-
5018
-
5027 uint addTubeObject(uint radial_subdivisions, const std::vector<vec3> &nodes, const std::vector<float> &radius );
-
5028
-
5030
-
5039 uint addTubeObject(uint radial_subdivisions, const std::vector<vec3> &nodes, const std::vector<float> &radius, const std::vector<RGBcolor> &color );
-
5040
-
5042
-
5052 uint addTubeObject(uint radial_subdivisions, const std::vector<vec3> &nodes, const std::vector<float> &radius, const char* texturefile );
-
5053
-
5055
-
5066 uint addTubeObject(uint radial_subdivisions, const std::vector<vec3> &nodes, const std::vector<float> &radius, const char* texturefile, const std::vector<float> &textureuv_vfrac );
-
5067
-
5069
-
5078 uint addBoxObject(const vec3 &center, const vec3 &size, const int3 &subdiv );
-
5079
-
5081
-
5090 uint addBoxObject(const vec3 &center, const vec3 &size, const int3 &subdiv, const RGBcolor &color );
-
5091
-
5093
-
5102 uint addBoxObject(const vec3 &center, const vec3 &size, const int3 &subdiv, const char* texturefile );
-
5103
-
5105
-
5115 uint addBoxObject(const vec3 &center, const vec3 &size, const int3 &subdiv, const RGBcolor &color, bool reverse_normals );
-
5116
-
5118
-
5127 uint addBoxObject(vec3 center, const vec3 &size, const int3 &subdiv, const char* texturefile, bool reverse_normals );
-
5128
-
5130
-
5139 uint addDiskObject(uint Ndivs, const helios::vec3& center, const helios::vec2& size );
-
5140
-
5142
-
5151 uint addDiskObject(uint Ndivs, const helios::vec3& center, const helios::vec2& size, const helios::SphericalCoord& rotation );
-
5152
-
5154
-
5163 uint addDiskObject(uint Ndivs, const helios::vec3& center, const helios::vec2& size, const helios::SphericalCoord& rotation, const helios::RGBcolor& color );
-
5164
-
5166
-
5175 uint addDiskObject(uint Ndivs, const helios::vec3& center, const helios::vec2& size, const helios::SphericalCoord& rotation, const helios::RGBAcolor& color );
-
5176
-
5178
-
5188 uint addDiskObject(uint Ndivs, const helios::vec3& center, const helios::vec2& size, const helios::SphericalCoord& rotation, const char* texture_file );
-
5189
-
5191
-
5200 uint addDiskObject(const int2 &Ndivs, const helios::vec3& center, const helios::vec2& size, const helios::SphericalCoord& rotation, const helios::RGBcolor& color );
-
5201
-
5203
-
5212 uint addDiskObject(const int2 &Ndivs, const helios::vec3& center, const helios::vec2& size, const helios::SphericalCoord& rotation, const helios::RGBAcolor& color );
-
5213
-
5215
-
5225 uint addDiskObject(const int2 &Ndivs, const helios::vec3& center, const helios::vec2& size, const helios::SphericalCoord& rotation, const char* texturefile );
-
5226
-
5228
-
5233 uint addPolymeshObject(const std::vector<uint> &UUIDs );
-
5234
-
5236
-
5247 uint addConeObject(uint Ndivs, const vec3 &node0, const vec3 &node1, float radius0, float radius1 );
-
5248
-
5250
-
5261 uint addConeObject(uint Ndivs, const vec3 &node0, const vec3 &node1, float radius0, float radius1, const RGBcolor &color );
-
5262
-
5264
-
5275 uint addConeObject(uint Ndivs, const vec3 &node0, const vec3 &node1, float radius0, float radius1, const char* texturefile );
-
5276
-
5278
-
5286 std::vector<uint> addSphere(uint Ndivs, const vec3 &center, float radius );
-
5287
-
5289
-
5297 std::vector<uint> addSphere(uint Ndivs, const vec3 &center, float radius, const RGBcolor &color );
-
5298
-
5300
-
5308 std::vector<uint> addSphere(uint Ndivs, const vec3 &center, float radius, const char* texturefile );
-
5309
-
5311
-
5320 std::vector<uint> addTile(const vec3 &center, const vec2 &size, const SphericalCoord &rotation, const int2 &subdiv );
-
5321
-
5323
-
5332 std::vector<uint> addTile(const vec3 &center, const vec2 &size, const SphericalCoord &rotation, const int2 &subdiv, const RGBcolor &color );
-
5333
-
5335
-
5344 std::vector<uint> addTile(const vec3 &center, const vec2 &size, const SphericalCoord &rotation, const int2 &subdiv, const char* texturefile );
-
5345
-
5347
-
5356 std::vector<uint> addTube(uint Ndivs, const std::vector<vec3> &nodes, const std::vector<float> &radius );
-
5357
-
5359
-
5368 std::vector<uint> addTube(uint radial_subdivisions, const std::vector<vec3> &nodes, const std::vector<float> &radius, const std::vector<RGBcolor> &color );
-
5369
-
5371
-
5380 std::vector<uint> addTube(uint radial_subdivisions, const std::vector<vec3> &nodes, const std::vector<float> &radius, const char* texturefile );
-
5381
-
5383
-
5392 std::vector<uint> addBox(const vec3 &center, const vec3 &size, const int3 &subdiv );
-
5393
-
5395
-
5404 std::vector<uint> addBox(const vec3 &center, const vec3 &size, const int3 &subdiv, const RGBcolor &color );
-
5405
-
5407
-
5416 std::vector<uint> addBox(const vec3 &center, const vec3 &size, const int3 &subdiv, const char* texturefile );
-
5417
-
5419
-
5429 std::vector<uint> addBox(const vec3 &center, const vec3 &size, const int3 &subdiv, const RGBcolor &color, bool reverse_normals );
-
5430
-
5432
-
5441 std::vector<uint> addBox(const vec3 &center, const vec3 &size, const int3 &subdiv, const char* texturefile, bool reverse_normals );
-
5442
-
5444
-
5453 std::vector<uint> addDisk(uint Ndivs, const helios::vec3& center, const helios::vec2& size );
-
5454
-
5456
-
5465 std::vector<uint> addDisk(uint Ndivs, const helios::vec3& center, const helios::vec2& size, const helios::SphericalCoord& rotation );
-
5466
-
5468
-
5477 std::vector<uint> addDisk(uint Ndivs, const helios::vec3& center, const helios::vec2& size, const helios::SphericalCoord& rotation, const helios::RGBcolor& color );
-
5478
-
5480
-
5489 std::vector<uint> addDisk(uint Ndivs, const helios::vec3& center, const helios::vec2& size, const helios::SphericalCoord& rotation, const helios::RGBAcolor& color );
-
5490
-
5492
-
5502 std::vector<uint> addDisk(uint Ndivs, const helios::vec3& center, const helios::vec2& size, const helios::SphericalCoord& rotation, const char* texture_file );
-
5503
-
5505
-
5514 std::vector<uint> addDisk(const int2 &Ndivs, const helios::vec3& center, const helios::vec2& size, const helios::SphericalCoord& rotation, const helios::RGBcolor& color );
-
5515
-
5517
-
5526 std::vector<uint> addDisk(const int2 &Ndivs, const helios::vec3& center, const helios::vec2& size, const helios::SphericalCoord& rotation, const helios::RGBAcolor& color );
-
5527
-
5529
-
5539 std::vector<uint> addDisk(const int2 &Ndivs, const helios::vec3& center, const helios::vec2& size, const helios::SphericalCoord& rotation, const char* texturefile );
-
5540
-
5542
-
5552 std::vector<uint> addCone(uint Ndivs, const vec3 &node0, const vec3 &node1, float radius0, float radius1 );
-
5553
-
5555
-
5565 std::vector<uint> addCone(uint Ndivs, const vec3 &node0, const vec3 &node1, float radius0, float radius1, RGBcolor &color );
-
5566
-
5568
-
5578 std::vector<uint> addCone(uint Ndivs, const vec3 &node0, const vec3 &node1, float radius0, float radius1, const char* texturefile );
-
5579
-
5581
-
5588 void addTimeseriesData(const char* label, float value, const Date &date, const Time &time );
-
5589
-
5591
-
5596 void setCurrentTimeseriesPoint(const char* label, uint index );
-
5597
-
5599
-
5606 float queryTimeseriesData(const char* label, const Date &date, const Time &time ) const;
-
5607
-
5609
-
5614 float queryTimeseriesData( const char* label ) const;
-
5615
-
5617
-
5623 float queryTimeseriesData( const char* label, uint index ) const;
-
5624
-
5626
-
5632 Time queryTimeseriesTime( const char* label, uint index ) const;
-
5633
-
5635
-
5641 Date queryTimeseriesDate( const char* label, uint index ) const;
-
5642
-
5644
-
5648 uint getTimeseriesLength( const char* label ) const;
-
5649
-
5651
-
5655 bool doesTimeseriesVariableExist( const char* label ) const;
-
5656
-
5658 void loadTabularTimeseriesData( const std::string &data_file, const std::vector<std::string> &column_labels, const std::string &delimiter, const std::string &date_string_format="YYYYMMDD", uint headerlines=0 );
-
5659
-
5661
-
5666 void getDomainBoundingBox( helios::vec2& xbounds, helios::vec2& ybounds, helios::vec2& zbounds ) const;
-
5667
-
5669
-
5675 void getDomainBoundingBox( const std::vector<uint>& UUIDs, helios::vec2& xbounds, helios::vec2& ybounds, helios::vec2& zbounds ) const;
-
5676
-
5678
-
5682 void getDomainBoundingSphere( helios::vec3& center, float& radius ) const;
-
5683
-
5685
-
5690 void getDomainBoundingSphere( const std::vector<uint>& UUIDs, helios::vec3& center, float& radius ) const;
-
5691
-
5693
-
5696 void cropDomainX(const vec2 &xbounds );
+
4919 float getConeObjectVolume( uint ObjID ) const;
+
4920
+
4922
+
4931 uint addTileObject(const vec3 &center, const vec2 &size, const SphericalCoord &rotation, const int2 &subdiv);
+
4932
+
4934
+
4943 uint addTileObject(const vec3 &center, const vec2 &size, const SphericalCoord &rotation, const int2 &subdiv, const RGBcolor &color );
+
4944
+
4946
+
4955 uint addTileObject(const vec3 &center, const vec2 &size, const SphericalCoord &rotation, const int2 &subdiv, const char* texturefile );
+
4956
+
4958
+
4966 uint addSphereObject(uint Ndivs, const vec3 &center, float radius );
+
4967
+
4969
+
4977 uint addSphereObject(uint Ndivs, const vec3 &center, float radius, const RGBcolor &color );
+
4978
+
4980
+
4988 uint addSphereObject(uint Ndivs, const vec3 &center, float radius, const char* texturefile );
+
4989
+
4991
+
4999 uint addSphereObject(uint Ndivs, const vec3 &center, const vec3 &radius );
+
5000
+
5002
+
5010 uint addSphereObject(uint Ndivs, const vec3 &center, const vec3 &radius, const RGBcolor &color );
+
5011
+
5013
+
5021 uint addSphereObject(uint Ndivs, const vec3 &center, const vec3 &radius, const char* texturefile );
+
5022
+
5024
+
5033 uint addTubeObject(uint radial_subdivisions, const std::vector<vec3> &nodes, const std::vector<float> &radius );
+
5034
+
5036
+
5045 uint addTubeObject(uint radial_subdivisions, const std::vector<vec3> &nodes, const std::vector<float> &radius, const std::vector<RGBcolor> &color );
+
5046
+
5048
+
5058 uint addTubeObject(uint radial_subdivisions, const std::vector<vec3> &nodes, const std::vector<float> &radius, const char* texturefile );
+
5059
+
5061
+
5072 uint addTubeObject(uint radial_subdivisions, const std::vector<vec3> &nodes, const std::vector<float> &radius, const char* texturefile, const std::vector<float> &textureuv_vfrac );
+
5073
+
5075
+
5084 uint addBoxObject(const vec3 &center, const vec3 &size, const int3 &subdiv );
+
5085
+
5087
+
5096 uint addBoxObject(const vec3 &center, const vec3 &size, const int3 &subdiv, const RGBcolor &color );
+
5097
+
5099
+
5108 uint addBoxObject(const vec3 &center, const vec3 &size, const int3 &subdiv, const char* texturefile );
+
5109
+
5111
+
5121 uint addBoxObject(const vec3 &center, const vec3 &size, const int3 &subdiv, const RGBcolor &color, bool reverse_normals );
+
5122
+
5124
+
5133 uint addBoxObject(vec3 center, const vec3 &size, const int3 &subdiv, const char* texturefile, bool reverse_normals );
+
5134
+
5136
+
5145 uint addDiskObject(uint Ndivs, const helios::vec3& center, const helios::vec2& size );
+
5146
+
5148
+
5157 uint addDiskObject(uint Ndivs, const helios::vec3& center, const helios::vec2& size, const helios::SphericalCoord& rotation );
+
5158
+
5160
+
5169 uint addDiskObject(uint Ndivs, const helios::vec3& center, const helios::vec2& size, const helios::SphericalCoord& rotation, const helios::RGBcolor& color );
+
5170
+
5172
+
5181 uint addDiskObject(uint Ndivs, const helios::vec3& center, const helios::vec2& size, const helios::SphericalCoord& rotation, const helios::RGBAcolor& color );
+
5182
+
5184
+
5194 uint addDiskObject(uint Ndivs, const helios::vec3& center, const helios::vec2& size, const helios::SphericalCoord& rotation, const char* texture_file );
+
5195
+
5197
+
5206 uint addDiskObject(const int2 &Ndivs, const helios::vec3& center, const helios::vec2& size, const helios::SphericalCoord& rotation, const helios::RGBcolor& color );
+
5207
+
5209
+
5218 uint addDiskObject(const int2 &Ndivs, const helios::vec3& center, const helios::vec2& size, const helios::SphericalCoord& rotation, const helios::RGBAcolor& color );
+
5219
+
5221
+
5231 uint addDiskObject(const int2 &Ndivs, const helios::vec3& center, const helios::vec2& size, const helios::SphericalCoord& rotation, const char* texturefile );
+
5232
+
5234
+
5239 uint addPolymeshObject(const std::vector<uint> &UUIDs );
+
5240
+
5242
+
5253 uint addConeObject(uint Ndivs, const vec3 &node0, const vec3 &node1, float radius0, float radius1 );
+
5254
+
5256
+
5267 uint addConeObject(uint Ndivs, const vec3 &node0, const vec3 &node1, float radius0, float radius1, const RGBcolor &color );
+
5268
+
5270
+
5281 uint addConeObject(uint Ndivs, const vec3 &node0, const vec3 &node1, float radius0, float radius1, const char* texturefile );
+
5282
+
5284
+
5292 std::vector<uint> addSphere(uint Ndivs, const vec3 &center, float radius );
+
5293
+
5295
+
5303 std::vector<uint> addSphere(uint Ndivs, const vec3 &center, float radius, const RGBcolor &color );
+
5304
+
5306
+
5314 std::vector<uint> addSphere(uint Ndivs, const vec3 &center, float radius, const char* texturefile );
+
5315
+
5317
+
5326 std::vector<uint> addTile(const vec3 &center, const vec2 &size, const SphericalCoord &rotation, const int2 &subdiv );
+
5327
+
5329
+
5338 std::vector<uint> addTile(const vec3 &center, const vec2 &size, const SphericalCoord &rotation, const int2 &subdiv, const RGBcolor &color );
+
5339
+
5341
+
5350 std::vector<uint> addTile(const vec3 &center, const vec2 &size, const SphericalCoord &rotation, const int2 &subdiv, const char* texturefile );
+
5351
+
5353
+
5362 std::vector<uint> addTube(uint Ndivs, const std::vector<vec3> &nodes, const std::vector<float> &radius );
+
5363
+
5365
+
5374 std::vector<uint> addTube(uint radial_subdivisions, const std::vector<vec3> &nodes, const std::vector<float> &radius, const std::vector<RGBcolor> &color );
+
5375
+
5377
+
5386 std::vector<uint> addTube(uint radial_subdivisions, const std::vector<vec3> &nodes, const std::vector<float> &radius, const char* texturefile );
+
5387
+
5389
+
5398 std::vector<uint> addBox(const vec3 &center, const vec3 &size, const int3 &subdiv );
+
5399
+
5401
+
5410 std::vector<uint> addBox(const vec3 &center, const vec3 &size, const int3 &subdiv, const RGBcolor &color );
+
5411
+
5413
+
5422 std::vector<uint> addBox(const vec3 &center, const vec3 &size, const int3 &subdiv, const char* texturefile );
+
5423
+
5425
+
5435 std::vector<uint> addBox(const vec3 &center, const vec3 &size, const int3 &subdiv, const RGBcolor &color, bool reverse_normals );
+
5436
+
5438
+
5447 std::vector<uint> addBox(const vec3 &center, const vec3 &size, const int3 &subdiv, const char* texturefile, bool reverse_normals );
+
5448
+
5450
+
5459 std::vector<uint> addDisk(uint Ndivs, const helios::vec3& center, const helios::vec2& size );
+
5460
+
5462
+
5471 std::vector<uint> addDisk(uint Ndivs, const helios::vec3& center, const helios::vec2& size, const helios::SphericalCoord& rotation );
+
5472
+
5474
+
5483 std::vector<uint> addDisk(uint Ndivs, const helios::vec3& center, const helios::vec2& size, const helios::SphericalCoord& rotation, const helios::RGBcolor& color );
+
5484
+
5486
+
5495 std::vector<uint> addDisk(uint Ndivs, const helios::vec3& center, const helios::vec2& size, const helios::SphericalCoord& rotation, const helios::RGBAcolor& color );
+
5496
+
5498
+
5508 std::vector<uint> addDisk(uint Ndivs, const helios::vec3& center, const helios::vec2& size, const helios::SphericalCoord& rotation, const char* texture_file );
+
5509
+
5511
+
5520 std::vector<uint> addDisk(const int2 &Ndivs, const helios::vec3& center, const helios::vec2& size, const helios::SphericalCoord& rotation, const helios::RGBcolor& color );
+
5521
+
5523
+
5532 std::vector<uint> addDisk(const int2 &Ndivs, const helios::vec3& center, const helios::vec2& size, const helios::SphericalCoord& rotation, const helios::RGBAcolor& color );
+
5533
+
5535
+
5545 std::vector<uint> addDisk(const int2 &Ndivs, const helios::vec3& center, const helios::vec2& size, const helios::SphericalCoord& rotation, const char* texturefile );
+
5546
+
5548
+
5558 std::vector<uint> addCone(uint Ndivs, const vec3 &node0, const vec3 &node1, float radius0, float radius1 );
+
5559
+
5561
+
5571 std::vector<uint> addCone(uint Ndivs, const vec3 &node0, const vec3 &node1, float radius0, float radius1, RGBcolor &color );
+
5572
+
5574
+
5584 std::vector<uint> addCone(uint Ndivs, const vec3 &node0, const vec3 &node1, float radius0, float radius1, const char* texturefile );
+
5585
+
5587
+
5594 void addTimeseriesData(const char* label, float value, const Date &date, const Time &time );
+
5595
+
5597
+
5602 void setCurrentTimeseriesPoint(const char* label, uint index );
+
5603
+
5605
+
5612 float queryTimeseriesData(const char* label, const Date &date, const Time &time ) const;
+
5613
+
5615
+
5620 float queryTimeseriesData( const char* label ) const;
+
5621
+
5623
+
5629 float queryTimeseriesData( const char* label, uint index ) const;
+
5630
+
5632
+
5638 Time queryTimeseriesTime( const char* label, uint index ) const;
+
5639
+
5641
+
5647 Date queryTimeseriesDate( const char* label, uint index ) const;
+
5648
+
5650
+
5654 uint getTimeseriesLength( const char* label ) const;
+
5655
+
5657
+
5661 bool doesTimeseriesVariableExist( const char* label ) const;
+
5662
+
5664 void loadTabularTimeseriesData( const std::string &data_file, const std::vector<std::string> &column_labels, const std::string &delimiter, const std::string &date_string_format="YYYYMMDD", uint headerlines=0 );
+
5665
+
5667
+
5672 void getDomainBoundingBox( helios::vec2& xbounds, helios::vec2& ybounds, helios::vec2& zbounds ) const;
+
5673
+
5675
+
5681 void getDomainBoundingBox( const std::vector<uint>& UUIDs, helios::vec2& xbounds, helios::vec2& ybounds, helios::vec2& zbounds ) const;
+
5682
+
5684
+
5688 void getDomainBoundingSphere( helios::vec3& center, float& radius ) const;
+
5689
+
5691
+
5696 void getDomainBoundingSphere( const std::vector<uint>& UUIDs, helios::vec3& center, float& radius ) const;
5697
5699
-
5702 void cropDomainY(const vec2 &ybounds );
+
5702 void cropDomainX(const vec2 &xbounds );
5703
5705
-
5708 void cropDomainZ(const vec2 &zbounds );
+
5708 void cropDomainY(const vec2 &ybounds );
5709
5711
-
5717 void cropDomain( std::vector<uint> &UUIDs, const vec2 &xbounds, const vec2 &ybounds, const vec2 &zbounds );
-
5718
-
5720
-
5725 void cropDomain(const vec2 &xbounds, const vec2 &ybounds, const vec2 &zbounds );
+
5714 void cropDomainZ(const vec2 &zbounds );
+
5715
+
5717
+
5723 void cropDomain( std::vector<uint> &UUIDs, const vec2 &xbounds, const vec2 &ybounds, const vec2 &zbounds );
+
5724
5726
-
5728
-
5734 void colorPrimitiveByDataPseudocolor( const std::vector<uint> &UUIDs, const std::string &primitive_data, const std::string &colormap, uint Ncolors );
-
5735
-
5737
-
5745 void colorPrimitiveByDataPseudocolor( const std::vector<uint> &UUIDs, const std::string &primitive_data, const std::string &colormap, uint Ncolors, float data_min, float data_max );
-
5746
-
5748
-
5754 std::vector<uint> loadXML( const char* filename, bool quiet = false );
-
5755
-
5757
-
5760 std::vector<std::string> getLoadedXMLFiles();
-
5761
+
5731 void cropDomain(const vec2 &xbounds, const vec2 &ybounds, const vec2 &zbounds );
+
5732
+
5734
+
5740 void colorPrimitiveByDataPseudocolor( const std::vector<uint> &UUIDs, const std::string &primitive_data, const std::string &colormap, uint Ncolors );
+
5741
+
5743
+
5751 void colorPrimitiveByDataPseudocolor( const std::vector<uint> &UUIDs, const std::string &primitive_data, const std::string &colormap, uint Ncolors, float data_min, float data_max );
+
5752
+
5754
+
5760 std::vector<uint> loadXML( const char* filename, bool quiet = false );
+
5761
5763
-
5769 static bool scanXMLForTag( const std::string &filename, const std::string &tag, const std::string &label="" );
-
5770
-
5772
-
5776 void writeXML( const char* filename, bool quiet = false ) const;
-
5777
-
5779
-
5784 void writeXML( const char* filename, const std::vector<uint> &UUIDs, bool quiet = false ) const;
+
5766 std::vector<std::string> getLoadedXMLFiles();
+
5767
+
5769
+
5775 static bool scanXMLForTag( const std::string &filename, const std::string &tag, const std::string &label="" );
+
5776
+
5778
+
5782 void writeXML( const char* filename, bool quiet = false ) const;
+
5783
5785
-
5787
-
5792 void writeXML_byobject( const char* filename, const std::vector<uint> &UUIDs, bool quiet = false ) const;
-
5793
-
5795
-
5800 void writePrimitiveData( std::string filename, const std::vector<std::string> &column_format, bool print_header = false ) const;
-
5801
-
5803
-
5809 void writePrimitiveData( std::string filename, const std::vector<std::string> &column_format, const std::vector<uint> &UUIDs, bool print_header = false ) const;
-
5810
-
5812
-
5818 std::vector<uint> loadPLY(const char* filename, bool silent=false );
-
5819
-
5821
-
5830 std::vector<uint> loadPLY(const char* filename, const vec3 &origin, float height, const std::string &upaxis="YUP", bool silent=false );
-
5831
-
5833
-
5843 std::vector<uint> loadPLY(const char* filename, const vec3 &origin, float height, const SphericalCoord &rotation, const std::string &upaxis="YUP", bool silent=false );
-
5844
-
5846
-
5855 std::vector<uint> loadPLY(const char* filename, const vec3 &origin, float height, const RGBcolor &default_color, const std::string &upaxis="YUP", bool silent=false );
-
5856
-
5858
-
5868 std::vector<uint> loadPLY(const char* filename, const vec3 &origin, float height, const SphericalCoord &rotation, const RGBcolor &default_color, const std::string &upaxis="YUP", bool silent=false );
-
5869
-
5871
-
5874 void writePLY( const char* filename ) const;
-
5875
+
5790 void writeXML( const char* filename, const std::vector<uint> &UUIDs, bool quiet = false ) const;
+
5791
+
5793
+
5798 void writeXML_byobject( const char* filename, const std::vector<uint> &UUIDs, bool quiet = false ) const;
+
5799
+
5801
+
5806 void writePrimitiveData( std::string filename, const std::vector<std::string> &column_format, bool print_header = false ) const;
+
5807
+
5809
+
5815 void writePrimitiveData( std::string filename, const std::vector<std::string> &column_format, const std::vector<uint> &UUIDs, bool print_header = false ) const;
+
5816
+
5818
+
5824 std::vector<uint> loadPLY(const char* filename, bool silent=false );
+
5825
+
5827
+
5836 std::vector<uint> loadPLY(const char* filename, const vec3 &origin, float height, const std::string &upaxis="YUP", bool silent=false );
+
5837
+
5839
+
5849 std::vector<uint> loadPLY(const char* filename, const vec3 &origin, float height, const SphericalCoord &rotation, const std::string &upaxis="YUP", bool silent=false );
+
5850
+
5852
+
5861 std::vector<uint> loadPLY(const char* filename, const vec3 &origin, float height, const RGBcolor &default_color, const std::string &upaxis="YUP", bool silent=false );
+
5862
+
5864
+
5874 std::vector<uint> loadPLY(const char* filename, const vec3 &origin, float height, const SphericalCoord &rotation, const RGBcolor &default_color, const std::string &upaxis="YUP", bool silent=false );
+
5875
5877
-
5881 std::vector<uint> loadOBJ(const char* filename, bool silent=false );
-
5882
-
5884
-
5893 std::vector<uint> loadOBJ(const char* filename, const vec3 &origin, float height, const SphericalCoord &rotation, const RGBcolor &default_color, bool silent=false );
-
5894
-
5896
-
5906 std::vector<uint> loadOBJ(const char* filename, const vec3 &origin, float height, const SphericalCoord &rotation, const RGBcolor &default_color, const char* upaxis, bool silent=false );
-
5907
-
5908
-
5910
-
5920 std::vector<uint> loadOBJ(const char* filename, const vec3 &origin, const helios::vec3 &scale, const SphericalCoord &rotation, const RGBcolor &default_color, const char* upaxis, bool silent=false );
-
5921
-
5923
-
5926 void writeOBJ( const std::string &filename ) const;
+
5880 void writePLY( const char* filename ) const;
+
5881
+
5883
+
5887 std::vector<uint> loadOBJ(const char* filename, bool silent=false );
+
5888
+
5890
+
5899 std::vector<uint> loadOBJ(const char* filename, const vec3 &origin, float height, const SphericalCoord &rotation, const RGBcolor &default_color, bool silent=false );
+
5900
+
5902
+
5912 std::vector<uint> loadOBJ(const char* filename, const vec3 &origin, float height, const SphericalCoord &rotation, const RGBcolor &default_color, const char* upaxis, bool silent=false );
+
5913
+
5914
+
5916
+
5926 std::vector<uint> loadOBJ(const char* filename, const vec3 &origin, const helios::vec3 &scale, const SphericalCoord &rotation, const RGBcolor &default_color, const char* upaxis, bool silent=false );
5927
5929
-
5933 void writeOBJ( const std::string &filename, const std::vector<uint> &UUIDs ) const;
-
5934
-
5936
-
5941 void writeOBJ( const std::string &filename, const std::vector<uint> &UUIDs, const std::vector<std::string> &primitive_dat_fields ) const;
-
5942
-
5944
-
5950 void setDate( int day, int month, int year );
-
5951
-
5953
-
5957 void setDate(const Date &date );
-
5958
-
5960
-
5965 void setDate( int Julian_day, int year );
-
5966
-
5968
-
5972 helios::Date getDate() const;
-
5973
-
5975
-
5979 const char* getMonthString() const;
-
5980
-
5982
-
5986 int getJulianDate() const;
-
5987
-
5989
-
5995 void setTime( int minute, int hour );
-
5996
-
5998
-
6005 void setTime( int second, int minute, int hour );
-
6006
-
6008
-
6013 void setTime(const Time &time );
-
6014
-
6016
-
6020 helios::Time getTime() const;
-
6021
-
6023
-
6026 float randu();
+
5932 void writeOBJ( const std::string &filename ) const;
+
5933
+
5935
+
5939 void writeOBJ( const std::string &filename, const std::vector<uint> &UUIDs ) const;
+
5940
+
5942
+
5947 void writeOBJ( const std::string &filename, const std::vector<uint> &UUIDs, const std::vector<std::string> &primitive_dat_fields ) const;
+
5948
+
5950
+
5956 void setDate( int day, int month, int year );
+
5957
+
5959
+
5963 void setDate(const Date &date );
+
5964
+
5966
+
5971 void setDate( int Julian_day, int year );
+
5972
+
5974
+
5978 helios::Date getDate() const;
+
5979
+
5981
+
5985 const char* getMonthString() const;
+
5986
+
5988
+
5992 int getJulianDate() const;
+
5993
+
5995
+
6001 void setTime( int minute, int hour );
+
6002
+
6004
+
6011 void setTime( int second, int minute, int hour );
+
6012
+
6014
+
6019 void setTime(const Time &time );
+
6020
+
6022
+
6026 helios::Time getTime() const;
6027
6029
-
6034 float randu( float min, float max );
-
6035
-
6037
-
6042 int randu( int min, int max );
-
6043
-
6045
-
6048 float randn();
+
6032 float randu();
+
6033
+
6035
+
6040 float randu( float min, float max );
+
6041
+
6043
+
6048 int randu( int min, int max );
6049
6051
-
6056 float randn( float mean, float stddev );
+
6054 float randn();
+
6055
6057
-
6059
-
6063 void duplicatePrimitiveData( const char* existing_data_label, const char* copy_data_label );
-
6064
-
6066
-
6071 void calculatePrimitiveDataMean( const std::vector<uint> &UUIDs, const std::string &label, float &mean ) const;
+
6062 float randn( float mean, float stddev );
+
6063
+
6065
+
6069 void duplicatePrimitiveData( const char* existing_data_label, const char* copy_data_label );
+
6070
6072
-
6074
-
6079 void calculatePrimitiveDataMean( const std::vector<uint> &UUIDs, const std::string &label, double &mean ) const;
+
6077 void calculatePrimitiveDataMean( const std::vector<uint> &UUIDs, const std::string &label, float &mean ) const;
+
6078
6080
-
6082
-
6087 void calculatePrimitiveDataMean( const std::vector<uint> &UUIDs, const std::string &label, helios::vec2 &mean ) const;
+
6085 void calculatePrimitiveDataMean( const std::vector<uint> &UUIDs, const std::string &label, double &mean ) const;
+
6086
6088
-
6090
-
6095 void calculatePrimitiveDataMean( const std::vector<uint> &UUIDs, const std::string &label, helios::vec3 &mean ) const;
+
6093 void calculatePrimitiveDataMean( const std::vector<uint> &UUIDs, const std::string &label, helios::vec2 &mean ) const;
+
6094
6096
-
6098
-
6103 void calculatePrimitiveDataMean( const std::vector<uint> &UUIDs, const std::string &label, helios::vec4 &mean ) const;
+
6101 void calculatePrimitiveDataMean( const std::vector<uint> &UUIDs, const std::string &label, helios::vec3 &mean ) const;
+
6102
6104
-
6106
-
6111 void calculatePrimitiveDataAreaWeightedMean( const std::vector<uint> &UUIDs, const std::string &label, float &awt_mean ) const;
+
6109 void calculatePrimitiveDataMean( const std::vector<uint> &UUIDs, const std::string &label, helios::vec4 &mean ) const;
+
6110
6112
-
6114
-
6119 void calculatePrimitiveDataAreaWeightedMean( const std::vector<uint> &UUIDs, const std::string &label, double &awt_mean ) const;
+
6117 void calculatePrimitiveDataAreaWeightedMean( const std::vector<uint> &UUIDs, const std::string &label, float &awt_mean ) const;
+
6118
6120
-
6122
-
6127 void calculatePrimitiveDataAreaWeightedMean( const std::vector<uint> &UUIDs, const std::string &label, helios::vec2 &awt_mean ) const;
+
6125 void calculatePrimitiveDataAreaWeightedMean( const std::vector<uint> &UUIDs, const std::string &label, double &awt_mean ) const;
+
6126
6128
-
6130
-
6135 void calculatePrimitiveDataAreaWeightedMean( const std::vector<uint> &UUIDs, const std::string &label, helios::vec3 &awt_mean ) const;
+
6133 void calculatePrimitiveDataAreaWeightedMean( const std::vector<uint> &UUIDs, const std::string &label, helios::vec2 &awt_mean ) const;
+
6134
6136
-
6138
-
6143 void calculatePrimitiveDataAreaWeightedMean( const std::vector<uint> &UUIDs, const std::string &label, helios::vec4 &awt_mean ) const;
+
6141 void calculatePrimitiveDataAreaWeightedMean( const std::vector<uint> &UUIDs, const std::string &label, helios::vec3 &awt_mean ) const;
+
6142
6144
-
6146
-
6151 void calculatePrimitiveDataSum( const std::vector<uint> &UUIDs, const std::string &label, float &sum ) const;
+
6149 void calculatePrimitiveDataAreaWeightedMean( const std::vector<uint> &UUIDs, const std::string &label, helios::vec4 &awt_mean ) const;
+
6150
6152
-
6154
-
6159 void calculatePrimitiveDataSum( const std::vector<uint> &UUIDs, const std::string &label, double &sum ) const;
+
6157 void calculatePrimitiveDataSum( const std::vector<uint> &UUIDs, const std::string &label, float &sum ) const;
+
6158
6160
-
6162
-
6167 void calculatePrimitiveDataSum( const std::vector<uint> &UUIDs, const std::string &label, helios::vec2 &sum ) const;
+
6165 void calculatePrimitiveDataSum( const std::vector<uint> &UUIDs, const std::string &label, double &sum ) const;
+
6166
6168
-
6170
-
6175 void calculatePrimitiveDataSum( const std::vector<uint> &UUIDs, const std::string &label, helios::vec3 &sum ) const;
+
6173 void calculatePrimitiveDataSum( const std::vector<uint> &UUIDs, const std::string &label, helios::vec2 &sum ) const;
+
6174
6176
-
6178
-
6183 void calculatePrimitiveDataSum( const std::vector<uint> &UUIDs, const std::string &label, helios::vec4 &sum ) const;
+
6181 void calculatePrimitiveDataSum( const std::vector<uint> &UUIDs, const std::string &label, helios::vec3 &sum ) const;
+
6182
6184
-
6186
-
6191 void calculatePrimitiveDataAreaWeightedSum( const std::vector<uint> &UUIDs, const std::string &label, float &awt_sum ) const;
+
6189 void calculatePrimitiveDataSum( const std::vector<uint> &UUIDs, const std::string &label, helios::vec4 &sum ) const;
+
6190
6192
-
6194
-
6199 void calculatePrimitiveDataAreaWeightedSum( const std::vector<uint> &UUIDs, const std::string &label, double &sum ) const;
+
6197 void calculatePrimitiveDataAreaWeightedSum( const std::vector<uint> &UUIDs, const std::string &label, float &awt_sum ) const;
+
6198
6200
-
6202
-
6207 void calculatePrimitiveDataAreaWeightedSum( const std::vector<uint> &UUIDs, const std::string &label, helios::vec2 &sum ) const;
+
6205 void calculatePrimitiveDataAreaWeightedSum( const std::vector<uint> &UUIDs, const std::string &label, double &sum ) const;
+
6206
6208
-
6210
-
6215 void calculatePrimitiveDataAreaWeightedSum( const std::vector<uint> &UUIDs, const std::string &label, helios::vec3 &sum ) const;
+
6213 void calculatePrimitiveDataAreaWeightedSum( const std::vector<uint> &UUIDs, const std::string &label, helios::vec2 &sum ) const;
+
6214
6216
-
6218
-
6223 void calculatePrimitiveDataAreaWeightedSum( const std::vector<uint> &UUIDs, const std::string &label, helios::vec4 &sum ) const;
+
6221 void calculatePrimitiveDataAreaWeightedSum( const std::vector<uint> &UUIDs, const std::string &label, helios::vec3 &sum ) const;
+
6222
6224
-
6226
-
6232 void scalePrimitiveData( const std::vector<uint> &UUIDs, const std::string &label, float scaling_factor );
-
6233
-
6235
-
6240 void scalePrimitiveData( const std::string &label, float scaling_factor );
+
6229 void calculatePrimitiveDataAreaWeightedSum( const std::vector<uint> &UUIDs, const std::string &label, helios::vec4 &sum ) const;
+
6230
+
6232
+
6238 void scalePrimitiveData( const std::vector<uint> &UUIDs, const std::string &label, float scaling_factor );
+
6239
6241
-
6243
-
6249 void incrementPrimitiveData( const std::vector<uint> &UUIDs, const char* label, int increment );
-
6250
-
6252
-
6258 void incrementPrimitiveData( const std::vector<uint> &UUIDs, const char* label, uint increment );
-
6259
-
6261
-
6267 void incrementPrimitiveData( const std::vector<uint> &UUIDs, const char* label, float increment );
-
6268
-
6270
-
6276 void incrementPrimitiveData( const std::vector<uint> &UUIDs, const char* label, double increment );
-
6277
-
6279
-
6285 void aggregatePrimitiveDataSum( const std::vector<uint> &UUIDs, const std::vector<std::string> &primitive_data_labels, const std::string &result_primitive_data_label );
-
6286
-
6288
-
6294 void aggregatePrimitiveDataProduct( const std::vector<uint> &UUIDs, const std::vector<std::string> &primitive_data_labels, const std::string &result_primitive_data_label );
-
6295
-
6297
-
6301 float sumPrimitiveSurfaceArea( const std::vector<uint> &UUIDs ) const;
-
6302
-
6304
-
6312 std::vector<uint> filterPrimitivesByData( const std::vector<uint> &UUIDs, const std::string &primitive_data_label, float filter_value, const std::string &comparator );
-
6313
-
6315
-
6323 std::vector<uint> filterPrimitivesByData( const std::vector<uint> &UUIDs, const std::string &primitive_data_label, double filter_value, const std::string &comparator );
-
6324
-
6326
-
6334 std::vector<uint> filterPrimitivesByData( const std::vector<uint> &UUIDs, const std::string &primitive_data_label, int filter_value, const std::string &comparator );
-
6335
-
6337
-
6345 std::vector<uint> filterPrimitivesByData( const std::vector<uint> &UUIDs, const std::string &primitive_data_label, uint filter_value, const std::string &comparator );
-
6346
-
6348
-
6355 std::vector<uint> filterPrimitivesByData( const std::vector<uint> &UUIDs, const std::string &primitive_data_label, const std::string &filter_value );
-
6356
-
6358
-
6366 std::vector<uint> filterObjectsByData( const std::vector<uint> &objIDs, const std::string &object_data_label, float filter_value, const std::string &comparator );
-
6367
-
6369
-
6377 std::vector<uint> filterObjectsByData( const std::vector<uint> &objIDs, const std::string &object_data_label, double filter_value, const std::string &comparator );
-
6378
-
6380
-
6388 std::vector<uint> filterObjectsByData( const std::vector<uint> &objIDs, const std::string &object_data_label, int filter_value, const std::string &comparator );
-
6389
-
6391
-
6399 std::vector<uint> filterObjectsByData( const std::vector<uint> &objIDs, const std::string &object_data_label, uint filter_value, const std::string &comparator );
-
6400
-
6402
-
6409 std::vector<uint> filterObjectsByData( const std::vector<uint> &objIDs, const std::string &object_data_label, const std::string &filter_value );
-
6410
-
6411};
+
6246 void scalePrimitiveData( const std::string &label, float scaling_factor );
+
6247
+
6249
+
6255 void incrementPrimitiveData( const std::vector<uint> &UUIDs, const char* label, int increment );
+
6256
+
6258
+
6264 void incrementPrimitiveData( const std::vector<uint> &UUIDs, const char* label, uint increment );
+
6265
+
6267
+
6273 void incrementPrimitiveData( const std::vector<uint> &UUIDs, const char* label, float increment );
+
6274
+
6276
+
6282 void incrementPrimitiveData( const std::vector<uint> &UUIDs, const char* label, double increment );
+
6283
+
6285
+
6291 void aggregatePrimitiveDataSum( const std::vector<uint> &UUIDs, const std::vector<std::string> &primitive_data_labels, const std::string &result_primitive_data_label );
+
6292
+
6294
+
6300 void aggregatePrimitiveDataProduct( const std::vector<uint> &UUIDs, const std::vector<std::string> &primitive_data_labels, const std::string &result_primitive_data_label );
+
6301
+
6303
+
6307 float sumPrimitiveSurfaceArea( const std::vector<uint> &UUIDs ) const;
+
6308
+
6310
+
6318 std::vector<uint> filterPrimitivesByData( const std::vector<uint> &UUIDs, const std::string &primitive_data_label, float filter_value, const std::string &comparator );
+
6319
+
6321
+
6329 std::vector<uint> filterPrimitivesByData( const std::vector<uint> &UUIDs, const std::string &primitive_data_label, double filter_value, const std::string &comparator );
+
6330
+
6332
+
6340 std::vector<uint> filterPrimitivesByData( const std::vector<uint> &UUIDs, const std::string &primitive_data_label, int filter_value, const std::string &comparator );
+
6341
+
6343
+
6351 std::vector<uint> filterPrimitivesByData( const std::vector<uint> &UUIDs, const std::string &primitive_data_label, uint filter_value, const std::string &comparator );
+
6352
+
6354
+
6361 std::vector<uint> filterPrimitivesByData( const std::vector<uint> &UUIDs, const std::string &primitive_data_label, const std::string &filter_value );
+
6362
+
6364
+
6372 std::vector<uint> filterObjectsByData( const std::vector<uint> &objIDs, const std::string &object_data_label, float filter_value, const std::string &comparator );
+
6373
+
6375
+
6383 std::vector<uint> filterObjectsByData( const std::vector<uint> &objIDs, const std::string &object_data_label, double filter_value, const std::string &comparator );
+
6384
+
6386
+
6394 std::vector<uint> filterObjectsByData( const std::vector<uint> &objIDs, const std::string &object_data_label, int filter_value, const std::string &comparator );
+
6395
+
6397
+
6405 std::vector<uint> filterObjectsByData( const std::vector<uint> &objIDs, const std::string &object_data_label, uint filter_value, const std::string &comparator );
+
6406
+
6408
+
6415 std::vector<uint> filterObjectsByData( const std::vector<uint> &objIDs, const std::string &object_data_label, const std::string &filter_value );
+
6416
+
6417};
-
6412
-
6413}
-
6414
-
6415
-
6416
-
6417#endif
+
6418
+
6419}
+
6420
+
6421
+
6422
+
6423#endif
helios::HeliosDataType
HeliosDataType
Data types.
Definition Context.h:41
helios::HELIOS_TYPE_INT3
@ HELIOS_TYPE_INT3
helios::int3 data type
Definition Context.h:59
helios::HELIOS_TYPE_DOUBLE
@ HELIOS_TYPE_DOUBLE
double data type
Definition Context.h:49
@@ -2896,303 +2899,304 @@
helios::OBJECT_TYPE_TILE
@ OBJECT_TYPE_TILE
< Tile
Definition Context.h:130
helios::OBJECT_TYPE_SPHERE
@ OBJECT_TYPE_SPHERE
< Sphere
Definition Context.h:132
helios::Box
Box compound object class.
Definition Context.h:759
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helios::Box::getVolume
float getVolume() const
Get the volume of the box object.
Definition Context.cpp:3914
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helios::Box::setSubdivisionCount
void setSubdivisionCount(const helios::int3 &subdiv)
Set the number of box sub-patch divisions.
Definition Context.cpp:3910
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helios::Box::getSubdivisionCount
helios::int3 getSubdivisionCount() const
Get the number of sub-patch divisions of the box object in each Cartesian direction.
Definition Context.cpp:3906
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helios::Box::getCenter
vec3 getCenter() const
Get the Cartesian coordinates of the center of the box object.
Definition Context.cpp:3890
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helios::Box::getVolume
float getVolume() const
Get the volume of the box object.
Definition Context.cpp:3966
+
helios::Box::setSubdivisionCount
void setSubdivisionCount(const helios::int3 &subdiv)
Set the number of box sub-patch divisions.
Definition Context.cpp:3962
+
helios::Box::getSubdivisionCount
helios::int3 getSubdivisionCount() const
Get the number of sub-patch divisions of the box object in each Cartesian direction.
Definition Context.cpp:3958
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helios::Box::getCenter
vec3 getCenter() const
Get the Cartesian coordinates of the center of the box object.
Definition Context.cpp:3942
helios::Box::~Box
~Box() override=default
Box destructor.
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helios::Box::Box
Box(uint a_OID, const std::vector< uint > &a_UUIDs, const int3 &a_subdiv, const char *a_texturefile, helios::Context *a_context)
Default constructor.
Definition Context.cpp:3851
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helios::Box::getSize
vec3 getSize() const
Get the dimensions of the box object in each Cartesian direction.
Definition Context.cpp:3871
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helios::Box::Box
Box(uint a_OID, const std::vector< uint > &a_UUIDs, const int3 &a_subdiv, const char *a_texturefile, helios::Context *a_context)
Default constructor.
Definition Context.cpp:3903
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helios::Box::getSize
vec3 getSize() const
Get the dimensions of the box object in each Cartesian direction.
Definition Context.cpp:3923
helios::CompoundObject::getObjectDataSize
uint getObjectDataSize(const char *label) const
Get the size/length of object data.
Definition Context_data.cpp:3492
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helios::CompoundObject::rotate
void rotate(float rotation_radians, const char *rotation_axis_xyz_string)
Method to rotate a Compound Object about the x-, y-, or z-axis.
Definition Context.cpp:2362
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helios::CompoundObject::setPrimitiveUUIDs
void setPrimitiveUUIDs(const std::vector< uint > &UUIDs)
Method to set the UUIDs of object child primitives.
Definition Context.cpp:2502
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helios::CompoundObject::getPrimitiveCount
uint getPrimitiveCount() const
Return the number of primitives contained in the object.
Definition Context.cpp:2236
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helios::CompoundObject::overrideTextureColor
void overrideTextureColor()
Override the color in the texture map for all primitives in the Compound Object, in which case the pr...
Definition Context.cpp:2306
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helios::CompoundObject::getObjectID
uint getObjectID() const
Get the unique identifier for the object.
Definition Context.cpp:2228
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helios::CompoundObject::getTextureFile
std::string getTextureFile() const
Method to return the texture map file of an Object.
Definition Context.cpp:2334
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helios::CompoundObject::rotate
void rotate(float rotation_radians, const char *rotation_axis_xyz_string)
Method to rotate a Compound Object about the x-, y-, or z-axis.
Definition Context.cpp:2357
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helios::CompoundObject::setPrimitiveUUIDs
void setPrimitiveUUIDs(const std::vector< uint > &UUIDs)
Method to set the UUIDs of object child primitives.
Definition Context.cpp:2497
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helios::CompoundObject::getPrimitiveCount
uint getPrimitiveCount() const
Return the number of primitives contained in the object.
Definition Context.cpp:2231
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helios::CompoundObject::overrideTextureColor
void overrideTextureColor()
Override the color in the texture map for all primitives in the Compound Object, in which case the pr...
Definition Context.cpp:2301
+
helios::CompoundObject::getObjectID
uint getObjectID() const
Get the unique identifier for the object.
Definition Context.cpp:2223
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helios::CompoundObject::getTextureFile
std::string getTextureFile() const
Method to return the texture map file of an Object.
Definition Context.cpp:2329
helios::CompoundObject::listObjectData
std::vector< std::string > listObjectData() const
Return labels for all object data for this particular object.
Definition Context_data.cpp:3587
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helios::CompoundObject::scale
void scale(const helios::vec3 &scale)
Method to scale a compound object in the x-, y- and z-directions.
Definition Context.cpp:2456
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helios::CompoundObject::deleteChildPrimitive
void deleteChildPrimitive(uint UUID)
Delete a single child member of the object.
Definition Context.cpp:2506
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helios::CompoundObject::hasTexture
bool hasTexture() const
Method to check whether this object has texture data.
Definition Context.cpp:2326
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helios::CompoundObject::setTransformationMatrix
void setTransformationMatrix(float(&T)[16])
Method to set the Affine transformation matrix of a Compound Object.
Definition Context.cpp:2494
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helios::CompoundObject::scaleAboutCenter
void scaleAboutCenter(const helios::vec3 &scale)
Method to scale a compound object in the x-, y- and z-directions.
Definition Context.cpp:2460
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helios::CompoundObject::scaleAboutPoint
void scaleAboutPoint(const helios::vec3 &scale, const helios::vec3 &point)
Method to scale a compound object in the x-, y- and z-directions.
Definition Context.cpp:2464
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helios::CompoundObject::arePrimitivesComplete
bool arePrimitivesComplete() const
Method to query whether all object primitives are in tact.
Definition Context.cpp:2521
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helios::CompoundObject::getArea
float getArea() const
Calculate the total one-sided surface area of the Compound Object.
Definition Context.cpp:2270
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helios::CompoundObject::translate
void translate(const helios::vec3 &shift)
Method to translate/shift a Compound Object.
Definition Context.cpp:2338
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helios::CompoundObject::scale
void scale(const helios::vec3 &scale)
Method to scale a compound object in the x-, y- and z-directions.
Definition Context.cpp:2451
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helios::CompoundObject::deleteChildPrimitive
void deleteChildPrimitive(uint UUID)
Delete a single child member of the object.
Definition Context.cpp:2501
+
helios::CompoundObject::hasTexture
bool hasTexture() const
Method to check whether this object has texture data.
Definition Context.cpp:2321
+
helios::CompoundObject::setTransformationMatrix
void setTransformationMatrix(float(&T)[16])
Method to set the Affine transformation matrix of a Compound Object.
Definition Context.cpp:2489
+
helios::CompoundObject::scaleAboutCenter
void scaleAboutCenter(const helios::vec3 &scale)
Method to scale a compound object in the x-, y- and z-directions.
Definition Context.cpp:2455
+
helios::CompoundObject::scaleAboutPoint
void scaleAboutPoint(const helios::vec3 &scale, const helios::vec3 &point)
Method to scale a compound object in the x-, y- and z-directions.
Definition Context.cpp:2459
+
helios::CompoundObject::arePrimitivesComplete
bool arePrimitivesComplete() const
Method to query whether all object primitives are in tact.
Definition Context.cpp:2516
+
helios::CompoundObject::getArea
float getArea() const
Calculate the total one-sided surface area of the Compound Object.
Definition Context.cpp:2265
+
helios::CompoundObject::translate
void translate(const helios::vec3 &shift)
Method to translate/shift a Compound Object.
Definition Context.cpp:2333
helios::CompoundObject::doesObjectDataExist
bool doesObjectDataExist(const char *label) const
Check if object data 'label' exists.
Definition Context_data.cpp:3577
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helios::CompoundObject::getObjectType
helios::ObjectType getObjectType() const
Get an enumeration specifying the type of the object.
Definition Context.cpp:2232
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helios::CompoundObject::getPrimitiveUUIDs
std::vector< uint > getPrimitiveUUIDs() const
Get the UUIDs for all primitives contained in the object.
Definition Context.cpp:2241
+
helios::CompoundObject::getObjectType
helios::ObjectType getObjectType() const
Get an enumeration specifying the type of the object.
Definition Context.cpp:2227
+
helios::CompoundObject::getPrimitiveUUIDs
std::vector< uint > getPrimitiveUUIDs() const
Get the UUIDs for all primitives contained in the object.
Definition Context.cpp:2236
helios::CompoundObject::getObjectDataType
HeliosDataType getObjectDataType(const char *label) const
Get the Helios data type of object data.
Definition Context_data.cpp:3482
helios::CompoundObject::clearObjectData
void clearObjectData(const char *label)
Clear the object data for this object.
Definition Context_data.cpp:3530
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helios::CompoundObject::getTransformationMatrix
void getTransformationMatrix(float(&T)[16]) const
Method to return the Affine transformation matrix of a Compound Object.
Definition Context.cpp:2488
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helios::CompoundObject::getTransformationMatrix
void getTransformationMatrix(float(&T)[16]) const
Method to return the Affine transformation matrix of a Compound Object.
Definition Context.cpp:2483
helios::CompoundObject::getObjectData
void getObjectData(const char *label, int &data) const
Get data associated with a object element (integer scalar)
Definition Context_data.cpp:3174
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helios::CompoundObject::setColor
void setColor(const helios::RGBcolor &color)
Method to set the diffuse color for all primitives in the Compound Object.
Definition Context.cpp:2286
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helios::CompoundObject::setColor
void setColor(const helios::RGBcolor &color)
Method to set the diffuse color for all primitives in the Compound Object.
Definition Context.cpp:2281
helios::CompoundObject::setObjectData
void setObjectData(const char *label, const int &data)
Add data value (int) associated with a object element.
Definition Context_data.cpp:3012
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helios::CompoundObject::useTextureColor
void useTextureColor()
For all primitives in the Compound Object, use the texture map to color the primitives rather than th...
Definition Context.cpp:2316
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helios::CompoundObject::doesObjectContainPrimitive
bool doesObjectContainPrimitive(uint UUID)
Check whether a primitive is a member of the object based on its UUID.
Definition Context.cpp:2247
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helios::CompoundObject::getObjectCenter
helios::vec3 getObjectCenter() const
Calculate the Cartesian (x,y,z) point of the center of a bounding box for the Compound Object.
Definition Context.cpp:2253
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helios::CompoundObject::useTextureColor
void useTextureColor()
For all primitives in the Compound Object, use the texture map to color the primitives rather than th...
Definition Context.cpp:2311
+
helios::CompoundObject::doesObjectContainPrimitive
bool doesObjectContainPrimitive(uint UUID)
Check whether a primitive is a member of the object based on its UUID.
Definition Context.cpp:2242
+
helios::CompoundObject::getObjectCenter
helios::vec3 getObjectCenter() const
Calculate the Cartesian (x,y,z) point of the center of a bounding box for the Compound Object.
Definition Context.cpp:2248
helios::Cone
Cone compound object class.
Definition Context.h:847
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helios::Cone::getSubdivisionCount
uint getSubdivisionCount() const
Get the number of sub-triangle divisions of the cone object.
Definition Context.cpp:4081
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helios::Cone::Cone
Cone(uint a_OID, const std::vector< uint > &a_UUIDs, const vec3 &a_node0, const vec3 &a_node1, float a_radius0, float a_radius1, uint a_subdiv, const char *a_texturefile, helios::Context *a_context)
Default constructor.
Definition Context.cpp:4017
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helios::Cone::getNodeRadius
float getNodeRadius(int node_index) const
Get the radius of a cone object node.
Definition Context.cpp:4073
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helios::Cone::setSubdivisionCount
void setSubdivisionCount(uint subdiv)
Set the number of radial sub-triangle divisions.
Definition Context.cpp:4085
-
helios::Cone::getNodeCoordinate
helios::vec3 getNodeCoordinate(int node_index) const
Get the Cartesian coordinates of a cone object node.
Definition Context.cpp:4054
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helios::Cone::getAxisUnitVector
helios::vec3 getAxisUnitVector() const
Get a unit vector pointing in the direction of the cone central axis.
Definition Context.cpp:4089
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helios::Cone::getNodeCoordinates
std::vector< helios::vec3 > getNodeCoordinates() const
Get the Cartesian coordinates of each of the cone object nodes.
Definition Context.cpp:4040
-
helios::Cone::scaleLength
void scaleLength(float S)
Method to scale the length of the cone.
Definition Context.cpp:4122
+
helios::Cone::getSubdivisionCount
uint getSubdivisionCount() const
Get the number of sub-triangle divisions of the cone object.
Definition Context.cpp:4133
+
helios::Cone::Cone
Cone(uint a_OID, const std::vector< uint > &a_UUIDs, const vec3 &a_node0, const vec3 &a_node1, float a_radius0, float a_radius1, uint a_subdiv, const char *a_texturefile, helios::Context *a_context)
Default constructor.
Definition Context.cpp:4069
+
helios::Cone::getNodeRadius
float getNodeRadius(int node_index) const
Get the radius of a cone object node.
Definition Context.cpp:4125
+
helios::Cone::setSubdivisionCount
void setSubdivisionCount(uint subdiv)
Set the number of radial sub-triangle divisions.
Definition Context.cpp:4137
+
helios::Cone::getNodeCoordinate
helios::vec3 getNodeCoordinate(int node_index) const
Get the Cartesian coordinates of a cone object node.
Definition Context.cpp:4106
+
helios::Cone::getAxisUnitVector
helios::vec3 getAxisUnitVector() const
Get a unit vector pointing in the direction of the cone central axis.
Definition Context.cpp:4141
+
helios::Cone::getNodeCoordinates
std::vector< helios::vec3 > getNodeCoordinates() const
Get the Cartesian coordinates of each of the cone object nodes.
Definition Context.cpp:4092
+
helios::Cone::scaleLength
void scaleLength(float S)
Method to scale the length of the cone.
Definition Context.cpp:4174
helios::Cone::~Cone
~Cone() override=default
Cone destructor.
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helios::Cone::scaleGirth
void scaleGirth(float S)
Method to scale the girth of the cone.
Definition Context.cpp:4171
-
helios::Cone::getLength
float getLength() const
Get the length of the cone along the axial direction.
Definition Context.cpp:4107
-
helios::Cone::getNodeRadii
std::vector< float > getNodeRadii() const
Get the radius at each of the cone object nodes.
Definition Context.cpp:4069
-
helios::Cone::getVolume
float getVolume() const
Get the volume of the cone object.
Definition Context.cpp:4212
+
helios::Cone::scaleGirth
void scaleGirth(float S)
Method to scale the girth of the cone.
Definition Context.cpp:4223
+
helios::Cone::getLength
float getLength() const
Get the length of the cone along the axial direction.
Definition Context.cpp:4159
+
helios::Cone::getNodeRadii
std::vector< float > getNodeRadii() const
Get the radius at each of the cone object nodes.
Definition Context.cpp:4121
+
helios::Cone::getVolume
float getVolume() const
Get the volume of the cone object.
Definition Context.cpp:4264
helios::Context
Stores the state associated with simulation.
Definition Context.h:1882
helios::Context::copyPrimitiveData
void copyPrimitiveData(uint sourceUUID, uint destinationUUID)
copy all primitive data from one primitive to another
Definition Context_data.cpp:1192
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helios::Context::getTileObjectTextureUV
std::vector< helios::vec2 > getTileObjectTextureUV(uint ObjID) const
get the texture UV coordinates of a tile object from the context
Definition Context.cpp:8009
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helios::Context::setTileObjectSubdivisionCount
void setTileObjectSubdivisionCount(const std::vector< uint > &ObjectIDs, const int2 &new_subdiv)
Change the subdivision count of a tile object.
Definition Context.cpp:2967
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helios::Context::setPrimitiveColor
void setPrimitiveColor(uint UUID, const helios::RGBcolor &color)
Method to set the diffuse color of a Primitive.
Definition Context.cpp:7016
-
helios::Context::getPrimitiveTransformationMatrix
void getPrimitiveTransformationMatrix(uint UUID, float(&T)[16]) const
Method to return the Affine transformation matrix of a Primitive.
Definition Context.cpp:6985
-
helios::Context::scaleTubeLength
void scaleTubeLength(uint ObjID, float scale_factor)
Scale the length of a tube object by an arbitrary factor for all tube nodes.
Definition Context.cpp:8085
-
helios::Context::isObjectHidden
bool isObjectHidden(uint ObjID) const
Query if an object is hidden.
Definition Context.cpp:7790
+
helios::Context::getTileObjectTextureUV
std::vector< helios::vec2 > getTileObjectTextureUV(uint ObjID) const
get the texture UV coordinates of a tile object from the context
Definition Context.cpp:8076
+
helios::Context::setTileObjectSubdivisionCount
void setTileObjectSubdivisionCount(const std::vector< uint > &ObjectIDs, const int2 &new_subdiv)
Change the subdivision count of a tile object.
Definition Context.cpp:2962
+
helios::Context::setPrimitiveColor
void setPrimitiveColor(uint UUID, const helios::RGBcolor &color)
Method to set the diffuse color of a Primitive.
Definition Context.cpp:7083
+
helios::Context::getPrimitiveTransformationMatrix
void getPrimitiveTransformationMatrix(uint UUID, float(&T)[16]) const
Method to return the Affine transformation matrix of a Primitive.
Definition Context.cpp:7052
+
helios::Context::scaleTubeLength
void scaleTubeLength(uint ObjID, float scale_factor)
Scale the length of a tube object by an arbitrary factor for all tube nodes.
Definition Context.cpp:8152
+
helios::Context::isObjectHidden
bool isObjectHidden(uint ObjID) const
Query if an object is hidden.
Definition Context.cpp:7857
helios::Context::scalePrimitiveData
void scalePrimitiveData(const std::vector< uint > &UUIDs, const std::string &label, float scaling_factor)
Multiply primitive data values by a constant scaling factor for a subset of primitives.
Definition Context_data.cpp:1747
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helios::Context::scaleObjectAboutPoint
void scaleObjectAboutPoint(uint ObjID, const helios::vec3 &scalefact, const helios::vec3 &point)
Method to scale a compound object in the x-, y- and z-directions.
Definition Context.cpp:2882
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helios::Context::getTubeObjectSegmentVolume
float getTubeObjectSegmentVolume(uint ObjID, uint segment_index) const
get the volume of a segment within a Tube object
Definition Context.cpp:8053
+
helios::Context::scaleObjectAboutPoint
void scaleObjectAboutPoint(uint ObjID, const helios::vec3 &scalefact, const helios::vec3 &point)
Method to scale a compound object in the x-, y- and z-directions.
Definition Context.cpp:2877
+
helios::Context::getTubeObjectSegmentVolume
float getTubeObjectSegmentVolume(uint ObjID, uint segment_index) const
get the volume of a segment within a Tube object
Definition Context.cpp:8120
helios::Context::loadPLY
std::vector< uint > loadPLY(const char *filename, bool silent=false)
Load geometry contained in a Stanford polygon file (.ply). Model will be placed at the origin with no...
Definition Context_fileIO.cpp:3370
-
helios::Context::getPrimitiveColor
helios::RGBcolor getPrimitiveColor(uint UUID) const
Method to return the diffuse color of a Primitive.
Definition Context.cpp:7004
+
helios::Context::getPrimitiveColor
helios::RGBcolor getPrimitiveColor(uint UUID) const
Method to return the diffuse color of a Primitive.
Definition Context.cpp:7071
helios::Context::loadXML
std::vector< uint > loadXML(const char *filename, bool quiet=false)
Load inputs specified in an XML file.
Definition Context_fileIO.cpp:1217
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helios::Context::copyObject
uint copyObject(uint ObjID)
Make a copy of a Compound Objects from the context.
Definition Context.cpp:2627
-
helios::Context::randn
float randn()
Draw a random number from a normal distribution with mean = 0, stddev = 1.
Definition Context.cpp:1199
-
helios::Context::getDiskObjectPointer
Disk * getDiskObjectPointer(uint ObjID) const
Get a pointer to a Disk Compound Object.
Definition Context.cpp:3932
-
helios::Context::overrideObjectTextureColor
void overrideObjectTextureColor(uint ObjID)
Override the color in the texture map for all primitives in the Compound Object, in which case the pr...
Definition Context.cpp:7855
-
helios::Context::getUniquePrimitiveParentObjectIDs
std::vector< uint > getUniquePrimitiveParentObjectIDs(const std::vector< uint > &UUIDs) const
Method to return unique parent object IDs for a vector of primitive UUIDs.
Definition Context.cpp:6899
-
helios::Context::translatePrimitive
void translatePrimitive(uint UUID, const vec3 &shift)
Translate a primitive using its UUID.
Definition Context.cpp:1401
-
helios::Context::getObjectBoundingBox
void getObjectBoundingBox(uint ObjID, vec3 &min_corner, vec3 &max_corner) const
Get the axis-aligned bounding box for a single object.
Definition Context.cpp:7875
-
helios::Context::getPrimitiveArea
float getPrimitiveArea(uint UUID) const
Method to return the surface area of a Primitive.
Definition Context.cpp:6930
+
helios::Context::copyObject
uint copyObject(uint ObjID)
Make a copy of a Compound Objects from the context.
Definition Context.cpp:2622
+
helios::Context::randn
float randn()
Draw a random number from a normal distribution with mean = 0, stddev = 1.
Definition Context.cpp:1194
+
helios::Context::getDiskObjectPointer
Disk * getDiskObjectPointer(uint ObjID) const
Get a pointer to a Disk Compound Object.
Definition Context.cpp:3984
+
helios::Context::overrideObjectTextureColor
void overrideObjectTextureColor(uint ObjID)
Override the color in the texture map for all primitives in the Compound Object, in which case the pr...
Definition Context.cpp:7922
+
helios::Context::getUniquePrimitiveParentObjectIDs
std::vector< uint > getUniquePrimitiveParentObjectIDs(const std::vector< uint > &UUIDs) const
Method to return unique parent object IDs for a vector of primitive UUIDs.
Definition Context.cpp:6966
+
helios::Context::translatePrimitive
void translatePrimitive(uint UUID, const vec3 &shift)
Translate a primitive using its UUID.
Definition Context.cpp:1396
+
helios::Context::getObjectBoundingBox
void getObjectBoundingBox(uint ObjID, vec3 &min_corner, vec3 &max_corner) const
Get the axis-aligned bounding box for a single object.
Definition Context.cpp:7942
+
helios::Context::getPrimitiveArea
float getPrimitiveArea(uint UUID) const
Method to return the surface area of a Primitive.
Definition Context.cpp:6997
helios::Context::loadTabularTimeseriesData
void loadTabularTimeseriesData(const std::string &data_file, const std::vector< std::string > &column_labels, const std::string &delimiter, const std::string &date_string_format="YYYYMMDD", uint headerlines=0)
Load tabular weather data from text file into timeseries.
Definition Context_fileIO.cpp:4544
-
helios::Context::getBoxObjectPointer
Box * getBoxObjectPointer(uint ObjID) const
Get a pointer to a Box Compound Object.
Definition Context.cpp:3864
-
helios::Context::cleanDeletedUUIDs
void cleanDeletedUUIDs(std::vector< uint > &UUIDs) const
Delete UUIDs from vector if primitives no longer exist (1D vector)
Definition Context.cpp:1788
-
helios::Context::getConeObjectSubdivisionCount
uint getConeObjectSubdivisionCount(uint ObjID) const
get the subdivision count of a Cone object from the context
Definition Context.cpp:8127
-
helios::Context::getDiskObjectCenter
helios::vec3 getDiskObjectCenter(uint ObjID) const
get the center of a Disk object from the context
Definition Context.cpp:8115
+
helios::Context::getBoxObjectPointer
Box * getBoxObjectPointer(uint ObjID) const
Get a pointer to a Box Compound Object.
Definition Context.cpp:3916
+
helios::Context::cleanDeletedUUIDs
void cleanDeletedUUIDs(std::vector< uint > &UUIDs) const
Delete UUIDs from vector if primitives no longer exist (1D vector)
Definition Context.cpp:1783
+
helios::Context::getConeObjectSubdivisionCount
uint getConeObjectSubdivisionCount(uint ObjID) const
get the subdivision count of a Cone object from the context
Definition Context.cpp:8194
+
helios::Context::getDiskObjectCenter
helios::vec3 getDiskObjectCenter(uint ObjID) const
get the center of a Disk object from the context
Definition Context.cpp:8182
helios::Context::getPrimitiveData
void getPrimitiveData(uint UUID, const char *label, int &data) const
Get data associated with a primitive element.
Definition Context_data.cpp:1001
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helios::Context::getJulianDate
int getJulianDate() const
Get simulation date by Julian day.
Definition Context.cpp:1135
-
helios::Context::deletePrimitive
void deletePrimitive(uint UUID)
Delete a single primitive from the context.
Definition Context.cpp:1531
-
helios::Context::getBoxObjectSubdivisionCount
helios::int3 getBoxObjectSubdivisionCount(uint ObjID) const
get the subdivision count of a Box object from the context
Definition Context.cpp:8107
-
helios::Context::getTubeObjectSubdivisionCount
uint getTubeObjectSubdivisionCount(uint ObjectID) const
get the subdivision count of a Tube object from the context
Definition Context.cpp:8033
+
helios::Context::getJulianDate
int getJulianDate() const
Get simulation date by Julian day.
Definition Context.cpp:1130
+
helios::Context::deletePrimitive
void deletePrimitive(uint UUID)
Delete a single primitive from the context.
Definition Context.cpp:1526
+
helios::Context::getBoxObjectSubdivisionCount
helios::int3 getBoxObjectSubdivisionCount(uint ObjID) const
get the subdivision count of a Box object from the context
Definition Context.cpp:8174
+
helios::Context::getTubeObjectSubdivisionCount
uint getTubeObjectSubdivisionCount(uint ObjectID) const
get the subdivision count of a Tube object from the context
Definition Context.cpp:8100
helios::Context::doesObjectDataExist
bool doesObjectDataExist(uint objID, const char *label) const
Check if primitive data 'label' exists.
Definition Context_data.cpp:2908
-
helios::Context::~Context
~Context()
Context destructor.
Definition Context.cpp:6847
-
helios::Context::getPrimitiveParentObjectID
uint getPrimitiveParentObjectID(uint UUID) const
Method to return the ID of the parent object the primitive belongs to (default is object 0)
Definition Context.cpp:6894
-
helios::Context::getAllObjectIDs
std::vector< uint > getAllObjectIDs() const
Get the IDs for all Compound Objects in the Context.
Definition Context.cpp:2574
-
helios::Context::getConeObjectPointer
Cone * getConeObjectPointer(uint ObjID) const
Get a pointer to a Cone Compound Object.
Definition Context.cpp:4033
+
helios::Context::~Context
~Context()
Context destructor.
Definition Context.cpp:6914
+
helios::Context::getPrimitiveParentObjectID
uint getPrimitiveParentObjectID(uint UUID) const
Method to return the ID of the parent object the primitive belongs to (default is object 0)
Definition Context.cpp:6961
+
helios::Context::getAllObjectIDs
std::vector< uint > getAllObjectIDs() const
Get the IDs for all Compound Objects in the Context.
Definition Context.cpp:2569
+
helios::Context::getConeObjectPointer
Cone * getConeObjectPointer(uint ObjID) const
Get a pointer to a Cone Compound Object.
Definition Context.cpp:4085
helios::Context::seedRandomGenerator
void seedRandomGenerator(uint seed)
Set seed for random generator.
Definition Context.cpp:43
helios::Context::getObjectData
void getObjectData(uint objID, const char *label, int &data) const
Get data associated with a compound object.
Definition Context_data.cpp:2740
-
helios::Context::printPrimitiveInfo
void printPrimitiveInfo(uint UUID) const
Prints primitive properties to console (useful for debugging purposes)
Definition Context.cpp:7102
-
helios::Context::markGeometryClean
void markGeometryClean()
Mark the Context geometry as "clean", meaning that the geometry has not been modified since last set ...
Definition Context.cpp:152
-
helios::Context::getDomainBoundingSphere
void getDomainBoundingSphere(helios::vec3 &center, float &radius) const
Get the center and radius of a sphere that bounds all primitives in the domain.
Definition Context.cpp:2101
-
helios::Context::rotateObject
void rotateObject(uint ObjID, float rotation_radians, const char *rotation_axis_xyz)
Rotate a single compound object about the x, y, or z axis.
Definition Context.cpp:2832
-
helios::Context::getObjectPointer
CompoundObject * getObjectPointer(uint ObjID) const
Get a pointer to a Compound Object.
Definition Context.cpp:2559
-
helios::Context::getPatchCenter
helios::vec3 getPatchCenter(uint UUID) const
Get the Cartesian (x,y,z) center position of a patch element.
Definition Context.cpp:1688
+
helios::Context::printPrimitiveInfo
void printPrimitiveInfo(uint UUID) const
Prints primitive properties to console (useful for debugging purposes)
Definition Context.cpp:7169
+
helios::Context::markGeometryClean
void markGeometryClean()
Mark the Context geometry as "clean", meaning that the geometry has not been modified since last set ...
Definition Context.cpp:147
+
helios::Context::getDomainBoundingSphere
void getDomainBoundingSphere(helios::vec3 &center, float &radius) const
Get the center and radius of a sphere that bounds all primitives in the domain.
Definition Context.cpp:2096
+
helios::Context::rotateObject
void rotateObject(uint ObjID, float rotation_radians, const char *rotation_axis_xyz)
Rotate a single compound object about the x, y, or z axis.
Definition Context.cpp:2827
+
helios::Context::getObjectPointer
CompoundObject * getObjectPointer(uint ObjID) const
Get a pointer to a Compound Object.
Definition Context.cpp:2554
+
helios::Context::getPatchCenter
helios::vec3 getPatchCenter(uint UUID) const
Get the Cartesian (x,y,z) center position of a patch element.
Definition Context.cpp:1683
helios::Context::filterPrimitivesByData
std::vector< uint > filterPrimitivesByData(const std::vector< uint > &UUIDs, const std::string &primitive_data_label, float filter_value, const std::string &comparator)
Filter a set of primitives based on their primitive data and a condition and float value.
Definition Context_data.cpp:2224
-
helios::Context::getTileObjectSize
helios::vec2 getTileObjectSize(uint ObjID) const
get the size of a tile object from the context
Definition Context.cpp:7997
-
helios::Context::getObjectPrimitiveCount
uint getObjectPrimitiveCount(uint ObjID) const
Method to return the number of primitives contained in the object.
Definition Context.cpp:7801
+
helios::Context::getTileObjectSize
helios::vec2 getTileObjectSize(uint ObjID) const
get the size of a tile object from the context
Definition Context.cpp:8064
+
helios::Context::getObjectPrimitiveCount
uint getObjectPrimitiveCount(uint ObjID) const
Method to return the number of primitives contained in the object.
Definition Context.cpp:7868
helios::Context::getLoadedXMLFiles
std::vector< std::string > getLoadedXMLFiles()
Get names of XML files that are currently loaded.
Definition Context_fileIO.cpp:2399
helios::Context::getPrimitiveDataSize
uint getPrimitiveDataSize(uint UUID, const char *label) const
Get the size/length of primitive data.
Definition Context_data.cpp:1162
-
helios::Context::randu
float randu()
Draw a random number from a uniform distribution between 0 and 1.
Definition Context.cpp:1173
+
helios::Context::randu
float randu()
Draw a random number from a uniform distribution between 0 and 1.
Definition Context.cpp:1168
helios::Context::calculatePrimitiveDataSum
void calculatePrimitiveDataSum(const std::vector< uint > &UUIDs, const std::string &label, float &sum) const
Calculate sum of primitive data values (float) for a subset of primitives.
Definition Context_data.cpp:1532
-
helios::Context::getPrimitiveColorRGBA
helios::RGBAcolor getPrimitiveColorRGBA(uint UUID) const
Method to return the diffuse color of a Primitive with transparency.
Definition Context.cpp:7012
-
helios::Context::getBoxObjectSize
helios::vec3 getBoxObjectSize(uint ObjID) const
get the size of a Box object from the context
Definition Context.cpp:8103
-
helios::Context::getSphereObjectCenter
helios::vec3 getSphereObjectCenter(uint ObjID) const
get the center of a Sphere object from the context
Definition Context.cpp:8017
+
helios::Context::getPrimitiveColorRGBA
helios::RGBAcolor getPrimitiveColorRGBA(uint UUID) const
Method to return the diffuse color of a Primitive with transparency.
Definition Context.cpp:7079
+
helios::Context::getBoxObjectSize
helios::vec3 getBoxObjectSize(uint ObjID) const
get the size of a Box object from the context
Definition Context.cpp:8170
+
helios::Context::getSphereObjectCenter
helios::vec3 getSphereObjectCenter(uint ObjID) const
get the center of a Sphere object from the context
Definition Context.cpp:8084
helios::Context::incrementPrimitiveData
void incrementPrimitiveData(const std::vector< uint > &UUIDs, const char *label, int increment)
Increase value of primitive data (int) by some value.
Definition Context_data.cpp:1805
-
helios::Context::getObjectCenter
helios::vec3 getObjectCenter(uint ObjID) const
Method to return the Cartesian (x,y,z) point of the center of a bounding box for the object.
Definition Context.cpp:7805
-
helios::Context::getPrimitiveTextureFile
std::string getPrimitiveTextureFile(uint UUID) const
Get the path to texture map file for primitive. If primitive does not have a texture map,...
Definition Context.cpp:7036
-
helios::Context::getObjectCount
uint getObjectCount() const
Get the total number of objects that have been created in the Context.
Definition Context.cpp:2566
-
helios::Context::getConeObjectNode
helios::vec3 getConeObjectNode(uint ObjID, int number) const
get a node of a Cone object from the context
Definition Context.cpp:8139
-
helios::Context::getTubeObjectVolume
float getTubeObjectVolume(uint ObjID) const
get the volume of a Tube object from the context
Definition Context.cpp:8049
-
helios::Context::getPrimitiveTextureUV
std::vector< vec2 > getPrimitiveTextureUV(uint UUID) const
Get u-v texture coordinates at primitive vertices.
Definition Context.cpp:7052
-
helios::Context::cropDomainZ
void cropDomainZ(const vec2 &zbounds)
Crop the domain in the z-direction such that all primitives lie within some specified z interval.
Definition Context.cpp:2175
-
helios::Context::getPolymeshObjectPointer
Polymesh * getPolymeshObjectPointer(uint ObjID) const
Get a pointer to a Polygon Mesh Compound Object.
Definition Context.cpp:3991
-
helios::Context::cropDomainX
void cropDomainX(const vec2 &xbounds)
Crop the domain in the x-direction such that all primitives lie within some specified x interval.
Definition Context.cpp:2129
-
helios::Context::getSphereObjectRadius
helios::vec3 getSphereObjectRadius(uint ObjID) const
get the radius of a Sphere object from the context
Definition Context.cpp:8021
-
helios::Context::setDate
void setDate(int day, int month, int year)
Set simulation date by day, month, year.
Definition Context.cpp:1062
+
helios::Context::getObjectCenter
helios::vec3 getObjectCenter(uint ObjID) const
Method to return the Cartesian (x,y,z) point of the center of a bounding box for the object.
Definition Context.cpp:7872
+
helios::Context::getPrimitiveTextureFile
std::string getPrimitiveTextureFile(uint UUID) const
Get the path to texture map file for primitive. If primitive does not have a texture map,...
Definition Context.cpp:7103
+
helios::Context::getObjectCount
uint getObjectCount() const
Get the total number of objects that have been created in the Context.
Definition Context.cpp:2561
+
helios::Context::getConeObjectNode
helios::vec3 getConeObjectNode(uint ObjID, int number) const
get a node of a Cone object from the context
Definition Context.cpp:8206
+
helios::Context::getTubeObjectVolume
float getTubeObjectVolume(uint ObjID) const
get the volume of a Tube object from the context
Definition Context.cpp:8116
+
helios::Context::getPrimitiveTextureUV
std::vector< vec2 > getPrimitiveTextureUV(uint UUID) const
Get u-v texture coordinates at primitive vertices.
Definition Context.cpp:7119
+
helios::Context::cropDomainZ
void cropDomainZ(const vec2 &zbounds)
Crop the domain in the z-direction such that all primitives lie within some specified z interval.
Definition Context.cpp:2170
+
helios::Context::getPolymeshObjectPointer
Polymesh * getPolymeshObjectPointer(uint ObjID) const
Get a pointer to a Polygon Mesh Compound Object.
Definition Context.cpp:4043
+
helios::Context::cropDomainX
void cropDomainX(const vec2 &xbounds)
Crop the domain in the x-direction such that all primitives lie within some specified x interval.
Definition Context.cpp:2124
+
helios::Context::getSphereObjectRadius
helios::vec3 getSphereObjectRadius(uint ObjID) const
get the radius of a Sphere object from the context
Definition Context.cpp:8088
+
helios::Context::setDate
void setDate(int day, int month, int year)
Set simulation date by day, month, year.
Definition Context.cpp:1057
helios::Context::renamePrimitiveData
void renamePrimitiveData(uint UUID, const char *old_label, const char *new_label)
Rename primitive data for a primitive.
Definition Context_data.cpp:1216
-
helios::Context::setPrimitiveParentObjectID
void setPrimitiveParentObjectID(uint UUID, uint objID)
Method to set the ID of the parent object the primitive belongs to (default is object 0)
Definition Context.cpp:6865
-
helios::Context::primitiveTextureHasTransparencyChannel
bool primitiveTextureHasTransparencyChannel(uint UUID) const
Check if primitive texture map has a transparency channel.
Definition Context.cpp:7056
-
helios::Context::rotatePrimitive
void rotatePrimitive(uint UUID, float rot, const char *axis)
Rotate a primitive about the x, y, or z axis using its UUID.
Definition Context.cpp:1415
-
helios::Context::usePrimitiveTextureColor
void usePrimitiveTextureColor(uint UUID)
Use the texture map to color the primitive rather than the constant RGB color. This is function rever...
Definition Context.cpp:7084
-
helios::Context::doesObjectContainPrimitive
bool doesObjectContainPrimitive(uint ObjID, uint UUID)
Method to check if an Object contains a Primitive.
Definition Context.cpp:7851
+
helios::Context::setPrimitiveParentObjectID
void setPrimitiveParentObjectID(uint UUID, uint objID)
Method to set the ID of the parent object the primitive belongs to (default is object 0)
Definition Context.cpp:6932
+
helios::Context::primitiveTextureHasTransparencyChannel
bool primitiveTextureHasTransparencyChannel(uint UUID) const
Check if primitive texture map has a transparency channel.
Definition Context.cpp:7123
+
helios::Context::rotatePrimitive
void rotatePrimitive(uint UUID, float rot, const char *axis)
Rotate a primitive about the x, y, or z axis using its UUID.
Definition Context.cpp:1410
+
helios::Context::usePrimitiveTextureColor
void usePrimitiveTextureColor(uint UUID)
Use the texture map to color the primitive rather than the constant RGB color. This is function rever...
Definition Context.cpp:7151
+
helios::Context::doesObjectContainPrimitive
bool doesObjectContainPrimitive(uint ObjID, uint UUID)
Method to check if an Object contains a Primitive.
Definition Context.cpp:7918
helios::Context::duplicateObjectData
void duplicateObjectData(uint objID, const char *old_label, const char *new_label)
Duplicate/copy existing object data.
Definition Context_data.cpp:2939
-
helios::Context::getMonthString
const char * getMonthString() const
Get a string corresponding to the month of the simulation date.
Definition Context.cpp:1106
-
helios::Context::filterObjectsByData
std::vector< uint > filterObjectsByData(const std::vector< uint > &ObjIDs, const char *object_data, float threshold, const char *comparator) const
Get a vector of object IDs that meet filtering criteria based on object data.
Definition Context.cpp:2735
-
helios::Context::setObjectColor
void setObjectColor(uint ObjID, const helios::RGBcolor &color)
Method to set the diffuse color of an Object.
Definition Context.cpp:7831
-
helios::Context::setTriangleVertices
void setTriangleVertices(uint UUID, const helios::vec3 &vertex0, const helios::vec3 &vertex1, const helios::vec3 &vertex2)
//! Manually set the Triangle vertices
Definition Context.cpp:1717
-
helios::Context::appendTubeSegment
void appendTubeSegment(uint ObjID, const helios::vec3 &node_position, float radius, const RGBcolor &color)
Append a tube segment to an existing tube object.
Definition Context.cpp:8057
-
helios::Context::isGeometryDirty
bool isGeometryDirty() const
Query whether the Context geometry is "dirty", meaning has the geometry been modified since last set ...
Definition Context.cpp:160
-
helios::Context::getTileObjectNormal
helios::vec3 getTileObjectNormal(uint ObjID) const
get the normal of a tile object from the context
Definition Context.cpp:8005
+
helios::Context::getMonthString
const char * getMonthString() const
Get a string corresponding to the month of the simulation date.
Definition Context.cpp:1101
+
helios::Context::filterObjectsByData
std::vector< uint > filterObjectsByData(const std::vector< uint > &ObjIDs, const char *object_data, float threshold, const char *comparator) const
Get a vector of object IDs that meet filtering criteria based on object data.
Definition Context.cpp:2730
+
helios::Context::setObjectColor
void setObjectColor(uint ObjID, const helios::RGBcolor &color)
Method to set the diffuse color of an Object.
Definition Context.cpp:7898
+
helios::Context::setTriangleVertices
void setTriangleVertices(uint UUID, const helios::vec3 &vertex0, const helios::vec3 &vertex1, const helios::vec3 &vertex2)
//! Manually set the Triangle vertices
Definition Context.cpp:1712
+
helios::Context::appendTubeSegment
void appendTubeSegment(uint ObjID, const helios::vec3 &node_position, float radius, const RGBcolor &color)
Append a tube segment to an existing tube object.
Definition Context.cpp:8124
+
helios::Context::isGeometryDirty
bool isGeometryDirty() const
Query whether the Context geometry is "dirty", meaning has the geometry been modified since last set ...
Definition Context.cpp:155
+
helios::Context::getTileObjectNormal
helios::vec3 getTileObjectNormal(uint ObjID) const
get the normal of a tile object from the context
Definition Context.cpp:8072
helios::Context::Context
Context()
Context default constructor.
Definition Context.cpp:20
-
helios::Context::doesGlobalDataExist
bool doesGlobalDataExist(const char *label) const
Check if global data 'label' exists.
Definition Context_data.cpp:4447
+
helios::Context::doesGlobalDataExist
bool doesGlobalDataExist(const char *label) const
Check if global data 'label' exists.
Definition Context_data.cpp:4458
helios::Context::aggregatePrimitiveDataProduct
void aggregatePrimitiveDataProduct(const std::vector< uint > &UUIDs, const std::vector< std::string > &primitive_data_labels, const std::string &result_primitive_data_label)
Multiply primitive data values for each primitive together and store result in new primitive data.
Definition Context_data.cpp:2025
-
helios::Context::getPrimitiveType
PrimitiveType getPrimitiveType(uint UUID) const
Method to get the Primitive type.
Definition Context.cpp:6861
-
helios::Context::getVoxelSize
helios::vec3 getVoxelSize(uint UUID) const
Get the size of a voxel element.
Definition Context.cpp:1736
-
helios::Context::getTubeObjectNodeRadii
std::vector< float > getTubeObjectNodeRadii(uint ObjID) const
get the node radii of a Tube object from the context
Definition Context.cpp:8041
+
helios::Context::getPrimitiveType
PrimitiveType getPrimitiveType(uint UUID) const
Method to get the Primitive type.
Definition Context.cpp:6928
+
helios::Context::getVoxelSize
helios::vec3 getVoxelSize(uint UUID) const
Get the size of a voxel element.
Definition Context.cpp:1731
+
helios::Context::getTubeObjectNodeRadii
std::vector< float > getTubeObjectNodeRadii(uint ObjID) const
get the node radii of a Tube object from the context
Definition Context.cpp:8108
helios::Context::setObjectData
void setObjectData(uint objID, const char *label, const int &data)
Add data value (int) associated with a compound object.
Definition Context_data.cpp:2392
helios::Context::clearObjectData
void clearObjectData(uint objID, const char *label)
Clear primitive data for a single primitive based on its objID.
Definition Context_data.cpp:2992
-
helios::Context::getPrimitiveSolidFraction
float getPrimitiveSolidFraction(uint UUID) const
Get fraction of primitive surface area that is non-transparent.
Definition Context.cpp:7098
-
helios::Context::translateObject
void translateObject(uint ObjID, const vec3 &shift)
Translate a single compound object.
Definition Context.cpp:2822
-
helios::Context::scaleObjectAboutCenter
void scaleObjectAboutCenter(uint ObjID, const helios::vec3 &scalefact)
Method to scale a compound object in the x-, y- and z-directions.
Definition Context.cpp:2872
-
helios::Context::cropDomainY
void cropDomainY(const vec2 &ybounds)
Crop the domain in the y-direction such that all primitives lie within some specified y interval.
Definition Context.cpp:2152
-
helios::Context::getObjectType
helios::ObjectType getObjectType(uint ObjID) const
Get an enumeration specifying the type of the object.
Definition Context.cpp:2925
-
helios::Context::colorPrimitiveByDataPseudocolor
void colorPrimitiveByDataPseudocolor(const std::vector< uint > &UUIDs, const std::string &primitive_data, const std::string &colormap, uint Ncolors)
Overwrite primitive color based on a pseudocolor mapping of primitive data values.
Definition Context.cpp:6543
+
helios::Context::getPrimitiveSolidFraction
float getPrimitiveSolidFraction(uint UUID) const
Get fraction of primitive surface area that is non-transparent.
Definition Context.cpp:7165
+
helios::Context::translateObject
void translateObject(uint ObjID, const vec3 &shift)
Translate a single compound object.
Definition Context.cpp:2817
+
helios::Context::scaleObjectAboutCenter
void scaleObjectAboutCenter(uint ObjID, const helios::vec3 &scalefact)
Method to scale a compound object in the x-, y- and z-directions.
Definition Context.cpp:2867
+
helios::Context::cropDomainY
void cropDomainY(const vec2 &ybounds)
Crop the domain in the y-direction such that all primitives lie within some specified y interval.
Definition Context.cpp:2147
+
helios::Context::getObjectType
helios::ObjectType getObjectType(uint ObjID) const
Get an enumeration specifying the type of the object.
Definition Context.cpp:2920
+
helios::Context::colorPrimitiveByDataPseudocolor
void colorPrimitiveByDataPseudocolor(const std::vector< uint > &UUIDs, const std::string &primitive_data, const std::string &colormap, uint Ncolors)
Overwrite primitive color based on a pseudocolor mapping of primitive data values.
Definition Context.cpp:6610
helios::Context::doesPrimitiveDataExist
bool doesPrimitiveDataExist(uint UUID, const char *label) const
Check if primitive data 'label' exists.
Definition Context_data.cpp:1169
-
helios::Context::getTubeObjectNodeColors
std::vector< RGBcolor > getTubeObjectNodeColors(uint ObjID) const
get the node colors of a Tube object from the context
Definition Context.cpp:8045
+
helios::Context::getTubeObjectNodeColors
std::vector< RGBcolor > getTubeObjectNodeColors(uint ObjID) const
get the node colors of a Tube object from the context
Definition Context.cpp:8112
helios::Context::listPrimitiveData
std::vector< std::string > listPrimitiveData(uint UUID) const
Return labels for all primitive data for this particular primitive.
Definition Context_data.cpp:1268
-
helios::Context::getObjectPrimitiveUUIDs
std::vector< uint > getObjectPrimitiveUUIDs(uint ObjID) const
Get primitive UUIDs associated with compound object (single object ID input)
Definition Context.cpp:2892
-
helios::Context::copyPrimitive
uint copyPrimitive(uint UUID)
Make a copy of a primitive from the context.
Definition Context.cpp:1573
-
helios::Context::getPrimitiveTextureSize
helios::int2 getPrimitiveTextureSize(uint UUID) const
Get the size (number of pixels) of primitive texture map image.
Definition Context.cpp:7044
+
helios::Context::getObjectPrimitiveUUIDs
std::vector< uint > getObjectPrimitiveUUIDs(uint ObjID) const
Get primitive UUIDs associated with compound object (single object ID input)
Definition Context.cpp:2887
+
helios::Context::copyPrimitive
uint copyPrimitive(uint UUID)
Make a copy of a primitive from the context.
Definition Context.cpp:1568
+
helios::Context::getPrimitiveTextureSize
helios::int2 getPrimitiveTextureSize(uint UUID) const
Get the size (number of pixels) of primitive texture map image.
Definition Context.cpp:7111
helios::Context::writeOBJ
void writeOBJ(const std::string &filename) const
Write geometry in the Context to a Wavefront file (.obj)
Definition Context_fileIO.cpp:4123
helios::Context::renameGlobalData
void renameGlobalData(const char *old_label, const char *new_label)
Rename global data.
Definition Context_data.cpp:3976
-
helios::Context::getTriangleVertex
helios::vec3 getTriangleVertex(uint UUID, uint number) const
Get a single vertex of a Triangle based on an index.
Definition Context.cpp:1706
-
helios::Context::getTime
helios::Time getTime() const
Get the simulation time.
Definition Context.cpp:1169
-
helios::Context::getPrimitiveColorRGB
helios::RGBcolor getPrimitiveColorRGB(uint UUID) const
Method to return the diffuse color of a Primitive.
Definition Context.cpp:7008
+
helios::Context::getTriangleVertex
helios::vec3 getTriangleVertex(uint UUID, uint number) const
Get a single vertex of a Triangle based on an index.
Definition Context.cpp:1701
+
helios::Context::getTime
helios::Time getTime() const
Get the simulation time.
Definition Context.cpp:1164
+
helios::Context::getPrimitiveColorRGB
helios::RGBcolor getPrimitiveColorRGB(uint UUID) const
Method to return the diffuse color of a Primitive.
Definition Context.cpp:7075
helios::Context::Context
Context(const Context &)=delete
Deleted copy constructor to prevent copying of Context.
helios::Context::loadOBJ
std::vector< uint > loadOBJ(const char *filename, bool silent=false)
Load geometry contained in a Wavefront OBJ file (.obj). Model will be placed at the origin without an...
Definition Context_fileIO.cpp:3734
-
helios::Context::getDomainBoundingBox
void getDomainBoundingBox(helios::vec2 &xbounds, helios::vec2 &ybounds, helios::vec2 &zbounds) const
Get a box that bounds all primitives in the domain.
Definition Context.cpp:2031
+
helios::Context::getDomainBoundingBox
void getDomainBoundingBox(helios::vec2 &xbounds, helios::vec2 &ybounds, helios::vec2 &zbounds) const
Get a box that bounds all primitives in the domain.
Definition Context.cpp:2026
helios::Context::duplicatePrimitiveData
void duplicatePrimitiveData(uint UUID, const char *old_label, const char *new_label)
Duplicate/copy primitive data.
Definition Context_data.cpp:1229
-
helios::Context::getDiskObjectSubdivisionCount
uint getDiskObjectSubdivisionCount(uint ObjID) const
get the subdivision count of a Disk object from the context
Definition Context.cpp:8123
-
helios::Context::setPrimitiveTextureFile
void setPrimitiveTextureFile(uint UUID, const std::string &texturefile)
Set the texture map file for a primitive.
Definition Context.cpp:7040
-
helios::Context::getConeObjectNodes
std::vector< helios::vec3 > getConeObjectNodes(uint ObjID) const
get the nodes of a Cone object from the context
Definition Context.cpp:8131
-
helios::Context::hidePrimitive
void hidePrimitive(const std::vector< uint > &UUIDs)
Hide primitives in the Context such that their UUIDs are not returned in Context::getAllUUIDs()
Definition Context.cpp:1772
-
helios::Context::getSphereObjectPointer
Sphere * getSphereObjectPointer(uint ObjID) const
Get a pointer to a Sphere Compound Object.
Definition Context.cpp:3395
-
helios::Context::overridePrimitiveTextureColor
void overridePrimitiveTextureColor(uint UUID)
Override the color in the texture map for all primitives in the Compound Object, in which case the pr...
Definition Context.cpp:7074
+
helios::Context::getDiskObjectSubdivisionCount
uint getDiskObjectSubdivisionCount(uint ObjID) const
get the subdivision count of a Disk object from the context
Definition Context.cpp:8190
+
helios::Context::setPrimitiveTextureFile
void setPrimitiveTextureFile(uint UUID, const std::string &texturefile)
Set the texture map file for a primitive.
Definition Context.cpp:7107
+
helios::Context::getConeObjectNodes
std::vector< helios::vec3 > getConeObjectNodes(uint ObjID) const
get the nodes of a Cone object from the context
Definition Context.cpp:8198
+
helios::Context::hidePrimitive
void hidePrimitive(const std::vector< uint > &UUIDs)
Hide primitives in the Context such that their UUIDs are not returned in Context::getAllUUIDs()
Definition Context.cpp:1767
+
helios::Context::getSphereObjectPointer
Sphere * getSphereObjectPointer(uint ObjID) const
Get a pointer to a Sphere Compound Object.
Definition Context.cpp:3390
+
helios::Context::overridePrimitiveTextureColor
void overridePrimitiveTextureColor(uint UUID)
Override the color in the texture map for all primitives in the Compound Object, in which case the pr...
Definition Context.cpp:7141
helios::Context::calculatePrimitiveDataMean
void calculatePrimitiveDataMean(const std::vector< uint > &UUIDs, const std::string &label, float &mean) const
Calculate mean of primitive data values (float) for a subset of primitives.
Definition Context_data.cpp:1304
-
helios::Context::getTileObjectSubdivisionCount
helios::int2 getTileObjectSubdivisionCount(uint ObjID) const
get the subdivision count of a tile object from the context
Definition Context.cpp:8001
+
helios::Context::getTileObjectSubdivisionCount
helios::int2 getTileObjectSubdivisionCount(uint ObjID) const
get the subdivision count of a tile object from the context
Definition Context.cpp:8068
helios::Context::getGlobalDataType
HeliosDataType getGlobalDataType(const char *label) const
Get the Helios data type of global data.
Definition Context_data.cpp:4427
-
helios::Context::isPrimitiveHidden
bool isPrimitiveHidden(uint UUID) const
Query whether a primitive is hidden.
Definition Context.cpp:1781
-
helios::Context::getDate
helios::Date getDate() const
Get simulation date.
Definition Context.cpp:1102
-
helios::Context::printObjectInfo
void printObjectInfo(uint ObjID) const
Prints object properties to console (useful for debugging purposes)
Definition Context.cpp:7376
+
helios::Context::isPrimitiveHidden
bool isPrimitiveHidden(uint UUID) const
Query whether a primitive is hidden.
Definition Context.cpp:1776
+
helios::Context::getDate
helios::Date getDate() const
Get simulation date.
Definition Context.cpp:1097
+
helios::Context::printObjectInfo
void printObjectInfo(uint ObjID) const
Prints object properties to console (useful for debugging purposes)
Definition Context.cpp:7443
helios::Context::getRandomGenerator
std::minstd_rand0 * getRandomGenerator()
Get the random number generator engine.
Definition Context.cpp:47
helios::Context::getGlobalDataSize
size_t getGlobalDataSize(const char *label) const
Get the size/length of global data.
Definition Context_data.cpp:4437
helios::Context::getGlobalData
void getGlobalData(const char *label, int &data) const
Get global data value (scalar integer)
Definition Context_data.cpp:4053
-
helios::Context::hideObject
void hideObject(const std::vector< uint > &ObjIDs)
Hide compound objects in the Context such that their object IDs are not returned in Context::getAllOb...
Definition Context.cpp:7778
-
helios::Context::getAllUUIDs
std::vector< uint > getAllUUIDs() const
Get all primitive UUIDs currently in the Context.
Definition Context.cpp:1758
-
helios::Context::getPrimitiveTextureTransparencyData
const std::vector< std::vector< bool > > * getPrimitiveTextureTransparencyData(uint UUID) const
Get the transparency channel pixel data from primitive texture map. If transparency channel does not ...
Definition Context.cpp:7064
-
helios::Context::getTileObjectAreaRatio
float getTileObjectAreaRatio(uint ObjectID) const
Get the area ratio of a tile object (total object area / sub-patch area)
Definition Context.cpp:2929
-
helios::Context::doesObjectExist
bool doesObjectExist(uint ObjID) const
Check whether Compound Object exists in the Context.
Definition Context.cpp:2570
+
helios::Context::hideObject
void hideObject(const std::vector< uint > &ObjIDs)
Hide compound objects in the Context such that their object IDs are not returned in Context::getAllOb...
Definition Context.cpp:7845
+
helios::Context::getAllUUIDs
std::vector< uint > getAllUUIDs() const
Get all primitive UUIDs currently in the Context.
Definition Context.cpp:1753
+
helios::Context::getPrimitiveTextureTransparencyData
const std::vector< std::vector< bool > > * getPrimitiveTextureTransparencyData(uint UUID) const
Get the transparency channel pixel data from primitive texture map. If transparency channel does not ...
Definition Context.cpp:7131
+
helios::Context::getTileObjectAreaRatio
float getTileObjectAreaRatio(uint ObjectID) const
Get the area ratio of a tile object (total object area / sub-patch area)
Definition Context.cpp:2924
+
helios::Context::doesObjectExist
bool doesObjectExist(uint ObjID) const
Check whether Compound Object exists in the Context.
Definition Context.cpp:2565
helios::Context::getPrimitiveDataType
HeliosDataType getPrimitiveDataType(uint UUID, const char *label) const
Get the Helios data type of primitive data.
Definition Context_data.cpp:1155
helios::Context::clearGlobalData
void clearGlobalData(const char *label)
Delete/clear global data.
Definition Context_data.cpp:4045
helios::Context::renameObjectData
void renameObjectData(uint objID, const char *old_label, const char *new_label)
Rename existing object data.
Definition Context_data.cpp:2979
-
helios::Context::getTubeObjectNodes
std::vector< helios::vec3 > getTubeObjectNodes(uint ObjID) const
get the nodes of a Tube object from the context
Definition Context.cpp:8037
+
helios::Context::getTubeObjectNodes
std::vector< helios::vec3 > getTubeObjectNodes(uint ObjID) const
get the nodes of a Tube object from the context
Definition Context.cpp:8104
helios::Context::writePLY
void writePLY(const char *filename) const
Write geometry in the Context to a Stanford polygon file (.ply)
Definition Context_fileIO.cpp:3670
-
helios::Context::getTileObjectCenter
helios::vec3 getTileObjectCenter(uint ObjID) const
Get the Cartesian (x,y,z) center position of a tile object.
Definition Context.cpp:7993
-
helios::Context::scaleTubeGirth
void scaleTubeGirth(uint ObjID, float scale_factor)
Scale the girth for all nodes of a tube object.
Definition Context.cpp:8071
+
helios::Context::getTileObjectCenter
helios::vec3 getTileObjectCenter(uint ObjID) const
Get the Cartesian (x,y,z) center position of a tile object.
Definition Context.cpp:8060
+
helios::Context::scaleTubeGirth
void scaleTubeGirth(uint ObjID, float scale_factor)
Scale the girth for all nodes of a tube object.
Definition Context.cpp:8138
helios::Context::setGlobalData
void setGlobalData(const char *label, const int &data)
Add global data value (int)
Definition Context_data.cpp:3769
-
helios::Context::isPrimitiveTextureColorOverridden
bool isPrimitiveTextureColorOverridden(uint UUID) const
Check if color of texture map is overridden by the diffuse R-G-B color of the primitive.
Definition Context.cpp:7094
-
helios::Context::deleteObject
void deleteObject(uint ObjID)
Delete a single Compound Object from the context.
Definition Context.cpp:2594
-
helios::Context::getObjectArea
float getObjectArea(uint ObjID) const
Method to return the one-sided surface area of an object.
Definition Context.cpp:7797
-
helios::Context::getObjectTextureFile
std::string getObjectTextureFile(uint ObjID) const
Method to return the texture map file of an Object.
Definition Context.cpp:7809
+
helios::Context::isPrimitiveTextureColorOverridden
bool isPrimitiveTextureColorOverridden(uint UUID) const
Check if color of texture map is overridden by the diffuse R-G-B color of the primitive.
Definition Context.cpp:7161
+
helios::Context::deleteObject
void deleteObject(uint ObjID)
Delete a single Compound Object from the context.
Definition Context.cpp:2589
+
helios::Context::getObjectArea
float getObjectArea(uint ObjID) const
Method to return the one-sided surface area of an object.
Definition Context.cpp:7864
+
helios::Context::getObjectTextureFile
std::string getObjectTextureFile(uint ObjID) const
Method to return the texture map file of an Object.
Definition Context.cpp:7876
helios::Context::aggregatePrimitiveDataSum
void aggregatePrimitiveDataSum(const std::vector< uint > &UUIDs, const std::vector< std::string > &primitive_data_labels, const std::string &result_primitive_data_label)
Sum multiple primitive data values for each primitive together and store result in new primitive data...
Definition Context_data.cpp:1893
-
helios::Context::getPolymeshObjectVolume
float getPolymeshObjectVolume(uint ObjID) const
Get the volume of a Polygon Mesh object from the context.
Definition Context.cpp:8159
-
helios::Context::scalePrimitive
void scalePrimitive(uint UUID, const helios::vec3 &S)
Scale a primitive using its UUID relative to the origin (0,0,0)
Definition Context.cpp:1486
-
helios::Context::getTubeObjectPointer
Tube * getTubeObjectPointer(uint ObjID) const
Get a pointer to a Tube Compound Object.
Definition Context.cpp:3471
-
helios::Context::getPatchSize
helios::vec2 getPatchSize(uint UUID) const
Get the size of a patch element.
Definition Context.cpp:1679
+
helios::Context::getPolymeshObjectVolume
float getPolymeshObjectVolume(uint ObjID) const
Get the volume of a Polygon Mesh object from the context.
Definition Context.cpp:8226
+
helios::Context::scalePrimitive
void scalePrimitive(uint UUID, const helios::vec3 &S)
Scale a primitive using its UUID relative to the origin (0,0,0)
Definition Context.cpp:1481
+
helios::Context::getTubeObjectPointer
Tube * getTubeObjectPointer(uint ObjID) const
Get a pointer to a Tube Compound Object.
Definition Context.cpp:3466
+
helios::Context::getPatchSize
helios::vec2 getPatchSize(uint UUID) const
Get the size of a patch element.
Definition Context.cpp:1674
helios::Context::writePrimitiveData
void writePrimitiveData(std::string filename, const std::vector< std::string > &column_format, bool print_header=false) const
Write primitive data to an ASCII text file for all primitives in the Context.
Definition Context_fileIO.cpp:4465
-
helios::Context::getTileObjectVertices
std::vector< helios::vec3 > getTileObjectVertices(uint ObjID) const
get the vertices of a tile object from the context
Definition Context.cpp:8013
-
helios::Context::markGeometryDirty
void markGeometryDirty()
Mark the Context geometry as "dirty", meaning that the geometry has been modified since last set as c...
Definition Context.cpp:156
-
helios::Context::getPrimitiveBoundingBox
void getPrimitiveBoundingBox(uint UUID, vec3 &min_corner, vec3 &max_corner) const
Get the axis-aligned bounding box for a single primitive.
Definition Context.cpp:6934
+
helios::Context::getTileObjectVertices
std::vector< helios::vec3 > getTileObjectVertices(uint ObjID) const
get the vertices of a tile object from the context
Definition Context.cpp:8080
+
helios::Context::markGeometryDirty
void markGeometryDirty()
Mark the Context geometry as "dirty", meaning that the geometry has been modified since last set as c...
Definition Context.cpp:151
+
helios::Context::getPrimitiveBoundingBox
void getPrimitiveBoundingBox(uint UUID, vec3 &min_corner, vec3 &max_corner) const
Get the axis-aligned bounding box for a single primitive.
Definition Context.cpp:7001
helios::Context::writeXML
void writeXML(const char *filename, bool quiet=false) const
Write Context geometry and data to XML file for all UUIDs in the context.
Definition Context_fileIO.cpp:2658
-
helios::Context::getPrimitiveNormal
helios::vec3 getPrimitiveNormal(uint UUID) const
Method to return the normal vector of a Primitive.
Definition Context.cpp:6981
+
helios::Context::getPrimitiveNormal
helios::vec3 getPrimitiveNormal(uint UUID) const
Method to return the normal vector of a Primitive.
Definition Context.cpp:7048
helios::Context::getObjectDataSize
uint getObjectDataSize(uint objID, const char *label) const
Get the size/length of primitive data.
Definition Context_data.cpp:2901
helios::Context::calculatePrimitiveDataAreaWeightedSum
void calculatePrimitiveDataAreaWeightedSum(const std::vector< uint > &UUIDs, const std::string &label, float &awt_sum) const
Calculate sum of primitive data values (float) for a subset of primitives, where each value in the su...
Definition Context_data.cpp:1637
-
helios::Context::incrementGlobalData
void incrementGlobalData(const char *label, int increment)
Increase value of global data (int) by some value.
Definition Context_data.cpp:4457
+
helios::Context::incrementGlobalData
void incrementGlobalData(const char *label, int increment)
Increase value of global data (int) by some value.
Definition Context_data.cpp:4468
helios::Context::clearPrimitiveData
void clearPrimitiveData(uint UUID, const char *label)
Clear primitive data for a single primitive based on its UUID.
Definition Context_data.cpp:1176
helios::Context::setPrimitiveData
void setPrimitiveData(const uint &UUID, const char *label, const int &data)
Add data value (int) associated with a primitive element.
Definition Context_data.cpp:655
-
helios::Context::getConeObjectAxisUnitVector
helios::vec3 getConeObjectAxisUnitVector(uint ObjID) const
get the axis unit vector of a Cone object from the context
Definition Context.cpp:8147
-
helios::Context::getVoxelCenter
helios::vec3 getVoxelCenter(uint UUID) const
Get the Cartesian (x,y,z) center position of a voxel element.
Definition Context.cpp:1745
+
helios::Context::getConeObjectAxisUnitVector
helios::vec3 getConeObjectAxisUnitVector(uint ObjID) const
get the axis unit vector of a Cone object from the context
Definition Context.cpp:8214
+
helios::Context::getVoxelCenter
helios::vec3 getVoxelCenter(uint UUID) const
Get the Cartesian (x,y,z) center position of a voxel element.
Definition Context.cpp:1740
helios::Context::calculatePrimitiveDataAreaWeightedMean
void calculatePrimitiveDataAreaWeightedMean(const std::vector< uint > &UUIDs, const std::string &label, float &awt_mean) const
Calculate mean of primitive data values (float) for a subset of primitives, where each value in the m...
Definition Context_data.cpp:1413
-
helios::Context::getDiskObjectSize
helios::vec2 getDiskObjectSize(uint ObjID) const
get the size of a Disk object from the context
Definition Context.cpp:8119
-
helios::Context::doesPrimitiveExist
bool doesPrimitiveExist(uint UUID) const
Check if primitive exists for a given UUID.
Definition Context.cpp:1654
-
helios::Context::areObjectPrimitivesComplete
bool areObjectPrimitivesComplete(uint objID) const
Method to query whether all object primitives are in tact.
Definition Context.cpp:2525
-
helios::Context::getConeObjectLength
float getConeObjectLength(uint ObjID) const
get the length of a Cone object from the context
Definition Context.cpp:8151
-
helios::Context::getTileObjectPointer
Tile * getTileObjectPointer(uint ObjID) const
Get a pointer to a Tile Compound Object.
Definition Context.cpp:3297
-
helios::Context::scalePrimitiveAboutPoint
void scalePrimitiveAboutPoint(uint UUID, const helios::vec3 &S, const helios::vec3 point)
Scale a primitive using its UUID about an arbitrary point in space.
Definition Context.cpp:1507
-
helios::Context::useObjectTextureColor
void useObjectTextureColor(uint ObjID)
For all primitives in the Compound Object, use the texture map to color the primitives rather than th...
Definition Context.cpp:7865
-
helios::Context::getSphereObjectSubdivisionCount
uint getSphereObjectSubdivisionCount(uint ObjID) const
get the subdivision count of a Sphere object from the context
Definition Context.cpp:8025
+
helios::Context::getDiskObjectSize
helios::vec2 getDiskObjectSize(uint ObjID) const
get the size of a Disk object from the context
Definition Context.cpp:8186
+
helios::Context::doesPrimitiveExist
bool doesPrimitiveExist(uint UUID) const
Check if primitive exists for a given UUID.
Definition Context.cpp:1649
+
helios::Context::areObjectPrimitivesComplete
bool areObjectPrimitivesComplete(uint objID) const
Method to query whether all object primitives are in tact.
Definition Context.cpp:2520
+
helios::Context::getConeObjectLength
float getConeObjectLength(uint ObjID) const
get the length of a Cone object from the context
Definition Context.cpp:8218
+
helios::Context::getTileObjectPointer
Tile * getTileObjectPointer(uint ObjID) const
Get a pointer to a Tile Compound Object.
Definition Context.cpp:3292
+
helios::Context::scalePrimitiveAboutPoint
void scalePrimitiveAboutPoint(uint UUID, const helios::vec3 &S, const helios::vec3 point)
Scale a primitive using its UUID about an arbitrary point in space.
Definition Context.cpp:1502
+
helios::Context::useObjectTextureColor
void useObjectTextureColor(uint ObjID)
For all primitives in the Compound Object, use the texture map to color the primitives rather than th...
Definition Context.cpp:7932
+
helios::Context::getSphereObjectSubdivisionCount
uint getSphereObjectSubdivisionCount(uint ObjID) const
get the subdivision count of a Sphere object from the context
Definition Context.cpp:8092
helios::Context::scanXMLForTag
static bool scanXMLForTag(const std::string &filename, const std::string &tag, const std::string &label="")
Scan a Helios XML file to check if a tag exists.
Definition Context_fileIO.cpp:2403
helios::Context::listObjectData
std::vector< std::string > listObjectData(uint ObjID) const
Return labels for all object data for this particular object.
Definition Context_data.cpp:3008
-
helios::Context::getConeObjectNodeRadii
std::vector< float > getConeObjectNodeRadii(uint ObjID) const
get the node radii of a Cone object from the context
Definition Context.cpp:8135
+
helios::Context::getConeObjectNodeRadii
std::vector< float > getConeObjectNodeRadii(uint ObjID) const
get the node radii of a Cone object from the context
Definition Context.cpp:8202
+
helios::Context::listGlobalData
std::vector< std::string > listGlobalData() const
List the labels for all global data in the Context.
Definition Context_data.cpp:4447
helios::Context::writeXML_byobject
void writeXML_byobject(const char *filename, const std::vector< uint > &UUIDs, bool quiet=false) const
Write Context geometry and data to XML file for a subset of compound object IDs in the context.
Definition Context_fileIO.cpp:2662
-
helios::Context::getBoxObjectVolume
float getBoxObjectVolume(uint ObjID) const
get the volume of a Box object from the context
Definition Context.cpp:8111
+
helios::Context::getBoxObjectVolume
float getBoxObjectVolume(uint ObjID) const
get the volume of a Box object from the context
Definition Context.cpp:8178
helios::Context::copyObjectData
void copyObjectData(uint source_objID, uint destination_objID)
copy all object data from one compound object to another
Definition Context_data.cpp:2915
-
helios::Context::setTime
void setTime(int minute, int hour)
Set simulation time.
Definition Context.cpp:1139
-
helios::Context::getPrimitiveVertices
std::vector< helios::vec3 > getPrimitiveVertices(uint UUID) const
Method to return the (x,y,z) coordinates of the vertices of a Primitive.
Definition Context.cpp:6999
+
helios::Context::setTime
void setTime(int minute, int hour)
Set simulation time.
Definition Context.cpp:1134
+
helios::Context::getPrimitiveVertices
std::vector< helios::vec3 > getPrimitiveVertices(uint UUID) const
Method to return the (x,y,z) coordinates of the vertices of a Primitive.
Definition Context.cpp:7066
helios::Context::duplicateGlobalData
void duplicateGlobalData(const char *old_label, const char *new_label)
Make a copy of global data.
Definition Context_data.cpp:3987
-
helios::Context::getSphereObjectVolume
float getSphereObjectVolume(uint ObjID) const
get the volume of a Sphere object from the context
Definition Context.cpp:8029
-
helios::Context::setObjectTransformationMatrix
void setObjectTransformationMatrix(uint ObjID, float(&T)[16])
Method to set the Affine transformation matrix of an Object.
Definition Context.cpp:7817
-
helios::Context::cropDomain
void cropDomain(std::vector< uint > &UUIDs, const vec2 &xbounds, const vec2 &ybounds, const vec2 &zbounds)
Crop specified UUIDs such that they lie within some specified axis-aligned box.
Definition Context.cpp:2198
+
helios::Context::getSphereObjectVolume
float getSphereObjectVolume(uint ObjID) const
get the volume of a Sphere object from the context
Definition Context.cpp:8096
+
helios::Context::setObjectTransformationMatrix
void setObjectTransformationMatrix(uint ObjID, float(&T)[16])
Method to set the Affine transformation matrix of an Object.
Definition Context.cpp:7884
+
helios::Context::cropDomain
void cropDomain(std::vector< uint > &UUIDs, const vec2 &xbounds, const vec2 &ybounds, const vec2 &zbounds)
Crop specified UUIDs such that they lie within some specified axis-aligned box.
Definition Context.cpp:2193
helios::Context::operator=
void operator=(const Context &)=delete
Deleted assignment operator to prevent copying of Context.
-
helios::Context::setTubeNodes
void setTubeNodes(uint ObjID, const std::vector< helios::vec3 > &node_xyz)
Set tube vertex coordinates at each segment node.
Definition Context.cpp:8092
+
helios::Context::setTubeNodes
void setTubeNodes(uint ObjID, const std::vector< helios::vec3 > &node_xyz)
Set tube vertex coordinates at each segment node.
Definition Context.cpp:8159
helios::Context::selfTest
static int selfTest()
Run a self-test of the Context. The Context self-test runs through validation checks of Context-relat...
Definition selfTest.cpp:20
-
helios::Context::getConeObjectNodeRadius
float getConeObjectNodeRadius(uint ObjID, int number) const
get a node radius of a Cone object from the context
Definition Context.cpp:8143
-
helios::Context::cleanDeletedObjectIDs
void cleanDeletedObjectIDs(std::vector< uint > &objIDs) const
Delete Object IDs from vector if objects no longer exist (1D vector)
Definition Context.cpp:2529
-
helios::Context::getConeObjectVolume
float getConeObjectVolume(uint ObjID) const
get the volume of a Cone object from the context
Definition Context.cpp:8155
-
helios::Context::getBoxObjectCenter
helios::vec3 getBoxObjectCenter(uint ObjID) const
get the center of a Box object from the context
Definition Context.cpp:8099
+
helios::Context::getConeObjectNodeRadius
float getConeObjectNodeRadius(uint ObjID, int number) const
get a node radius of a Cone object from the context
Definition Context.cpp:8210
+
helios::Context::cleanDeletedObjectIDs
void cleanDeletedObjectIDs(std::vector< uint > &objIDs) const
Delete Object IDs from vector if objects no longer exist (1D vector)
Definition Context.cpp:2524
+
helios::Context::getConeObjectVolume
float getConeObjectVolume(uint ObjID) const
get the volume of a Cone object from the context
Definition Context.cpp:8222
+
helios::Context::getBoxObjectCenter
helios::vec3 getBoxObjectCenter(uint ObjID) const
get the center of a Box object from the context
Definition Context.cpp:8166
helios::Context::getObjectDataType
HeliosDataType getObjectDataType(uint objID, const char *label) const
Get the Helios data type of primitive data.
Definition Context_data.cpp:2894
-
helios::Context::setPrimitiveTransformationMatrix
void setPrimitiveTransformationMatrix(uint UUID, float(&T)[16])
Method to set the Affine transformation matrix of a Primitive.
Definition Context.cpp:6989
+
helios::Context::setPrimitiveTransformationMatrix
void setPrimitiveTransformationMatrix(uint UUID, float(&T)[16])
Method to set the Affine transformation matrix of a Primitive.
Definition Context.cpp:7056
helios::Context::sumPrimitiveSurfaceArea
float sumPrimitiveSurfaceArea(const std::vector< uint > &UUIDs) const
Sum the one-sided surface area of a group of primitives.
Definition Context_data.cpp:2202
-
helios::Context::getObjectTransformationMatrix
void getObjectTransformationMatrix(uint ObjID, float(&T)[16]) const
Method to return the Affine transformation matrix of an Object.
Definition Context.cpp:7813
-
helios::Context::setTubeRadii
void setTubeRadii(uint ObjID, const std::vector< float > &node_radii)
Set tube radii at each segment node.
Definition Context.cpp:8078
-
helios::Context::objectHasTexture
bool objectHasTexture(uint ObjID) const
Method to check whether an Object has texture data.
Definition Context.cpp:7827
-
helios::Context::scaleObject
void scaleObject(uint ObjID, const helios::vec3 &scalefact)
Method to scale a compound object in the x-, y- and z-directions.
Definition Context.cpp:2862
+
helios::Context::getObjectTransformationMatrix
void getObjectTransformationMatrix(uint ObjID, float(&T)[16]) const
Method to return the Affine transformation matrix of an Object.
Definition Context.cpp:7880
+
helios::Context::setTubeRadii
void setTubeRadii(uint ObjID, const std::vector< float > &node_radii)
Set tube radii at each segment node.
Definition Context.cpp:8145
+
helios::Context::objectHasTexture
bool objectHasTexture(uint ObjID) const
Method to check whether an Object has texture data.
Definition Context.cpp:7894
+
helios::Context::scaleObject
void scaleObject(uint ObjID, const helios::vec3 &scalefact)
Method to scale a compound object in the x-, y- and z-directions.
Definition Context.cpp:2857
helios::Disk
Disk compound object class.
Definition Context.h:795
-
helios::Disk::getSize
vec2 getSize() const
Get the lateral dimensions of the disk object.
Definition Context.cpp:3939
-
helios::Disk::getSubdivisionCount
int2 getSubdivisionCount() const
Get the number of sub-triangle divisions of the disk object.
Definition Context.cpp:3971
+
helios::Disk::getSize
vec2 getSize() const
Get the lateral dimensions of the disk object.
Definition Context.cpp:3991
+
helios::Disk::getSubdivisionCount
int2 getSubdivisionCount() const
Get the number of sub-triangle divisions of the disk object.
Definition Context.cpp:4023
helios::Disk::~Disk
~Disk() override=default
Disk destructor.
-
helios::Disk::getCenter
vec3 getCenter() const
Get the Cartesian coordinates of the center of the disk object.
Definition Context.cpp:3955
-
helios::Disk::Disk
Disk(uint a_OID, const std::vector< uint > &a_UUIDs, int2 a_subdiv, const char *a_texturefile, helios::Context *a_context)
Default constructor.
Definition Context.cpp:3919
-
helios::Disk::setSubdivisionCount
void setSubdivisionCount(int2 subdiv)
Set the number of disk sub-triangle divisions.
Definition Context.cpp:3975
+
helios::Disk::getCenter
vec3 getCenter() const
Get the Cartesian coordinates of the center of the disk object.
Definition Context.cpp:4007
+
helios::Disk::Disk
Disk(uint a_OID, const std::vector< uint > &a_UUIDs, int2 a_subdiv, const char *a_texturefile, helios::Context *a_context)
Default constructor.
Definition Context.cpp:3971
+
helios::Disk::setSubdivisionCount
void setSubdivisionCount(int2 subdiv)
Set the number of disk sub-triangle divisions.
Definition Context.cpp:4027
helios::Polymesh
Polymesh compound object class.
Definition Context.h:828
helios::Polymesh::~Polymesh
~Polymesh() override=default
Polymesh destructor.
-
helios::Polymesh::Polymesh
Polymesh(uint a_OID, const std::vector< uint > &a_UUIDs, const char *a_texturefile, helios::Context *a_context)
Default constructor.
Definition Context.cpp:3979
-
helios::Polymesh::getVolume
float getVolume() const
Get the volume of the polymesh object.
Definition Context.cpp:3998
+
helios::Polymesh::Polymesh
Polymesh(uint a_OID, const std::vector< uint > &a_UUIDs, const char *a_texturefile, helios::Context *a_context)
Default constructor.
Definition Context.cpp:4031
+
helios::Polymesh::getVolume
float getVolume() const
Get the volume of the polymesh object.
Definition Context.cpp:4050
helios::Sphere
Sphere compound object class.
Definition Context.h:624
-
helios::Sphere::getSubdivisionCount
uint getSubdivisionCount() const
Get the number of sub-patch divisions of the sphere object.
Definition Context.cpp:3440
-
helios::Sphere::getRadius
helios::vec3 getRadius() const
Get the radius of the sphere.
Definition Context.cpp:3402
-
helios::Sphere::getVolume
float getVolume() const
Get the volume of the sphere object.
Definition Context.cpp:3448
-
helios::Sphere::getCenter
vec3 getCenter() const
Get the Cartesian coordinates of the center of the sphere object.
Definition Context.cpp:3424
-
helios::Sphere::Sphere
Sphere(uint a_OID, const std::vector< uint > &a_UUIDs, uint a_subdiv, const char *a_texturefile, helios::Context *a_context)
Default constructor.
Definition Context.cpp:3382
-
helios::Sphere::setSubdivisionCount
void setSubdivisionCount(uint subdiv)
Set the number of sphere tesselation divisions.
Definition Context.cpp:3444
+
helios::Sphere::getSubdivisionCount
uint getSubdivisionCount() const
Get the number of sub-patch divisions of the sphere object.
Definition Context.cpp:3435
+
helios::Sphere::getRadius
helios::vec3 getRadius() const
Get the radius of the sphere.
Definition Context.cpp:3397
+
helios::Sphere::getVolume
float getVolume() const
Get the volume of the sphere object.
Definition Context.cpp:3443
+
helios::Sphere::getCenter
vec3 getCenter() const
Get the Cartesian coordinates of the center of the sphere object.
Definition Context.cpp:3419
+
helios::Sphere::Sphere
Sphere(uint a_OID, const std::vector< uint > &a_UUIDs, uint a_subdiv, const char *a_texturefile, helios::Context *a_context)
Default constructor.
Definition Context.cpp:3377
+
helios::Sphere::setSubdivisionCount
void setSubdivisionCount(uint subdiv)
Set the number of sphere tesselation divisions.
Definition Context.cpp:3439
helios::Sphere::~Sphere
~Sphere() override=default
Sphere destructor.
helios::Texture
Texture map data structure.
Definition Context.h:67
-
helios::Texture::getTextureFile
std::string getTextureFile() const
Get the name/path of the texture map file.
Definition Context.cpp:132
-
helios::Texture::hasTransparencyChannel
bool hasTransparencyChannel() const
Check whether the texture has a transparency channel.
Definition Context.cpp:140
-
helios::Texture::getImageResolution
helios::int2 getImageResolution() const
Get the size of the texture in pixels (horizontal x vertical)
Definition Context.cpp:136
-
helios::Texture::getSolidFraction
float getSolidFraction() const
Get the solid fraction of the texture transparency channel (if it exists)
Definition Context.cpp:148
-
helios::Texture::getTransparencyData
const std::vector< std::vector< bool > > * getTransparencyData() const
Get the data in the texture transparency channel (if it exists)
Definition Context.cpp:144
+
helios::Texture::getTextureFile
std::string getTextureFile() const
Get the name/path of the texture map file.
Definition Context.cpp:127
+
helios::Texture::hasTransparencyChannel
bool hasTransparencyChannel() const
Check whether the texture has a transparency channel.
Definition Context.cpp:135
+
helios::Texture::getImageResolution
helios::int2 getImageResolution() const
Get the size of the texture in pixels (horizontal x vertical)
Definition Context.cpp:131
+
helios::Texture::getSolidFraction
float getSolidFraction() const
Get the solid fraction of the texture transparency channel (if it exists)
Definition Context.cpp:143
+
helios::Texture::getTransparencyData
const std::vector< std::vector< bool > > * getTransparencyData() const
Get the data in the texture transparency channel (if it exists)
Definition Context.cpp:139
helios::Tile
Tile compound object class.
Definition Context.h:581
helios::Tile::~Tile
~Tile() override=default
Tile destructor.
-
helios::Tile::getCenter
vec3 getCenter() const
Get the Cartesian coordinates of the center of the tile object.
Definition Context.cpp:3311
-
helios::Tile::getSubdivisionCount
helios::int2 getSubdivisionCount() const
Get the number of sub-patch divisions of the tile.
Definition Context.cpp:3328
-
helios::Tile::setSubdivisionCount
void setSubdivisionCount(const helios::int2 &subdiv)
Set the number of tile sub-patch divisions.
Definition Context.cpp:3332
-
helios::Tile::getTextureUV
std::vector< helios::vec2 > getTextureUV() const
Get the normalized (u,v) coordinates of the texture at each of the four corners of the tile object.
Definition Context.cpp:3376
-
helios::Tile::getSize
helios::vec2 getSize() const
Get the dimensions of the entire tile object.
Definition Context.cpp:3304
-
helios::Tile::getVertices
std::vector< helios::vec3 > getVertices() const
Get the Cartesian coordinates of each of the four corners of the tile object.
Definition Context.cpp:3337
-
helios::Tile::getNormal
vec3 getNormal() const
Get a unit vector normal to the tile object surface.
Definition Context.cpp:3370
-
helios::Tile::Tile
Tile(uint a_OID, const std::vector< uint > &a_UUIDs, const int2 &a_subdiv, const char *a_texturefile, helios::Context *a_context)
Default constructor.
Definition Context.cpp:3284
+
helios::Tile::getCenter
vec3 getCenter() const
Get the Cartesian coordinates of the center of the tile object.
Definition Context.cpp:3306
+
helios::Tile::getSubdivisionCount
helios::int2 getSubdivisionCount() const
Get the number of sub-patch divisions of the tile.
Definition Context.cpp:3323
+
helios::Tile::setSubdivisionCount
void setSubdivisionCount(const helios::int2 &subdiv)
Set the number of tile sub-patch divisions.
Definition Context.cpp:3327
+
helios::Tile::getTextureUV
std::vector< helios::vec2 > getTextureUV() const
Get the normalized (u,v) coordinates of the texture at each of the four corners of the tile object.
Definition Context.cpp:3371
+
helios::Tile::getSize
helios::vec2 getSize() const
Get the dimensions of the entire tile object.
Definition Context.cpp:3299
+
helios::Tile::getVertices
std::vector< helios::vec3 > getVertices() const
Get the Cartesian coordinates of each of the four corners of the tile object.
Definition Context.cpp:3332
+
helios::Tile::getNormal
vec3 getNormal() const
Get a unit vector normal to the tile object surface.
Definition Context.cpp:3365
+
helios::Tile::Tile
Tile(uint a_OID, const std::vector< uint > &a_UUIDs, const int2 &a_subdiv, const char *a_texturefile, helios::Context *a_context)
Default constructor.
Definition Context.cpp:3279
helios::Tube
Tube compound object class.
Definition Context.h:660
-
helios::Tube::Tube
Tube(uint a_OID, const std::vector< uint > &a_UUIDs, const std::vector< vec3 > &a_nodes, const std::vector< float > &a_radius, const std::vector< helios::RGBcolor > &a_colors, const std::vector< std::vector< helios::vec3 > > &a_triangle_vertices, uint a_subdiv, const char *a_texturefile, helios::Context *a_context)
Default constructor.
Definition Context.cpp:3453
+
helios::Tube::Tube
Tube(uint a_OID, const std::vector< uint > &a_UUIDs, const std::vector< vec3 > &a_nodes, const std::vector< float > &a_radius, const std::vector< helios::RGBcolor > &a_colors, const std::vector< std::vector< helios::vec3 > > &a_triangle_vertices, uint a_subdiv, const char *a_texturefile, helios::Context *a_context)
Default constructor.
Definition Context.cpp:3448
helios::Tube::~Tube
~Tube() override=default
Tube destructor.
-
helios::Tube::getSegmentVolume
float getSegmentVolume(uint segment_index) const
Get the volume of a segment within the tube object.
Definition Context.cpp:3546
-
helios::Tube::getNodeRadii
std::vector< float > getNodeRadii() const
Get the radius at each of the tube object nodes.
Definition Context.cpp:3493
-
helios::Tube::scaleTubeGirth
void scaleTubeGirth(float S)
Scale the girth of the tube object.
Definition Context.cpp:3736
-
helios::Tube::setTubeRadii
void setTubeRadii(const std::vector< float > &node_radii)
Set tube radii at each segment node.
Definition Context.cpp:3756
-
helios::Tube::getTriangleVertices
std::vector< std::vector< helios::vec3 > > getTriangleVertices() const
Get positions of triangle vertices comprising the tube object.
Definition Context.cpp:3514
-
helios::Tube::getVolume
float getVolume() const
Get the volume of the tube object.
Definition Context.cpp:3532
-
helios::Tube::appendTubeSegment
void appendTubeSegment(const helios::vec3 &node_position, float node_radius, const helios::RGBcolor &node_color)
Append an additional segment to the existing tube object.
Definition Context.cpp:3560
-
helios::Tube::getNodeColors
std::vector< helios::RGBcolor > getNodeColors() const
Get the colors at each of the tube object nodes.
Definition Context.cpp:3510
-
helios::Tube::getNodes
std::vector< helios::vec3 > getNodes() const
Get the Cartesian coordinates of each of the tube object nodes.
Definition Context.cpp:3478
-
helios::Tube::getSubdivisionCount
uint getSubdivisionCount() const
Get the number of sub-triangle divisions of the tube object.
Definition Context.cpp:3518
-
helios::Tube::scaleTubeLength
void scaleTubeLength(float S)
Scale the length of the tube object.
Definition Context.cpp:3779
-
helios::Tube::getLength
float getLength() const
Get the length of the tube object.
Definition Context.cpp:3522
-
helios::Tube::setTubeNodes
void setTubeNodes(const std::vector< helios::vec3 > &node_xyz)
Set tube vertex coordinates at each segment node.
Definition Context.cpp:3805
+
helios::Tube::getSegmentVolume
float getSegmentVolume(uint segment_index) const
Get the volume of a segment within the tube object.
Definition Context.cpp:3541
+
helios::Tube::getNodeRadii
std::vector< float > getNodeRadii() const
Get the radius at each of the tube object nodes.
Definition Context.cpp:3488
+
helios::Tube::scaleTubeGirth
void scaleTubeGirth(float S)
Scale the girth of the tube object.
Definition Context.cpp:3788
+
helios::Tube::setTubeRadii
void setTubeRadii(const std::vector< float > &node_radii)
Set tube radii at each segment node.
Definition Context.cpp:3808
+
helios::Tube::getTriangleVertices
std::vector< std::vector< helios::vec3 > > getTriangleVertices() const
Get positions of triangle vertices comprising the tube object.
Definition Context.cpp:3509
+
helios::Tube::getVolume
float getVolume() const
Get the volume of the tube object.
Definition Context.cpp:3527
+
helios::Tube::appendTubeSegment
void appendTubeSegment(const helios::vec3 &node_position, float node_radius, const helios::RGBcolor &node_color)
Append an additional segment to the existing tube object.
Definition Context.cpp:3555
+
helios::Tube::getNodeColors
std::vector< helios::RGBcolor > getNodeColors() const
Get the colors at each of the tube object nodes.
Definition Context.cpp:3505
+
helios::Tube::getNodes
std::vector< helios::vec3 > getNodes() const
Get the Cartesian coordinates of each of the tube object nodes.
Definition Context.cpp:3473
+
helios::Tube::getSubdivisionCount
uint getSubdivisionCount() const
Get the number of sub-triangle divisions of the tube object.
Definition Context.cpp:3513
+
helios::Tube::scaleTubeLength
void scaleTubeLength(float S)
Scale the length of the tube object.
Definition Context.cpp:3831
+
helios::Tube::getLength
float getLength() const
Get the length of the tube object.
Definition Context.cpp:3517
+
helios::Tube::setTubeNodes
void setTubeNodes(const std::vector< helios::vec3 > &node_xyz)
Set tube vertex coordinates at each segment node.
Definition Context.cpp:3857
helios::XMLparser
Class for parsing XML input files.
Definition Context.h:1698
helios::XMLparser::parse_data_vec3
static int parse_data_vec3(const pugi::xml_node &node_data, std::vector< vec3 > &data)
Parse vector data of type 'vec3' within an XML tag.
Definition Context_fileIO.cpp:154
helios::XMLparser::parse_data_int2
static int parse_data_int2(const pugi::xml_node &node_data, std::vector< int2 > &data)
Parse vector data of type 'int2' within an XML tag.
Definition Context_fileIO.cpp:206
@@ -3215,46 +3219,46 @@
helios::XMLparser::parse_data_int4
static int parse_data_int4(const pugi::xml_node &node_data, std::vector< int4 > &data)
Parse vector data of type 'int4' within an XML tag.
Definition Context_fileIO.cpp:255
helios::XMLparser::parse_vertices
static int parse_vertices(const pugi::xml_node &node_data, std::vector< float > &vertices)
Parse the value within a <vertices> (primitive vertex coordinates) tag.
Definition Context_fileIO.cpp:380
-
helios::Context::addDiskObject
uint addDiskObject(uint Ndivs, const helios::vec3 &center, const helios::vec2 &size)
Add new Disk geometric primitive to the Context given its center, and size.
Definition Context.cpp:5133
-
helios::Context::addTubeObject
uint addTubeObject(uint radial_subdivisions, const std::vector< vec3 > &nodes, const std::vector< float > &radius)
Add a 3D tube compound object to the Context.
Definition Context.cpp:4638
-
helios::Context::addConeObject
uint addConeObject(uint Ndivs, const vec3 &node0, const vec3 &node1, float radius0, float radius1)
Add a 3D cone compound object to the Context.
Definition Context.cpp:5303
-
helios::Context::addDisk
std::vector< uint > addDisk(uint Ndivs, const helios::vec3 &center, const helios::vec2 &size)
Add new Disk geometric primitive to the Context given its center, and size.
Definition Context.cpp:6233
-
helios::Context::addBox
std::vector< uint > addBox(const vec3 &center, const vec3 &size, const int3 &subdiv)
Add a rectangular prism tessellated with Patch primitives.
Definition Context.cpp:6024
-
helios::Context::addBoxObject
uint addBoxObject(const vec3 &center, const vec3 &size, const int3 &subdiv)
Add a rectangular prism tessellated with Patch primitives.
Definition Context.cpp:4877
-
helios::Context::addPolymeshObject
uint addPolymeshObject(const std::vector< uint > &UUIDs)
Add new Polymesh Compound Object.
Definition Context.cpp:5276
-
helios::Context::addSphere
std::vector< uint > addSphere(uint Ndivs, const vec3 &center, float radius)
Add a spherical compound object to the Context.
Definition Context.cpp:5523
-
helios::Context::addTube
std::vector< uint > addTube(uint Ndivs, const std::vector< vec3 > &nodes, const std::vector< float > &radius)
Add a 3D tube compound object to the Context.
Definition Context.cpp:5807
-
helios::Context::addTile
std::vector< uint > addTile(const vec3 &center, const vec2 &size, const SphericalCoord &rotation, const int2 &subdiv)
Add a patch that is subdivided into a regular grid of sub-patches (tiled)
Definition Context.cpp:5686
-
helios::Context::addTileObject
uint addTileObject(const vec3 &center, const vec2 &size, const SphericalCoord &rotation, const int2 &subdiv)
Add a patch that is subdivided into a regular grid of sub-patches (tiled)
Definition Context.cpp:4460
-
helios::Context::addCone
std::vector< uint > addCone(uint Ndivs, const vec3 &node0, const vec3 &node1, float radius0, float radius1)
Add a 3D cone to the Context.
Definition Context.cpp:6336
-
helios::Context::addSphereObject
uint addSphereObject(uint Ndivs, const vec3 &center, float radius)
Add a spherical compound object to the Context.
Definition Context.cpp:4220
+
helios::Context::addDiskObject
uint addDiskObject(uint Ndivs, const helios::vec3 &center, const helios::vec2 &size)
Add new Disk geometric primitive to the Context given its center, and size.
Definition Context.cpp:5200
+
helios::Context::addTubeObject
uint addTubeObject(uint radial_subdivisions, const std::vector< vec3 > &nodes, const std::vector< float > &radius)
Add a 3D tube compound object to the Context.
Definition Context.cpp:4690
+
helios::Context::addConeObject
uint addConeObject(uint Ndivs, const vec3 &node0, const vec3 &node1, float radius0, float radius1)
Add a 3D cone compound object to the Context.
Definition Context.cpp:5370
+
helios::Context::addDisk
std::vector< uint > addDisk(uint Ndivs, const helios::vec3 &center, const helios::vec2 &size)
Add new Disk geometric primitive to the Context given its center, and size.
Definition Context.cpp:6300
+
helios::Context::addBox
std::vector< uint > addBox(const vec3 &center, const vec3 &size, const int3 &subdiv)
Add a rectangular prism tessellated with Patch primitives.
Definition Context.cpp:6091
+
helios::Context::addBoxObject
uint addBoxObject(const vec3 &center, const vec3 &size, const int3 &subdiv)
Add a rectangular prism tessellated with Patch primitives.
Definition Context.cpp:4944
+
helios::Context::addPolymeshObject
uint addPolymeshObject(const std::vector< uint > &UUIDs)
Add new Polymesh Compound Object.
Definition Context.cpp:5343
+
helios::Context::addSphere
std::vector< uint > addSphere(uint Ndivs, const vec3 &center, float radius)
Add a spherical compound object to the Context.
Definition Context.cpp:5590
+
helios::Context::addTube
std::vector< uint > addTube(uint Ndivs, const std::vector< vec3 > &nodes, const std::vector< float > &radius)
Add a 3D tube compound object to the Context.
Definition Context.cpp:5874
+
helios::Context::addTile
std::vector< uint > addTile(const vec3 &center, const vec2 &size, const SphericalCoord &rotation, const int2 &subdiv)
Add a patch that is subdivided into a regular grid of sub-patches (tiled)
Definition Context.cpp:5753
+
helios::Context::addTileObject
uint addTileObject(const vec3 &center, const vec2 &size, const SphericalCoord &rotation, const int2 &subdiv)
Add a patch that is subdivided into a regular grid of sub-patches (tiled)
Definition Context.cpp:4512
+
helios::Context::addCone
std::vector< uint > addCone(uint Ndivs, const vec3 &node0, const vec3 &node1, float radius0, float radius1)
Add a 3D cone to the Context.
Definition Context.cpp:6403
+
helios::Context::addSphereObject
uint addSphereObject(uint Ndivs, const vec3 &center, float radius)
Add a spherical compound object to the Context.
Definition Context.cpp:4272
helios::min
float min(const std::vector< float > &vect)
Minimum value of a vector of floats.
Definition global.cpp:1018
helios::max
float max(const std::vector< float > &vect)
Maximum value of a vector of floats.
Definition global.cpp:1064
helios::sum
float sum(const std::vector< float > &vect)
Sum of a vector of floats.
Definition global.cpp:987
helios::mean
float mean(const std::vector< float > &vect)
Mean value of a vector of floats.
Definition global.cpp:1002
-
helios::Context::addTriangle
uint addTriangle(const helios::vec3 &vertex0, const helios::vec3 &vertex1, const helios::vec3 &vertex2)
Add new Triangle geometric primitive.
Definition Context.cpp:1323
-
helios::Context::getPrimitiveCount
uint getPrimitiveCount() const
Get the total number of Primitives in the Context.
Definition Context.cpp:1754
-
helios::Context::addVoxel
uint addVoxel(const helios::vec3 &center, const helios::vec3 &size)
Add new Voxel geometric primitive.
Definition Context.cpp:1367
-
helios::Context::addPatch
uint addPatch()
Add new default Patch geometric primitive, which is centered at the origin (0,0,0),...
Definition Context.cpp:1207
-
helios::Context::setCurrentTimeseriesPoint
void setCurrentTimeseriesPoint(const char *label, uint index)
Set the Context date and time by providing the index of a timeseries data point.
Definition Context.cpp:1881
-
helios::Context::queryTimeseriesTime
Time queryTimeseriesTime(const char *label, uint index) const
Get the time associated with a timeseries data point.
Definition Context.cpp:1953
-
helios::Context::getTimeseriesLength
uint getTimeseriesLength(const char *label) const
Get the length of timeseries data.
Definition Context.cpp:2009
-
helios::Context::queryTimeseriesData
float queryTimeseriesData(const char *label, const Date &date, const Time &time) const
Get a timeseries data point by specifying a date and time vector.
Definition Context.cpp:1889
-
helios::Context::doesTimeseriesVariableExist
bool doesTimeseriesVariableExist(const char *label) const
Query whether a timeseries variable exists.
Definition Context.cpp:2021
-
helios::Context::addTimeseriesData
void addTimeseriesData(const char *label, float value, const Date &date, const Time &time)
Add a data point to timeseries of data.
Definition Context.cpp:1818
-
helios::Context::queryTimeseriesDate
Date queryTimeseriesDate(const char *label, uint index) const
Get the date associated with a timeseries data point.
Definition Context.cpp:1989
- +
helios::Context::addTriangle
uint addTriangle(const helios::vec3 &vertex0, const helios::vec3 &vertex1, const helios::vec3 &vertex2)
Add new Triangle geometric primitive.
Definition Context.cpp:1318
+
helios::Context::getPrimitiveCount
uint getPrimitiveCount() const
Get the total number of Primitives in the Context.
Definition Context.cpp:1749
+
helios::Context::addVoxel
uint addVoxel(const helios::vec3 &center, const helios::vec3 &size)
Add new Voxel geometric primitive.
Definition Context.cpp:1362
+
helios::Context::addPatch
uint addPatch()
Add new default Patch geometric primitive, which is centered at the origin (0,0,0),...
Definition Context.cpp:1202
+
helios::Context::setCurrentTimeseriesPoint
void setCurrentTimeseriesPoint(const char *label, uint index)
Set the Context date and time by providing the index of a timeseries data point.
Definition Context.cpp:1876
+
helios::Context::queryTimeseriesTime
Time queryTimeseriesTime(const char *label, uint index) const
Get the time associated with a timeseries data point.
Definition Context.cpp:1948
+
helios::Context::getTimeseriesLength
uint getTimeseriesLength(const char *label) const
Get the length of timeseries data.
Definition Context.cpp:2004
+
helios::Context::queryTimeseriesData
float queryTimeseriesData(const char *label, const Date &date, const Time &time) const
Get a timeseries data point by specifying a date and time vector.
Definition Context.cpp:1884
+
helios::Context::doesTimeseriesVariableExist
bool doesTimeseriesVariableExist(const char *label) const
Query whether a timeseries variable exists.
Definition Context.cpp:2016
+
helios::Context::addTimeseriesData
void addTimeseriesData(const char *label, float value, const Date &date, const Time &time)
Add a data point to timeseries of data.
Definition Context.cpp:1813
+
helios::Context::queryTimeseriesDate
Date queryTimeseriesDate(const char *label, uint index) const
Get the date associated with a timeseries data point.
Definition Context.cpp:1984
+
helios::GlobalData
Structure for Global Data Entities.
Definition Context.h:102
-
helios::RGBAcolor
R-G-B-A color vector.
Definition helios_vector_types.h:1021
-
helios::RGBcolor
R-G-B color vector.
Definition helios_vector_types.h:841
-
helios::SphericalCoord
Vector of spherical coordinates (elevation,azimuth)
Definition helios_vector_types.h:1468
- +
helios::RGBAcolor
R-G-B-A color vector.
Definition helios_vector_types.h:1024
+
helios::RGBcolor
R-G-B color vector.
Definition helios_vector_types.h:844
+
helios::SphericalCoord
Vector of spherical coordinates (elevation,azimuth)
Definition helios_vector_types.h:1471
+
helios::int2
Vector of two elements of type 'int'.
Definition helios_vector_types.h:44
helios::int3
Vector of three elements of type 'int'.
Definition helios_vector_types.h:146
helios::int4
Vector of four elements of type 'int'.
Definition helios_vector_types.h:243
helios::vec2
Vector of two elements of type 'float'.
Definition helios_vector_types.h:346
-
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:502
-
helios::vec4
Vector of four elements of type 'float'.
Definition helios_vector_types.h:671
+
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:503
+
helios::vec4
Vector of four elements of type 'float'.
Definition helios_vector_types.h:673
diff --git a/doc/html/_context__data_8cpp.html b/doc/html/_context__data_8cpp.html index 755cae494..7f1d747b2 100644 --- a/doc/html/_context__data_8cpp.html +++ b/doc/html/_context__data_8cpp.html @@ -38,7 +38,7 @@
diff --git a/doc/html/_context__data_8cpp_source.html b/doc/html/_context__data_8cpp_source.html index d95a76d27..1b1bc06ad 100644 --- a/doc/html/_context__data_8cpp_source.html +++ b/doc/html/_context__data_8cpp_source.html @@ -38,7 +38,7 @@ @@ -5077,95 +5077,108 @@
4446
-
4447bool Context::doesGlobalDataExist( const char* label ) const{
+
4447std::vector<std::string> Context::listGlobalData() const{
4448
-
4449 if( globaldata.find(label) == globaldata.end() ){
-
4450 return false;
-
4451 }else{
-
4452 return true;
-
4453 }
+
4449 std::vector<std::string> labels;
+
4450 labels.reserve(globaldata.size());
+
4451 for( auto it=globaldata.begin(); it!=globaldata.end(); it++ ){
+
4452 labels.push_back(it->first);
+
4453 }
4454
-
4455}
-
-
4456
-
-
4457void Context::incrementGlobalData( const char* label, int increment ){
-
4458
-
4459 if( !doesGlobalDataExist( label ) ){
-
4460 helios_runtime_error("ERROR (Context::incrementGlobalData): Global data " + std::string(label) + " does not exist in the Context.");
-
4461 }
-
4462
-
4463 uint size = getGlobalDataSize(label);
-
4464
-
4465 if( globaldata.at(label).type==HELIOS_TYPE_INT ) {
-
4466 for (uint i = 0; i < size; i++) {
-
4467 globaldata.at(label).global_data_int.at(i) += increment;
-
4468 }
-
4469 }else{
-
4470 std::cerr << "WARNING (Context::incrementGlobalData): Attempted to increment global data for type int, but data '" << label << "' does not have type int." << std::endl;
-
4471 }
-
4472
-
4473}
-
-
4474
-
-
4475void Context::incrementGlobalData( const char* label, uint increment ){
-
4476
-
4477 if( !doesGlobalDataExist( label ) ){
-
4478 helios_runtime_error("ERROR (Context::incrementGlobalData): Global data " + std::string(label) + " does not exist in the Context.");
-
4479 }
-
4480
-
4481 uint size = getGlobalDataSize(label);
-
4482
-
4483 if( globaldata.at(label).type==HELIOS_TYPE_UINT ) {
-
4484 for (uint i = 0; i < size; i++) {
-
4485 globaldata.at(label).global_data_uint.at(i) += increment;
-
4486 }
-
4487 }else{
-
4488 std::cerr << "WARNING (Context::incrementGlobalData): Attempted to increment global data for type uint, but data '" << label << "' does not have type uint." << std::endl;
-
4489 }
-
4490
-
4491}
-
-
4492
-
-
4493void Context::incrementGlobalData( const char* label, float increment ){
-
4494
-
4495 if( !doesGlobalDataExist( label ) ){
-
4496 helios_runtime_error("ERROR (Context::incrementGlobalData): Global data " + std::string(label) + " does not exist in the Context.");
-
4497 }
-
4498
-
4499 uint size = getGlobalDataSize(label);
-
4500
-
4501 if( globaldata.at(label).type==HELIOS_TYPE_FLOAT ) {
-
4502 for (uint i = 0; i < size; i++) {
-
4503 globaldata.at(label).global_data_float.at(i) += increment;
-
4504 }
-
4505 }else{
-
4506 std::cerr << "WARNING (Context::incrementGlobalData): Attempted to increment global data for type float, but data '" << label << "' does not have type float." << std::endl;
-
4507 }
-
4508
-
4509}
-
-
4510
-
-
4511void Context::incrementGlobalData( const char* label, double increment ){
-
4512
-
4513 if( !doesGlobalDataExist( label ) ){
-
4514 helios_runtime_error("ERROR (Context::incrementGlobalData): Global data " + std::string(label) + " does not exist in the Context.");
-
4515 }
-
4516
-
4517 uint size = getGlobalDataSize(label);
-
4518
-
4519 if( globaldata.at(label).type==HELIOS_TYPE_DOUBLE ) {
-
4520 for (uint i = 0; i < size; i++) {
-
4521 globaldata.at(label).global_data_double.at(i) += increment;
-
4522 }
-
4523 }else{
-
4524 std::cerr << "WARNING (Context::incrementGlobalData): Attempted to increment global data for type double, but data '" << label << "' does not have type double." << std::endl;
-
4525 }
-
4526
-
4527}
+
4455 return labels;
+
4456}
+
+
4457
+
+
4458bool Context::doesGlobalDataExist( const char* label ) const{
+
4459
+
4460 if( globaldata.find(label) == globaldata.end() ){
+
4461 return false;
+
4462 }else{
+
4463 return true;
+
4464 }
+
4465
+
4466}
+
+
4467
+
+
4468void Context::incrementGlobalData( const char* label, int increment ){
+
4469
+
4470 if( !doesGlobalDataExist( label ) ){
+
4471 helios_runtime_error("ERROR (Context::incrementGlobalData): Global data " + std::string(label) + " does not exist in the Context.");
+
4472 }
+
4473
+
4474 uint size = getGlobalDataSize(label);
+
4475
+
4476 if( globaldata.at(label).type==HELIOS_TYPE_INT ) {
+
4477 for (uint i = 0; i < size; i++) {
+
4478 globaldata.at(label).global_data_int.at(i) += increment;
+
4479 }
+
4480 }else{
+
4481 std::cerr << "WARNING (Context::incrementGlobalData): Attempted to increment global data for type int, but data '" << label << "' does not have type int." << std::endl;
+
4482 }
+
4483
+
4484}
+
+
4485
+
+
4486void Context::incrementGlobalData( const char* label, uint increment ){
+
4487
+
4488 if( !doesGlobalDataExist( label ) ){
+
4489 helios_runtime_error("ERROR (Context::incrementGlobalData): Global data " + std::string(label) + " does not exist in the Context.");
+
4490 }
+
4491
+
4492 uint size = getGlobalDataSize(label);
+
4493
+
4494 if( globaldata.at(label).type==HELIOS_TYPE_UINT ) {
+
4495 for (uint i = 0; i < size; i++) {
+
4496 globaldata.at(label).global_data_uint.at(i) += increment;
+
4497 }
+
4498 }else{
+
4499 std::cerr << "WARNING (Context::incrementGlobalData): Attempted to increment global data for type uint, but data '" << label << "' does not have type uint." << std::endl;
+
4500 }
+
4501
+
4502}
+
+
4503
+
+
4504void Context::incrementGlobalData( const char* label, float increment ){
+
4505
+
4506 if( !doesGlobalDataExist( label ) ){
+
4507 helios_runtime_error("ERROR (Context::incrementGlobalData): Global data " + std::string(label) + " does not exist in the Context.");
+
4508 }
+
4509
+
4510 uint size = getGlobalDataSize(label);
+
4511
+
4512 if( globaldata.at(label).type==HELIOS_TYPE_FLOAT ) {
+
4513 for (uint i = 0; i < size; i++) {
+
4514 globaldata.at(label).global_data_float.at(i) += increment;
+
4515 }
+
4516 }else{
+
4517 std::cerr << "WARNING (Context::incrementGlobalData): Attempted to increment global data for type float, but data '" << label << "' does not have type float." << std::endl;
+
4518 }
+
4519
+
4520}
+
+
4521
+
+
4522void Context::incrementGlobalData( const char* label, double increment ){
+
4523
+
4524 if( !doesGlobalDataExist( label ) ){
+
4525 helios_runtime_error("ERROR (Context::incrementGlobalData): Global data " + std::string(label) + " does not exist in the Context.");
+
4526 }
+
4527
+
4528 uint size = getGlobalDataSize(label);
+
4529
+
4530 if( globaldata.at(label).type==HELIOS_TYPE_DOUBLE ) {
+
4531 for (uint i = 0; i < size; i++) {
+
4532 globaldata.at(label).global_data_double.at(i) += increment;
+
4533 }
+
4534 }else{
+
4535 std::cerr << "WARNING (Context::incrementGlobalData): Attempted to increment global data for type double, but data '" << label << "' does not have type double." << std::endl;
+
4536 }
+
4537
+
4538}
helios::HeliosDataType
HeliosDataType
Data types.
Definition Context.h:41
@@ -5189,7 +5202,7 @@
helios::CompoundObject::setObjectData
void setObjectData(const char *label, const int &data)
Add data value (int) associated with a object element.
Definition Context_data.cpp:3012
helios::Context::copyPrimitiveData
void copyPrimitiveData(uint sourceUUID, uint destinationUUID)
copy all primitive data from one primitive to another
Definition Context_data.cpp:1192
helios::Context::scalePrimitiveData
void scalePrimitiveData(const std::vector< uint > &UUIDs, const std::string &label, float scaling_factor)
Multiply primitive data values by a constant scaling factor for a subset of primitives.
Definition Context_data.cpp:1747
-
helios::Context::getPrimitiveArea
float getPrimitiveArea(uint UUID) const
Method to return the surface area of a Primitive.
Definition Context.cpp:6930
+
helios::Context::getPrimitiveArea
float getPrimitiveArea(uint UUID) const
Method to return the surface area of a Primitive.
Definition Context.cpp:6997
helios::Context::getPrimitiveData
void getPrimitiveData(uint UUID, const char *label, int &data) const
Get data associated with a primitive element.
Definition Context_data.cpp:1001
helios::Context::doesObjectDataExist
bool doesObjectDataExist(uint objID, const char *label) const
Check if primitive data 'label' exists.
Definition Context_data.cpp:2908
helios::Context::getObjectData
void getObjectData(uint objID, const char *label, int &data) const
Get data associated with a compound object.
Definition Context_data.cpp:2740
@@ -5199,8 +5212,8 @@
helios::Context::incrementPrimitiveData
void incrementPrimitiveData(const std::vector< uint > &UUIDs, const char *label, int increment)
Increase value of primitive data (int) by some value.
Definition Context_data.cpp:1805
helios::Context::renamePrimitiveData
void renamePrimitiveData(uint UUID, const char *old_label, const char *new_label)
Rename primitive data for a primitive.
Definition Context_data.cpp:1216
helios::Context::duplicateObjectData
void duplicateObjectData(uint objID, const char *old_label, const char *new_label)
Duplicate/copy existing object data.
Definition Context_data.cpp:2939
-
helios::Context::filterObjectsByData
std::vector< uint > filterObjectsByData(const std::vector< uint > &ObjIDs, const char *object_data, float threshold, const char *comparator) const
Get a vector of object IDs that meet filtering criteria based on object data.
Definition Context.cpp:2735
-
helios::Context::doesGlobalDataExist
bool doesGlobalDataExist(const char *label) const
Check if global data 'label' exists.
Definition Context_data.cpp:4447
+
helios::Context::filterObjectsByData
std::vector< uint > filterObjectsByData(const std::vector< uint > &ObjIDs, const char *object_data, float threshold, const char *comparator) const
Get a vector of object IDs that meet filtering criteria based on object data.
Definition Context.cpp:2730
+
helios::Context::doesGlobalDataExist
bool doesGlobalDataExist(const char *label) const
Check if global data 'label' exists.
Definition Context_data.cpp:4458
helios::Context::aggregatePrimitiveDataProduct
void aggregatePrimitiveDataProduct(const std::vector< uint > &UUIDs, const std::vector< std::string > &primitive_data_labels, const std::string &result_primitive_data_label)
Multiply primitive data values for each primitive together and store result in new primitive data.
Definition Context_data.cpp:2025
helios::Context::setObjectData
void setObjectData(uint objID, const char *label, const int &data)
Add data value (int) associated with a compound object.
Definition Context_data.cpp:2392
helios::Context::clearObjectData
void clearObjectData(uint objID, const char *label)
Clear primitive data for a single primitive based on its objID.
Definition Context_data.cpp:2992
@@ -5212,7 +5225,7 @@
helios::Context::getGlobalDataType
HeliosDataType getGlobalDataType(const char *label) const
Get the Helios data type of global data.
Definition Context_data.cpp:4427
helios::Context::getGlobalDataSize
size_t getGlobalDataSize(const char *label) const
Get the size/length of global data.
Definition Context_data.cpp:4437
helios::Context::getGlobalData
void getGlobalData(const char *label, int &data) const
Get global data value (scalar integer)
Definition Context_data.cpp:4053
-
helios::Context::getAllUUIDs
std::vector< uint > getAllUUIDs() const
Get all primitive UUIDs currently in the Context.
Definition Context.cpp:1758
+
helios::Context::getAllUUIDs
std::vector< uint > getAllUUIDs() const
Get all primitive UUIDs currently in the Context.
Definition Context.cpp:1753
helios::Context::getPrimitiveDataType
HeliosDataType getPrimitiveDataType(uint UUID, const char *label) const
Get the Helios data type of primitive data.
Definition Context_data.cpp:1155
helios::Context::clearGlobalData
void clearGlobalData(const char *label)
Delete/clear global data.
Definition Context_data.cpp:4045
helios::Context::renameObjectData
void renameObjectData(uint objID, const char *old_label, const char *new_label)
Rename existing object data.
Definition Context_data.cpp:2979
@@ -5220,12 +5233,13 @@
helios::Context::aggregatePrimitiveDataSum
void aggregatePrimitiveDataSum(const std::vector< uint > &UUIDs, const std::vector< std::string > &primitive_data_labels, const std::string &result_primitive_data_label)
Sum multiple primitive data values for each primitive together and store result in new primitive data...
Definition Context_data.cpp:1893
helios::Context::getObjectDataSize
uint getObjectDataSize(uint objID, const char *label) const
Get the size/length of primitive data.
Definition Context_data.cpp:2901
helios::Context::calculatePrimitiveDataAreaWeightedSum
void calculatePrimitiveDataAreaWeightedSum(const std::vector< uint > &UUIDs, const std::string &label, float &awt_sum) const
Calculate sum of primitive data values (float) for a subset of primitives, where each value in the su...
Definition Context_data.cpp:1637
-
helios::Context::incrementGlobalData
void incrementGlobalData(const char *label, int increment)
Increase value of global data (int) by some value.
Definition Context_data.cpp:4457
+
helios::Context::incrementGlobalData
void incrementGlobalData(const char *label, int increment)
Increase value of global data (int) by some value.
Definition Context_data.cpp:4468
helios::Context::clearPrimitiveData
void clearPrimitiveData(uint UUID, const char *label)
Clear primitive data for a single primitive based on its UUID.
Definition Context_data.cpp:1176
helios::Context::setPrimitiveData
void setPrimitiveData(const uint &UUID, const char *label, const int &data)
Add data value (int) associated with a primitive element.
Definition Context_data.cpp:655
helios::Context::calculatePrimitiveDataAreaWeightedMean
void calculatePrimitiveDataAreaWeightedMean(const std::vector< uint > &UUIDs, const std::string &label, float &awt_mean) const
Calculate mean of primitive data values (float) for a subset of primitives, where each value in the m...
Definition Context_data.cpp:1413
-
helios::Context::doesPrimitiveExist
bool doesPrimitiveExist(uint UUID) const
Check if primitive exists for a given UUID.
Definition Context.cpp:1654
+
helios::Context::doesPrimitiveExist
bool doesPrimitiveExist(uint UUID) const
Check if primitive exists for a given UUID.
Definition Context.cpp:1649
helios::Context::listObjectData
std::vector< std::string > listObjectData(uint ObjID) const
Return labels for all object data for this particular object.
Definition Context_data.cpp:3008
+
helios::Context::listGlobalData
std::vector< std::string > listGlobalData() const
List the labels for all global data in the Context.
Definition Context_data.cpp:4447
helios::Context::copyObjectData
void copyObjectData(uint source_objID, uint destination_objID)
copy all object data from one compound object to another
Definition Context_data.cpp:2915
helios::Context::duplicateGlobalData
void duplicateGlobalData(const char *old_label, const char *new_label)
Make a copy of global data.
Definition Context_data.cpp:3987
helios::Context::getObjectDataType
HeliosDataType getObjectDataType(uint objID, const char *label) const
Get the Helios data type of primitive data.
Definition Context_data.cpp:2894
@@ -5234,10 +5248,10 @@
helios::sum
float sum(const std::vector< float > &vect)
Sum of a vector of floats.
Definition global.cpp:987
helios::mean
float mean(const std::vector< float > &vect)
Mean value of a vector of floats.
Definition global.cpp:1002
helios::make_int2
int2 make_int2(int x, int y)
Make an int2 vector from two ints.
Definition helios_vector_types.h:99
-
helios::make_vec2
vec2 make_vec2(float x, float y)
Make a vec2 from two floats.
Definition helios_vector_types.h:432
+
helios::make_vec2
vec2 make_vec2(float x, float y)
Make a vec2 from two floats.
Definition helios_vector_types.h:433
helios::make_int3
int3 make_int3(int X, int Y, int Z)
Make an int3 vector from three ints.
Definition helios_vector_types.h:198
-
helios::make_vec3
vec3 make_vec3(float x, float y, float z)
Make a vec3 from three floats.
Definition helios_vector_types.h:587
-
helios::make_vec4
vec4 make_vec4(float x, float y, float z, float w)
Make a vec4 from three floats.
Definition helios_vector_types.h:760
+
helios::make_vec3
vec3 make_vec3(float x, float y, float z)
Make a vec3 from three floats.
Definition helios_vector_types.h:589
+
helios::make_vec4
vec4 make_vec4(float x, float y, float z, float w)
Make a vec4 from three floats.
Definition helios_vector_types.h:763
helios::make_int4
int4 make_int4(int x, int y, int z, int w)
Make an int4 vector from three ints.
Definition helios_vector_types.h:299
helios::GlobalData
Structure for Global Data Entities.
Definition Context.h:102
helios::int2
Vector of two elements of type 'int'.
Definition helios_vector_types.h:44
@@ -5255,15 +5269,15 @@
helios::vec2
Vector of two elements of type 'float'.
Definition helios_vector_types.h:346
helios::vec2::x
float x
First element in vector.
Definition helios_vector_types.h:350
helios::vec2::y
float y
Second element in vector.
Definition helios_vector_types.h:352
-
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:502
-
helios::vec3::x
float x
First element in vector.
Definition helios_vector_types.h:506
-
helios::vec3::z
float z
Third element in vector.
Definition helios_vector_types.h:510
-
helios::vec3::y
float y
Second element in vector.
Definition helios_vector_types.h:508
-
helios::vec4
Vector of four elements of type 'float'.
Definition helios_vector_types.h:671
-
helios::vec4::y
float y
Second element in vector.
Definition helios_vector_types.h:677
-
helios::vec4::w
float w
Fourth element in vector.
Definition helios_vector_types.h:681
-
helios::vec4::z
float z
Third element in vector.
Definition helios_vector_types.h:679
-
helios::vec4::x
float x
First element in vector.
Definition helios_vector_types.h:675
+
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:503
+
helios::vec3::x
float x
First element in vector.
Definition helios_vector_types.h:507
+
helios::vec3::z
float z
Third element in vector.
Definition helios_vector_types.h:511
+
helios::vec3::y
float y
Second element in vector.
Definition helios_vector_types.h:509
+
helios::vec4
Vector of four elements of type 'float'.
Definition helios_vector_types.h:673
+
helios::vec4::y
float y
Second element in vector.
Definition helios_vector_types.h:679
+
helios::vec4::w
float w
Fourth element in vector.
Definition helios_vector_types.h:683
+
helios::vec4::z
float z
Third element in vector.
Definition helios_vector_types.h:681
+
helios::vec4::x
float x
First element in vector.
Definition helios_vector_types.h:677
diff --git a/doc/html/_context__file_i_o_8cpp.html b/doc/html/_context__file_i_o_8cpp.html index 4916f6d78..b24b6591e 100644 --- a/doc/html/_context__file_i_o_8cpp.html +++ b/doc/html/_context__file_i_o_8cpp.html @@ -38,7 +38,7 @@
diff --git a/doc/html/_context__file_i_o_8cpp_source.html b/doc/html/_context__file_i_o_8cpp_source.html index 82512c5ed..a8376fb75 100644 --- a/doc/html/_context__file_i_o_8cpp_source.html +++ b/doc/html/_context__file_i_o_8cpp_source.html @@ -38,7 +38,7 @@ @@ -4465,8 +4465,8 @@
4292 std::string texture = materials.at(mat).texture;
4293 if( !texture.empty() && std::filesystem::exists(texture) ) {
4294 auto file = std::filesystem::path(texture).filename();
-
4295 std::filesystem::copy_file( texture, texture_dir + std::string(file), std::filesystem::copy_options::overwrite_existing );
-
4296 materials.at(mat).texture = std::string(file);
+
4295 std::filesystem::copy_file( texture, texture_dir + file.string(), std::filesystem::copy_options::overwrite_existing );
+
4296 materials.at(mat).texture = file.string();
4297 }
4298 }
4299
@@ -5029,82 +5029,82 @@
helios::OBJECT_TYPE_TILE
@ OBJECT_TYPE_TILE
< Tile
Definition Context.h:130
helios::OBJECT_TYPE_SPHERE
@ OBJECT_TYPE_SPHERE
< Sphere
Definition Context.h:132
helios::Box
Box compound object class.
Definition Context.h:759
-
helios::Box::getSubdivisionCount
helios::int3 getSubdivisionCount() const
Get the number of sub-patch divisions of the box object in each Cartesian direction.
Definition Context.cpp:3906
-
helios::Box::getCenter
vec3 getCenter() const
Get the Cartesian coordinates of the center of the box object.
Definition Context.cpp:3890
-
helios::Box::getSize
vec3 getSize() const
Get the dimensions of the box object in each Cartesian direction.
Definition Context.cpp:3871
+
helios::Box::getSubdivisionCount
helios::int3 getSubdivisionCount() const
Get the number of sub-patch divisions of the box object in each Cartesian direction.
Definition Context.cpp:3958
+
helios::Box::getCenter
vec3 getCenter() const
Get the Cartesian coordinates of the center of the box object.
Definition Context.cpp:3942
+
helios::Box::getSize
vec3 getSize() const
Get the dimensions of the box object in each Cartesian direction.
Definition Context.cpp:3923
-
helios::CompoundObject::setPrimitiveUUIDs
void setPrimitiveUUIDs(const std::vector< uint > &UUIDs)
Method to set the UUIDs of object child primitives.
Definition Context.cpp:2502
-
helios::CompoundObject::getTextureFile
std::string getTextureFile() const
Method to return the texture map file of an Object.
Definition Context.cpp:2334
+
helios::CompoundObject::setPrimitiveUUIDs
void setPrimitiveUUIDs(const std::vector< uint > &UUIDs)
Method to set the UUIDs of object child primitives.
Definition Context.cpp:2497
+
helios::CompoundObject::getTextureFile
std::string getTextureFile() const
Method to return the texture map file of an Object.
Definition Context.cpp:2329
helios::CompoundObject::listObjectData
std::vector< std::string > listObjectData() const
Return labels for all object data for this particular object.
Definition Context_data.cpp:3587
-
helios::CompoundObject::hasTexture
bool hasTexture() const
Method to check whether this object has texture data.
Definition Context.cpp:2326
-
helios::CompoundObject::setTransformationMatrix
void setTransformationMatrix(float(&T)[16])
Method to set the Affine transformation matrix of a Compound Object.
Definition Context.cpp:2494
-
helios::CompoundObject::getObjectType
helios::ObjectType getObjectType() const
Get an enumeration specifying the type of the object.
Definition Context.cpp:2232
-
helios::CompoundObject::getPrimitiveUUIDs
std::vector< uint > getPrimitiveUUIDs() const
Get the UUIDs for all primitives contained in the object.
Definition Context.cpp:2241
-
helios::CompoundObject::getTransformationMatrix
void getTransformationMatrix(float(&T)[16]) const
Method to return the Affine transformation matrix of a Compound Object.
Definition Context.cpp:2488
+
helios::CompoundObject::hasTexture
bool hasTexture() const
Method to check whether this object has texture data.
Definition Context.cpp:2321
+
helios::CompoundObject::setTransformationMatrix
void setTransformationMatrix(float(&T)[16])
Method to set the Affine transformation matrix of a Compound Object.
Definition Context.cpp:2489
+
helios::CompoundObject::getObjectType
helios::ObjectType getObjectType() const
Get an enumeration specifying the type of the object.
Definition Context.cpp:2227
+
helios::CompoundObject::getPrimitiveUUIDs
std::vector< uint > getPrimitiveUUIDs() const
Get the UUIDs for all primitives contained in the object.
Definition Context.cpp:2236
+
helios::CompoundObject::getTransformationMatrix
void getTransformationMatrix(float(&T)[16]) const
Method to return the Affine transformation matrix of a Compound Object.
Definition Context.cpp:2483
helios::Cone
Cone compound object class.
Definition Context.h:847
-
helios::Cone::getSubdivisionCount
uint getSubdivisionCount() const
Get the number of sub-triangle divisions of the cone object.
Definition Context.cpp:4081
-
helios::Cone::getNodeCoordinates
std::vector< helios::vec3 > getNodeCoordinates() const
Get the Cartesian coordinates of each of the cone object nodes.
Definition Context.cpp:4040
-
helios::Cone::getNodeRadii
std::vector< float > getNodeRadii() const
Get the radius at each of the cone object nodes.
Definition Context.cpp:4069
-
helios::Context::setPrimitiveColor
void setPrimitiveColor(uint UUID, const helios::RGBcolor &color)
Method to set the diffuse color of a Primitive.
Definition Context.cpp:7016
+
helios::Cone::getSubdivisionCount
uint getSubdivisionCount() const
Get the number of sub-triangle divisions of the cone object.
Definition Context.cpp:4133
+
helios::Cone::getNodeCoordinates
std::vector< helios::vec3 > getNodeCoordinates() const
Get the Cartesian coordinates of each of the cone object nodes.
Definition Context.cpp:4092
+
helios::Cone::getNodeRadii
std::vector< float > getNodeRadii() const
Get the radius at each of the cone object nodes.
Definition Context.cpp:4121
+
helios::Context::setPrimitiveColor
void setPrimitiveColor(uint UUID, const helios::RGBcolor &color)
Method to set the diffuse color of a Primitive.
Definition Context.cpp:7083
helios::Context::loadPLY
std::vector< uint > loadPLY(const char *filename, bool silent=false)
Load geometry contained in a Stanford polygon file (.ply). Model will be placed at the origin with no...
Definition Context_fileIO.cpp:3370
helios::Context::loadXML
std::vector< uint > loadXML(const char *filename, bool quiet=false)
Load inputs specified in an XML file.
Definition Context_fileIO.cpp:1217
-
helios::Context::getDiskObjectPointer
Disk * getDiskObjectPointer(uint ObjID) const
Get a pointer to a Disk Compound Object.
Definition Context.cpp:3932
-
helios::Context::getUniquePrimitiveParentObjectIDs
std::vector< uint > getUniquePrimitiveParentObjectIDs(const std::vector< uint > &UUIDs) const
Method to return unique parent object IDs for a vector of primitive UUIDs.
Definition Context.cpp:6899
+
helios::Context::getDiskObjectPointer
Disk * getDiskObjectPointer(uint ObjID) const
Get a pointer to a Disk Compound Object.
Definition Context.cpp:3984
+
helios::Context::getUniquePrimitiveParentObjectIDs
std::vector< uint > getUniquePrimitiveParentObjectIDs(const std::vector< uint > &UUIDs) const
Method to return unique parent object IDs for a vector of primitive UUIDs.
Definition Context.cpp:6966
helios::Context::loadTabularTimeseriesData
void loadTabularTimeseriesData(const std::string &data_file, const std::vector< std::string > &column_labels, const std::string &delimiter, const std::string &date_string_format="YYYYMMDD", uint headerlines=0)
Load tabular weather data from text file into timeseries.
Definition Context_fileIO.cpp:4544
-
helios::Context::getBoxObjectPointer
Box * getBoxObjectPointer(uint ObjID) const
Get a pointer to a Box Compound Object.
Definition Context.cpp:3864
+
helios::Context::getBoxObjectPointer
Box * getBoxObjectPointer(uint ObjID) const
Get a pointer to a Box Compound Object.
Definition Context.cpp:3916
helios::Context::getPrimitiveData
void getPrimitiveData(uint UUID, const char *label, int &data) const
Get data associated with a primitive element.
Definition Context_data.cpp:1001
-
helios::Context::deletePrimitive
void deletePrimitive(uint UUID)
Delete a single primitive from the context.
Definition Context.cpp:1531
-
helios::Context::getConeObjectPointer
Cone * getConeObjectPointer(uint ObjID) const
Get a pointer to a Cone Compound Object.
Definition Context.cpp:4033
-
helios::Context::getObjectPointer
CompoundObject * getObjectPointer(uint ObjID) const
Get a pointer to a Compound Object.
Definition Context.cpp:2559
+
helios::Context::deletePrimitive
void deletePrimitive(uint UUID)
Delete a single primitive from the context.
Definition Context.cpp:1526
+
helios::Context::getConeObjectPointer
Cone * getConeObjectPointer(uint ObjID) const
Get a pointer to a Cone Compound Object.
Definition Context.cpp:4085
+
helios::Context::getObjectPointer
CompoundObject * getObjectPointer(uint ObjID) const
Get a pointer to a Compound Object.
Definition Context.cpp:2554
helios::Context::getLoadedXMLFiles
std::vector< std::string > getLoadedXMLFiles()
Get names of XML files that are currently loaded.
Definition Context_fileIO.cpp:2399
-
helios::Context::setDate
void setDate(int day, int month, int year)
Set simulation date by day, month, year.
Definition Context.cpp:1062
-
helios::Context::setPrimitiveParentObjectID
void setPrimitiveParentObjectID(uint UUID, uint objID)
Method to set the ID of the parent object the primitive belongs to (default is object 0)
Definition Context.cpp:6865
-
helios::Context::primitiveTextureHasTransparencyChannel
bool primitiveTextureHasTransparencyChannel(uint UUID) const
Check if primitive texture map has a transparency channel.
Definition Context.cpp:7056
-
helios::Context::getPrimitiveType
PrimitiveType getPrimitiveType(uint UUID) const
Method to get the Primitive type.
Definition Context.cpp:6861
+
helios::Context::setDate
void setDate(int day, int month, int year)
Set simulation date by day, month, year.
Definition Context.cpp:1057
+
helios::Context::setPrimitiveParentObjectID
void setPrimitiveParentObjectID(uint UUID, uint objID)
Method to set the ID of the parent object the primitive belongs to (default is object 0)
Definition Context.cpp:6932
+
helios::Context::primitiveTextureHasTransparencyChannel
bool primitiveTextureHasTransparencyChannel(uint UUID) const
Check if primitive texture map has a transparency channel.
Definition Context.cpp:7123
+
helios::Context::getPrimitiveType
PrimitiveType getPrimitiveType(uint UUID) const
Method to get the Primitive type.
Definition Context.cpp:6928
helios::Context::setObjectData
void setObjectData(uint objID, const char *label, const int &data)
Add data value (int) associated with a compound object.
Definition Context_data.cpp:2392
-
helios::Context::getPrimitiveSolidFraction
float getPrimitiveSolidFraction(uint UUID) const
Get fraction of primitive surface area that is non-transparent.
Definition Context.cpp:7098
+
helios::Context::getPrimitiveSolidFraction
float getPrimitiveSolidFraction(uint UUID) const
Get fraction of primitive surface area that is non-transparent.
Definition Context.cpp:7165
helios::Context::doesPrimitiveDataExist
bool doesPrimitiveDataExist(uint UUID, const char *label) const
Check if primitive data 'label' exists.
Definition Context_data.cpp:1169
-
helios::Context::getObjectPrimitiveUUIDs
std::vector< uint > getObjectPrimitiveUUIDs(uint ObjID) const
Get primitive UUIDs associated with compound object (single object ID input)
Definition Context.cpp:2892
+
helios::Context::getObjectPrimitiveUUIDs
std::vector< uint > getObjectPrimitiveUUIDs(uint ObjID) const
Get primitive UUIDs associated with compound object (single object ID input)
Definition Context.cpp:2887
helios::Context::writeOBJ
void writeOBJ(const std::string &filename) const
Write geometry in the Context to a Wavefront file (.obj)
Definition Context_fileIO.cpp:4123
-
helios::Context::getTime
helios::Time getTime() const
Get the simulation time.
Definition Context.cpp:1169
+
helios::Context::getTime
helios::Time getTime() const
Get the simulation time.
Definition Context.cpp:1164
helios::Context::loadOBJ
std::vector< uint > loadOBJ(const char *filename, bool silent=false)
Load geometry contained in a Wavefront OBJ file (.obj). Model will be placed at the origin without an...
Definition Context_fileIO.cpp:3734
-
helios::Context::getSphereObjectPointer
Sphere * getSphereObjectPointer(uint ObjID) const
Get a pointer to a Sphere Compound Object.
Definition Context.cpp:3395
-
helios::Context::overridePrimitiveTextureColor
void overridePrimitiveTextureColor(uint UUID)
Override the color in the texture map for all primitives in the Compound Object, in which case the pr...
Definition Context.cpp:7074
+
helios::Context::getSphereObjectPointer
Sphere * getSphereObjectPointer(uint ObjID) const
Get a pointer to a Sphere Compound Object.
Definition Context.cpp:3390
+
helios::Context::overridePrimitiveTextureColor
void overridePrimitiveTextureColor(uint UUID)
Override the color in the texture map for all primitives in the Compound Object, in which case the pr...
Definition Context.cpp:7141
helios::Context::getGlobalDataType
HeliosDataType getGlobalDataType(const char *label) const
Get the Helios data type of global data.
Definition Context_data.cpp:4427
-
helios::Context::getDate
helios::Date getDate() const
Get simulation date.
Definition Context.cpp:1102
+
helios::Context::getDate
helios::Date getDate() const
Get simulation date.
Definition Context.cpp:1097
helios::Context::getGlobalDataSize
size_t getGlobalDataSize(const char *label) const
Get the size/length of global data.
Definition Context_data.cpp:4437
helios::Context::getGlobalData
void getGlobalData(const char *label, int &data) const
Get global data value (scalar integer)
Definition Context_data.cpp:4053
-
helios::Context::getAllUUIDs
std::vector< uint > getAllUUIDs() const
Get all primitive UUIDs currently in the Context.
Definition Context.cpp:1758
-
helios::Context::doesObjectExist
bool doesObjectExist(uint ObjID) const
Check whether Compound Object exists in the Context.
Definition Context.cpp:2570
+
helios::Context::getAllUUIDs
std::vector< uint > getAllUUIDs() const
Get all primitive UUIDs currently in the Context.
Definition Context.cpp:1753
+
helios::Context::doesObjectExist
bool doesObjectExist(uint ObjID) const
Check whether Compound Object exists in the Context.
Definition Context.cpp:2565
helios::Context::getPrimitiveDataType
HeliosDataType getPrimitiveDataType(uint UUID, const char *label) const
Get the Helios data type of primitive data.
Definition Context_data.cpp:1155
helios::Context::writePLY
void writePLY(const char *filename) const
Write geometry in the Context to a Stanford polygon file (.ply)
Definition Context_fileIO.cpp:3670
helios::Context::setGlobalData
void setGlobalData(const char *label, const int &data)
Add global data value (int)
Definition Context_data.cpp:3769
-
helios::Context::isPrimitiveTextureColorOverridden
bool isPrimitiveTextureColorOverridden(uint UUID) const
Check if color of texture map is overridden by the diffuse R-G-B color of the primitive.
Definition Context.cpp:7094
-
helios::Context::getTubeObjectPointer
Tube * getTubeObjectPointer(uint ObjID) const
Get a pointer to a Tube Compound Object.
Definition Context.cpp:3471
+
helios::Context::isPrimitiveTextureColorOverridden
bool isPrimitiveTextureColorOverridden(uint UUID) const
Check if color of texture map is overridden by the diffuse R-G-B color of the primitive.
Definition Context.cpp:7161
+
helios::Context::getTubeObjectPointer
Tube * getTubeObjectPointer(uint ObjID) const
Get a pointer to a Tube Compound Object.
Definition Context.cpp:3466
helios::Context::writePrimitiveData
void writePrimitiveData(std::string filename, const std::vector< std::string > &column_format, bool print_header=false) const
Write primitive data to an ASCII text file for all primitives in the Context.
Definition Context_fileIO.cpp:4465
helios::Context::writeXML
void writeXML(const char *filename, bool quiet=false) const
Write Context geometry and data to XML file for all UUIDs in the context.
Definition Context_fileIO.cpp:2658
helios::Context::setPrimitiveData
void setPrimitiveData(const uint &UUID, const char *label, const int &data)
Add data value (int) associated with a primitive element.
Definition Context_data.cpp:655
-
helios::Context::doesPrimitiveExist
bool doesPrimitiveExist(uint UUID) const
Check if primitive exists for a given UUID.
Definition Context.cpp:1654
-
helios::Context::getTileObjectPointer
Tile * getTileObjectPointer(uint ObjID) const
Get a pointer to a Tile Compound Object.
Definition Context.cpp:3297
+
helios::Context::doesPrimitiveExist
bool doesPrimitiveExist(uint UUID) const
Check if primitive exists for a given UUID.
Definition Context.cpp:1649
+
helios::Context::getTileObjectPointer
Tile * getTileObjectPointer(uint ObjID) const
Get a pointer to a Tile Compound Object.
Definition Context.cpp:3292
helios::Context::scanXMLForTag
static bool scanXMLForTag(const std::string &filename, const std::string &tag, const std::string &label="")
Scan a Helios XML file to check if a tag exists.
Definition Context_fileIO.cpp:2403
helios::Context::writeXML_byobject
void writeXML_byobject(const char *filename, const std::vector< uint > &UUIDs, bool quiet=false) const
Write Context geometry and data to XML file for a subset of compound object IDs in the context.
Definition Context_fileIO.cpp:2662
-
helios::Context::setTime
void setTime(int minute, int hour)
Set simulation time.
Definition Context.cpp:1139
-
helios::Context::setPrimitiveTransformationMatrix
void setPrimitiveTransformationMatrix(uint UUID, float(&T)[16])
Method to set the Affine transformation matrix of a Primitive.
Definition Context.cpp:6989
+
helios::Context::setTime
void setTime(int minute, int hour)
Set simulation time.
Definition Context.cpp:1134
+
helios::Context::setPrimitiveTransformationMatrix
void setPrimitiveTransformationMatrix(uint UUID, float(&T)[16])
Method to set the Affine transformation matrix of a Primitive.
Definition Context.cpp:7056
helios::Disk
Disk compound object class.
Definition Context.h:795
-
helios::Disk::getSize
vec2 getSize() const
Get the lateral dimensions of the disk object.
Definition Context.cpp:3939
-
helios::Disk::getSubdivisionCount
int2 getSubdivisionCount() const
Get the number of sub-triangle divisions of the disk object.
Definition Context.cpp:3971
-
helios::Disk::getCenter
vec3 getCenter() const
Get the Cartesian coordinates of the center of the disk object.
Definition Context.cpp:3955
+
helios::Disk::getSize
vec2 getSize() const
Get the lateral dimensions of the disk object.
Definition Context.cpp:3991
+
helios::Disk::getSubdivisionCount
int2 getSubdivisionCount() const
Get the number of sub-triangle divisions of the disk object.
Definition Context.cpp:4023
+
helios::Disk::getCenter
vec3 getCenter() const
Get the Cartesian coordinates of the center of the disk object.
Definition Context.cpp:4007
helios::Sphere
Sphere compound object class.
Definition Context.h:624
-
helios::Sphere::getSubdivisionCount
uint getSubdivisionCount() const
Get the number of sub-patch divisions of the sphere object.
Definition Context.cpp:3440
-
helios::Sphere::getRadius
helios::vec3 getRadius() const
Get the radius of the sphere.
Definition Context.cpp:3402
-
helios::Sphere::getCenter
vec3 getCenter() const
Get the Cartesian coordinates of the center of the sphere object.
Definition Context.cpp:3424
+
helios::Sphere::getSubdivisionCount
uint getSubdivisionCount() const
Get the number of sub-patch divisions of the sphere object.
Definition Context.cpp:3435
+
helios::Sphere::getRadius
helios::vec3 getRadius() const
Get the radius of the sphere.
Definition Context.cpp:3397
+
helios::Sphere::getCenter
vec3 getCenter() const
Get the Cartesian coordinates of the center of the sphere object.
Definition Context.cpp:3419
helios::Tile
Tile compound object class.
Definition Context.h:581
-
helios::Tile::getSubdivisionCount
helios::int2 getSubdivisionCount() const
Get the number of sub-patch divisions of the tile.
Definition Context.cpp:3328
+
helios::Tile::getSubdivisionCount
helios::int2 getSubdivisionCount() const
Get the number of sub-patch divisions of the tile.
Definition Context.cpp:3323
helios::Tube
Tube compound object class.
Definition Context.h:660
-
helios::Tube::getNodeRadii
std::vector< float > getNodeRadii() const
Get the radius at each of the tube object nodes.
Definition Context.cpp:3493
-
helios::Tube::getNodeColors
std::vector< helios::RGBcolor > getNodeColors() const
Get the colors at each of the tube object nodes.
Definition Context.cpp:3510
-
helios::Tube::getNodes
std::vector< helios::vec3 > getNodes() const
Get the Cartesian coordinates of each of the tube object nodes.
Definition Context.cpp:3478
-
helios::Tube::getSubdivisionCount
uint getSubdivisionCount() const
Get the number of sub-triangle divisions of the tube object.
Definition Context.cpp:3518
+
helios::Tube::getNodeRadii
std::vector< float > getNodeRadii() const
Get the radius at each of the tube object nodes.
Definition Context.cpp:3488
+
helios::Tube::getNodeColors
std::vector< helios::RGBcolor > getNodeColors() const
Get the colors at each of the tube object nodes.
Definition Context.cpp:3505
+
helios::Tube::getNodes
std::vector< helios::vec3 > getNodes() const
Get the Cartesian coordinates of each of the tube object nodes.
Definition Context.cpp:3473
+
helios::Tube::getSubdivisionCount
uint getSubdivisionCount() const
Get the number of sub-triangle divisions of the tube object.
Definition Context.cpp:3513
helios::XMLparser::parse_data_vec3
static int parse_data_vec3(const pugi::xml_node &node_data, std::vector< vec3 > &data)
Parse vector data of type 'vec3' within an XML tag.
Definition Context_fileIO.cpp:154
helios::XMLparser::parse_data_int2
static int parse_data_int2(const pugi::xml_node &node_data, std::vector< int2 > &data)
Parse vector data of type 'int2' within an XML tag.
Definition Context_fileIO.cpp:206
helios::XMLparser::parse_radius
static int parse_radius(const pugi::xml_node &node_data, std::vector< float > &radius)
Parse the value within a <radius> (radius at nodes of a tube or cone) tag.
Definition Context_fileIO.cpp:491
@@ -5129,21 +5129,21 @@
helios::rotatePointAboutLine
vec3 rotatePointAboutLine(const vec3 &point, const vec3 &line_base, const vec3 &line_direction, float theta)
Rotate a 3D vector about an arbitrary line.
Definition global.cpp:140
helios::parse_float
bool parse_float(const std::string &input_string, float &converted_float)
Convert a string into a float with error checking.
Definition global.cpp:763
helios::parse_uint
bool parse_uint(const std::string &input_string, uint &converted_uint)
Convert a string into an unsigned integer with error checking.
Definition global.cpp:809
-
helios::getFileExtension
std::string getFileExtension(const std::string &filepath)
Parse a file string to get the extension.
Definition global.cpp:2991
+
helios::getFileExtension
std::string getFileExtension(const std::string &filepath)
Parse a file string to get the extension.
Definition global.cpp:2993
helios::helios_runtime_error
void helios_runtime_error(const std::string &error_message)
Function to throw a runtime error.
Definition global.cpp:29
helios::parse_int
bool parse_int(const std::string &input_string, int &converted_int)
Convert a string into an integer with error checking.
Definition global.cpp:794
helios::nullorigin
vec3 nullorigin
Default null vec3 that gives the origin (0,0,0)
Definition global.cpp:58
-
helios::getFileStem
std::string getFileStem(const std::string &filepath)
Parse a file string to get the filename without extension.
Definition global.cpp:3017
+
helios::getFileStem
std::string getFileStem(const std::string &filepath)
Parse a file string to get the filename without extension.
Definition global.cpp:3019
helios::makeIdentityMatrix
void makeIdentityMatrix(float(&T)[16])
Construct an identity matrix.
Definition global.cpp:555
-
helios::getFilePath
std::string getFilePath(const std::string &filepath, bool trailingslash=true)
Parse a file string to get the path (i.e., portion of the string before the file name).
Definition global.cpp:3043
+
helios::getFilePath
std::string getFilePath(const std::string &filepath, bool trailingslash=true)
Parse a file string to get the path (i.e., portion of the string before the file name).
Definition global.cpp:3045
helios::nullrotation
SphericalCoord nullrotation
Default null SphericalCoord that applies no rotation.
Definition global.cpp:57
-
helios::Context::addDiskObject
uint addDiskObject(uint Ndivs, const helios::vec3 &center, const helios::vec2 &size)
Add new Disk geometric primitive to the Context given its center, and size.
Definition Context.cpp:5133
-
helios::Context::addTubeObject
uint addTubeObject(uint radial_subdivisions, const std::vector< vec3 > &nodes, const std::vector< float > &radius)
Add a 3D tube compound object to the Context.
Definition Context.cpp:4638
-
helios::Context::addConeObject
uint addConeObject(uint Ndivs, const vec3 &node0, const vec3 &node1, float radius0, float radius1)
Add a 3D cone compound object to the Context.
Definition Context.cpp:5303
-
helios::Context::addBoxObject
uint addBoxObject(const vec3 &center, const vec3 &size, const int3 &subdiv)
Add a rectangular prism tessellated with Patch primitives.
Definition Context.cpp:4877
-
helios::Context::addPolymeshObject
uint addPolymeshObject(const std::vector< uint > &UUIDs)
Add new Polymesh Compound Object.
Definition Context.cpp:5276
-
helios::Context::addTileObject
uint addTileObject(const vec3 &center, const vec2 &size, const SphericalCoord &rotation, const int2 &subdiv)
Add a patch that is subdivided into a regular grid of sub-patches (tiled)
Definition Context.cpp:4460
-
helios::Context::addSphereObject
uint addSphereObject(uint Ndivs, const vec3 &center, float radius)
Add a spherical compound object to the Context.
Definition Context.cpp:4220
+
helios::Context::addDiskObject
uint addDiskObject(uint Ndivs, const helios::vec3 &center, const helios::vec2 &size)
Add new Disk geometric primitive to the Context given its center, and size.
Definition Context.cpp:5200
+
helios::Context::addTubeObject
uint addTubeObject(uint radial_subdivisions, const std::vector< vec3 > &nodes, const std::vector< float > &radius)
Add a 3D tube compound object to the Context.
Definition Context.cpp:4690
+
helios::Context::addConeObject
uint addConeObject(uint Ndivs, const vec3 &node0, const vec3 &node1, float radius0, float radius1)
Add a 3D cone compound object to the Context.
Definition Context.cpp:5370
+
helios::Context::addBoxObject
uint addBoxObject(const vec3 &center, const vec3 &size, const int3 &subdiv)
Add a rectangular prism tessellated with Patch primitives.
Definition Context.cpp:4944
+
helios::Context::addPolymeshObject
uint addPolymeshObject(const std::vector< uint > &UUIDs)
Add new Polymesh Compound Object.
Definition Context.cpp:5343
+
helios::Context::addTileObject
uint addTileObject(const vec3 &center, const vec2 &size, const SphericalCoord &rotation, const int2 &subdiv)
Add a patch that is subdivided into a regular grid of sub-patches (tiled)
Definition Context.cpp:4512
+
helios::Context::addSphereObject
uint addSphereObject(uint Ndivs, const vec3 &center, float radius)
Add a spherical compound object to the Context.
Definition Context.cpp:4272
helios::rotatePoint
vec3 rotatePoint(const vec3 &position, const SphericalCoord &rotation)
Function to rotate a 3D vector given spherical angles elevation and azimuth.
Definition global.cpp:79
helios::string2vec2
vec2 string2vec2(const char *str)
Convert a space-delimited string into a vec2 vector.
Definition global.cpp:623
helios::string2int2
int2 string2int2(const char *str)
Convert a space-delimited string into an int2 vector.
Definition global.cpp:683
@@ -5152,43 +5152,43 @@
helios::string2RGBcolor
RGBAcolor string2RGBcolor(const char *str)
Convert a space-delimited string into an RGBcolor vector.
Definition global.cpp:743
helios::string2int3
int3 string2int3(const char *str)
Convert a space-delimited string into an int3 vector.
Definition global.cpp:703
helios::separate_string_by_delimiter
std::vector< std::string > separate_string_by_delimiter(const std::string &inputstring, const std::string &delimiter)
Separate string by delimiter and store into a vector.
Definition global.cpp:950
-
helios::Context::addTriangle
uint addTriangle(const helios::vec3 &vertex0, const helios::vec3 &vertex1, const helios::vec3 &vertex2)
Add new Triangle geometric primitive.
Definition Context.cpp:1323
-
helios::Context::addVoxel
uint addVoxel(const helios::vec3 &center, const helios::vec3 &size)
Add new Voxel geometric primitive.
Definition Context.cpp:1367
-
helios::Context::addPatch
uint addPatch()
Add new default Patch geometric primitive, which is centered at the origin (0,0,0),...
Definition Context.cpp:1207
-
helios::Context::queryTimeseriesTime
Time queryTimeseriesTime(const char *label, uint index) const
Get the time associated with a timeseries data point.
Definition Context.cpp:1953
-
helios::Context::addTimeseriesData
void addTimeseriesData(const char *label, float value, const Date &date, const Time &time)
Add a data point to timeseries of data.
Definition Context.cpp:1818
-
helios::Context::queryTimeseriesDate
Date queryTimeseriesDate(const char *label, uint index) const
Get the date associated with a timeseries data point.
Definition Context.cpp:1989
+
helios::Context::addTriangle
uint addTriangle(const helios::vec3 &vertex0, const helios::vec3 &vertex1, const helios::vec3 &vertex2)
Add new Triangle geometric primitive.
Definition Context.cpp:1318
+
helios::Context::addVoxel
uint addVoxel(const helios::vec3 &center, const helios::vec3 &size)
Add new Voxel geometric primitive.
Definition Context.cpp:1362
+
helios::Context::addPatch
uint addPatch()
Add new default Patch geometric primitive, which is centered at the origin (0,0,0),...
Definition Context.cpp:1202
+
helios::Context::queryTimeseriesTime
Time queryTimeseriesTime(const char *label, uint index) const
Get the time associated with a timeseries data point.
Definition Context.cpp:1948
+
helios::Context::addTimeseriesData
void addTimeseriesData(const char *label, float value, const Date &date, const Time &time)
Add a data point to timeseries of data.
Definition Context.cpp:1813
+
helios::Context::queryTimeseriesDate
Date queryTimeseriesDate(const char *label, uint index) const
Get the date associated with a timeseries data point.
Definition Context.cpp:1984
helios::make_int2
int2 make_int2(int x, int y)
Make an int2 vector from two ints.
Definition helios_vector_types.h:99
-
helios::make_Time
Time make_Time(int hour, int minute)
Make a Time vector.
Definition helios_vector_types.h:1424
-
helios::make_vec2
vec2 make_vec2(float x, float y)
Make a vec2 from two floats.
Definition helios_vector_types.h:432
-
helios::make_RGBAcolor
RGBAcolor make_RGBAcolor(float r, float g, float b, float a)
Make an RGBAcolor vector.
Definition helios_vector_types.h:1130
-
helios::make_Date
Date make_Date(int day, int month, int year)
Make a Date vector.
Definition helios_vector_types.h:1238
-
helios::Julian2Calendar
Date Julian2Calendar(int JulianDay, int year)
Convert a Julian day to a calendar Date vector.
Definition helios_vector_types.h:1265
-
helios::make_RGBcolor
RGBcolor make_RGBcolor(float r, float g, float b)
Make an RGBcolor vector.
Definition helios_vector_types.h:951
+
helios::make_Time
Time make_Time(int hour, int minute)
Make a Time vector.
Definition helios_vector_types.h:1427
+
helios::make_vec2
vec2 make_vec2(float x, float y)
Make a vec2 from two floats.
Definition helios_vector_types.h:433
+
helios::make_RGBAcolor
RGBAcolor make_RGBAcolor(float r, float g, float b, float a)
Make an RGBAcolor vector.
Definition helios_vector_types.h:1133
+
helios::make_Date
Date make_Date(int day, int month, int year)
Make a Date vector.
Definition helios_vector_types.h:1241
+
helios::Julian2Calendar
Date Julian2Calendar(int JulianDay, int year)
Convert a Julian day to a calendar Date vector.
Definition helios_vector_types.h:1268
+
helios::make_RGBcolor
RGBcolor make_RGBcolor(float r, float g, float b)
Make an RGBcolor vector.
Definition helios_vector_types.h:954
helios::make_int3
int3 make_int3(int X, int Y, int Z)
Make an int3 vector from three ints.
Definition helios_vector_types.h:198
-
helios::make_vec3
vec3 make_vec3(float x, float y, float z)
Make a vec3 from three floats.
Definition helios_vector_types.h:587
-
helios::make_SphericalCoord
SphericalCoord make_SphericalCoord(float elevation_radians, float azimuth_radians)
Make a SphericalCoord by specifying elevation and azimuth.
Definition helios_vector_types.h:1536
- -
helios::Date::month
int month
Month of year.
Definition helios_vector_types.h:1171
+
helios::make_vec3
vec3 make_vec3(float x, float y, float z)
Make a vec3 from three floats.
Definition helios_vector_types.h:589
+
helios::make_SphericalCoord
SphericalCoord make_SphericalCoord(float elevation_radians, float azimuth_radians)
Make a SphericalCoord by specifying elevation and azimuth.
Definition helios_vector_types.h:1539
+ +
helios::Date::month
int month
Month of year.
Definition helios_vector_types.h:1174
helios::Date::incrementDay
void incrementDay()
Increment Date vector by one day.
Definition global.cpp:202
-
helios::Date::day
int day
Day of month.
Definition helios_vector_types.h:1169
-
helios::Date::year
int year
Year in YYYY format.
Definition helios_vector_types.h:1173
+
helios::Date::day
int day
Day of month.
Definition helios_vector_types.h:1172
+
helios::Date::year
int year
Year in YYYY format.
Definition helios_vector_types.h:1176
helios::GlobalData
Structure for Global Data Entities.
Definition Context.h:102
-
helios::RGBAcolor
R-G-B-A color vector.
Definition helios_vector_types.h:1021
-
helios::RGBAcolor::r
float r
Red color component.
Definition helios_vector_types.h:1026
-
helios::RGBAcolor::a
float a
Alpha (transparency) component.
Definition helios_vector_types.h:1035
-
helios::RGBAcolor::b
float b
Blue color component.
Definition helios_vector_types.h:1032
-
helios::RGBAcolor::g
float g
Green color component.
Definition helios_vector_types.h:1029
-
helios::RGBcolor
R-G-B color vector.
Definition helios_vector_types.h:841
-
helios::RGBcolor::b
float b
Blue color component.
Definition helios_vector_types.h:852
-
helios::RGBcolor::r
float r
Red color component.
Definition helios_vector_types.h:846
-
helios::RGBcolor::scale
void scale(float scale_factor)
Scale RGBcolor by some factor.
Definition helios_vector_types.h:907
-
helios::RGBcolor::g
float g
Green color component.
Definition helios_vector_types.h:849
-
helios::SphericalCoord
Vector of spherical coordinates (elevation,azimuth)
Definition helios_vector_types.h:1468
- -
helios::Time::second
int second
Second of minute.
Definition helios_vector_types.h:1352
-
helios::Time::hour
int hour
Hour of day.
Definition helios_vector_types.h:1356
-
helios::Time::minute
int minute
Minute of hour.
Definition helios_vector_types.h:1354
+
helios::RGBAcolor
R-G-B-A color vector.
Definition helios_vector_types.h:1024
+
helios::RGBAcolor::r
float r
Red color component.
Definition helios_vector_types.h:1029
+
helios::RGBAcolor::a
float a
Alpha (transparency) component.
Definition helios_vector_types.h:1038
+
helios::RGBAcolor::b
float b
Blue color component.
Definition helios_vector_types.h:1035
+
helios::RGBAcolor::g
float g
Green color component.
Definition helios_vector_types.h:1032
+
helios::RGBcolor
R-G-B color vector.
Definition helios_vector_types.h:844
+
helios::RGBcolor::b
float b
Blue color component.
Definition helios_vector_types.h:855
+
helios::RGBcolor::r
float r
Red color component.
Definition helios_vector_types.h:849
+
helios::RGBcolor::scale
void scale(float scale_factor)
Scale RGBcolor by some factor.
Definition helios_vector_types.h:910
+
helios::RGBcolor::g
float g
Green color component.
Definition helios_vector_types.h:852
+
helios::SphericalCoord
Vector of spherical coordinates (elevation,azimuth)
Definition helios_vector_types.h:1471
+ +
helios::Time::second
int second
Second of minute.
Definition helios_vector_types.h:1355
+
helios::Time::hour
int hour
Hour of day.
Definition helios_vector_types.h:1359
+
helios::Time::minute
int minute
Minute of hour.
Definition helios_vector_types.h:1357
helios::int2
Vector of two elements of type 'int'.
Definition helios_vector_types.h:44
helios::int2::y
int y
Second element in vector.
Definition helios_vector_types.h:50
helios::int2::x
int x
First element in vector.
Definition helios_vector_types.h:48
@@ -5204,15 +5204,15 @@
helios::vec2
Vector of two elements of type 'float'.
Definition helios_vector_types.h:346
helios::vec2::x
float x
First element in vector.
Definition helios_vector_types.h:350
helios::vec2::y
float y
Second element in vector.
Definition helios_vector_types.h:352
-
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:502
-
helios::vec3::x
float x
First element in vector.
Definition helios_vector_types.h:506
-
helios::vec3::z
float z
Third element in vector.
Definition helios_vector_types.h:510
-
helios::vec3::y
float y
Second element in vector.
Definition helios_vector_types.h:508
-
helios::vec4
Vector of four elements of type 'float'.
Definition helios_vector_types.h:671
-
helios::vec4::y
float y
Second element in vector.
Definition helios_vector_types.h:677
-
helios::vec4::w
float w
Fourth element in vector.
Definition helios_vector_types.h:681
-
helios::vec4::z
float z
Third element in vector.
Definition helios_vector_types.h:679
-
helios::vec4::x
float x
First element in vector.
Definition helios_vector_types.h:675
+
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:503
+
helios::vec3::x
float x
First element in vector.
Definition helios_vector_types.h:507
+
helios::vec3::z
float z
Third element in vector.
Definition helios_vector_types.h:511
+
helios::vec3::y
float y
Second element in vector.
Definition helios_vector_types.h:509
+
helios::vec4
Vector of four elements of type 'float'.
Definition helios_vector_types.h:673
+
helios::vec4::y
float y
Second element in vector.
Definition helios_vector_types.h:679
+
helios::vec4::w
float w
Fourth element in vector.
Definition helios_vector_types.h:683
+
helios::vec4::z
float z
Third element in vector.
Definition helios_vector_types.h:681
+
helios::vec4::x
float x
First element in vector.
Definition helios_vector_types.h:677
diff --git a/doc/html/_convert_p_l_y.html b/doc/html/_convert_p_l_y.html index bdd14acb5..83d1b55db 100644 --- a/doc/html/_convert_p_l_y.html +++ b/doc/html/_convert_p_l_y.html @@ -38,7 +38,7 @@
diff --git a/doc/html/_dependent_software.html b/doc/html/_dependent_software.html index ab34606a6..c565f0532 100644 --- a/doc/html/_dependent_software.html +++ b/doc/html/_dependent_software.html @@ -38,7 +38,7 @@ diff --git a/doc/html/_dummy.html b/doc/html/_dummy.html index 1a8cdae84..a3c436d20 100644 --- a/doc/html/_dummy.html +++ b/doc/html/_dummy.html @@ -38,7 +38,7 @@ diff --git a/doc/html/_dummy_model_8cpp.html b/doc/html/_dummy_model_8cpp.html index 3e91c222d..9e44563aa 100644 --- a/doc/html/_dummy_model_8cpp.html +++ b/doc/html/_dummy_model_8cpp.html @@ -38,7 +38,7 @@ diff --git a/doc/html/_dummy_model_8cpp_source.html b/doc/html/_dummy_model_8cpp_source.html index 156eb0bc9..6ffdfb289 100644 --- a/doc/html/_dummy_model_8cpp_source.html +++ b/doc/html/_dummy_model_8cpp_source.html @@ -38,7 +38,7 @@ @@ -138,7 +138,7 @@
DummyModel::DummyModel
DummyModel(helios::Context *context)
Constructor.
Definition DummyModel.cpp:7
DummyModel::run
void run(void)
Function to run the dummy model.
Definition DummyModel.cpp:15
helios::Context
Stores the state associated with simulation.
Definition Context.h:1882
-
helios::Context::getPrimitiveCount
uint getPrimitiveCount() const
Get the total number of Primitives in the Context.
Definition Context.cpp:1754
+
helios::Context::getPrimitiveCount
uint getPrimitiveCount() const
Get the total number of Primitives in the Context.
Definition Context.cpp:1749
diff --git a/doc/html/_dummy_model_8h.html b/doc/html/_dummy_model_8h.html index e734fb75a..391ece2bc 100644 --- a/doc/html/_dummy_model_8h.html +++ b/doc/html/_dummy_model_8h.html @@ -38,7 +38,7 @@
diff --git a/doc/html/_dummy_model_8h_source.html b/doc/html/_dummy_model_8h_source.html index 5c4af96fa..076830ff8 100644 --- a/doc/html/_dummy_model_8h_source.html +++ b/doc/html/_dummy_model_8h_source.html @@ -38,7 +38,7 @@ diff --git a/doc/html/_energy_balance_doc.html b/doc/html/_energy_balance_doc.html index 0ca2929fb..5b4e62323 100644 --- a/doc/html/_energy_balance_doc.html +++ b/doc/html/_energy_balance_doc.html @@ -38,7 +38,7 @@ @@ -387,9 +387,9 @@

}
helios::Context
Stores the state associated with simulation.
Definition Context.h:1882
-
helios::Context::addPatch
uint addPatch()
Add new default Patch geometric primitive, which is centered at the origin (0,0,0),...
Definition Context.cpp:1207
+
helios::Context::addPatch
uint addPatch()
Add new default Patch geometric primitive, which is centered at the origin (0,0,0),...
Definition Context.cpp:1202
helios::vec2
Vector of two elements of type 'float'.
Definition helios_vector_types.h:346
-
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:502
+
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:503

Unsteady model with heat storage

Additional functions are available to run the unsteady energy balance model with heat storage. If the timestep argument "dt" is passed with value greater than 0, and the heat capacity $C_p$ is greater than 0, the unsteady energy balance equation will be applied with the heat storage term included. The equation is discretized in time using a forward Euler scheme in order to solve for the surface temperature at time $t+\Delta t$

diff --git a/doc/html/_energy_balance_model_8cpp.html b/doc/html/_energy_balance_model_8cpp.html index 857475a00..8ead9d96e 100644 --- a/doc/html/_energy_balance_model_8cpp.html +++ b/doc/html/_energy_balance_model_8cpp.html @@ -38,7 +38,7 @@ diff --git a/doc/html/_energy_balance_model_8cpp_source.html b/doc/html/_energy_balance_model_8cpp_source.html index b42fcde1a..918ac5c4a 100644 --- a/doc/html/_energy_balance_model_8cpp_source.html +++ b/doc/html/_energy_balance_model_8cpp_source.html @@ -38,7 +38,7 @@ @@ -447,161 +447,169 @@
346
-
347void EnergyBalanceModel::optionalOutputPrimitiveData( const char* label ){
-
348
-
349 if( strcmp(label,"boundarylayer_conductance_out")==0 || strcmp(label,"vapor_pressure_deficit")==0 ){
-
350 output_prim_data.emplace_back( label );
-
351 }else{
-
352 std::cout << "WARNING (EnergyBalanceModel::optionalOutputPrimitiveData): unknown output primitive data " << label << std::endl;
-
353 }
-
354
-
355}
+
347void EnergyBalanceModel::addRadiationBand( const std::vector<std::string> &bands ){
+
348 for( auto &band : bands ){
+
349 addRadiationBand(band.c_str());
+
350 }
+
351}
-
356
-
-
357void EnergyBalanceModel::printDefaultValueReport() const{
-
358 printDefaultValueReport(context->getAllUUIDs());
-
359}
+
352
+
+
353void EnergyBalanceModel::optionalOutputPrimitiveData( const char* label ){
+
354
+
355 if( strcmp(label,"boundarylayer_conductance_out")==0 || strcmp(label,"vapor_pressure_deficit")==0 ){
+
356 output_prim_data.emplace_back( label );
+
357 }else{
+
358 std::cout << "WARNING (EnergyBalanceModel::optionalOutputPrimitiveData): unknown output primitive data " << label << std::endl;
+
359 }
+
360
+
361}
-
360
-
-
361void EnergyBalanceModel::printDefaultValueReport(const std::vector<uint> &UUIDs) const {
362
-
363 size_t assumed_default_TL = 0;
-
364 size_t assumed_default_U = 0;
-
365 size_t assumed_default_L = 0;
-
366 size_t assumed_default_p = 0;
-
367 size_t assumed_default_Ta = 0;
-
368 size_t assumed_default_rh = 0;
-
369 size_t assumed_default_gH = 0;
-
370 size_t assumed_default_gs = 0;
-
371 size_t assumed_default_Qother = 0;
-
372 size_t assumed_default_heatcapacity = 0;
-
373 size_t assumed_default_fs = 0;
-
374 size_t twosided_0 = 0;
-
375 size_t twosided_1 = 0;
-
376 size_t Ne_1 = 0;
-
377 size_t Ne_2 = 0;
-
378
-
379 size_t Nprimitives = UUIDs.size();
-
380
-
381 for (uint UUID: UUIDs) {
-
382
-
383 //surface temperature (K)
-
384 if (!context->doesPrimitiveDataExist(UUID, "temperature") ||
-
385 context->getPrimitiveDataType(UUID, "temperature") != HELIOS_TYPE_FLOAT) {
-
386 assumed_default_TL++;
-
387 }
+ +
366
+
+
367void EnergyBalanceModel::printDefaultValueReport(const std::vector<uint> &UUIDs) const {
+
368
+
369 size_t assumed_default_TL = 0;
+
370 size_t assumed_default_U = 0;
+
371 size_t assumed_default_L = 0;
+
372 size_t assumed_default_p = 0;
+
373 size_t assumed_default_Ta = 0;
+
374 size_t assumed_default_rh = 0;
+
375 size_t assumed_default_gH = 0;
+
376 size_t assumed_default_gs = 0;
+
377 size_t assumed_default_Qother = 0;
+
378 size_t assumed_default_heatcapacity = 0;
+
379 size_t assumed_default_fs = 0;
+
380 size_t twosided_0 = 0;
+
381 size_t twosided_1 = 0;
+
382 size_t Ne_1 = 0;
+
383 size_t Ne_2 = 0;
+
384
+
385 size_t Nprimitives = UUIDs.size();
+
386
+
387 for (uint UUID: UUIDs) {
388
-
389 //air pressure (Pa)
-
390 if (!context->doesPrimitiveDataExist(UUID, "air_pressure") ||
-
391 context->getPrimitiveDataType(UUID, "air_pressure") != HELIOS_TYPE_FLOAT) {
-
392 assumed_default_p++;
+
389 //surface temperature (K)
+
390 if (!context->doesPrimitiveDataExist(UUID, "temperature") ||
+
391 context->getPrimitiveDataType(UUID, "temperature") != HELIOS_TYPE_FLOAT) {
+
392 assumed_default_TL++;
393 }
394
-
395 //air temperature (K)
-
396 if (!context->doesPrimitiveDataExist(UUID, "air_temperature") ||
-
397 context->getPrimitiveDataType(UUID, "air_temperature") != HELIOS_TYPE_FLOAT) {
-
398 assumed_default_Ta++;
+
395 //air pressure (Pa)
+
396 if (!context->doesPrimitiveDataExist(UUID, "air_pressure") ||
+
397 context->getPrimitiveDataType(UUID, "air_pressure") != HELIOS_TYPE_FLOAT) {
+
398 assumed_default_p++;
399 }
400
-
401 //air humidity
-
402 if (!context->doesPrimitiveDataExist(UUID, "air_humidity") ||
-
403 context->getPrimitiveDataType(UUID, "air_humidity") != HELIOS_TYPE_FLOAT) {
-
404 assumed_default_rh++;
+
401 //air temperature (K)
+
402 if (!context->doesPrimitiveDataExist(UUID, "air_temperature") ||
+
403 context->getPrimitiveDataType(UUID, "air_temperature") != HELIOS_TYPE_FLOAT) {
+
404 assumed_default_Ta++;
405 }
406
-
407 //boundary-layer conductance to heat
-
408 if (!context->doesPrimitiveDataExist(UUID, "boundarylayer_conductance") || context->getPrimitiveDataType(UUID, "boundarylayer_conductance") != HELIOS_TYPE_FLOAT){
-
409 assumed_default_gH++;
-
410 }
-
411
-
412 //wind speed
-
413 if (!context->doesPrimitiveDataExist(UUID, "wind_speed") || context->getPrimitiveDataType(UUID, "wind_speed") != HELIOS_TYPE_FLOAT){
-
414 assumed_default_U++;
-
415 }
-
416
-
417 //object length
-
418 if (!context->doesPrimitiveDataExist(UUID, "object_length") || context->getPrimitiveDataType(UUID, "object_length") != HELIOS_TYPE_FLOAT){
-
419 assumed_default_L++;
-
420 }
-
421
-
422 //moisture conductance
-
423 if (!context->doesPrimitiveDataExist(UUID, "moisture_conductance") || context->getPrimitiveDataType(UUID, "moisture_conductance") != HELIOS_TYPE_FLOAT){
-
424 assumed_default_gs++;
-
425 }
-
426
-
427 //Heat capacity
-
428 if (!context->doesPrimitiveDataExist(UUID, "heat_capacity") || context->getPrimitiveDataType(UUID, "heat_capacity") != HELIOS_TYPE_FLOAT) {
-
429 assumed_default_heatcapacity++;
-
430 }
-
431
-
432 //"Other" heat fluxes
-
433 if (!context->doesPrimitiveDataExist(UUID, "other_surface_flux") || context->getPrimitiveDataType(UUID, "other_surface_flux") != HELIOS_TYPE_FLOAT) {
-
434 assumed_default_Qother++;
-
435 }
-
436
-
437 //two-sided flag
-
438 if ( context->doesPrimitiveDataExist(UUID, "twosided_flag") && context->getPrimitiveDataType(UUID, "twosided_flag") == HELIOS_TYPE_UINT) {
-
439 uint twosided;
-
440 context->getPrimitiveData(UUID, "twosided_flag", twosided);
-
441 if( twosided==0 ){
-
442 twosided_0++;
-
443 }else if( twosided==1 ){
-
444 twosided_1++;
-
445 }
-
446 }else{
-
447 twosided_1++;
-
448 }
-
449
-
450 //number of evaporating faces
-
451 if ( context->doesPrimitiveDataExist(UUID, "evaporating_faces") && context->getPrimitiveDataType(UUID, "evaporating_faces") == HELIOS_TYPE_UINT) {
-
452 uint Ne;
-
453 context->getPrimitiveData(UUID, "evaporating_faces", Ne);
-
454 if( Ne==1 ){
-
455 Ne_1++;
-
456 }else if( Ne==2 ){
-
457 Ne_2++;
-
458 }
-
459 }else{
-
460 Ne_1++;
-
461 }
-
462
-
463 //Surface humidity
-
464 if (!context->doesPrimitiveDataExist(UUID, "surface_humidity") || context->getPrimitiveDataType(UUID, "surface_humidity") != HELIOS_TYPE_FLOAT) {
-
465 assumed_default_fs++;
-
466 }
-
467
-
468 }
-
469
-
470 std::cout << "--- Energy Balance Model Default Value Report ---" << std::endl;
-
471
-
472 std::cout << "surface temperature (initial guess): " << assumed_default_TL << " of " << Nprimitives << " used default value of " << temperature_default << " because ""temperature"" primitive data did not exist" << std::endl;
-
473 std::cout << "air pressure: " << assumed_default_p << " of " << Nprimitives << " used default value of " << pressure_default << " because ""air_pressure"" primitive data did not exist" << std::endl;
-
474 std::cout << "air temperature: " << assumed_default_Ta << " of " << Nprimitives << " used default value of " << air_temperature_default << " because ""air_temperature"" primitive data did not exist" << std::endl;
-
475 std::cout << "air humidity: " << assumed_default_rh << " of " << Nprimitives << " used default value of " << air_humidity_default << " because ""air_humidity"" primitive data did not exist" << std::endl;
-
476 std::cout << "boundary-layer conductance: " << assumed_default_gH << " of " << Nprimitives << " calculated boundary-layer conductance from Polhausen equation because ""boundarylayer_conductance"" primitive data did not exist" << std::endl;
-
477 if( assumed_default_gH>0 ){
-
478 std::cout << " - wind speed: " << assumed_default_U << " of " << assumed_default_gH << " using Polhausen equation used default value of " << wind_speed_default << " because ""wind_speed"" primitive data did not exist" << std::endl;
-
479 std::cout << " - object length: " << assumed_default_L << " of " << assumed_default_gH << " using Polhausen equation used the primitive/object length/area to calculate object length because ""object_length"" primitive data did not exist" << std::endl;
-
480 }
-
481 std::cout << "moisture conductance: " << assumed_default_gs << " of " << Nprimitives << " used default value of " << gS_default << " because ""moisture_conductance"" primitive data did not exist" << std::endl;
-
482 std::cout << "surface humidity: " << assumed_default_fs << " of " << Nprimitives << " used default value of " << surface_humidity_default << " because ""surface_humidity"" primitive data did not exist" << std::endl;
-
483 std::cout << "two-sided flag: " << twosided_0 << " of " << Nprimitives << " used two-sided flag=0; " << twosided_1 << " of " << Nprimitives << " used two-sided flag=1 (default)" << std::endl;
-
484 std::cout << "evaporating faces: " << Ne_1 << " of " << Nprimitives << " used Ne = 1 (default); " << Ne_2 << " of " << Nprimitives << " used Ne = 2" << std::endl;
-
485
-
486 std::cout << "------------------------------------------------------" << std::endl;
-
487
-
488}
+
407 //air humidity
+
408 if (!context->doesPrimitiveDataExist(UUID, "air_humidity") ||
+
409 context->getPrimitiveDataType(UUID, "air_humidity") != HELIOS_TYPE_FLOAT) {
+
410 assumed_default_rh++;
+
411 }
+
412
+
413 //boundary-layer conductance to heat
+
414 if (!context->doesPrimitiveDataExist(UUID, "boundarylayer_conductance") || context->getPrimitiveDataType(UUID, "boundarylayer_conductance") != HELIOS_TYPE_FLOAT){
+
415 assumed_default_gH++;
+
416 }
+
417
+
418 //wind speed
+
419 if (!context->doesPrimitiveDataExist(UUID, "wind_speed") || context->getPrimitiveDataType(UUID, "wind_speed") != HELIOS_TYPE_FLOAT){
+
420 assumed_default_U++;
+
421 }
+
422
+
423 //object length
+
424 if (!context->doesPrimitiveDataExist(UUID, "object_length") || context->getPrimitiveDataType(UUID, "object_length") != HELIOS_TYPE_FLOAT){
+
425 assumed_default_L++;
+
426 }
+
427
+
428 //moisture conductance
+
429 if (!context->doesPrimitiveDataExist(UUID, "moisture_conductance") || context->getPrimitiveDataType(UUID, "moisture_conductance") != HELIOS_TYPE_FLOAT){
+
430 assumed_default_gs++;
+
431 }
+
432
+
433 //Heat capacity
+
434 if (!context->doesPrimitiveDataExist(UUID, "heat_capacity") || context->getPrimitiveDataType(UUID, "heat_capacity") != HELIOS_TYPE_FLOAT) {
+
435 assumed_default_heatcapacity++;
+
436 }
+
437
+
438 //"Other" heat fluxes
+
439 if (!context->doesPrimitiveDataExist(UUID, "other_surface_flux") || context->getPrimitiveDataType(UUID, "other_surface_flux") != HELIOS_TYPE_FLOAT) {
+
440 assumed_default_Qother++;
+
441 }
+
442
+
443 //two-sided flag
+
444 if ( context->doesPrimitiveDataExist(UUID, "twosided_flag") && context->getPrimitiveDataType(UUID, "twosided_flag") == HELIOS_TYPE_UINT) {
+
445 uint twosided;
+
446 context->getPrimitiveData(UUID, "twosided_flag", twosided);
+
447 if( twosided==0 ){
+
448 twosided_0++;
+
449 }else if( twosided==1 ){
+
450 twosided_1++;
+
451 }
+
452 }else{
+
453 twosided_1++;
+
454 }
+
455
+
456 //number of evaporating faces
+
457 if ( context->doesPrimitiveDataExist(UUID, "evaporating_faces") && context->getPrimitiveDataType(UUID, "evaporating_faces") == HELIOS_TYPE_UINT) {
+
458 uint Ne;
+
459 context->getPrimitiveData(UUID, "evaporating_faces", Ne);
+
460 if( Ne==1 ){
+
461 Ne_1++;
+
462 }else if( Ne==2 ){
+
463 Ne_2++;
+
464 }
+
465 }else{
+
466 Ne_1++;
+
467 }
+
468
+
469 //Surface humidity
+
470 if (!context->doesPrimitiveDataExist(UUID, "surface_humidity") || context->getPrimitiveDataType(UUID, "surface_humidity") != HELIOS_TYPE_FLOAT) {
+
471 assumed_default_fs++;
+
472 }
+
473
+
474 }
+
475
+
476 std::cout << "--- Energy Balance Model Default Value Report ---" << std::endl;
+
477
+
478 std::cout << "surface temperature (initial guess): " << assumed_default_TL << " of " << Nprimitives << " used default value of " << temperature_default << " because ""temperature"" primitive data did not exist" << std::endl;
+
479 std::cout << "air pressure: " << assumed_default_p << " of " << Nprimitives << " used default value of " << pressure_default << " because ""air_pressure"" primitive data did not exist" << std::endl;
+
480 std::cout << "air temperature: " << assumed_default_Ta << " of " << Nprimitives << " used default value of " << air_temperature_default << " because ""air_temperature"" primitive data did not exist" << std::endl;
+
481 std::cout << "air humidity: " << assumed_default_rh << " of " << Nprimitives << " used default value of " << air_humidity_default << " because ""air_humidity"" primitive data did not exist" << std::endl;
+
482 std::cout << "boundary-layer conductance: " << assumed_default_gH << " of " << Nprimitives << " calculated boundary-layer conductance from Polhausen equation because ""boundarylayer_conductance"" primitive data did not exist" << std::endl;
+
483 if( assumed_default_gH>0 ){
+
484 std::cout << " - wind speed: " << assumed_default_U << " of " << assumed_default_gH << " using Polhausen equation used default value of " << wind_speed_default << " because ""wind_speed"" primitive data did not exist" << std::endl;
+
485 std::cout << " - object length: " << assumed_default_L << " of " << assumed_default_gH << " using Polhausen equation used the primitive/object length/area to calculate object length because ""object_length"" primitive data did not exist" << std::endl;
+
486 }
+
487 std::cout << "moisture conductance: " << assumed_default_gs << " of " << Nprimitives << " used default value of " << gS_default << " because ""moisture_conductance"" primitive data did not exist" << std::endl;
+
488 std::cout << "surface humidity: " << assumed_default_fs << " of " << Nprimitives << " used default value of " << surface_humidity_default << " because ""surface_humidity"" primitive data did not exist" << std::endl;
+
489 std::cout << "two-sided flag: " << twosided_0 << " of " << Nprimitives << " used two-sided flag=0; " << twosided_1 << " of " << Nprimitives << " used two-sided flag=1 (default)" << std::endl;
+
490 std::cout << "evaporating faces: " << Ne_1 << " of " << Nprimitives << " used Ne = 1 (default); " << Ne_2 << " of " << Nprimitives << " used Ne = 2" << std::endl;
+
491
+
492 std::cout << "------------------------------------------------------" << std::endl;
+
493
+
494}
helios::HELIOS_TYPE_UINT
@ HELIOS_TYPE_UINT
unsigned integer data type
Definition Context.h:45
helios::HELIOS_TYPE_FLOAT
@ HELIOS_TYPE_FLOAT
floating point data type
Definition Context.h:47
EnergyBalanceModel
Energy balance model class.
Definition EnergyBalanceModel.h:23
-
EnergyBalanceModel::printDefaultValueReport
void printDefaultValueReport() const
Print a report detailing usage of default input values for all primitives in the Context.
Definition EnergyBalanceModel.cpp:357
+
EnergyBalanceModel::printDefaultValueReport
void printDefaultValueReport() const
Print a report detailing usage of default input values for all primitives in the Context.
Definition EnergyBalanceModel.cpp:363
EnergyBalanceModel::enableMessages
void enableMessages()
Enable standard output from this plug-in (default)
Definition EnergyBalanceModel.cpp:333
EnergyBalanceModel::addRadiationBand
void addRadiationBand(const char *band)
Add the label of a radiation band in the RadiationModel plug-in that should be used in calculation of...
Definition EnergyBalanceModel.cpp:341
-
EnergyBalanceModel::optionalOutputPrimitiveData
void optionalOutputPrimitiveData(const char *label)
Add optional output primitive data values to the Context.
Definition EnergyBalanceModel.cpp:347
+
EnergyBalanceModel::optionalOutputPrimitiveData
void optionalOutputPrimitiveData(const char *label)
Add optional output primitive data values to the Context.
Definition EnergyBalanceModel.cpp:353
EnergyBalanceModel::disableMessages
void disableMessages()
Disable standard output from this plug-in.
Definition EnergyBalanceModel.cpp:337
EnergyBalanceModel::run
void run()
Function to run the energy balance model for all primitives in the Context.
Definition EnergyBalanceModel.cu:118
@@ -609,13 +617,13 @@
helios::Context
Stores the state associated with simulation.
Definition Context.h:1882
helios::Context::getPrimitiveData
void getPrimitiveData(uint UUID, const char *label, int &data) const
Get data associated with a primitive element.
Definition Context_data.cpp:1001
helios::Context::doesPrimitiveDataExist
bool doesPrimitiveDataExist(uint UUID, const char *label) const
Check if primitive data 'label' exists.
Definition Context_data.cpp:1169
-
helios::Context::getAllUUIDs
std::vector< uint > getAllUUIDs() const
Get all primitive UUIDs currently in the Context.
Definition Context.cpp:1758
+
helios::Context::getAllUUIDs
std::vector< uint > getAllUUIDs() const
Get all primitive UUIDs currently in the Context.
Definition Context.cpp:1753
helios::Context::getPrimitiveDataType
HeliosDataType getPrimitiveDataType(uint UUID, const char *label) const
Get the Helios data type of primitive data.
Definition Context_data.cpp:1155
helios::Context::setPrimitiveData
void setPrimitiveData(const uint &UUID, const char *label, const int &data)
Add data value (int) associated with a primitive element.
Definition Context_data.cpp:655
-
helios::Context::addTriangle
uint addTriangle(const helios::vec3 &vertex0, const helios::vec3 &vertex1, const helios::vec3 &vertex2)
Add new Triangle geometric primitive.
Definition Context.cpp:1323
-
helios::Context::addPatch
uint addPatch()
Add new default Patch geometric primitive, which is centered at the origin (0,0,0),...
Definition Context.cpp:1207
-
helios::make_vec2
vec2 make_vec2(float x, float y)
Make a vec2 from two floats.
Definition helios_vector_types.h:432
-
helios::make_vec3
vec3 make_vec3(float x, float y, float z)
Make a vec3 from three floats.
Definition helios_vector_types.h:587
+
helios::Context::addTriangle
uint addTriangle(const helios::vec3 &vertex0, const helios::vec3 &vertex1, const helios::vec3 &vertex2)
Add new Triangle geometric primitive.
Definition Context.cpp:1318
+
helios::Context::addPatch
uint addPatch()
Add new default Patch geometric primitive, which is centered at the origin (0,0,0),...
Definition Context.cpp:1202
+
helios::make_vec2
vec2 make_vec2(float x, float y)
Make a vec2 from two floats.
Definition helios_vector_types.h:433
+
helios::make_vec3
vec3 make_vec3(float x, float y, float z)
Make a vec3 from three floats.
Definition helios_vector_types.h:589
diff --git a/doc/html/_energy_balance_model_8cu.html b/doc/html/_energy_balance_model_8cu.html index c7269fdca..f11698dd5 100644 --- a/doc/html/_energy_balance_model_8cu.html +++ b/doc/html/_energy_balance_model_8cu.html @@ -38,7 +38,7 @@
diff --git a/doc/html/_energy_balance_model_8cu_source.html b/doc/html/_energy_balance_model_8cu_source.html index 8649dbb50..a763c3236 100644 --- a/doc/html/_energy_balance_model_8cu_source.html +++ b/doc/html/_energy_balance_model_8cu_source.html @@ -38,7 +38,7 @@ @@ -619,13 +619,13 @@
helios::HELIOS_TYPE_FLOAT
@ HELIOS_TYPE_FLOAT
floating point data type
Definition Context.h:47
EnergyBalanceModel::run
void run()
Function to run the energy balance model for all primitives in the Context.
Definition EnergyBalanceModel.cu:118
-
helios::Context::getPrimitiveArea
float getPrimitiveArea(uint UUID) const
Method to return the surface area of a Primitive.
Definition Context.cpp:6930
+
helios::Context::getPrimitiveArea
float getPrimitiveArea(uint UUID) const
Method to return the surface area of a Primitive.
Definition Context.cpp:6997
helios::Context::getPrimitiveData
void getPrimitiveData(uint UUID, const char *label, int &data) const
Get data associated with a primitive element.
Definition Context_data.cpp:1001
-
helios::Context::getPrimitiveParentObjectID
uint getPrimitiveParentObjectID(uint UUID) const
Method to return the ID of the parent object the primitive belongs to (default is object 0)
Definition Context.cpp:6894
+
helios::Context::getPrimitiveParentObjectID
uint getPrimitiveParentObjectID(uint UUID) const
Method to return the ID of the parent object the primitive belongs to (default is object 0)
Definition Context.cpp:6961
helios::Context::doesPrimitiveDataExist
bool doesPrimitiveDataExist(uint UUID, const char *label) const
Check if primitive data 'label' exists.
Definition Context_data.cpp:1169
-
helios::Context::getAllUUIDs
std::vector< uint > getAllUUIDs() const
Get all primitive UUIDs currently in the Context.
Definition Context.cpp:1758
+
helios::Context::getAllUUIDs
std::vector< uint > getAllUUIDs() const
Get all primitive UUIDs currently in the Context.
Definition Context.cpp:1753
helios::Context::getPrimitiveDataType
HeliosDataType getPrimitiveDataType(uint UUID, const char *label) const
Get the Helios data type of primitive data.
Definition Context_data.cpp:1155
-
helios::Context::getObjectArea
float getObjectArea(uint ObjID) const
Method to return the one-sided surface area of an object.
Definition Context.cpp:7797
+
helios::Context::getObjectArea
float getObjectArea(uint ObjID) const
Method to return the one-sided surface area of an object.
Definition Context.cpp:7864
helios::Context::setPrimitiveData
void setPrimitiveData(const uint &UUID, const char *label, const int &data)
Add data value (int) associated with a primitive element.
Definition Context_data.cpp:655
helios::helios_runtime_error
void helios_runtime_error(const std::string &error_message)
Function to throw a runtime error.
Definition global.cpp:29
diff --git a/doc/html/_energy_balance_model_8h.html b/doc/html/_energy_balance_model_8h.html index 1e4450653..3b1cd2879 100644 --- a/doc/html/_energy_balance_model_8h.html +++ b/doc/html/_energy_balance_model_8h.html @@ -38,7 +38,7 @@ diff --git a/doc/html/_energy_balance_model_8h_source.html b/doc/html/_energy_balance_model_8h_source.html index 395324f4a..6257f384a 100644 --- a/doc/html/_energy_balance_model_8h_source.html +++ b/doc/html/_energy_balance_model_8h_source.html @@ -38,7 +38,7 @@ @@ -140,51 +140,54 @@
70 void addRadiationBand( const char* band );
71
73
-
76 void optionalOutputPrimitiveData( const char* label );
+
76 void addRadiationBand( const std::vector<std::string> &bands );
77
-
79 void printDefaultValueReport() const;
-
80
-
82
-
85 void printDefaultValueReport(const std::vector<uint> &UUIDs) const;
+
79
+
82 void optionalOutputPrimitiveData( const char* label );
+
83
+
85 void printDefaultValueReport() const;
86
-
87private:
88
-
90 helios::Context* context;
-
91
-
93 float temperature_default;
+
91 void printDefaultValueReport(const std::vector<uint> &UUIDs) const;
+
92
+
93private:
94
-
96 float wind_speed_default;
+
96 helios::Context* context;
97
-
99 float air_temperature_default;
+
99 float temperature_default;
100
-
102 float air_humidity_default;
+
102 float wind_speed_default;
103
-
105 float pressure_default;
+
105 float air_temperature_default;
106
-
108 float gS_default;
+
108 float air_humidity_default;
109
-
111 float heatcapacity_default;
+
111 float pressure_default;
112
-
114 float Qother_default;
+
114 float gS_default;
115
-
117 float surface_humidity_default;
+
117 float heatcapacity_default;
118
-
119 bool message_flag;
-
120
-
122 std::vector<std::string> radiation_bands;
-
123
-
125 std::vector<std::string> output_prim_data;
+
120 float Qother_default;
+
121
+
123 float surface_humidity_default;
+
124
+
125 bool message_flag;
126
-
127};
+
128 std::vector<std::string> radiation_bands;
+
129
+
131 std::vector<std::string> output_prim_data;
+
132
+
133};
-
128
-
129#endif
+
134
+
135#endif
EnergyBalanceModel
Energy balance model class.
Definition EnergyBalanceModel.h:23
-
EnergyBalanceModel::printDefaultValueReport
void printDefaultValueReport() const
Print a report detailing usage of default input values for all primitives in the Context.
Definition EnergyBalanceModel.cpp:357
+
EnergyBalanceModel::printDefaultValueReport
void printDefaultValueReport() const
Print a report detailing usage of default input values for all primitives in the Context.
Definition EnergyBalanceModel.cpp:363
EnergyBalanceModel::enableMessages
void enableMessages()
Enable standard output from this plug-in (default)
Definition EnergyBalanceModel.cpp:333
EnergyBalanceModel::addRadiationBand
void addRadiationBand(const char *band)
Add the label of a radiation band in the RadiationModel plug-in that should be used in calculation of...
Definition EnergyBalanceModel.cpp:341
-
EnergyBalanceModel::optionalOutputPrimitiveData
void optionalOutputPrimitiveData(const char *label)
Add optional output primitive data values to the Context.
Definition EnergyBalanceModel.cpp:347
+
EnergyBalanceModel::optionalOutputPrimitiveData
void optionalOutputPrimitiveData(const char *label)
Add optional output primitive data values to the Context.
Definition EnergyBalanceModel.cpp:353
EnergyBalanceModel::disableMessages
void disableMessages()
Disable standard output from this plug-in.
Definition EnergyBalanceModel.cpp:337
EnergyBalanceModel::run
void run()
Function to run the energy balance model for all primitives in the Context.
Definition EnergyBalanceModel.cu:118
diff --git a/doc/html/_i_o.html b/doc/html/_i_o.html index 6d5503827..4f5cfa955 100644 --- a/doc/html/_i_o.html +++ b/doc/html/_i_o.html @@ -38,7 +38,7 @@ @@ -225,9 +225,9 @@

helios::Context
Stores the state associated with simulation.
Definition Context.h:1882
helios::Context::loadTabularTimeseriesData
void loadTabularTimeseriesData(const std::string &data_file, const std::vector< std::string > &column_labels, const std::string &delimiter, const std::string &date_string_format="YYYYMMDD", uint headerlines=0)
Load tabular weather data from text file into timeseries.
Definition Context_fileIO.cpp:4544
-
helios::Context::queryTimeseriesData
float queryTimeseriesData(const char *label, const Date &date, const Time &time) const
Get a timeseries data point by specifying a date and time vector.
Definition Context.cpp:1889
- - +
helios::Context::queryTimeseriesData
float queryTimeseriesData(const char *label, const Date &date, const Time &time) const
Get a timeseries data point by specifying a date and time vector.
Definition Context.cpp:1884
+ +

The above example would read the comma-delimited file "../input/weatherfile.csv". Timeseries data would be added to the Context for values of "temperature", which could be queried based on this label.

Reading XML Files

@@ -270,9 +270,9 @@

}
helios::Context::loadPLY
std::vector< uint > loadPLY(const char *filename, bool silent=false)
Load geometry contained in a Stanford polygon file (.ply). Model will be placed at the origin with no...
Definition Context_fileIO.cpp:3370
-
helios::RGBcolor
R-G-B color vector.
Definition helios_vector_types.h:841
-
helios::SphericalCoord
Vector of spherical coordinates (elevation,azimuth)
Definition helios_vector_types.h:1468
-
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:502
+
helios::RGBcolor
R-G-B color vector.
Definition helios_vector_types.h:844
+
helios::SphericalCoord
Vector of spherical coordinates (elevation,azimuth)
Definition helios_vector_types.h:1471
+
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:503

There are other forms of the loadPLY function that allow for translation, rotation, and scaling of the entire PLY model.

Different applications may utilize different coordinate axes in .ply files. In computer graphics applications, it is common to define the y-axis as the up direction. Helios uses a z-up coordinate system. By default helios::Context::loadPLY() assumes that the coordinate system used when creating the .ply file is y-up. There is an optional argument helios::Context::loadPLY() that can allow you to easily define the up-axis.

The Blender software package (www.blender.org) can easily modify and convert most polygon file formats to .ply format. This page gives a tutorial on how to perform such conversions using Blender.

@@ -327,7 +327,7 @@

}
helios::Context::writePLY
void writePLY(const char *filename) const
Write geometry in the Context to a Stanford polygon file (.ply)
Definition Context_fileIO.cpp:3670
-
helios::Context::addPatch
uint addPatch()
Add new default Patch geometric primitive, which is centered at the origin (0,0,0),...
Definition Context.cpp:1207
+
helios::Context::addPatch
uint addPatch()
Add new default Patch geometric primitive, which is centered at the origin (0,0,0),...
Definition Context.cpp:1202

Writing OBJ (Wavefront) Files

Writing Wavefront OBJ files is similar to writing a PLY file, except that it will produce both a .obj file containing the geometry, and a .mtl file defining materials (colors, texture masks). For this reason, only the base file name with no extension is provided to the function.

diff --git a/doc/html/_input_output_8cpp.html b/doc/html/_input_output_8cpp.html index 9adcbefa7..cd4926022 100644 --- a/doc/html/_input_output_8cpp.html +++ b/doc/html/_input_output_8cpp.html @@ -38,7 +38,7 @@ @@ -138,7 +138,7 @@

-

Definition at line 274 of file InputOutput.cpp.

+

Definition at line 276 of file InputOutput.cpp.

diff --git a/doc/html/_input_output_8cpp_source.html b/doc/html/_input_output_8cpp_source.html index b0d844de9..075e20541 100644 --- a/doc/html/_input_output_8cpp_source.html +++ b/doc/html/_input_output_8cpp_source.html @@ -38,7 +38,7 @@

@@ -136,719 +136,721 @@
44 outstring += "Leaf(" + std::to_string(phytomer->leaf_size_max.at(petiole).front()*phytomer->current_leaf_scale_factor ) + "," + std::to_string( rad2deg(phytomer->leaf_rotation.at(petiole).front().pitch) ) + "," + std::to_string( rad2deg(phytomer->leaf_rotation.at(petiole).front().yaw) ) + "," + std::to_string( rad2deg(phytomer->leaf_rotation.at(petiole).front().roll) ) + ")";
45
46 if( shoot->childIDs.find(node_number)!=shoot->childIDs.end() ){
-
47 outstring = makeShootString(outstring, shoot_tree.at(shoot->childIDs.at(node_number)), shoot_tree );
-
48 }
-
49
-
50// }
+
47 for( int childID: shoot->childIDs.at(node_number) ) {
+
48 outstring = makeShootString(outstring, shoot_tree.at(childID), shoot_tree);
+
49 }
+
50 }
51
-
52 node_number++;
-
53 }
-
54
-
55 if(shoot->parent_shoot_ID != -1 ) {
-
56 outstring += "]";
-
57 }
-
58
-
59 return outstring;
+
52// }
+
53
+
54 node_number++;
+
55 }
+
56
+
57 if(shoot->parent_shoot_ID != -1 ) {
+
58 outstring += "]";
+
59 }
60
-
61}
+
61 return outstring;
62
-
63std::string PlantArchitecture::getPlantString(uint plantID) const{
+
63}
64
-
65 auto plant_shoot_tree = &plant_instances.at(plantID).shoot_tree;
+
65std::string PlantArchitecture::getPlantString(uint plantID) const{
66
-
67 std::string out_string;
+
67 auto plant_shoot_tree = &plant_instances.at(plantID).shoot_tree;
68
-
69 for( auto &shoot: *plant_shoot_tree ){
-
70 out_string = makeShootString(out_string, shoot, *plant_shoot_tree );
-
71 }
-
72
-
73 return out_string;
+
69 std::string out_string;
+
70
+
71 for( auto &shoot: *plant_shoot_tree ){
+
72 out_string = makeShootString(out_string, shoot, *plant_shoot_tree );
+
73 }
74
-
75}
+
75 return out_string;
76
-
77void PlantArchitecture::parseShootArgument(const std::string &shoot_argument, const std::map<std::string, PhytomerParameters> &phytomer_parameters, ShootParameters &shoot_parameters, AxisRotation &base_rotation, std::string &phytomer_label) {
+
77}
78
-
79 //shoot argument order {}:
-
80 // 1. shoot base pitch/insertion angle (degrees)
-
81 // 2. shoot base yaw angle (degrees)
-
82 // 3. shoot roll angle (degrees)
-
83 // 4. gravitropic curvature (degrees/meter)
-
84 // 5. [optional] phytomer parameters string
-
85
-
86 size_t pos_shoot_start = 0;
+
79void PlantArchitecture::parseShootArgument(const std::string &shoot_argument, const std::map<std::string, PhytomerParameters> &phytomer_parameters, ShootParameters &shoot_parameters, AxisRotation &base_rotation, std::string &phytomer_label) {
+
80
+
81 //shoot argument order {}:
+
82 // 1. shoot base pitch/insertion angle (degrees)
+
83 // 2. shoot base yaw angle (degrees)
+
84 // 3. shoot roll angle (degrees)
+
85 // 4. gravitropic curvature (degrees/meter)
+
86 // 5. [optional] phytomer parameters string
87
-
88 std::string s_argument = shoot_argument;
+
88 size_t pos_shoot_start = 0;
89
-
90 pos_shoot_start = s_argument.find(',');
-
91 if( pos_shoot_start == std::string::npos ){
-
92 helios_runtime_error("ERROR (PlantArchitecture::generatePlantFromString): Shoot brackets '{}' does not have the correct number of values given.");
-
93 }
-
94 float insertion_angle = std::stof(s_argument.substr(0, pos_shoot_start));
-
95 s_argument.erase(0, pos_shoot_start + 1);
-
96 base_rotation.pitch = deg2rad(insertion_angle);
-
97
-
98 pos_shoot_start = s_argument.find(',');
-
99 if( pos_shoot_start == std::string::npos ){
-
100 helios_runtime_error("ERROR (PlantArchitecture::generatePlantFromString): Shoot brackets '{}' does not have the correct number of values given.");
-
101 }
-
102 float shoot_yaw = std::stof(s_argument.substr(0, pos_shoot_start));
-
103 s_argument.erase(0, pos_shoot_start + 1);
-
104 base_rotation.yaw = deg2rad(shoot_yaw);
-
105
-
106 pos_shoot_start = s_argument.find(',');
-
107 if( pos_shoot_start == std::string::npos ){
-
108 helios_runtime_error("ERROR (PlantArchitecture::generatePlantFromString): Shoot brackets '{}' does not have the correct number of values given.");
-
109 }
-
110 float shoot_roll = std::stof(s_argument.substr(0, pos_shoot_start));
-
111 s_argument.erase(0, pos_shoot_start + 1);
-
112 base_rotation.roll = deg2rad(shoot_roll);
-
113
-
114 pos_shoot_start = s_argument.find(',');
-
115 if( pos_shoot_start == std::string::npos ){
-
116 helios_runtime_error("ERROR (PlantArchitecture::generatePlantFromString): Shoot brackets '{}' does not have the correct number of values given.");
-
117 }
-
118 float shoot_curvature = std::stof(s_argument.substr(0, pos_shoot_start));
-
119 s_argument.erase(0, pos_shoot_start + 1);
-
120 shoot_parameters.gravitropic_curvature = shoot_curvature;
-
121
-
122 if( pos_shoot_start != std::string::npos ) { //shoot type argument was given
-
123 pos_shoot_start = s_argument.find(',');
-
124 phytomer_label = s_argument.substr(0, pos_shoot_start);
-
125 s_argument.erase(0, pos_shoot_start + 1);
-
126 if (phytomer_parameters.find(phytomer_label) == phytomer_parameters.end()) {
-
127 helios_runtime_error("ERROR (PlantArchitecture::generatePlantFromString): Phytomer parameters with label " + phytomer_label + " was not provided to PlantArchitecture::generatePlantFromString().");
-
128 }
-
129 shoot_parameters.phytomer_parameters = phytomer_parameters.at(phytomer_label);
-
130 }else{ //shoot type argument not given - use first phytomer parameters in the map
-
131 phytomer_label = phytomer_parameters.begin()->first;
-
132 shoot_parameters.phytomer_parameters = phytomer_parameters.begin()->second;
-
133 }
-
134
-
135}
+
90 std::string s_argument = shoot_argument;
+
91
+
92 pos_shoot_start = s_argument.find(',');
+
93 if( pos_shoot_start == std::string::npos ){
+
94 helios_runtime_error("ERROR (PlantArchitecture::generatePlantFromString): Shoot brackets '{}' does not have the correct number of values given.");
+
95 }
+
96 float insertion_angle = std::stof(s_argument.substr(0, pos_shoot_start));
+
97 s_argument.erase(0, pos_shoot_start + 1);
+
98 base_rotation.pitch = deg2rad(insertion_angle);
+
99
+
100 pos_shoot_start = s_argument.find(',');
+
101 if( pos_shoot_start == std::string::npos ){
+
102 helios_runtime_error("ERROR (PlantArchitecture::generatePlantFromString): Shoot brackets '{}' does not have the correct number of values given.");
+
103 }
+
104 float shoot_yaw = std::stof(s_argument.substr(0, pos_shoot_start));
+
105 s_argument.erase(0, pos_shoot_start + 1);
+
106 base_rotation.yaw = deg2rad(shoot_yaw);
+
107
+
108 pos_shoot_start = s_argument.find(',');
+
109 if( pos_shoot_start == std::string::npos ){
+
110 helios_runtime_error("ERROR (PlantArchitecture::generatePlantFromString): Shoot brackets '{}' does not have the correct number of values given.");
+
111 }
+
112 float shoot_roll = std::stof(s_argument.substr(0, pos_shoot_start));
+
113 s_argument.erase(0, pos_shoot_start + 1);
+
114 base_rotation.roll = deg2rad(shoot_roll);
+
115
+
116 pos_shoot_start = s_argument.find(',');
+
117 if( pos_shoot_start == std::string::npos ){
+
118 helios_runtime_error("ERROR (PlantArchitecture::generatePlantFromString): Shoot brackets '{}' does not have the correct number of values given.");
+
119 }
+
120 float shoot_curvature = std::stof(s_argument.substr(0, pos_shoot_start));
+
121 s_argument.erase(0, pos_shoot_start + 1);
+
122 shoot_parameters.gravitropic_curvature = shoot_curvature;
+
123
+
124 if( pos_shoot_start != std::string::npos ) { //shoot type argument was given
+
125 pos_shoot_start = s_argument.find(',');
+
126 phytomer_label = s_argument.substr(0, pos_shoot_start);
+
127 s_argument.erase(0, pos_shoot_start + 1);
+
128 if (phytomer_parameters.find(phytomer_label) == phytomer_parameters.end()) {
+
129 helios_runtime_error("ERROR (PlantArchitecture::generatePlantFromString): Phytomer parameters with label " + phytomer_label + " was not provided to PlantArchitecture::generatePlantFromString().");
+
130 }
+
131 shoot_parameters.phytomer_parameters = phytomer_parameters.at(phytomer_label);
+
132 }else{ //shoot type argument not given - use first phytomer parameters in the map
+
133 phytomer_label = phytomer_parameters.begin()->first;
+
134 shoot_parameters.phytomer_parameters = phytomer_parameters.begin()->second;
+
135 }
136
-
137void PlantArchitecture::parseInternodeArgument(const std::string &internode_argument, float &internode_radius, float &internode_length, PhytomerParameters &phytomer_parameters) {
+
137}
138
-
139 //internode argument order Internode():
-
140 // 1. internode length (m)
-
141 // 2. internode radius (m)
-
142 // 3. internode pitch (degrees)
-
143 // 4. phyllotactic angle (degrees)
-
144
-
145 size_t pos_inode_start = 0;
+
139void PlantArchitecture::parseInternodeArgument(const std::string &internode_argument, float &internode_radius, float &internode_length, PhytomerParameters &phytomer_parameters) {
+
140
+
141 //internode argument order Internode():
+
142 // 1. internode length (m)
+
143 // 2. internode radius (m)
+
144 // 3. internode pitch (degrees)
+
145 // 4. phyllotactic angle (degrees)
146
-
147 std::string inode_argument = internode_argument;
+
147 size_t pos_inode_start = 0;
148
-
149 pos_inode_start = inode_argument.find(',');
-
150 if( pos_inode_start == std::string::npos ){
-
151 helios_runtime_error("ERROR (PlantArchitecture::generatePlantFromString): 'Internode()' does not have the correct number of values given.");
-
152 }
-
153 internode_length = std::stof(inode_argument.substr(0, pos_inode_start));
-
154 inode_argument.erase(0, pos_inode_start + 1);
-
155
-
156 pos_inode_start = inode_argument.find(',');
-
157 if( pos_inode_start == std::string::npos ){
-
158 helios_runtime_error("ERROR (PlantArchitecture::generatePlantFromString): 'Internode()' does not have the correct number of values given.");
-
159 }
-
160 internode_radius = std::stof(inode_argument.substr(0, pos_inode_start));
-
161 inode_argument.erase(0, pos_inode_start + 1);
-
162
-
163 pos_inode_start = inode_argument.find(',');
-
164 if( pos_inode_start == std::string::npos ){
-
165 helios_runtime_error("ERROR (PlantArchitecture::generatePlantFromString): 'Internode()' does not have the correct number of values given.");
-
166 }
-
167 float internode_pitch = std::stof(inode_argument.substr(0, pos_inode_start));
-
168 inode_argument.erase(0, pos_inode_start + 1);
-
169 phytomer_parameters.internode.pitch = internode_pitch;
-
170
-
171 pos_inode_start = inode_argument.find(',');
-
172 if( pos_inode_start != std::string::npos ){
-
173 helios_runtime_error("ERROR (PlantArchitecture::generatePlantFromString): 'Internode()' does not have the correct number of values given.");
-
174 }
-
175 float internode_phyllotaxis = std::stof(inode_argument.substr(0, pos_inode_start));
-
176 inode_argument.erase(0, pos_inode_start + 1);
-
177 phytomer_parameters.internode.phyllotactic_angle = internode_phyllotaxis;
-
178
-
179}
+
149 std::string inode_argument = internode_argument;
+
150
+
151 pos_inode_start = inode_argument.find(',');
+
152 if( pos_inode_start == std::string::npos ){
+
153 helios_runtime_error("ERROR (PlantArchitecture::generatePlantFromString): 'Internode()' does not have the correct number of values given.");
+
154 }
+
155 internode_length = std::stof(inode_argument.substr(0, pos_inode_start));
+
156 inode_argument.erase(0, pos_inode_start + 1);
+
157
+
158 pos_inode_start = inode_argument.find(',');
+
159 if( pos_inode_start == std::string::npos ){
+
160 helios_runtime_error("ERROR (PlantArchitecture::generatePlantFromString): 'Internode()' does not have the correct number of values given.");
+
161 }
+
162 internode_radius = std::stof(inode_argument.substr(0, pos_inode_start));
+
163 inode_argument.erase(0, pos_inode_start + 1);
+
164
+
165 pos_inode_start = inode_argument.find(',');
+
166 if( pos_inode_start == std::string::npos ){
+
167 helios_runtime_error("ERROR (PlantArchitecture::generatePlantFromString): 'Internode()' does not have the correct number of values given.");
+
168 }
+
169 float internode_pitch = std::stof(inode_argument.substr(0, pos_inode_start));
+
170 inode_argument.erase(0, pos_inode_start + 1);
+
171 phytomer_parameters.internode.pitch = internode_pitch;
+
172
+
173 pos_inode_start = inode_argument.find(',');
+
174 if( pos_inode_start != std::string::npos ){
+
175 helios_runtime_error("ERROR (PlantArchitecture::generatePlantFromString): 'Internode()' does not have the correct number of values given.");
+
176 }
+
177 float internode_phyllotaxis = std::stof(inode_argument.substr(0, pos_inode_start));
+
178 inode_argument.erase(0, pos_inode_start + 1);
+
179 phytomer_parameters.internode.phyllotactic_angle = internode_phyllotaxis;
180
-
181void PlantArchitecture::parsePetioleArgument(const std::string& petiole_argument, PhytomerParameters &phytomer_parameters ){
+
181}
182
-
183 //petiole argument order Petiole():
-
184 // 1. petiole length (m)
-
185 // 2. petiole radius (m)
-
186 // 3. petiole pitch (degrees)
-
187
-
188 if( petiole_argument.empty() ){
-
189 phytomer_parameters.petiole.length = 0;
-
190 return;
-
191 }
-
192
-
193 size_t pos_petiole_start = 0;
+
183void PlantArchitecture::parsePetioleArgument(const std::string& petiole_argument, PhytomerParameters &phytomer_parameters ){
+
184
+
185 //petiole argument order Petiole():
+
186 // 1. petiole length (m)
+
187 // 2. petiole radius (m)
+
188 // 3. petiole pitch (degrees)
+
189
+
190 if( petiole_argument.empty() ){
+
191 phytomer_parameters.petiole.length = 0;
+
192 return;
+
193 }
194
-
195 std::string pet_argument = petiole_argument;
+
195 size_t pos_petiole_start = 0;
196
-
197 pos_petiole_start = pet_argument.find(',');
-
198 if( pos_petiole_start == std::string::npos ){
-
199 helios_runtime_error("ERROR (PlantArchitecture::generatePlantFromString): 'Petiole()' does not have the correct number of values given.");
-
200 }
-
201 float petiole_length = std::stof(pet_argument.substr(0, pos_petiole_start));
-
202 pet_argument.erase(0, pos_petiole_start + 1);
-
203 phytomer_parameters.petiole.length = petiole_length;
-
204
-
205 pos_petiole_start = pet_argument.find(',');
-
206 if( pos_petiole_start == std::string::npos ){
-
207 helios_runtime_error("ERROR (PlantArchitecture::generatePlantFromString): 'Petiole()' does not have the correct number of values given.");
-
208 }
-
209 float petiole_radius = std::stof(pet_argument.substr(0, pos_petiole_start));
-
210 pet_argument.erase(0, pos_petiole_start + 1);
-
211 phytomer_parameters.petiole.radius = petiole_radius;
-
212
-
213 pos_petiole_start = pet_argument.find(',');
-
214 if( pos_petiole_start != std::string::npos ){
-
215 helios_runtime_error("ERROR (PlantArchitecture::generatePlantFromString): 'Petiole()' does not have the correct number of values given.");
-
216 }
-
217 float petiole_pitch = std::stof(pet_argument.substr(0, pos_petiole_start));
-
218 pet_argument.erase(0, pos_petiole_start + 1);
-
219 phytomer_parameters.petiole.pitch = petiole_pitch;
-
220
-
221}
+
197 std::string pet_argument = petiole_argument;
+
198
+
199 pos_petiole_start = pet_argument.find(',');
+
200 if( pos_petiole_start == std::string::npos ){
+
201 helios_runtime_error("ERROR (PlantArchitecture::generatePlantFromString): 'Petiole()' does not have the correct number of values given.");
+
202 }
+
203 float petiole_length = std::stof(pet_argument.substr(0, pos_petiole_start));
+
204 pet_argument.erase(0, pos_petiole_start + 1);
+
205 phytomer_parameters.petiole.length = petiole_length;
+
206
+
207 pos_petiole_start = pet_argument.find(',');
+
208 if( pos_petiole_start == std::string::npos ){
+
209 helios_runtime_error("ERROR (PlantArchitecture::generatePlantFromString): 'Petiole()' does not have the correct number of values given.");
+
210 }
+
211 float petiole_radius = std::stof(pet_argument.substr(0, pos_petiole_start));
+
212 pet_argument.erase(0, pos_petiole_start + 1);
+
213 phytomer_parameters.petiole.radius = petiole_radius;
+
214
+
215 pos_petiole_start = pet_argument.find(',');
+
216 if( pos_petiole_start != std::string::npos ){
+
217 helios_runtime_error("ERROR (PlantArchitecture::generatePlantFromString): 'Petiole()' does not have the correct number of values given.");
+
218 }
+
219 float petiole_pitch = std::stof(pet_argument.substr(0, pos_petiole_start));
+
220 pet_argument.erase(0, pos_petiole_start + 1);
+
221 phytomer_parameters.petiole.pitch = petiole_pitch;
222
-
223void PlantArchitecture::parseLeafArgument(const std::string& leaf_argument, PhytomerParameters &phytomer_parameters ){
+
223}
224
-
225 //leaf argument order Leaf():
-
226 // 1. leaf scale factor
-
227 // 2. leaf pitch (degrees)
-
228 // 3. leaf yaw (degrees)
-
229 // 4. leaf roll (degrees)
-
230
-
231 if( leaf_argument.empty() ){
-
232 phytomer_parameters.leaf.prototype_scale = 0;
-
233 return;
-
234 }
-
235
-
236 size_t pos_leaf_start = 0;
+
225void PlantArchitecture::parseLeafArgument(const std::string& leaf_argument, PhytomerParameters &phytomer_parameters ){
+
226
+
227 //leaf argument order Leaf():
+
228 // 1. leaf scale factor
+
229 // 2. leaf pitch (degrees)
+
230 // 3. leaf yaw (degrees)
+
231 // 4. leaf roll (degrees)
+
232
+
233 if( leaf_argument.empty() ){
+
234 phytomer_parameters.leaf.prototype_scale = 0;
+
235 return;
+
236 }
237
-
238 std::string l_argument = leaf_argument;
+
238 size_t pos_leaf_start = 0;
239
-
240 pos_leaf_start = l_argument.find(',');
-
241 if( pos_leaf_start == std::string::npos ){
-
242 helios_runtime_error("ERROR (PlantArchitecture::generatePlantFromString): 'Leaf()' does not have the correct number of values given.");
-
243 }
-
244 float leaf_scale = std::stof(l_argument.substr(0, pos_leaf_start));
-
245 l_argument.erase(0, pos_leaf_start + 1);
-
246 phytomer_parameters.leaf.prototype_scale = leaf_scale;
-
247
-
248 pos_leaf_start = l_argument.find(',');
-
249 if( pos_leaf_start == std::string::npos ){
-
250 helios_runtime_error("ERROR (PlantArchitecture::generatePlantFromString): 'Leaf()' does not have the correct number of values given.");
-
251 }
-
252 float leaf_pitch = std::stof(l_argument.substr(0, pos_leaf_start));
-
253 l_argument.erase(0, pos_leaf_start + 1);
-
254 phytomer_parameters.leaf.pitch = leaf_pitch;
-
255
-
256 pos_leaf_start = l_argument.find(',');
-
257 if( pos_leaf_start == std::string::npos ){
-
258 helios_runtime_error("ERROR (PlantArchitecture::generatePlantFromString): 'Leaf()' does not have the correct number of values given.");
-
259 }
-
260 float leaf_yaw = std::stof(l_argument.substr(0, pos_leaf_start));
-
261 l_argument.erase(0, pos_leaf_start + 1);
-
262 phytomer_parameters.leaf.yaw = leaf_yaw;
-
263
-
264 pos_leaf_start = l_argument.find(',');
-
265 if( pos_leaf_start != std::string::npos ){
-
266 helios_runtime_error("ERROR (PlantArchitecture::generatePlantFromString): 'Leaf()' does not have the correct number of values given.");
-
267 }
-
268 float leaf_roll = std::stof(l_argument.substr(0, pos_leaf_start));
-
269 l_argument.erase(0, pos_leaf_start + 1);
-
270 phytomer_parameters.leaf.roll = leaf_roll;
-
271
-
272}
+
240 std::string l_argument = leaf_argument;
+
241
+
242 pos_leaf_start = l_argument.find(',');
+
243 if( pos_leaf_start == std::string::npos ){
+
244 helios_runtime_error("ERROR (PlantArchitecture::generatePlantFromString): 'Leaf()' does not have the correct number of values given.");
+
245 }
+
246 float leaf_scale = std::stof(l_argument.substr(0, pos_leaf_start));
+
247 l_argument.erase(0, pos_leaf_start + 1);
+
248 phytomer_parameters.leaf.prototype_scale = leaf_scale;
+
249
+
250 pos_leaf_start = l_argument.find(',');
+
251 if( pos_leaf_start == std::string::npos ){
+
252 helios_runtime_error("ERROR (PlantArchitecture::generatePlantFromString): 'Leaf()' does not have the correct number of values given.");
+
253 }
+
254 float leaf_pitch = std::stof(l_argument.substr(0, pos_leaf_start));
+
255 l_argument.erase(0, pos_leaf_start + 1);
+
256 phytomer_parameters.leaf.pitch = leaf_pitch;
+
257
+
258 pos_leaf_start = l_argument.find(',');
+
259 if( pos_leaf_start == std::string::npos ){
+
260 helios_runtime_error("ERROR (PlantArchitecture::generatePlantFromString): 'Leaf()' does not have the correct number of values given.");
+
261 }
+
262 float leaf_yaw = std::stof(l_argument.substr(0, pos_leaf_start));
+
263 l_argument.erase(0, pos_leaf_start + 1);
+
264 phytomer_parameters.leaf.yaw = leaf_yaw;
+
265
+
266 pos_leaf_start = l_argument.find(',');
+
267 if( pos_leaf_start != std::string::npos ){
+
268 helios_runtime_error("ERROR (PlantArchitecture::generatePlantFromString): 'Leaf()' does not have the correct number of values given.");
+
269 }
+
270 float leaf_roll = std::stof(l_argument.substr(0, pos_leaf_start));
+
271 l_argument.erase(0, pos_leaf_start + 1);
+
272 phytomer_parameters.leaf.roll = leaf_roll;
273
-
274size_t findShootClosingBracket(const std::string &lstring) {
+
274}
275
-
276 size_t pos_close = std::string::npos;
-
277 size_t pos_open = lstring.find_first_of('[', 0);
-
278 if (pos_open == std::string::npos) {
-
279 return pos_close;
-
280 }
-
281
-
282 size_t pos = pos_open;
-
283 int count = 1;
-
284 while (count > 0) {
-
285 pos++;
-
286 if (lstring[pos] == '[') {
-
287 count++;
-
288 } else if (lstring[pos] == ']') {
-
289 count--;
-
290 }
-
291 if (pos == lstring.length()) {
-
292 return pos_close;
-
293 }
-
294 }
-
295 if (count == 0) {
-
296 pos_close = pos;
-
297 }
-
298 return pos_close; // Return the position of the closing bracket
-
299}
-
300
-
301void PlantArchitecture::parseStringShoot(const std::string &LString_shoot, uint plantID, int parentID, uint parent_node, const std::map<std::string, PhytomerParameters> &phytomer_parameters, ShootParameters &shoot_parameters) {
+
276size_t findShootClosingBracket(const std::string &lstring) {
+
277
+
278 size_t pos_close = std::string::npos;
+
279 size_t pos_open = lstring.find_first_of('[', 0);
+
280 if (pos_open == std::string::npos) {
+
281 return pos_close;
+
282 }
+
283
+
284 size_t pos = pos_open;
+
285 int count = 1;
+
286 while (count > 0) {
+
287 pos++;
+
288 if (lstring[pos] == '[') {
+
289 count++;
+
290 } else if (lstring[pos] == ']') {
+
291 count--;
+
292 }
+
293 if (pos == lstring.length()) {
+
294 return pos_close;
+
295 }
+
296 }
+
297 if (count == 0) {
+
298 pos_close = pos;
+
299 }
+
300 return pos_close; // Return the position of the closing bracket
+
301}
302
-
303 std::string lstring_tobeparsed = LString_shoot;
+
303void PlantArchitecture::parseStringShoot(const std::string &LString_shoot, uint plantID, int parentID, uint parent_node, const std::map<std::string, PhytomerParameters> &phytomer_parameters, ShootParameters &shoot_parameters) {
304
-
305 size_t pos_inode_start = 0;
-
306 std::string inode_delimiter = "Internode(";
-
307 std::string petiole_delimiter = "Petiole(";
-
308 std::string leaf_delimiter = "Leaf(";
-
309 bool base_shoot = true;
-
310 uint baseID;
-
311 AxisRotation shoot_base_rotation;
-
312
-
313 //parse shoot arguments
-
314 if( LString_shoot.front() != '{' ){
-
315 helios_runtime_error("ERROR (PlantArchitecture::parseStringShoot): Shoot string is not formatted correctly. All shoots should start with a curly bracket containing two arguments {X,Y}.");
-
316 }
-
317 size_t pos_shoot_end = lstring_tobeparsed.find('}');
-
318 std::string shoot_argument = lstring_tobeparsed.substr(1, pos_shoot_end - 1);
-
319 std::string phytomer_label;
-
320 parseShootArgument(shoot_argument, phytomer_parameters, shoot_parameters, shoot_base_rotation, phytomer_label);
-
321 lstring_tobeparsed.erase(0, pos_shoot_end + 1);
-
322
-
323 uint shoot_node_count = 0;
-
324 while ((pos_inode_start = lstring_tobeparsed.find(inode_delimiter)) != std::string::npos) {
-
325
-
326 if( pos_inode_start!=0 ){
-
327 helios_runtime_error("ERROR (PlantArchitecture::parseStringShoot): Shoot string is not formatted correctly.");
-
328 }
-
329
-
330 size_t pos_inode_end = lstring_tobeparsed.find(')');
-
331 std::string inode_argument = lstring_tobeparsed.substr(pos_inode_start + inode_delimiter.length(), pos_inode_end - pos_inode_start - inode_delimiter.length());
-
332 float internode_radius = 0;
-
333 float internode_length = 0;
-
334 parseInternodeArgument(inode_argument, internode_radius, internode_length, shoot_parameters.phytomer_parameters);
-
335 lstring_tobeparsed.erase(0, pos_inode_end + 1);
-
336
-
337 size_t pos_petiole_start = lstring_tobeparsed.find(petiole_delimiter);
-
338 size_t pos_petiole_end = lstring_tobeparsed.find(')');
-
339 std::string petiole_argument;
-
340 if( pos_petiole_start==0 ){
-
341 petiole_argument = lstring_tobeparsed.substr(pos_petiole_start + petiole_delimiter.length(), pos_petiole_end - pos_petiole_start - petiole_delimiter.length());
-
342 }else{
-
343 petiole_argument = "";
-
344 }
-
345 parsePetioleArgument(petiole_argument, shoot_parameters.phytomer_parameters);
-
346 if( pos_petiole_start==0 ) {
-
347 lstring_tobeparsed.erase(0, pos_petiole_end + 1);
-
348 }
-
349
-
350 size_t pos_leaf_start = lstring_tobeparsed.find(leaf_delimiter);
-
351 size_t pos_leaf_end = lstring_tobeparsed.find(')');
-
352 std::string leaf_argument;
-
353 if( pos_leaf_start==0 ){
-
354 leaf_argument = lstring_tobeparsed.substr(pos_leaf_start + leaf_delimiter.length(), pos_leaf_end - pos_leaf_start - leaf_delimiter.length());
-
355 }else{
-
356 leaf_argument = "";
-
357 }
-
358 parseLeafArgument(leaf_argument, shoot_parameters.phytomer_parameters);
-
359 if( pos_leaf_start==0 ) {
-
360 lstring_tobeparsed.erase(0, pos_leaf_end + 1);
-
361 }
-
362
-
363 //override phytomer creation function
-
364 shoot_parameters.phytomer_parameters.phytomer_creation_function = nullptr;
-
365
-
366 if( base_shoot ){ //this is the first phytomer of the shoot
-
367 defineShootType("shoot_"+phytomer_label, shoot_parameters);
-
368
-
369 if( parentID<0 ) { //this is the first shoot of the plant
-
370 baseID = addBaseStemShoot(plantID, 1, shoot_base_rotation, internode_radius, internode_length, 1.f, 1.f, 0, "shoot_" + phytomer_label);
-
371 }else{ //this is a child of an existing shoot
-
372 baseID = addChildShoot(plantID, parentID, parent_node, 1, shoot_base_rotation, internode_radius, internode_length, 1.f, 1.f, 0, "shoot_" + phytomer_label, 0);
-
373 }
-
374
-
375 base_shoot = false;
-
376 }else{
-
377 appendPhytomerToShoot(plantID, baseID, shoot_parameters.phytomer_parameters, internode_radius, internode_length, 1, 1);
-
378 }
-
379
-
380 while( !lstring_tobeparsed.empty() && lstring_tobeparsed.substr(0,1) == "[" ){
-
381 size_t pos_shoot_bracket_end = findShootClosingBracket(lstring_tobeparsed);
-
382 if( pos_shoot_bracket_end == std::string::npos ){
-
383 helios_runtime_error("ERROR (PlantArchitecture::parseStringShoot): Shoot string is not formatted correctly. Shoots must be closed with a ']'.");
-
384 }
-
385 std::string lstring_child = lstring_tobeparsed.substr(1, pos_shoot_bracket_end-1 );
-
386 parseStringShoot(lstring_child, plantID, (int) baseID, shoot_node_count, phytomer_parameters, shoot_parameters);
-
387 lstring_tobeparsed.erase(0, pos_shoot_bracket_end + 1);
-
388 }
-
389
-
390 shoot_node_count++;
-
391 }
-
392
-
393}
+
305 std::string lstring_tobeparsed = LString_shoot;
+
306
+
307 size_t pos_inode_start = 0;
+
308 std::string inode_delimiter = "Internode(";
+
309 std::string petiole_delimiter = "Petiole(";
+
310 std::string leaf_delimiter = "Leaf(";
+
311 bool base_shoot = true;
+
312 uint baseID;
+
313 AxisRotation shoot_base_rotation;
+
314
+
315 //parse shoot arguments
+
316 if( LString_shoot.front() != '{' ){
+
317 helios_runtime_error("ERROR (PlantArchitecture::parseStringShoot): Shoot string is not formatted correctly. All shoots should start with a curly bracket containing two arguments {X,Y}.");
+
318 }
+
319 size_t pos_shoot_end = lstring_tobeparsed.find('}');
+
320 std::string shoot_argument = lstring_tobeparsed.substr(1, pos_shoot_end - 1);
+
321 std::string phytomer_label;
+
322 parseShootArgument(shoot_argument, phytomer_parameters, shoot_parameters, shoot_base_rotation, phytomer_label);
+
323 lstring_tobeparsed.erase(0, pos_shoot_end + 1);
+
324
+
325 uint shoot_node_count = 0;
+
326 while ((pos_inode_start = lstring_tobeparsed.find(inode_delimiter)) != std::string::npos) {
+
327
+
328 if( pos_inode_start!=0 ){
+
329 helios_runtime_error("ERROR (PlantArchitecture::parseStringShoot): Shoot string is not formatted correctly.");
+
330 }
+
331
+
332 size_t pos_inode_end = lstring_tobeparsed.find(')');
+
333 std::string inode_argument = lstring_tobeparsed.substr(pos_inode_start + inode_delimiter.length(), pos_inode_end - pos_inode_start - inode_delimiter.length());
+
334 float internode_radius = 0;
+
335 float internode_length = 0;
+
336 parseInternodeArgument(inode_argument, internode_radius, internode_length, shoot_parameters.phytomer_parameters);
+
337 lstring_tobeparsed.erase(0, pos_inode_end + 1);
+
338
+
339 size_t pos_petiole_start = lstring_tobeparsed.find(petiole_delimiter);
+
340 size_t pos_petiole_end = lstring_tobeparsed.find(')');
+
341 std::string petiole_argument;
+
342 if( pos_petiole_start==0 ){
+
343 petiole_argument = lstring_tobeparsed.substr(pos_petiole_start + petiole_delimiter.length(), pos_petiole_end - pos_petiole_start - petiole_delimiter.length());
+
344 }else{
+
345 petiole_argument = "";
+
346 }
+
347 parsePetioleArgument(petiole_argument, shoot_parameters.phytomer_parameters);
+
348 if( pos_petiole_start==0 ) {
+
349 lstring_tobeparsed.erase(0, pos_petiole_end + 1);
+
350 }
+
351
+
352 size_t pos_leaf_start = lstring_tobeparsed.find(leaf_delimiter);
+
353 size_t pos_leaf_end = lstring_tobeparsed.find(')');
+
354 std::string leaf_argument;
+
355 if( pos_leaf_start==0 ){
+
356 leaf_argument = lstring_tobeparsed.substr(pos_leaf_start + leaf_delimiter.length(), pos_leaf_end - pos_leaf_start - leaf_delimiter.length());
+
357 }else{
+
358 leaf_argument = "";
+
359 }
+
360 parseLeafArgument(leaf_argument, shoot_parameters.phytomer_parameters);
+
361 if( pos_leaf_start==0 ) {
+
362 lstring_tobeparsed.erase(0, pos_leaf_end + 1);
+
363 }
+
364
+
365 //override phytomer creation function
+
366 shoot_parameters.phytomer_parameters.phytomer_creation_function = nullptr;
+
367
+
368 if( base_shoot ){ //this is the first phytomer of the shoot
+
369 defineShootType("shoot_"+phytomer_label, shoot_parameters);
+
370
+
371 if( parentID<0 ) { //this is the first shoot of the plant
+
372 baseID = addBaseStemShoot(plantID, 1, shoot_base_rotation, internode_radius, internode_length, 1.f, 1.f, 0, "shoot_" + phytomer_label);
+
373 }else{ //this is a child of an existing shoot
+
374 baseID = addChildShoot(plantID, parentID, parent_node, 1, shoot_base_rotation, internode_radius, internode_length, 1.f, 1.f, 0, "shoot_" + phytomer_label, 0);
+
375 }
+
376
+
377 base_shoot = false;
+
378 }else{
+
379 appendPhytomerToShoot(plantID, baseID, shoot_parameters.phytomer_parameters, internode_radius, internode_length, 1, 1);
+
380 }
+
381
+
382 while( !lstring_tobeparsed.empty() && lstring_tobeparsed.substr(0,1) == "[" ){
+
383 size_t pos_shoot_bracket_end = findShootClosingBracket(lstring_tobeparsed);
+
384 if( pos_shoot_bracket_end == std::string::npos ){
+
385 helios_runtime_error("ERROR (PlantArchitecture::parseStringShoot): Shoot string is not formatted correctly. Shoots must be closed with a ']'.");
+
386 }
+
387 std::string lstring_child = lstring_tobeparsed.substr(1, pos_shoot_bracket_end-1 );
+
388 parseStringShoot(lstring_child, plantID, (int) baseID, shoot_node_count, phytomer_parameters, shoot_parameters);
+
389 lstring_tobeparsed.erase(0, pos_shoot_bracket_end + 1);
+
390 }
+
391
+
392 shoot_node_count++;
+
393 }
394
-
395uint PlantArchitecture::generatePlantFromString(const std::string &generation_string, const PhytomerParameters &phytomer_parameters) {
-
396 std::map<std::string,PhytomerParameters> phytomer_parameters_map;
-
397 phytomer_parameters_map["default"] = phytomer_parameters;
-
398 return generatePlantFromString(generation_string, phytomer_parameters_map);
-
399}
-
400
-
401uint PlantArchitecture::generatePlantFromString(const std::string &generation_string, const std::map<std::string,PhytomerParameters> &phytomer_parameters) {
+
395}
+
396
+
397uint PlantArchitecture::generatePlantFromString(const std::string &generation_string, const PhytomerParameters &phytomer_parameters) {
+
398 std::map<std::string,PhytomerParameters> phytomer_parameters_map;
+
399 phytomer_parameters_map["default"] = phytomer_parameters;
+
400 return generatePlantFromString(generation_string, phytomer_parameters_map);
+
401}
402
-
403 //check that first characters are 'Internode'
-
404 if(generation_string.front() != '{'){
-
405 helios_runtime_error("ERROR (PlantArchitecture::generatePlantFromString): First character of string must be '{'");
-
406 }
-
407
-
408 ShootParameters shoot_parameters(context_ptr->getRandomGenerator());
-
409 shoot_parameters.max_nodes = 200;
-
410 shoot_parameters.vegetative_bud_break_probability = 0;
-
411 shoot_parameters.vegetative_bud_break_time = 0;
-
412 shoot_parameters.phyllochron = 0;
-
413
-
414 //assign default phytomer parameters. This can be changed later if the optional phytomer parameters label is provided in the shoot argument '{}'.
-
415 if( phytomer_parameters.empty() ){
-
416 helios_runtime_error("ERROR (PlantArchitecture::generatePlantFromString): Phytomer parameters must be provided.");
-
417 }
-
418
-
419 uint plantID;
+
403uint PlantArchitecture::generatePlantFromString(const std::string &generation_string, const std::map<std::string,PhytomerParameters> &phytomer_parameters) {
+
404
+
405 //check that first characters are 'Internode'
+
406 if(generation_string.front() != '{'){
+
407 helios_runtime_error("ERROR (PlantArchitecture::generatePlantFromString): First character of string must be '{'");
+
408 }
+
409
+
410 ShootParameters shoot_parameters(context_ptr->getRandomGenerator());
+
411 shoot_parameters.max_nodes = 200;
+
412 shoot_parameters.vegetative_bud_break_probability = 0;
+
413 shoot_parameters.vegetative_bud_break_time = 0;
+
414 shoot_parameters.phyllochron = 0;
+
415
+
416 //assign default phytomer parameters. This can be changed later if the optional phytomer parameters label is provided in the shoot argument '{}'.
+
417 if( phytomer_parameters.empty() ){
+
418 helios_runtime_error("ERROR (PlantArchitecture::generatePlantFromString): Phytomer parameters must be provided.");
+
419 }
420
-
421 plantID = addPlantInstance(nullorigin, 0);
+
421 uint plantID;
422
-
423 size_t pos_first_child_shoot = generation_string.find('[');
+
423 plantID = addPlantInstance(nullorigin, 0);
424
-
425 if( pos_first_child_shoot==std::string::npos ) {
-
426 pos_first_child_shoot = generation_string.length();
-
427 }
-
428
-
429 parseStringShoot(generation_string, plantID, -1, 0, phytomer_parameters, shoot_parameters);
+
425 size_t pos_first_child_shoot = generation_string.find('[');
+
426
+
427 if( pos_first_child_shoot==std::string::npos ) {
+
428 pos_first_child_shoot = generation_string.length();
+
429 }
430
-
431
-
432 return plantID;
+
431 parseStringShoot(generation_string, plantID, -1, 0, phytomer_parameters, shoot_parameters);
+
432
433
-
434}
+
434 return plantID;
435
-
436void PlantArchitecture::writePlantStructureXML(uint plantID, const std::string &filename) const{
+
436}
437
-
438 if( plant_instances.find(plantID)==plant_instances.end() ){
-
439 helios_runtime_error("ERROR (PlantArchitecture::writePlantStructureXML): Plant ID " + std::to_string(plantID) + " does not exist.");
-
440 }
-
441
-
442 //\todo Check the extension of 'filename' and add .xml if needed
+
438void PlantArchitecture::writePlantStructureXML(uint plantID, const std::string &filename) const{
+
439
+
440 if( plant_instances.find(plantID)==plant_instances.end() ){
+
441 helios_runtime_error("ERROR (PlantArchitecture::writePlantStructureXML): Plant ID " + std::to_string(plantID) + " does not exist.");
+
442 }
443
-
444 std::ofstream output_xml(filename);
+
444 //\todo Check the extension of 'filename' and add .xml if needed
445
-
446 if( !output_xml.is_open() ){
-
447 helios_runtime_error("ERROR (PlantArchitecture::writePlantStructureXML): Could not open file " + filename + " for writing. Make sure the directory exists and is writable.");
-
448 }
-
449
-
450 output_xml << "<?xml version=\"1.0\" encoding=\"UTF-8\"?>" << std::endl;
-
451 output_xml << "<helios>" << std::endl;
-
452 output_xml << "\t<plant_instance ID=\"" << plantID << "\">" << std::endl;
-
453
-
454 output_xml << "\t\t<base_position> " << plant_instances.at(plantID).base_position.x << " " << plant_instances.at(plantID).base_position.y << " " << plant_instances.at(plantID).base_position.z << " </base_position>" << std::endl;
-
455 output_xml << "\t\t<plant_age> " << plant_instances.at(plantID).current_age << " </plant_age>" << std::endl;
-
456
-
457 for( auto& shoot : plant_instances.at(plantID).shoot_tree ) {
+
446 std::ofstream output_xml(filename);
+
447
+
448 if( !output_xml.is_open() ){
+
449 helios_runtime_error("ERROR (PlantArchitecture::writePlantStructureXML): Could not open file " + filename + " for writing. Make sure the directory exists and is writable.");
+
450 }
+
451
+
452 output_xml << "<?xml version=\"1.0\" encoding=\"UTF-8\"?>" << std::endl;
+
453 output_xml << "<helios>" << std::endl;
+
454 output_xml << "\t<plant_instance ID=\"" << plantID << "\">" << std::endl;
+
455
+
456 output_xml << "\t\t<base_position> " << plant_instances.at(plantID).base_position.x << " " << plant_instances.at(plantID).base_position.y << " " << plant_instances.at(plantID).base_position.z << " </base_position>" << std::endl;
+
457 output_xml << "\t\t<plant_age> " << plant_instances.at(plantID).current_age << " </plant_age>" << std::endl;
458
-
459 output_xml << "\t\t<shoot ID=\"" << shoot->ID << "\">" << std::endl;
-
460 output_xml << "\t\t\t<shoot_type_label> " << shoot->shoot_type_label << " </shoot_type_label>" << std::endl;
-
461 output_xml << "\t\t\t<parent_shoot_ID> " << shoot->parent_shoot_ID << " </parent_shoot_ID>" << std::endl;
-
462 output_xml << "\t\t\t<parent_node_index> " << shoot->parent_node_index << " </parent_node_index>" << std::endl;
-
463 output_xml << "\t\t\t<parent_petiole_index> " << shoot->parent_petiole_index << " </parent_petiole_index>" << std::endl;
-
464 output_xml << "\t\t\t<base_rotation> " << rad2deg(shoot->base_rotation.pitch) << " " << rad2deg(shoot->base_rotation.yaw) << " " << rad2deg(shoot->base_rotation.roll) << " </base_rotation>" << std::endl;
-
465
-
466 for (auto &phytomer: shoot->phytomers) {
+
459 for( auto& shoot : plant_instances.at(plantID).shoot_tree ) {
+
460
+
461 output_xml << "\t\t<shoot ID=\"" << shoot->ID << "\">" << std::endl;
+
462 output_xml << "\t\t\t<shoot_type_label> " << shoot->shoot_type_label << " </shoot_type_label>" << std::endl;
+
463 output_xml << "\t\t\t<parent_shoot_ID> " << shoot->parent_shoot_ID << " </parent_shoot_ID>" << std::endl;
+
464 output_xml << "\t\t\t<parent_node_index> " << shoot->parent_node_index << " </parent_node_index>" << std::endl;
+
465 output_xml << "\t\t\t<parent_petiole_index> " << shoot->parent_petiole_index << " </parent_petiole_index>" << std::endl;
+
466 output_xml << "\t\t\t<base_rotation> " << rad2deg(shoot->base_rotation.pitch) << " " << rad2deg(shoot->base_rotation.yaw) << " " << rad2deg(shoot->base_rotation.roll) << " </base_rotation>" << std::endl;
467
-
468 output_xml << "\t\t\t<phytomer>" << std::endl;
-
469 output_xml << "\t\t\t\t<internode>" << std::endl;
-
470 output_xml << "\t\t\t\t\t<internode_length>" << phytomer->getInternodeLength() << "</internode_length>" << std::endl;
-
471 output_xml << "\t\t\t\t\t<internode_radius>" << phytomer->getInternodeRadius() << "</internode_radius>" << std::endl;
-
472 output_xml << "\t\t\t\t\t<internode_pitch>" << rad2deg(phytomer->internode_pitch) << "</internode_pitch>" << std::endl;
-
473 output_xml << "\t\t\t\t\t<internode_phyllotactic_angle>" << rad2deg(phytomer->internode_phyllotactic_angle) << "</internode_phyllotactic_angle>" << std::endl;
-
474
-
475 for (uint petiole = 0; petiole < phytomer->petiole_length.size(); petiole++) {
+
468 for (auto &phytomer: shoot->phytomers) {
+
469
+
470 output_xml << "\t\t\t<phytomer>" << std::endl;
+
471 output_xml << "\t\t\t\t<internode>" << std::endl;
+
472 output_xml << "\t\t\t\t\t<internode_length>" << phytomer->getInternodeLength() << "</internode_length>" << std::endl;
+
473 output_xml << "\t\t\t\t\t<internode_radius>" << phytomer->getInternodeRadius() << "</internode_radius>" << std::endl;
+
474 output_xml << "\t\t\t\t\t<internode_pitch>" << rad2deg(phytomer->internode_pitch) << "</internode_pitch>" << std::endl;
+
475 output_xml << "\t\t\t\t\t<internode_phyllotactic_angle>" << rad2deg(phytomer->internode_phyllotactic_angle) << "</internode_phyllotactic_angle>" << std::endl;
476
-
477 output_xml << "\t\t\t\t\t<petiole>" << std::endl;
-
478 output_xml << "\t\t\t\t\t\t<petiole_length>" << phytomer->petiole_length.at(petiole) << "</petiole_length>" << std::endl;
-
479 output_xml << "\t\t\t\t\t\t<petiole_radius>" << phytomer->petiole_radii.at(petiole).front() << "</petiole_radius>" << std::endl;
-
480 output_xml << "\t\t\t\t\t\t<petiole_pitch>" << rad2deg(phytomer->petiole_pitch) << "</petiole_pitch>" << std::endl;
-
481 output_xml << "\t\t\t\t\t\t<petiole_curvature>" << phytomer->petiole_curvature << "</petiole_curvature>" << std::endl;
-
482 if( phytomer->leaf_rotation.at(petiole).size()==1 ){ //not compound leaf
-
483 output_xml << "\t\t\t\t\t\t<leaflet_scale>" << 1.0 << "</leaflet_scale>" << std::endl;
-
484 }else {
-
485 float tip_ind = floor(float(phytomer->leaf_rotation.at(petiole).size() - 1) / 2.f);
-
486 output_xml << "\t\t\t\t\t\t<leaflet_scale>" << phytomer->leaf_size_max.at(petiole).at(int(tip_ind-1)) / max(phytomer->leaf_size_max.at(petiole)) << "</leaflet_scale>" << std::endl;
-
487 }
-
488
-
489 for( uint leaf=0; leaf < phytomer->leaf_rotation.at(petiole).size(); leaf++ ){
-
490 output_xml << "\t\t\t\t\t\t<leaf>" << std::endl;
-
491 output_xml << "\t\t\t\t\t\t\t<leaf_scale>" << phytomer->leaf_size_max.at(petiole).at(leaf)*phytomer->current_leaf_scale_factor << "</leaf_scale>" << std::endl;
-
492 output_xml << "\t\t\t\t\t\t\t<leaf_pitch>" << rad2deg(phytomer->leaf_rotation.at(petiole).at(leaf).pitch) << "</leaf_pitch>" << std::endl;
-
493 output_xml << "\t\t\t\t\t\t\t<leaf_yaw>" << rad2deg(phytomer->leaf_rotation.at(petiole).at(leaf).yaw) << "</leaf_yaw>" << std::endl;
-
494 output_xml << "\t\t\t\t\t\t\t<leaf_roll>" << rad2deg(phytomer->leaf_rotation.at(petiole).at(leaf).roll) << "</leaf_roll>" << std::endl;
-
495 output_xml << "\t\t\t\t\t\t</leaf>" << std::endl;
-
496 }
-
497
-
498 output_xml << "\t\t\t\t\t</petiole>" << std::endl;
-
499 }
-
500 output_xml << "\t\t\t\t</internode>" << std::endl;
-
501 output_xml << "\t\t\t</phytomer>" << std::endl;
-
502 }
-
503 output_xml << "\t\t</shoot>" << std::endl;
-
504 }
-
505 output_xml << "\t</plant_instance>" << std::endl;
-
506 output_xml << "</helios>" << std::endl;
-
507 output_xml.close();
-
508
-
509
-
510}
+
477 for (uint petiole = 0; petiole < phytomer->petiole_length.size(); petiole++) {
+
478
+
479 output_xml << "\t\t\t\t\t<petiole>" << std::endl;
+
480 output_xml << "\t\t\t\t\t\t<petiole_length>" << phytomer->petiole_length.at(petiole) << "</petiole_length>" << std::endl;
+
481 output_xml << "\t\t\t\t\t\t<petiole_radius>" << phytomer->petiole_radii.at(petiole).front() << "</petiole_radius>" << std::endl;
+
482 output_xml << "\t\t\t\t\t\t<petiole_pitch>" << rad2deg(phytomer->petiole_pitch) << "</petiole_pitch>" << std::endl;
+
483 output_xml << "\t\t\t\t\t\t<petiole_curvature>" << phytomer->petiole_curvature << "</petiole_curvature>" << std::endl;
+
484 if( phytomer->leaf_rotation.at(petiole).size()==1 ){ //not compound leaf
+
485 output_xml << "\t\t\t\t\t\t<leaflet_scale>" << 1.0 << "</leaflet_scale>" << std::endl;
+
486 }else {
+
487 float tip_ind = floor(float(phytomer->leaf_rotation.at(petiole).size() - 1) / 2.f);
+
488 output_xml << "\t\t\t\t\t\t<leaflet_scale>" << phytomer->leaf_size_max.at(petiole).at(int(tip_ind-1)) / max(phytomer->leaf_size_max.at(petiole)) << "</leaflet_scale>" << std::endl;
+
489 }
+
490
+
491 for( uint leaf=0; leaf < phytomer->leaf_rotation.at(petiole).size(); leaf++ ){
+
492 output_xml << "\t\t\t\t\t\t<leaf>" << std::endl;
+
493 output_xml << "\t\t\t\t\t\t\t<leaf_scale>" << phytomer->leaf_size_max.at(petiole).at(leaf)*phytomer->current_leaf_scale_factor << "</leaf_scale>" << std::endl;
+
494 output_xml << "\t\t\t\t\t\t\t<leaf_pitch>" << rad2deg(phytomer->leaf_rotation.at(petiole).at(leaf).pitch) << "</leaf_pitch>" << std::endl;
+
495 output_xml << "\t\t\t\t\t\t\t<leaf_yaw>" << rad2deg(phytomer->leaf_rotation.at(petiole).at(leaf).yaw) << "</leaf_yaw>" << std::endl;
+
496 output_xml << "\t\t\t\t\t\t\t<leaf_roll>" << rad2deg(phytomer->leaf_rotation.at(petiole).at(leaf).roll) << "</leaf_roll>" << std::endl;
+
497 output_xml << "\t\t\t\t\t\t</leaf>" << std::endl;
+
498 }
+
499
+
500 output_xml << "\t\t\t\t\t</petiole>" << std::endl;
+
501 }
+
502 output_xml << "\t\t\t\t</internode>" << std::endl;
+
503 output_xml << "\t\t\t</phytomer>" << std::endl;
+
504 }
+
505 output_xml << "\t\t</shoot>" << std::endl;
+
506 }
+
507 output_xml << "\t</plant_instance>" << std::endl;
+
508 output_xml << "</helios>" << std::endl;
+
509 output_xml.close();
+
510
511
-
512std::vector<uint> PlantArchitecture::readPlantStructureXML( const std::string &filename, bool quiet){
+
512}
513
-
514 if( !quiet ) {
-
515 std::cout << "Loading plant architecture XML file: " << filename << "..." << std::flush;
-
516 }
-
517
-
518 std::string fn = filename;
-
519 std::string ext = getFileExtension(filename);
-
520 if( ext != ".xml" && ext != ".XML" ) {
-
521 helios_runtime_error("failed.\n File " + fn + " is not XML format.");
-
522 }
-
523
-
524 std::vector<uint> plantIDs;
+
514std::vector<uint> PlantArchitecture::readPlantStructureXML( const std::string &filename, bool quiet){
+
515
+
516 if( !quiet ) {
+
517 std::cout << "Loading plant architecture XML file: " << filename << "..." << std::flush;
+
518 }
+
519
+
520 std::string fn = filename;
+
521 std::string ext = getFileExtension(filename);
+
522 if( ext != ".xml" && ext != ".XML" ) {
+
523 helios_runtime_error("failed.\n File " + fn + " is not XML format.");
+
524 }
525
-
526 // Using "pugixml" parser. See pugixml.org
-
527 pugi::xml_document xmldoc;
-
528
-
529 //load file
-
530 pugi::xml_parse_result load_result = xmldoc.load_file(filename.c_str());
-
531
-
532 //error checking
-
533 if (!load_result){
-
534 helios_runtime_error("ERROR (Context::readPlantStructureXML): Could not parse " + std::string(filename) + ":\nError description: " + load_result.description() );
-
535 }
-
536
-
537 pugi::xml_node helios = xmldoc.child("helios");
+
526 std::vector<uint> plantIDs;
+
527
+
528 // Using "pugixml" parser. See pugixml.org
+
529 pugi::xml_document xmldoc;
+
530
+
531 //load file
+
532 pugi::xml_parse_result load_result = xmldoc.load_file(filename.c_str());
+
533
+
534 //error checking
+
535 if (!load_result){
+
536 helios_runtime_error("ERROR (Context::readPlantStructureXML): Could not parse " + std::string(filename) + ":\nError description: " + load_result.description() );
+
537 }
538
-
539 pugi::xml_node node;
-
540 std::string node_string;
-
541
-
542 if( helios.empty() ){
-
543 if( !quiet ) {
-
544 std::cout << "failed." << std::endl;
-
545 }
-
546 helios_runtime_error("ERROR (Context::readPlantStructureXML): XML file must have tag '<helios> ... </helios>' bounding all other tags.");
-
547 }
-
548
-
549 size_t phytomer_count = 0;
+
539 pugi::xml_node helios = xmldoc.child("helios");
+
540
+
541 pugi::xml_node node;
+
542 std::string node_string;
+
543
+
544 if( helios.empty() ){
+
545 if( !quiet ) {
+
546 std::cout << "failed." << std::endl;
+
547 }
+
548 helios_runtime_error("ERROR (Context::readPlantStructureXML): XML file must have tag '<helios> ... </helios>' bounding all other tags.");
+
549 }
550
-
551 std::map<int,int> shoot_ID_mapping;
+
551 size_t phytomer_count = 0;
552
-
553 for (pugi::xml_node plant = helios.child("plant_instance"); plant; plant = plant.next_sibling("plant_instance")) {
+
553 std::map<int,int> shoot_ID_mapping;
554
-
555 int plantID = std::stoi(plant.attribute("ID").value());
+
555 for (pugi::xml_node plant = helios.child("plant_instance"); plant; plant = plant.next_sibling("plant_instance")) {
556
-
557 // base position
-
558 node_string = "base_position";
-
559 vec3 base_position = parse_xml_tag_vec3(plant.child(node_string.c_str()), node_string, "PlantArchitecture::readPlantStructureXML");
-
560
-
561 // plant age
-
562 node_string = "plant_age";
-
563 float plant_age = parse_xml_tag_float(plant.child(node_string.c_str()), node_string, "PlantArchitecture::readPlantStructureXML");
-
564
-
565 plantID = addPlantInstance(base_position, plant_age);
-
566 plantIDs.push_back(plantID);
-
567
-
568 int current_shoot_ID;
+
557 int plantID = std::stoi(plant.attribute("ID").value());
+
558
+
559 // base position
+
560 node_string = "base_position";
+
561 vec3 base_position = parse_xml_tag_vec3(plant.child(node_string.c_str()), node_string, "PlantArchitecture::readPlantStructureXML");
+
562
+
563 // plant age
+
564 node_string = "plant_age";
+
565 float plant_age = parse_xml_tag_float(plant.child(node_string.c_str()), node_string, "PlantArchitecture::readPlantStructureXML");
+
566
+
567 plantID = addPlantInstance(base_position, plant_age);
+
568 plantIDs.push_back(plantID);
569
-
570 for (pugi::xml_node shoot = plant.child("shoot"); shoot; shoot = shoot.next_sibling("shoot")) {
+
570 int current_shoot_ID;
571
-
572 int shootID = std::stoi(shoot.attribute("ID").value());
-
573 bool base_shoot = true;
-
574
-
575 // shoot type
-
576 node_string = "shoot_type_label";
-
577 std::string shoot_type_label = parse_xml_tag_string(shoot.child(node_string.c_str()), node_string, "PlantArchitecture::readPlantStructureXML");
-
578
-
579 // parent shoot ID
-
580 node_string = "parent_shoot_ID";
-
581 int parent_shoot_ID = parse_xml_tag_int(shoot.child(node_string.c_str()), node_string, "PlantArchitecture::readPlantStructureXML");
-
582
-
583 // parent node index
-
584 node_string = "parent_node_index";
-
585 int parent_node_index = parse_xml_tag_int(shoot.child(node_string.c_str()), node_string, "PlantArchitecture::readPlantStructureXML");
-
586
-
587 // parent petiole index
-
588 node_string = "parent_petiole_index";
-
589 int parent_petiole_index = parse_xml_tag_int(shoot.child(node_string.c_str()), node_string, "PlantArchitecture::readPlantStructureXML");
-
590
-
591 // base rotation
-
592 node_string = "base_rotation";
-
593 vec3 base_rot = parse_xml_tag_vec3(shoot.child(node_string.c_str()), node_string, "PlantArchitecture::readPlantStructureXML");
-
594 AxisRotation base_rotation(deg2rad(base_rot.x), deg2rad(base_rot.y), deg2rad(base_rot.z));
-
595
-
596 for (pugi::xml_node phytomer = shoot.child("phytomer"); phytomer; phytomer = phytomer.next_sibling("phytomer")) {
+
572 for (pugi::xml_node shoot = plant.child("shoot"); shoot; shoot = shoot.next_sibling("shoot")) {
+
573
+
574 int shootID = std::stoi(shoot.attribute("ID").value());
+
575 bool base_shoot = true;
+
576
+
577 // shoot type
+
578 node_string = "shoot_type_label";
+
579 std::string shoot_type_label = parse_xml_tag_string(shoot.child(node_string.c_str()), node_string, "PlantArchitecture::readPlantStructureXML");
+
580
+
581 // parent shoot ID
+
582 node_string = "parent_shoot_ID";
+
583 int parent_shoot_ID = parse_xml_tag_int(shoot.child(node_string.c_str()), node_string, "PlantArchitecture::readPlantStructureXML");
+
584
+
585 // parent node index
+
586 node_string = "parent_node_index";
+
587 int parent_node_index = parse_xml_tag_int(shoot.child(node_string.c_str()), node_string, "PlantArchitecture::readPlantStructureXML");
+
588
+
589 // parent petiole index
+
590 node_string = "parent_petiole_index";
+
591 int parent_petiole_index = parse_xml_tag_int(shoot.child(node_string.c_str()), node_string, "PlantArchitecture::readPlantStructureXML");
+
592
+
593 // base rotation
+
594 node_string = "base_rotation";
+
595 vec3 base_rot = parse_xml_tag_vec3(shoot.child(node_string.c_str()), node_string, "PlantArchitecture::readPlantStructureXML");
+
596 AxisRotation base_rotation(deg2rad(base_rot.x), deg2rad(base_rot.y), deg2rad(base_rot.z));
597
-
598 pugi::xml_node internode = phytomer.child("internode");
+
598 for (pugi::xml_node phytomer = shoot.child("phytomer"); phytomer; phytomer = phytomer.next_sibling("phytomer")) {
599
-
600 // internode length
-
601 node_string = "internode_length";
-
602 float internode_length = parse_xml_tag_float(internode.child(node_string.c_str()), node_string, "PlantArchitecture::readPlantStructureXML");
-
603
-
604 // internode radius
-
605 node_string = "internode_radius";
-
606 float internode_radius = parse_xml_tag_float(internode.child(node_string.c_str()), node_string, "PlantArchitecture::readPlantStructureXML");
-
607
-
608 // internode pitch
-
609 node_string = "internode_pitch";
-
610 float internode_pitch = parse_xml_tag_float(internode.child(node_string.c_str()), node_string, "PlantArchitecture::readPlantStructureXML");
-
611
-
612 // internode phyllotactic angle
-
613 node_string = "internode_phyllotactic_angle";
-
614 float internode_phyllotactic_angle = parse_xml_tag_float(internode.child(node_string.c_str()), node_string, "PlantArchitecture::readPlantStructureXML");
-
615
-
616 float petiole_length;
-
617 float petiole_radius;
-
618 float petiole_pitch;
-
619 float petiole_curvature;
-
620 float leaflet_scale;
-
621 std::vector<std::vector<float>> leaf_scale; //first index is petiole within internode; second index is leaf within petiole
-
622 std::vector<std::vector<float>> leaf_pitch;
-
623 std::vector<std::vector<float>> leaf_yaw;
-
624 std::vector<std::vector<float>> leaf_roll;
-
625 for (pugi::xml_node petiole = internode.child("petiole"); petiole; petiole = petiole.next_sibling("petiole")) {
-
626
-
627 // petiole length
-
628 node_string = "petiole_length";
-
629 petiole_length = parse_xml_tag_float(petiole.child(node_string.c_str()), node_string, "PlantArchitecture::readPlantStructureXML");
-
630
-
631 // petiole radius
-
632 node_string = "petiole_radius";
-
633 petiole_radius = parse_xml_tag_float(petiole.child(node_string.c_str()), node_string, "PlantArchitecture::readPlantStructureXML");
-
634
-
635 // petiole pitch
-
636 node_string = "petiole_pitch";
-
637 petiole_pitch = parse_xml_tag_float(petiole.child(node_string.c_str()), node_string, "PlantArchitecture::readPlantStructureXML");
-
638
-
639 // petiole curvature
-
640 node_string = "petiole_curvature";
-
641 petiole_curvature = parse_xml_tag_float(petiole.child(node_string.c_str()), node_string, "PlantArchitecture::readPlantStructureXML");
-
642
-
643 // leaflet scale factor
-
644 node_string = "leaflet_scale";
-
645 leaflet_scale = parse_xml_tag_float(petiole.child(node_string.c_str()), node_string, "PlantArchitecture::readPlantStructureXML");
-
646
-
647 leaf_scale.resize(leaf_scale.size() + 1);
-
648 leaf_pitch.resize(leaf_pitch.size() + 1);
-
649 leaf_yaw.resize(leaf_yaw.size() + 1);
-
650 leaf_roll.resize(leaf_roll.size() + 1);
-
651 for (pugi::xml_node leaf = petiole.child("leaf"); leaf; leaf = leaf.next_sibling("leaf")) {
-
652
-
653 // leaf scale factor
-
654 node_string = "leaf_scale";
-
655 leaf_scale.back().push_back( parse_xml_tag_float(leaf.child(node_string.c_str()), node_string, "PlantArchitecture::readPlantStructureXML") );
-
656
-
657 // leaf pitch
-
658 node_string = "leaf_pitch";
-
659 leaf_pitch.back().push_back( parse_xml_tag_float(leaf.child(node_string.c_str()), node_string, "PlantArchitecture::readPlantStructureXML") );
-
660
-
661 // leaf yaw
-
662 node_string = "leaf_yaw";
-
663 leaf_yaw.back().push_back( parse_xml_tag_float(leaf.child(node_string.c_str()), node_string, "PlantArchitecture::readPlantStructureXML") );
-
664
-
665 // leaf roll
-
666 node_string = "leaf_roll";
-
667 leaf_roll.back().push_back( parse_xml_tag_float(leaf.child(node_string.c_str()), node_string, "PlantArchitecture::readPlantStructureXML") );
-
668
-
669 }
-
670 } //petioles
-
671
-
672 if( shoot_types.find(shoot_type_label)==shoot_types.end() ){
-
673 helios_runtime_error("ERROR (PlantArchitecture::readPlantStructureXML): Shoot type " + shoot_type_label + " not found in shoot types.");
-
674 }
-
675
-
676
-
677 ShootParameters shoot_parameters = getCurrentShootParameters(shoot_type_label);
+
600 pugi::xml_node internode = phytomer.child("internode");
+
601
+
602 // internode length
+
603 node_string = "internode_length";
+
604 float internode_length = parse_xml_tag_float(internode.child(node_string.c_str()), node_string, "PlantArchitecture::readPlantStructureXML");
+
605
+
606 // internode radius
+
607 node_string = "internode_radius";
+
608 float internode_radius = parse_xml_tag_float(internode.child(node_string.c_str()), node_string, "PlantArchitecture::readPlantStructureXML");
+
609
+
610 // internode pitch
+
611 node_string = "internode_pitch";
+
612 float internode_pitch = parse_xml_tag_float(internode.child(node_string.c_str()), node_string, "PlantArchitecture::readPlantStructureXML");
+
613
+
614 // internode phyllotactic angle
+
615 node_string = "internode_phyllotactic_angle";
+
616 float internode_phyllotactic_angle = parse_xml_tag_float(internode.child(node_string.c_str()), node_string, "PlantArchitecture::readPlantStructureXML");
+
617
+
618 float petiole_length;
+
619 float petiole_radius;
+
620 float petiole_pitch;
+
621 float petiole_curvature;
+
622 float leaflet_scale;
+
623 std::vector<std::vector<float>> leaf_scale; //first index is petiole within internode; second index is leaf within petiole
+
624 std::vector<std::vector<float>> leaf_pitch;
+
625 std::vector<std::vector<float>> leaf_yaw;
+
626 std::vector<std::vector<float>> leaf_roll;
+
627 for (pugi::xml_node petiole = internode.child("petiole"); petiole; petiole = petiole.next_sibling("petiole")) {
+
628
+
629 // petiole length
+
630 node_string = "petiole_length";
+
631 petiole_length = parse_xml_tag_float(petiole.child(node_string.c_str()), node_string, "PlantArchitecture::readPlantStructureXML");
+
632
+
633 // petiole radius
+
634 node_string = "petiole_radius";
+
635 petiole_radius = parse_xml_tag_float(petiole.child(node_string.c_str()), node_string, "PlantArchitecture::readPlantStructureXML");
+
636
+
637 // petiole pitch
+
638 node_string = "petiole_pitch";
+
639 petiole_pitch = parse_xml_tag_float(petiole.child(node_string.c_str()), node_string, "PlantArchitecture::readPlantStructureXML");
+
640
+
641 // petiole curvature
+
642 node_string = "petiole_curvature";
+
643 petiole_curvature = parse_xml_tag_float(petiole.child(node_string.c_str()), node_string, "PlantArchitecture::readPlantStructureXML");
+
644
+
645 // leaflet scale factor
+
646 node_string = "leaflet_scale";
+
647 leaflet_scale = parse_xml_tag_float(petiole.child(node_string.c_str()), node_string, "PlantArchitecture::readPlantStructureXML");
+
648
+
649 leaf_scale.resize(leaf_scale.size() + 1);
+
650 leaf_pitch.resize(leaf_pitch.size() + 1);
+
651 leaf_yaw.resize(leaf_yaw.size() + 1);
+
652 leaf_roll.resize(leaf_roll.size() + 1);
+
653 for (pugi::xml_node leaf = petiole.child("leaf"); leaf; leaf = leaf.next_sibling("leaf")) {
+
654
+
655 // leaf scale factor
+
656 node_string = "leaf_scale";
+
657 leaf_scale.back().push_back( parse_xml_tag_float(leaf.child(node_string.c_str()), node_string, "PlantArchitecture::readPlantStructureXML") );
+
658
+
659 // leaf pitch
+
660 node_string = "leaf_pitch";
+
661 leaf_pitch.back().push_back( parse_xml_tag_float(leaf.child(node_string.c_str()), node_string, "PlantArchitecture::readPlantStructureXML") );
+
662
+
663 // leaf yaw
+
664 node_string = "leaf_yaw";
+
665 leaf_yaw.back().push_back( parse_xml_tag_float(leaf.child(node_string.c_str()), node_string, "PlantArchitecture::readPlantStructureXML") );
+
666
+
667 // leaf roll
+
668 node_string = "leaf_roll";
+
669 leaf_roll.back().push_back( parse_xml_tag_float(leaf.child(node_string.c_str()), node_string, "PlantArchitecture::readPlantStructureXML") );
+
670
+
671 }
+
672 } //petioles
+
673
+
674 if( shoot_types.find(shoot_type_label)==shoot_types.end() ){
+
675 helios_runtime_error("ERROR (PlantArchitecture::readPlantStructureXML): Shoot type " + shoot_type_label + " not found in shoot types.");
+
676 }
+
677
678
-
679 shoot_parameters.phytomer_parameters.phytomer_creation_function = nullptr;
+
679 ShootParameters shoot_parameters = getCurrentShootParameters(shoot_type_label);
680
-
681 shoot_parameters.phytomer_parameters.internode.pitch = internode_pitch;
-
682 shoot_parameters.phytomer_parameters.internode.phyllotactic_angle = internode_phyllotactic_angle;
-
683
-
684 shoot_parameters.phytomer_parameters.petiole.length = petiole_length;
-
685 shoot_parameters.phytomer_parameters.petiole.radius = petiole_radius;
-
686 shoot_parameters.phytomer_parameters.petiole.pitch = petiole_pitch;
-
687 shoot_parameters.phytomer_parameters.petiole.curvature = petiole_curvature;
-
688
-
689 float tip_ind = floor(float(leaf_scale.front().size() - 1) / 2.f);
-
690 shoot_parameters.phytomer_parameters.leaf.prototype_scale = leaf_scale.front().at(tip_ind);
-
691 shoot_parameters.phytomer_parameters.leaf.pitch = 0;
-
692 shoot_parameters.phytomer_parameters.leaf.yaw = 0;
-
693 shoot_parameters.phytomer_parameters.leaf.roll = 0;
-
694 shoot_parameters.phytomer_parameters.leaf.leaflet_scale = leaflet_scale;
-
695
-
696 std::string shoot_label = "shoot_" + std::to_string(phytomer_count);
-
697 defineShootType( shoot_label, shoot_parameters);
-
698
-
699 if( base_shoot ){
+
681 shoot_parameters.phytomer_parameters.phytomer_creation_function = nullptr;
+
682
+
683 shoot_parameters.phytomer_parameters.internode.pitch = internode_pitch;
+
684 shoot_parameters.phytomer_parameters.internode.phyllotactic_angle = internode_phyllotactic_angle;
+
685
+
686 shoot_parameters.phytomer_parameters.petiole.length = petiole_length;
+
687 shoot_parameters.phytomer_parameters.petiole.radius = petiole_radius;
+
688 shoot_parameters.phytomer_parameters.petiole.pitch = petiole_pitch;
+
689 shoot_parameters.phytomer_parameters.petiole.curvature = petiole_curvature;
+
690
+
691 float tip_ind = floor(float(leaf_scale.front().size() - 1) / 2.f);
+
692 shoot_parameters.phytomer_parameters.leaf.prototype_scale = leaf_scale.front().at(tip_ind);
+
693 shoot_parameters.phytomer_parameters.leaf.pitch = 0;
+
694 shoot_parameters.phytomer_parameters.leaf.yaw = 0;
+
695 shoot_parameters.phytomer_parameters.leaf.roll = 0;
+
696 shoot_parameters.phytomer_parameters.leaf.leaflet_scale = leaflet_scale;
+
697
+
698 std::string shoot_label = "shoot_" + std::to_string(phytomer_count);
+
699 defineShootType( shoot_label, shoot_parameters);
700
-
701 if( parent_shoot_ID<0 ) { //this is the first shoot of the plant
-
702 current_shoot_ID = addBaseStemShoot(plantID, 1, base_rotation, internode_radius, internode_length, 1.f, 1.f, 0, shoot_label);
-
703 shoot_ID_mapping[shootID] = current_shoot_ID;
-
704 }else{ //this is a child of an existing shoot
-
705 current_shoot_ID = addChildShoot(plantID, shoot_ID_mapping.at(parent_shoot_ID), parent_node_index, 1, base_rotation, internode_radius, internode_length, 1.f, 1.f, 0, shoot_label, parent_petiole_index);
-
706 shoot_ID_mapping[shootID] = current_shoot_ID;
-
707 }
-
708
-
709 base_shoot = false;
-
710 }else{
-
711 appendPhytomerToShoot(plantID, current_shoot_ID, shoot_parameters.phytomer_parameters, internode_radius, internode_length, 1, 1);
-
712 }
-
713
-
714 //rotate leaves
-
715 auto phytomer_ptr = plant_instances.at(plantID).shoot_tree.at(current_shoot_ID)->phytomers.back();
-
716 for( int petiole = 0; petiole<phytomer_ptr->leaf_rotation.size(); petiole++ ){
-
717 for( int leaf=0; leaf<phytomer_ptr->leaf_rotation.at(petiole).size(); leaf++ ){
-
718 phytomer_ptr->rotateLeaf(petiole, leaf, make_AxisRotation(deg2rad(leaf_pitch.at(petiole).at(leaf)), deg2rad(leaf_yaw.at(petiole).at(leaf)), deg2rad(-leaf_roll.at(petiole).at(leaf))));
-
719 }
-
720 }
-
721
-
722 phytomer_count++;
-
723 } //phytomers
-
724
-
725 } //shoots
+
701 if( base_shoot ){
+
702
+
703 if( parent_shoot_ID<0 ) { //this is the first shoot of the plant
+
704 current_shoot_ID = addBaseStemShoot(plantID, 1, base_rotation, internode_radius, internode_length, 1.f, 1.f, 0, shoot_label);
+
705 shoot_ID_mapping[shootID] = current_shoot_ID;
+
706 }else{ //this is a child of an existing shoot
+
707 current_shoot_ID = addChildShoot(plantID, shoot_ID_mapping.at(parent_shoot_ID), parent_node_index, 1, base_rotation, internode_radius, internode_length, 1.f, 1.f, 0, shoot_label, parent_petiole_index);
+
708 shoot_ID_mapping[shootID] = current_shoot_ID;
+
709 }
+
710
+
711 base_shoot = false;
+
712 }else{
+
713 appendPhytomerToShoot(plantID, current_shoot_ID, shoot_parameters.phytomer_parameters, internode_radius, internode_length, 1, 1);
+
714 }
+
715
+
716 //rotate leaves
+
717 auto phytomer_ptr = plant_instances.at(plantID).shoot_tree.at(current_shoot_ID)->phytomers.back();
+
718 for( int petiole = 0; petiole<phytomer_ptr->leaf_rotation.size(); petiole++ ){
+
719 for( int leaf=0; leaf<phytomer_ptr->leaf_rotation.at(petiole).size(); leaf++ ){
+
720 phytomer_ptr->rotateLeaf(petiole, leaf, make_AxisRotation(deg2rad(leaf_pitch.at(petiole).at(leaf)), deg2rad(leaf_yaw.at(petiole).at(leaf)), deg2rad(-leaf_roll.at(petiole).at(leaf))));
+
721 }
+
722 }
+
723
+
724 phytomer_count++;
+
725 } //phytomers
726
-
727 } //plant instances
+
727 } //shoots
728
-
729 if( !quiet ) {
-
730 std::cout << "done." << std::endl;
-
731 }
-
732 return plantIDs;
-
733
-
734}
+
729 } //plant instances
+
730
+
731 if( !quiet ) {
+
732 std::cout << "done." << std::endl;
+
733 }
+
734 return plantIDs;
+
735
+
736}
-
PlantArchitecture::addPlantInstance
uint addPlantInstance(const helios::vec3 &base_position, float current_age)
Create an instance of a plant.
Definition PlantArchitecture.cpp:2558
-
PlantArchitecture::addChildShoot
uint addChildShoot(uint plantID, int parent_shoot_ID, uint parent_node_index, uint current_node_number, const AxisRotation &shoot_base_rotation, float internode_radius, float internode_length_max, float internode_length_scale_factor_fraction, float leaf_scale_factor_fraction, float radius_taper, const std::string &shoot_type_label, uint petiole_index=0)
Manually add a child shoot at the axillary bud of a phytomer.
Definition PlantArchitecture.cpp:1943
-
PlantArchitecture::appendPhytomerToShoot
int appendPhytomerToShoot(uint plantID, uint shootID, const PhytomerParameters &phytomer_parameters, float internode_radius, float internode_length_max, float internode_length_scale_factor_fraction, float leaf_scale_factor_fraction)
Add a new phytomer at the terminal bud of a shoot.
Definition PlantArchitecture.cpp:2025
-
PlantArchitecture::getCurrentShootParameters
std::map< std::string, ShootParameters > getCurrentShootParameters()
Get the shoot parameters structure for all shoot types in the current plant model.
Definition PlantLibrary.cpp:85
-
PlantArchitecture::addBaseStemShoot
uint addBaseStemShoot(uint plantID, uint current_node_number, const AxisRotation &base_rotation, float internode_radius, float internode_length_max, float internode_length_scale_factor_fraction, float leaf_scale_factor_fraction, float radius_taper, const std::string &shoot_type_label)
Define the stem/trunk shoot (base of plant) to start a new plant. This requires a plant instance has ...
Definition PlantArchitecture.cpp:1866
-
PlantArchitecture::defineShootType
void defineShootType(const std::string &shoot_type_label, const ShootParameters &shoot_params)
Define a new shoot type based on a set of ShootParameters.
Definition PlantArchitecture.cpp:236
+
PlantArchitecture::addPlantInstance
uint addPlantInstance(const helios::vec3 &base_position, float current_age)
Create an instance of a plant.
Definition PlantArchitecture.cpp:2568
+
PlantArchitecture::addChildShoot
uint addChildShoot(uint plantID, int parent_shoot_ID, uint parent_node_index, uint current_node_number, const AxisRotation &shoot_base_rotation, float internode_radius, float internode_length_max, float internode_length_scale_factor_fraction, float leaf_scale_factor_fraction, float radius_taper, const std::string &shoot_type_label, uint petiole_index=0)
Manually add a child shoot at the axillary bud of a phytomer.
Definition PlantArchitecture.cpp:1976
+
PlantArchitecture::appendPhytomerToShoot
int appendPhytomerToShoot(uint plantID, uint shootID, const PhytomerParameters &phytomer_parameters, float internode_radius, float internode_length_max, float internode_length_scale_factor_fraction, float leaf_scale_factor_fraction)
Add a new phytomer at the terminal bud of a shoot.
Definition PlantArchitecture.cpp:2058
+
PlantArchitecture::getCurrentShootParameters
std::map< std::string, ShootParameters > getCurrentShootParameters()
Get the shoot parameters structure for all shoot types in the current plant model.
Definition PlantLibrary.cpp:93
+
PlantArchitecture::addBaseStemShoot
uint addBaseStemShoot(uint plantID, uint current_node_number, const AxisRotation &base_rotation, float internode_radius, float internode_length_max, float internode_length_scale_factor_fraction, float leaf_scale_factor_fraction, float radius_taper, const std::string &shoot_type_label)
Define the stem/trunk shoot (base of plant) to start a new plant. This requires a plant instance has ...
Definition PlantArchitecture.cpp:1899
+
PlantArchitecture::defineShootType
void defineShootType(const std::string &shoot_type_label, const ShootParameters &shoot_params)
Define a new shoot type based on a set of ShootParameters.
Definition PlantArchitecture.cpp:235
helios::Context::getRandomGenerator
std::minstd_rand0 * getRandomGenerator()
Get the random number generator engine.
Definition Context.cpp:47
helios::parse_xml_tag_float
float parse_xml_tag_float(const pugi::xml_node &node, const std::string &tag, const std::string &calling_function)
Parse an XML tag containing a float value.
Definition global.cpp:872
helios::parse_xml_tag_vec3
vec3 parse_xml_tag_vec3(const pugi::xml_node &node, const std::string &tag, const std::string &calling_function)
Parse an XML tag containing a vec3 value (i.e., three space delimited floats)
Definition global.cpp:896
-
helios::getFileExtension
std::string getFileExtension(const std::string &filepath)
Parse a file string to get the extension.
Definition global.cpp:2991
+
helios::getFileExtension
std::string getFileExtension(const std::string &filepath)
Parse a file string to get the extension.
Definition global.cpp:2993
helios::helios_runtime_error
void helios_runtime_error(const std::string &error_message)
Function to throw a runtime error.
Definition global.cpp:29
helios::parse_xml_tag_string
std::string parse_xml_tag_string(const pugi::xml_node &node, const std::string &tag, const std::string &calling_function)
Parse an XML tag containing a string.
Definition global.cpp:908
helios::parse_xml_tag_int
int parse_xml_tag_int(const pugi::xml_node &node, const std::string &tag, const std::string &calling_function)
Parse an XML tag containing an integer value.
Definition global.cpp:860
helios::rad2deg
float rad2deg(float rad)
Convert radians to degrees.
Definition global.cpp:580
helios::deg2rad
float deg2rad(float deg)
Convert degrees to radians.
Definition global.cpp:576
helios::max
float max(const std::vector< float > &vect)
Maximum value of a vector of floats.
Definition global.cpp:1064
- - -
PhytomerParameters::phytomer_creation_function
void(* phytomer_creation_function)(std::shared_ptr< Phytomer > phytomer_ptr, uint shoot_node_index, uint parent_shoot_node_index, uint shoot_max_nodes, float plant_age)
Definition PlantArchitecture.h:483
- -
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:502
-
helios::vec3::x
float x
First element in vector.
Definition helios_vector_types.h:506
-
helios::vec3::z
float z
Third element in vector.
Definition helios_vector_types.h:510
-
helios::vec3::y
float y
Second element in vector.
Definition helios_vector_types.h:508
+ + +
PhytomerParameters::phytomer_creation_function
void(* phytomer_creation_function)(std::shared_ptr< Phytomer > phytomer_ptr, uint shoot_node_index, uint parent_shoot_node_index, uint shoot_max_nodes, float plant_age)
Definition PlantArchitecture.h:496
+ +
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:503
+
helios::vec3::x
float x
First element in vector.
Definition helios_vector_types.h:507
+
helios::vec3::z
float z
Third element in vector.
Definition helios_vector_types.h:511
+
helios::vec3::y
float y
Second element in vector.
Definition helios_vector_types.h:509
diff --git a/doc/html/_leaf_optics_8cpp.html b/doc/html/_leaf_optics_8cpp.html index a4b5be4cc..31b1bc05c 100644 --- a/doc/html/_leaf_optics_8cpp.html +++ b/doc/html/_leaf_optics_8cpp.html @@ -38,7 +38,7 @@
diff --git a/doc/html/_leaf_optics_8cpp_source.html b/doc/html/_leaf_optics_8cpp_source.html index 3ab5e9aba..aefb528c4 100644 --- a/doc/html/_leaf_optics_8cpp_source.html +++ b/doc/html/_leaf_optics_8cpp_source.html @@ -38,7 +38,7 @@ @@ -524,12 +524,12 @@
LeafOptics::disableMessages
void disableMessages()
Disable command-line output messages from this plug-in.
Definition LeafOptics.cpp:401
helios::Context
Stores the state associated with simulation.
Definition Context.h:1882
helios::Context::loadXML
std::vector< uint > loadXML(const char *filename, bool quiet=false)
Load inputs specified in an XML file.
Definition Context_fileIO.cpp:1217
-
helios::Context::doesGlobalDataExist
bool doesGlobalDataExist(const char *label) const
Check if global data 'label' exists.
Definition Context_data.cpp:4447
+
helios::Context::doesGlobalDataExist
bool doesGlobalDataExist(const char *label) const
Check if global data 'label' exists.
Definition Context_data.cpp:4458
helios::Context::getGlobalData
void getGlobalData(const char *label, int &data) const
Get global data value (scalar integer)
Definition Context_data.cpp:4053
helios::Context::setGlobalData
void setGlobalData(const char *label, const int &data)
Add global data value (int)
Definition Context_data.cpp:3769
helios::Context::setPrimitiveData
void setPrimitiveData(const uint &UUID, const char *label, const int &data)
Add data value (int) associated with a primitive element.
Definition Context_data.cpp:655
helios::helios_runtime_error
void helios_runtime_error(const std::string &error_message)
Function to throw a runtime error.
Definition global.cpp:29
-
helios::make_vec2
vec2 make_vec2(float x, float y)
Make a vec2 from two floats.
Definition helios_vector_types.h:432
+
helios::make_vec2
vec2 make_vec2(float x, float y)
Make a vec2 from two floats.
Definition helios_vector_types.h:433
LeafOpticsProperties
LeafOptics model class.
Definition LeafOptics.h:21
diff --git a/doc/html/_leaf_optics_8h.html b/doc/html/_leaf_optics_8h.html index c6447ef53..3dc43a23b 100644 --- a/doc/html/_leaf_optics_8h.html +++ b/doc/html/_leaf_optics_8h.html @@ -38,7 +38,7 @@ diff --git a/doc/html/_leaf_optics_8h_source.html b/doc/html/_leaf_optics_8h_source.html index 1bb3f6aaf..6d61d4a93 100644 --- a/doc/html/_leaf_optics_8h_source.html +++ b/doc/html/_leaf_optics_8h_source.html @@ -38,7 +38,7 @@ diff --git a/doc/html/_li_d_a_r_8cpp.html b/doc/html/_li_d_a_r_8cpp.html index fd1b4922b..7d9fa358f 100644 --- a/doc/html/_li_d_a_r_8cpp.html +++ b/doc/html/_li_d_a_r_8cpp.html @@ -38,7 +38,7 @@ diff --git a/doc/html/_li_d_a_r_8cpp_source.html b/doc/html/_li_d_a_r_8cpp_source.html index 9893f2757..996a19a9f 100644 --- a/doc/html/_li_d_a_r_8cpp_source.html +++ b/doc/html/_li_d_a_r_8cpp_source.html @@ -38,7 +38,7 @@ @@ -2116,7 +2116,7 @@
1879 for( int s=0; s<Nscans; s++ ){
1880 vec3 origin = getScanOrigin(s);
1881 vec3 raydir = vertices.front()-origin;
-
1882 raydir.normalize();
+
1882 raydir.normalize();
1883
1884 if( area==area ){ //in rare cases you can get area=NaN
1885
@@ -2899,39 +2899,39 @@
Visualizer::addRectangleByCenter
void addRectangleByCenter(const helios::vec3 &center, const helios::vec2 &size, const helios::SphericalCoord &rotation, const helios::RGBcolor &color, CoordinateSystem coordFlag)
Add a rectangle by giving the coordinates of its center.
Definition Visualizer.cpp:993
Visualizer::getCurrentColormap
Colormap getCurrentColormap() const
Get the current colormap used in Colorbar/visualization.
Definition Visualizer.cpp:2687
helios::Context
Stores the state associated with simulation.
Definition Context.h:1882
-
helios::Context::translatePrimitive
void translatePrimitive(uint UUID, const vec3 &shift)
Translate a primitive using its UUID.
Definition Context.cpp:1401
-
helios::Context::getPrimitiveArea
float getPrimitiveArea(uint UUID) const
Method to return the surface area of a Primitive.
Definition Context.cpp:6930
+
helios::Context::translatePrimitive
void translatePrimitive(uint UUID, const vec3 &shift)
Translate a primitive using its UUID.
Definition Context.cpp:1396
+
helios::Context::getPrimitiveArea
float getPrimitiveArea(uint UUID) const
Method to return the surface area of a Primitive.
Definition Context.cpp:6997
helios::Context::getPrimitiveData
void getPrimitiveData(uint UUID, const char *label, int &data) const
Get data associated with a primitive element.
Definition Context_data.cpp:1001
-
helios::Context::deletePrimitive
void deletePrimitive(uint UUID)
Delete a single primitive from the context.
Definition Context.cpp:1531
-
helios::Context::randu
float randu()
Draw a random number from a uniform distribution between 0 and 1.
Definition Context.cpp:1173
-
helios::Context::rotatePrimitive
void rotatePrimitive(uint UUID, float rot, const char *axis)
Rotate a primitive about the x, y, or z axis using its UUID.
Definition Context.cpp:1415
+
helios::Context::deletePrimitive
void deletePrimitive(uint UUID)
Delete a single primitive from the context.
Definition Context.cpp:1526
+
helios::Context::randu
float randu()
Draw a random number from a uniform distribution between 0 and 1.
Definition Context.cpp:1168
+
helios::Context::rotatePrimitive
void rotatePrimitive(uint UUID, float rot, const char *axis)
Rotate a primitive about the x, y, or z axis using its UUID.
Definition Context.cpp:1410
helios::Context::doesPrimitiveDataExist
bool doesPrimitiveDataExist(uint UUID, const char *label) const
Check if primitive data 'label' exists.
Definition Context_data.cpp:1169
-
helios::Context::copyPrimitive
uint copyPrimitive(uint UUID)
Make a copy of a primitive from the context.
Definition Context.cpp:1573
-
helios::Context::getAllUUIDs
std::vector< uint > getAllUUIDs() const
Get all primitive UUIDs currently in the Context.
Definition Context.cpp:1758
-
helios::Context::scalePrimitive
void scalePrimitive(uint UUID, const helios::vec3 &S)
Scale a primitive using its UUID relative to the origin (0,0,0)
Definition Context.cpp:1486
-
helios::Context::getPrimitiveNormal
helios::vec3 getPrimitiveNormal(uint UUID) const
Method to return the normal vector of a Primitive.
Definition Context.cpp:6981
+
helios::Context::copyPrimitive
uint copyPrimitive(uint UUID)
Make a copy of a primitive from the context.
Definition Context.cpp:1568
+
helios::Context::getAllUUIDs
std::vector< uint > getAllUUIDs() const
Get all primitive UUIDs currently in the Context.
Definition Context.cpp:1753
+
helios::Context::scalePrimitive
void scalePrimitive(uint UUID, const helios::vec3 &S)
Scale a primitive using its UUID relative to the origin (0,0,0)
Definition Context.cpp:1481
+
helios::Context::getPrimitiveNormal
helios::vec3 getPrimitiveNormal(uint UUID) const
Method to return the normal vector of a Primitive.
Definition Context.cpp:7048
helios::Context::setPrimitiveData
void setPrimitiveData(const uint &UUID, const char *label, const int &data)
Add data value (int) associated with a primitive element.
Definition Context_data.cpp:655
-
helios::Context::getPrimitiveVertices
std::vector< helios::vec3 > getPrimitiveVertices(uint UUID) const
Method to return the (x,y,z) coordinates of the vertices of a Primitive.
Definition Context.cpp:6999
+
helios::Context::getPrimitiveVertices
std::vector< helios::vec3 > getPrimitiveVertices(uint UUID) const
Method to return the (x,y,z) coordinates of the vertices of a Primitive.
Definition Context.cpp:7066
helios::rotatePointAboutLine
vec3 rotatePointAboutLine(const vec3 &point, const vec3 &line_base, const vec3 &line_direction, float theta)
Rotate a 3D vector about an arbitrary line.
Definition global.cpp:140
helios::helios_runtime_error
void helios_runtime_error(const std::string &error_message)
Function to throw a runtime error.
Definition global.cpp:29
helios::readPNGAlpha
std::vector< std::vector< bool > > readPNGAlpha(const std::string &filename)
Function to read the alpha channel from a PNG image.
Definition global.cpp:1406
-
helios::Context::addTile
std::vector< uint > addTile(const vec3 &center, const vec2 &size, const SphericalCoord &rotation, const int2 &subdiv)
Add a patch that is subdivided into a regular grid of sub-patches (tiled)
Definition Context.cpp:5686
+
helios::Context::addTile
std::vector< uint > addTile(const vec3 &center, const vec2 &size, const SphericalCoord &rotation, const int2 &subdiv)
Add a patch that is subdivided into a regular grid of sub-patches (tiled)
Definition Context.cpp:5753
helios::randu
float randu()
Random number from a uniform distribution between 0 and 1.
Definition global.cpp:223
helios::rotatePoint
vec3 rotatePoint(const vec3 &position, const SphericalCoord &rotation)
Function to rotate a 3D vector given spherical angles elevation and azimuth.
Definition global.cpp:79
helios::cart2sphere
SphericalCoord cart2sphere(const vec3 &Cartesian)
Convert Cartesian coordinates to spherical coordinates.
Definition global.cpp:610
helios::min
float min(const std::vector< float > &vect)
Minimum value of a vector of floats.
Definition global.cpp:1018
helios::max
float max(const std::vector< float > &vect)
Maximum value of a vector of floats.
Definition global.cpp:1064
-
helios::Context::addTriangle
uint addTriangle(const helios::vec3 &vertex0, const helios::vec3 &vertex1, const helios::vec3 &vertex2)
Add new Triangle geometric primitive.
Definition Context.cpp:1323
-
helios::Context::getPrimitiveCount
uint getPrimitiveCount() const
Get the total number of Primitives in the Context.
Definition Context.cpp:1754
-
helios::Context::addPatch
uint addPatch()
Add new default Patch geometric primitive, which is centered at the origin (0,0,0),...
Definition Context.cpp:1207
+
helios::Context::addTriangle
uint addTriangle(const helios::vec3 &vertex0, const helios::vec3 &vertex1, const helios::vec3 &vertex2)
Add new Triangle geometric primitive.
Definition Context.cpp:1318
+
helios::Context::getPrimitiveCount
uint getPrimitiveCount() const
Get the total number of Primitives in the Context.
Definition Context.cpp:1749
+
helios::Context::addPatch
uint addPatch()
Add new default Patch geometric primitive, which is centered at the origin (0,0,0),...
Definition Context.cpp:1202
helios::make_int2
int2 make_int2(int x, int y)
Make an int2 vector from two ints.
Definition helios_vector_types.h:99
-
helios::make_vec2
vec2 make_vec2(float x, float y)
Make a vec2 from two floats.
Definition helios_vector_types.h:432
-
helios::make_RGBAcolor
RGBAcolor make_RGBAcolor(float r, float g, float b, float a)
Make an RGBAcolor vector.
Definition helios_vector_types.h:1130
-
helios::make_RGBcolor
RGBcolor make_RGBcolor(float r, float g, float b)
Make an RGBcolor vector.
Definition helios_vector_types.h:951
+
helios::make_vec2
vec2 make_vec2(float x, float y)
Make a vec2 from two floats.
Definition helios_vector_types.h:433
+
helios::make_RGBAcolor
RGBAcolor make_RGBAcolor(float r, float g, float b, float a)
Make an RGBAcolor vector.
Definition helios_vector_types.h:1133
+
helios::make_RGBcolor
RGBcolor make_RGBcolor(float r, float g, float b)
Make an RGBcolor vector.
Definition helios_vector_types.h:954
helios::make_int3
int3 make_int3(int X, int Y, int Z)
Make an int3 vector from three ints.
Definition helios_vector_types.h:198
-
helios::make_vec3
vec3 make_vec3(float x, float y, float z)
Make a vec3 from three floats.
Definition helios_vector_types.h:587
-
helios::cross
vec3 cross(const vec3 &a, const vec3 &b)
Cross product of two vec3 vectors.
Definition helios_vector_types.h:597
-
helios::make_SphericalCoord
SphericalCoord make_SphericalCoord(float elevation_radians, float azimuth_radians)
Make a SphericalCoord by specifying elevation and azimuth.
Definition helios_vector_types.h:1536
+
helios::make_vec3
vec3 make_vec3(float x, float y, float z)
Make a vec3 from three floats.
Definition helios_vector_types.h:589
+
helios::cross
vec3 cross(const vec3 &a, const vec3 &b)
Cross product of two vec3 vectors.
Definition helios_vector_types.h:599
+
helios::make_SphericalCoord
SphericalCoord make_SphericalCoord(float elevation_radians, float azimuth_radians)
Make a SphericalCoord by specifying elevation and azimuth.
Definition helios_vector_types.h:1539
Colormap
RGB color map.
Definition Visualizer.h:159
@@ -2952,14 +2952,14 @@
ScanMetadata::rc2direction
helios::SphericalCoord rc2direction(uint row, uint column) const
Convert the (row,column) of hit point in a scan to a direction vector.
Definition LiDAR.cpp:57
-
helios::RGBAcolor
R-G-B-A color vector.
Definition helios_vector_types.h:1021
-
helios::RGBcolor
R-G-B color vector.
Definition helios_vector_types.h:841
-
helios::RGBcolor::b
float b
Blue color component.
Definition helios_vector_types.h:852
-
helios::RGBcolor::r
float r
Red color component.
Definition helios_vector_types.h:846
-
helios::RGBcolor::g
float g
Green color component.
Definition helios_vector_types.h:849
-
helios::SphericalCoord
Vector of spherical coordinates (elevation,azimuth)
Definition helios_vector_types.h:1468
-
helios::SphericalCoord::zenith
const float & zenith
Zenithal angle (radians)
Definition helios_vector_types.h:1487
-
helios::SphericalCoord::azimuth
float azimuth
Azimuthal angle (radians)
Definition helios_vector_types.h:1489
+
helios::RGBAcolor
R-G-B-A color vector.
Definition helios_vector_types.h:1024
+
helios::RGBcolor
R-G-B color vector.
Definition helios_vector_types.h:844
+
helios::RGBcolor::b
float b
Blue color component.
Definition helios_vector_types.h:855
+
helios::RGBcolor::r
float r
Red color component.
Definition helios_vector_types.h:849
+
helios::RGBcolor::g
float g
Green color component.
Definition helios_vector_types.h:852
+
helios::SphericalCoord
Vector of spherical coordinates (elevation,azimuth)
Definition helios_vector_types.h:1471
+
helios::SphericalCoord::zenith
const float & zenith
Zenithal angle (radians)
Definition helios_vector_types.h:1490
+
helios::SphericalCoord::azimuth
float azimuth
Azimuthal angle (radians)
Definition helios_vector_types.h:1492
helios::int2
Vector of two elements of type 'int'.
Definition helios_vector_types.h:44
helios::int2::y
int y
Second element in vector.
Definition helios_vector_types.h:50
helios::int2::x
int x
First element in vector.
Definition helios_vector_types.h:48
@@ -2969,12 +2969,12 @@
helios::int3::y
int y
Second element in vector.
Definition helios_vector_types.h:152
helios::vec2
Vector of two elements of type 'float'.
Definition helios_vector_types.h:346
helios::vec2::y
float y
Second element in vector.
Definition helios_vector_types.h:352
-
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:502
-
helios::vec3::x
float x
First element in vector.
Definition helios_vector_types.h:506
-
helios::vec3::z
float z
Third element in vector.
Definition helios_vector_types.h:510
-
helios::vec3::normalize
void normalize()
Normalize vector components such that the magnitude is unity.
Definition helios_vector_types.h:513
-
helios::vec3::y
float y
Second element in vector.
Definition helios_vector_types.h:508
-
helios::vec3::magnitude
float magnitude() const
Compute the vector magnitude.
Definition helios_vector_types.h:524
+
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:503
+
helios::vec3::normalize
vec3 normalize()
Normalize vector components such that the magnitude is unity.
Definition helios_vector_types.h:514
+
helios::vec3::x
float x
First element in vector.
Definition helios_vector_types.h:507
+
helios::vec3::z
float z
Third element in vector.
Definition helios_vector_types.h:511
+
helios::vec3::y
float y
Second element in vector.
Definition helios_vector_types.h:509
+
helios::vec3::magnitude
float magnitude() const
Compute the vector magnitude.
Definition helios_vector_types.h:526
diff --git a/doc/html/_li_d_a_r_8cu.html b/doc/html/_li_d_a_r_8cu.html index 70abc3b48..2e4703fd4 100644 --- a/doc/html/_li_d_a_r_8cu.html +++ b/doc/html/_li_d_a_r_8cu.html @@ -38,7 +38,7 @@
diff --git a/doc/html/_li_d_a_r_8cu_source.html b/doc/html/_li_d_a_r_8cu_source.html index 6be5d4e13..0cd23c1b4 100644 --- a/doc/html/_li_d_a_r_8cu_source.html +++ b/doc/html/_li_d_a_r_8cu_source.html @@ -38,7 +38,7 @@ @@ -1258,7 +1258,7 @@
1163 for( size_t r=0; r< getHitCount(); r++ ){
1164 if( getHitGridCell(r)>=0 ){
1165 helios::vec3 direction = getHitXYZ(r)-getScanOrigin(getHitScanID(r));
-
1166 direction.normalize();
+
1166 direction.normalize();
1167 hit_inside_agg.at(getHitGridCell(r)) += sin(acos_safe(direction.z));
1168 }
1169 }
@@ -1299,10 +1299,10 @@
1204 float area = sqrt( S*(S-L0)*(S-L1)*(S-L2) );
1205
1206 helios::vec3 normal = cross( v0, v2 );
-
1207 normal.normalize();
+
1207 normal.normalize();
1208
1209 helios::vec3 raydir = t0-getScanOrigin( tri.scanID );
-
1210 raydir.normalize();
+
1210 raydir.normalize();
1211
1212 float theta = fabs(acos_safe(raydir.z));
1213
@@ -1594,7 +1594,7 @@
1497 for( size_t r=0; r< getHitCount(); r++ ){
1498 if( getHitGridCell(r)>=0 ){
1499 helios::vec3 direction = getHitXYZ(r)-getScanOrigin(getHitScanID(r));
-
1500 direction.normalize();
+
1500 direction.normalize();
1501 hit_inside_agg.at(getHitGridCell(r)) += sin(acos_safe(direction.z));
1502 }
1503 }
@@ -1637,10 +1637,10 @@
1540 float area = sqrt( S*(S-L0)*(S-L1)*(S-L2) );
1541
1542 helios::vec3 normal = cross( v0, v2 );
-
1543 normal.normalize();
+
1543 normal.normalize();
1544
1545 helios::vec3 raydir = t0-getScanOrigin( tri.scanID );
-
1546 raydir.normalize();
+
1546 raydir.normalize();
1547
1548 float theta = fabs(acos_safe(raydir.z));
1549
@@ -2027,7 +2027,7 @@
1932 uint i = beam_array.at(k).at(j);
1933
1934 helios::vec3 direction = getHitXYZ(this_scan_index[i])-getScanOrigin(getHitScanID(this_scan_index[i]));
-
1935 direction.normalize();
+
1935 direction.normalize();
1936 sin_theta = sin(acos_safe(direction.z));
1937
1938 last_drr = dr[i];
@@ -2273,10 +2273,10 @@
2180 float area = sqrt( S*(S-L0)*(S-L1)*(S-L2) );
2181
2182 helios::vec3 normal = cross( v0, v2 );
-
2183 normal.normalize();
+
2183 normal.normalize();
2184
2185 helios::vec3 raydir = t0-getScanOrigin( tri.scanID );
-
2186 raydir.normalize();
+
2186 raydir.normalize();
2187
2188 float theta = fabs(acos_safe(raydir.z));
2189
@@ -4343,7 +4343,7 @@
4244 uint i = beam_array.at(k).at(j);
4245
4246 helios::vec3 direction = getHitXYZ(this_scan_index[i])-getScanOrigin(getHitScanID(this_scan_index[i]));
-
4247 direction.normalize();
+
4247 direction.normalize();
4248 sin_theta = sin(acos_safe(direction.z));
4249
4250 last_drr = dr[i];
@@ -4467,7 +4467,7 @@
4371 for( size_t r=0; r< getHitCount(); r++ ){
4372 if( getHitGridCell(r)>=0 ){
4373 helios::vec3 direction = getHitXYZ(r)-getScanOrigin(getHitScanID(r));
-
4374 direction.normalize();
+
4374 direction.normalize();
4375 hit_inside_agg.at(getHitGridCell(r)) += sin(acos_safe(direction.z));
4376 }
4377 }
@@ -4508,10 +4508,10 @@
4412 float area = sqrt( S*(S-L0)*(S-L1)*(S-L2) );
4413
4414 helios::vec3 normal = cross( v0, v2 );
-
4415 normal.normalize();
+
4415 normal.normalize();
4416
4417 helios::vec3 raydir = t0-getScanOrigin( tri.scanID );
-
4418 raydir.normalize();
+
4418 raydir.normalize();
4419
4420 float theta = fabs(acos_safe(raydir.z));
4421
@@ -4792,7 +4792,7 @@
4698 uint i = beam_array.at(k).at(j);
4699
4700 helios::vec3 direction = getHitXYZ(this_scan_index[i])-getScanOrigin(getHitScanID(this_scan_index[i]));
-
4701 direction.normalize();
+
4701 direction.normalize();
4702 sin_theta = sin(acos_safe(direction.z));
4703
4704 last_drr = dr[i];
@@ -4916,7 +4916,7 @@
4825 for( size_t r=0; r< getHitCount(); r++ ){
4826 if( getHitGridCell(r)>=0 ){
4827 helios::vec3 direction = getHitXYZ(r)-getScanOrigin(getHitScanID(r));
-
4828 direction.normalize();
+
4828 direction.normalize();
4829 hit_inside_agg.at(getHitGridCell(r)) += sin(acos_safe(direction.z));
4830 }
4831 }
@@ -4957,10 +4957,10 @@
4866 float area = sqrt( S*(S-L0)*(S-L1)*(S-L2) );
4867
4868 helios::vec3 normal = cross( v0, v2 );
-
4869 normal.normalize();
+
4869 normal.normalize();
4870
4871 helios::vec3 raydir = t0-getScanOrigin( tri.scanID );
-
4872 raydir.normalize();
+
4872 raydir.normalize();
4873
4874 float theta = fabs(acos_safe(raydir.z));
4875
@@ -5186,52 +5186,52 @@
LiDARcloud::getCellGlobalAnchor
helios::vec3 getCellGlobalAnchor(uint index) const
Get the (x,y,z) coordinate of a grid global anchor by its index.
Definition LiDAR.cpp:1819
LiDARcloud::calculateLeafAreaGPU
void calculateLeafAreaGPU()
Calculate the leaf area for each grid volume.
Definition LiDAR.cu:897
helios::Context
Stores the state associated with simulation.
Definition Context.h:1882
-
helios::Context::getPrimitiveColor
helios::RGBcolor getPrimitiveColor(uint UUID) const
Method to return the diffuse color of a Primitive.
Definition Context.cpp:7004
-
helios::Context::getPrimitiveArea
float getPrimitiveArea(uint UUID) const
Method to return the surface area of a Primitive.
Definition Context.cpp:6930
+
helios::Context::getPrimitiveColor
helios::RGBcolor getPrimitiveColor(uint UUID) const
Method to return the diffuse color of a Primitive.
Definition Context.cpp:7071
+
helios::Context::getPrimitiveArea
float getPrimitiveArea(uint UUID) const
Method to return the surface area of a Primitive.
Definition Context.cpp:6997
helios::Context::getPrimitiveData
void getPrimitiveData(uint UUID, const char *label, int &data) const
Get data associated with a primitive element.
Definition Context_data.cpp:1001
-
helios::Context::getPrimitiveTextureFile
std::string getPrimitiveTextureFile(uint UUID) const
Get the path to texture map file for primitive. If primitive does not have a texture map,...
Definition Context.cpp:7036
-
helios::Context::getPrimitiveTextureUV
std::vector< vec2 > getPrimitiveTextureUV(uint UUID) const
Get u-v texture coordinates at primitive vertices.
Definition Context.cpp:7052
-
helios::Context::primitiveTextureHasTransparencyChannel
bool primitiveTextureHasTransparencyChannel(uint UUID) const
Check if primitive texture map has a transparency channel.
Definition Context.cpp:7056
-
helios::Context::getPrimitiveType
PrimitiveType getPrimitiveType(uint UUID) const
Method to get the Primitive type.
Definition Context.cpp:6861
+
helios::Context::getPrimitiveTextureFile
std::string getPrimitiveTextureFile(uint UUID) const
Get the path to texture map file for primitive. If primitive does not have a texture map,...
Definition Context.cpp:7103
+
helios::Context::getPrimitiveTextureUV
std::vector< vec2 > getPrimitiveTextureUV(uint UUID) const
Get u-v texture coordinates at primitive vertices.
Definition Context.cpp:7119
+
helios::Context::primitiveTextureHasTransparencyChannel
bool primitiveTextureHasTransparencyChannel(uint UUID) const
Check if primitive texture map has a transparency channel.
Definition Context.cpp:7123
+
helios::Context::getPrimitiveType
PrimitiveType getPrimitiveType(uint UUID) const
Method to get the Primitive type.
Definition Context.cpp:6928
helios::Context::doesPrimitiveDataExist
bool doesPrimitiveDataExist(uint UUID, const char *label) const
Check if primitive data 'label' exists.
Definition Context_data.cpp:1169
-
helios::Context::getPrimitiveTextureSize
helios::int2 getPrimitiveTextureSize(uint UUID) const
Get the size (number of pixels) of primitive texture map image.
Definition Context.cpp:7044
-
helios::Context::getDomainBoundingBox
void getDomainBoundingBox(helios::vec2 &xbounds, helios::vec2 &ybounds, helios::vec2 &zbounds) const
Get a box that bounds all primitives in the domain.
Definition Context.cpp:2031
-
helios::Context::getAllUUIDs
std::vector< uint > getAllUUIDs() const
Get all primitive UUIDs currently in the Context.
Definition Context.cpp:1758
-
helios::Context::getPrimitiveTextureTransparencyData
const std::vector< std::vector< bool > > * getPrimitiveTextureTransparencyData(uint UUID) const
Get the transparency channel pixel data from primitive texture map. If transparency channel does not ...
Definition Context.cpp:7064
+
helios::Context::getPrimitiveTextureSize
helios::int2 getPrimitiveTextureSize(uint UUID) const
Get the size (number of pixels) of primitive texture map image.
Definition Context.cpp:7111
+
helios::Context::getDomainBoundingBox
void getDomainBoundingBox(helios::vec2 &xbounds, helios::vec2 &ybounds, helios::vec2 &zbounds) const
Get a box that bounds all primitives in the domain.
Definition Context.cpp:2026
+
helios::Context::getAllUUIDs
std::vector< uint > getAllUUIDs() const
Get all primitive UUIDs currently in the Context.
Definition Context.cpp:1753
+
helios::Context::getPrimitiveTextureTransparencyData
const std::vector< std::vector< bool > > * getPrimitiveTextureTransparencyData(uint UUID) const
Get the transparency channel pixel data from primitive texture map. If transparency channel does not ...
Definition Context.cpp:7131
helios::Context::getPrimitiveDataType
HeliosDataType getPrimitiveDataType(uint UUID, const char *label) const
Get the Helios data type of primitive data.
Definition Context_data.cpp:1155
helios::Context::setPrimitiveData
void setPrimitiveData(const uint &UUID, const char *label, const int &data)
Add data value (int) associated with a primitive element.
Definition Context_data.cpp:655
-
helios::Context::doesPrimitiveExist
bool doesPrimitiveExist(uint UUID) const
Check if primitive exists for a given UUID.
Definition Context.cpp:1654
-
helios::Context::getPrimitiveVertices
std::vector< helios::vec3 > getPrimitiveVertices(uint UUID) const
Method to return the (x,y,z) coordinates of the vertices of a Primitive.
Definition Context.cpp:6999
+
helios::Context::doesPrimitiveExist
bool doesPrimitiveExist(uint UUID) const
Check if primitive exists for a given UUID.
Definition Context.cpp:1649
+
helios::Context::getPrimitiveVertices
std::vector< helios::vec3 > getPrimitiveVertices(uint UUID) const
Method to return the (x,y,z) coordinates of the vertices of a Primitive.
Definition Context.cpp:7066
helios::cart2sphere
SphericalCoord cart2sphere(const vec3 &Cartesian)
Convert Cartesian coordinates to spherical coordinates.
Definition global.cpp:610
helios::atan2_2pi
float atan2_2pi(float y, float x)
Four quadrant arc tangent between 0 and 2*pi.
Definition global.cpp:584
helios::sphere2cart
vec3 sphere2cart(const SphericalCoord &Spherical)
Convert Spherical coordinates to Cartesian coordinates.
Definition global.cpp:617
helios::acos_safe
float acos_safe(float x)
arccosine function to handle cases when round-off errors cause an argument <-1 or >1,...
Definition global.cpp:241
helios::mean
float mean(const std::vector< float > &vect)
Mean value of a vector of floats.
Definition global.cpp:1002
helios::make_int2
int2 make_int2(int x, int y)
Make an int2 vector from two ints.
Definition helios_vector_types.h:99
-
helios::make_vec2
vec2 make_vec2(float x, float y)
Make a vec2 from two floats.
Definition helios_vector_types.h:432
-
helios::make_RGBcolor
RGBcolor make_RGBcolor(float r, float g, float b)
Make an RGBcolor vector.
Definition helios_vector_types.h:951
-
helios::cross
vec3 cross(const vec3 &a, const vec3 &b)
Cross product of two vec3 vectors.
Definition helios_vector_types.h:597
+
helios::make_vec2
vec2 make_vec2(float x, float y)
Make a vec2 from two floats.
Definition helios_vector_types.h:433
+
helios::make_RGBcolor
RGBcolor make_RGBcolor(float r, float g, float b)
Make an RGBcolor vector.
Definition helios_vector_types.h:954
+
helios::cross
vec3 cross(const vec3 &a, const vec3 &b)
Cross product of two vec3 vectors.
Definition helios_vector_types.h:599
-
helios::RGBcolor
R-G-B color vector.
Definition helios_vector_types.h:841
-
helios::RGBcolor::b
float b
Blue color component.
Definition helios_vector_types.h:852
-
helios::RGBcolor::r
float r
Red color component.
Definition helios_vector_types.h:846
-
helios::RGBcolor::g
float g
Green color component.
Definition helios_vector_types.h:849
-
helios::SphericalCoord
Vector of spherical coordinates (elevation,azimuth)
Definition helios_vector_types.h:1468
-
helios::SphericalCoord::zenith
const float & zenith
Zenithal angle (radians)
Definition helios_vector_types.h:1487
-
helios::SphericalCoord::azimuth
float azimuth
Azimuthal angle (radians)
Definition helios_vector_types.h:1489
+
helios::RGBcolor
R-G-B color vector.
Definition helios_vector_types.h:844
+
helios::RGBcolor::b
float b
Blue color component.
Definition helios_vector_types.h:855
+
helios::RGBcolor::r
float r
Red color component.
Definition helios_vector_types.h:849
+
helios::RGBcolor::g
float g
Green color component.
Definition helios_vector_types.h:852
+
helios::SphericalCoord
Vector of spherical coordinates (elevation,azimuth)
Definition helios_vector_types.h:1471
+
helios::SphericalCoord::zenith
const float & zenith
Zenithal angle (radians)
Definition helios_vector_types.h:1490
+
helios::SphericalCoord::azimuth
float azimuth
Azimuthal angle (radians)
Definition helios_vector_types.h:1492
helios::int2
Vector of two elements of type 'int'.
Definition helios_vector_types.h:44
helios::int2::y
int y
Second element in vector.
Definition helios_vector_types.h:50
helios::int2::x
int x
First element in vector.
Definition helios_vector_types.h:48
helios::vec2
Vector of two elements of type 'float'.
Definition helios_vector_types.h:346
helios::vec2::x
float x
First element in vector.
Definition helios_vector_types.h:350
helios::vec2::y
float y
Second element in vector.
Definition helios_vector_types.h:352
-
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:502
-
helios::vec3::x
float x
First element in vector.
Definition helios_vector_types.h:506
-
helios::vec3::z
float z
Third element in vector.
Definition helios_vector_types.h:510
-
helios::vec3::normalize
void normalize()
Normalize vector components such that the magnitude is unity.
Definition helios_vector_types.h:513
-
helios::vec3::y
float y
Second element in vector.
Definition helios_vector_types.h:508
-
helios::vec3::magnitude
float magnitude() const
Compute the vector magnitude.
Definition helios_vector_types.h:524
+
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:503
+
helios::vec3::normalize
vec3 normalize()
Normalize vector components such that the magnitude is unity.
Definition helios_vector_types.h:514
+
helios::vec3::x
float x
First element in vector.
Definition helios_vector_types.h:507
+
helios::vec3::z
float z
Third element in vector.
Definition helios_vector_types.h:511
+
helios::vec3::y
float y
Second element in vector.
Definition helios_vector_types.h:509
+
helios::vec3::magnitude
float magnitude() const
Compute the vector magnitude.
Definition helios_vector_types.h:526
diff --git a/doc/html/_li_d_a_r_8h.html b/doc/html/_li_d_a_r_8h.html index e19feb028..7c77b998f 100644 --- a/doc/html/_li_d_a_r_8h.html +++ b/doc/html/_li_d_a_r_8h.html @@ -38,7 +38,7 @@
diff --git a/doc/html/_li_d_a_r_8h_source.html b/doc/html/_li_d_a_r_8h_source.html index 99dc64141..b52ae6f7b 100644 --- a/doc/html/_li_d_a_r_8h_source.html +++ b/doc/html/_li_d_a_r_8h_source.html @@ -38,7 +38,7 @@ @@ -857,13 +857,13 @@
ScanMetadata::beamDivergence
float beamDivergence
Divergence angle of the laser beam in radians.
Definition LiDAR.h:247
ScanMetadata::rc2direction
helios::SphericalCoord rc2direction(uint row, uint column) const
Convert the (row,column) of hit point in a scan to a direction vector.
Definition LiDAR.cpp:57
-
helios::RGBcolor
R-G-B color vector.
Definition helios_vector_types.h:841
-
helios::SphericalCoord
Vector of spherical coordinates (elevation,azimuth)
Definition helios_vector_types.h:1468
+
helios::RGBcolor
R-G-B color vector.
Definition helios_vector_types.h:844
+
helios::SphericalCoord
Vector of spherical coordinates (elevation,azimuth)
Definition helios_vector_types.h:1471
helios::int2
Vector of two elements of type 'int'.
Definition helios_vector_types.h:44
helios::int3
Vector of three elements of type 'int'.
Definition helios_vector_types.h:146
helios::vec2
Vector of two elements of type 'float'.
Definition helios_vector_types.h:346
-
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:502
-
helios::vec3::magnitude
float magnitude() const
Compute the vector magnitude.
Definition helios_vector_types.h:524
+
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:503
+
helios::vec3::magnitude
float magnitude() const
Compute the vector magnitude.
Definition helios_vector_types.h:526
diff --git a/doc/html/_li_d_a_r_doc.html b/doc/html/_li_d_a_r_doc.html index 2cf60f7c3..d704d8c51 100644 --- a/doc/html/_li_d_a_r_doc.html +++ b/doc/html/_li_d_a_r_doc.html @@ -38,7 +38,7 @@
@@ -535,7 +535,7 @@

}
LiDARcloud::exportPointCloud
void exportPointCloud(const char *filename)
Export to file all points in the point cloud to an ASCII text file following the column format specif...
Definition fileIO.cpp:728
LiDARcloud::syntheticScan
void syntheticScan(helios::Context *context)
Run a discrete return synthetic LiDAR scan based on scan parameters given in an XML file (returns onl...
Definition LiDAR.cu:3093
-
helios::Context::addPatch
uint addPatch()
Add new default Patch geometric primitive, which is centered at the origin (0,0,0),...
Definition Context.cpp:1207
+
helios::Context::addPatch
uint addPatch()
Add new default Patch geometric primitive, which is centered at the origin (0,0,0),...
Definition Context.cpp:1202

Synthetic waveform data

Generation of synthetic full-waveform data is similar to discrete-return, except that additional information is needed to define the scan and simulation. In the XML file, the user must specify the diameter of the laser beam at the scan origin using the <exitDiameter> </exitDiameter> tags, as well as the angle of beam divergence in radians using the <beamDivergence> </beamDivergence> tags. If the exit diameter value is not specified, the default value of 0 is used, which means that the model will revert to discrete-return data generation. If the beam divergence value is not specified, a default beam divergence of 0 will be assumed, which effectively just means that the beam will remain perfectly cylindrical with diameter of exitDiameter.

diff --git a/doc/html/_making_masks.html b/doc/html/_making_masks.html index 797827a75..6b95427ff 100644 --- a/doc/html/_making_masks.html +++ b/doc/html/_making_masks.html @@ -38,7 +38,7 @@ diff --git a/doc/html/_overview.html b/doc/html/_overview.html index 36b9014c1..b5e74c54c 100644 --- a/doc/html/_overview.html +++ b/doc/html/_overview.html @@ -38,7 +38,7 @@ diff --git a/doc/html/_p_c_g_p_u_timeout.html b/doc/html/_p_c_g_p_u_timeout.html index 83d4a294a..7013bbb0e 100644 --- a/doc/html/_p_c_g_p_u_timeout.html +++ b/doc/html/_p_c_g_p_u_timeout.html @@ -38,7 +38,7 @@ diff --git a/doc/html/_photosynthesis_doc.html b/doc/html/_photosynthesis_doc.html index bde4af4a6..f563e560a 100644 --- a/doc/html/_photosynthesis_doc.html +++ b/doc/html/_photosynthesis_doc.html @@ -38,7 +38,7 @@ diff --git a/doc/html/_photosynthesis_model_8cpp.html b/doc/html/_photosynthesis_model_8cpp.html index eb3289178..a564fd1f3 100644 --- a/doc/html/_photosynthesis_model_8cpp.html +++ b/doc/html/_photosynthesis_model_8cpp.html @@ -38,7 +38,7 @@ diff --git a/doc/html/_photosynthesis_model_8cpp_source.html b/doc/html/_photosynthesis_model_8cpp_source.html index b5edb40ee..4f4136ed1 100644 --- a/doc/html/_photosynthesis_model_8cpp_source.html +++ b/doc/html/_photosynthesis_model_8cpp_source.html @@ -38,7 +38,7 @@ @@ -944,14 +944,14 @@
helios::Context
Stores the state associated with simulation.
Definition Context.h:1882
helios::Context::getPrimitiveData
void getPrimitiveData(uint UUID, const char *label, int &data) const
Get data associated with a primitive element.
Definition Context_data.cpp:1001
helios::Context::doesPrimitiveDataExist
bool doesPrimitiveDataExist(uint UUID, const char *label) const
Check if primitive data 'label' exists.
Definition Context_data.cpp:1169
-
helios::Context::getAllUUIDs
std::vector< uint > getAllUUIDs() const
Get all primitive UUIDs currently in the Context.
Definition Context.cpp:1758
+
helios::Context::getAllUUIDs
std::vector< uint > getAllUUIDs() const
Get all primitive UUIDs currently in the Context.
Definition Context.cpp:1753
helios::Context::getPrimitiveDataType
HeliosDataType getPrimitiveDataType(uint UUID, const char *label) const
Get the Helios data type of primitive data.
Definition Context_data.cpp:1155
helios::Context::setPrimitiveData
void setPrimitiveData(const uint &UUID, const char *label, const int &data)
Add data value (int) associated with a primitive element.
Definition Context_data.cpp:655
-
helios::fzero
float fzero(float(*function)(float value, std::vector< float > &variables, const void *parameters), std::vector< float > &variables, const void *parameters, float init_guess, float err_tol=0.0001f, int max_iterations=100)
Use Newton-Raphson method to find the zero of a function.
Definition global.cpp:2893
+
helios::fzero
float fzero(float(*function)(float value, std::vector< float > &variables, const void *parameters), std::vector< float > &variables, const void *parameters, float init_guess, float err_tol=0.0001f, int max_iterations=100)
Use Newton-Raphson method to find the zero of a function.
Definition global.cpp:2895
helios::clamp
anytype clamp(anytype value, anytype min, anytype max)
Clamp value to be within some specified bounds.
Definition global.cpp:973
-
helios::Context::addPatch
uint addPatch()
Add new default Patch geometric primitive, which is centered at the origin (0,0,0),...
Definition Context.cpp:1207
-
helios::make_vec2
vec2 make_vec2(float x, float y)
Make a vec2 from two floats.
Definition helios_vector_types.h:432
-
helios::make_vec3
vec3 make_vec3(float x, float y, float z)
Make a vec3 from three floats.
Definition helios_vector_types.h:587
+
helios::Context::addPatch
uint addPatch()
Add new default Patch geometric primitive, which is centered at the origin (0,0,0),...
Definition Context.cpp:1202
+
helios::make_vec2
vec2 make_vec2(float x, float y)
Make a vec2 from two floats.
Definition helios_vector_types.h:433
+
helios::make_vec3
vec3 make_vec3(float x, float y, float z)
Make a vec3 from three floats.
Definition helios_vector_types.h:589
diff --git a/doc/html/_photosynthesis_model_8h.html b/doc/html/_photosynthesis_model_8h.html index f13974667..3a634450b 100644 --- a/doc/html/_photosynthesis_model_8h.html +++ b/doc/html/_photosynthesis_model_8h.html @@ -38,7 +38,7 @@ diff --git a/doc/html/_photosynthesis_model_8h_source.html b/doc/html/_photosynthesis_model_8h_source.html index bd80aacbd..6f4ae5f26 100644 --- a/doc/html/_photosynthesis_model_8h_source.html +++ b/doc/html/_photosynthesis_model_8h_source.html @@ -38,7 +38,7 @@ diff --git a/doc/html/_plant_architecture_8cpp.html b/doc/html/_plant_architecture_8cpp.html index 09cbbd85f..b5ccb6b60 100644 --- a/doc/html/_plant_architecture_8cpp.html +++ b/doc/html/_plant_architecture_8cpp.html @@ -38,7 +38,7 @@ @@ -228,7 +228,7 @@

-

Definition at line 3044 of file PlantArchitecture.cpp.

+

Definition at line 3064 of file PlantArchitecture.cpp.

diff --git a/doc/html/_plant_architecture_8cpp_source.html b/doc/html/_plant_architecture_8cpp_source.html index d0c14baf5..d396d96f9 100644 --- a/doc/html/_plant_architecture_8cpp_source.html +++ b/doc/html/_plant_architecture_8cpp_source.html @@ -38,7 +38,7 @@

@@ -241,3139 +241,3163 @@
142 peduncle.radial_subdivisions = 7;
143
144 //--- inflorescence ---//
-
145 inflorescence.flowers_per_rachis.initialize(1, generator);
+
145 inflorescence.flowers_per_peduncle.initialize(1, generator);
146 inflorescence.flower_offset.initialize(0, generator);
-
147 inflorescence.flower_arrangement_pattern = "alternate";
-
148 inflorescence.pitch.initialize(0,generator);
-
149 inflorescence.roll.initialize(0,generator);
-
150 inflorescence.flower_prototype_scale.initialize(0.0075,generator);
-
151 inflorescence.fruit_prototype_scale.initialize(0.0075,generator);
-
152 inflorescence.fruit_gravity_factor_fraction.initialize(0, generator);
-
153 inflorescence.unique_prototypes = 1;
-
154
-
155}
+
147 inflorescence.pitch.initialize(0,generator);
+
148 inflorescence.roll.initialize(0,generator);
+
149 inflorescence.flower_prototype_scale.initialize(0.0075,generator);
+
150 inflorescence.fruit_prototype_scale.initialize(0.0075,generator);
+
151 inflorescence.fruit_gravity_factor_fraction.initialize(0, generator);
+
152 inflorescence.unique_prototypes = 1;
+
153
+
154}
-
156
-
157ShootParameters::ShootParameters() : ShootParameters(nullptr) {}
-
158
-
-
159ShootParameters::ShootParameters( std::minstd_rand0 *generator ) {
-
160
-
161 // ---- Geometric Parameters ---- //
-
162
-
163 max_nodes.initialize( 10, generator );
-
164
-
165 internode_radius_initial.initialize(0.001,generator);
-
166 internode_radius_max.initialize(1e6, generator);
-
167
-
168 insertion_angle_tip.initialize(20, generator);
-
169 insertion_angle_decay_rate.initialize(0, generator);
-
170
-
171 internode_length_max.initialize(0.02, generator);
-
172 internode_length_min.initialize(0.002, generator);
-
173 internode_length_decay_rate.initialize(0, generator);
-
174
-
175 base_roll.initialize(0, generator);
-
176 base_yaw.initialize(0, generator);
-
177
-
178 gravitropic_curvature.initialize(0, generator );
-
179 tortuosity.initialize(0, generator );
-
180
-
181 // ---- Growth Parameters ---- //
-
182
-
183 phyllochron.initialize(1, generator);
-
184 leaf_flush_count = 1;
-
185
-
186 elongation_rate.initialize(0.2, generator);
-
187 girth_growth_rate.initialize(0, generator);
-
188
-
189 vegetative_bud_break_time.initialize(5, generator);
-
190 vegetative_bud_break_probability.initialize(0,generator);
-
191 max_terminal_floral_buds.initialize(0, generator);
-
192 flower_bud_break_probability.initialize(0,generator);
-
193 fruit_set_probability.initialize(0,generator);
-
194
-
195 flowers_require_dormancy = false;
-
196 growth_requires_dormancy = false;
-
197
-
198 determinate_shoot_growth = true;
-
199
-
200}
+
155
+
156ShootParameters::ShootParameters() : ShootParameters(nullptr) {}
+
157
+
+
158ShootParameters::ShootParameters( std::minstd_rand0 *generator ) {
+
159
+
160 // ---- Geometric Parameters ---- //
+
161
+
162 max_nodes.initialize( 10, generator );
+
163
+
164 internode_radius_initial.initialize(0.001,generator);
+
165 internode_radius_max.initialize(1e6, generator);
+
166
+
167 insertion_angle_tip.initialize(20, generator);
+
168 insertion_angle_decay_rate.initialize(0, generator);
+
169
+
170 internode_length_max.initialize(0.02, generator);
+
171 internode_length_min.initialize(0.002, generator);
+
172 internode_length_decay_rate.initialize(0, generator);
+
173
+
174 base_roll.initialize(0, generator);
+
175 base_yaw.initialize(0, generator);
+
176
+
177 gravitropic_curvature.initialize(0, generator );
+
178 tortuosity.initialize(0, generator );
+
179
+
180 // ---- Growth Parameters ---- //
+
181
+
182 phyllochron.initialize(1, generator);
+
183 leaf_flush_count = 1;
+
184
+
185 elongation_rate.initialize(0.2, generator);
+
186 girth_area_factor.initialize(0, generator);
+
187
+
188 vegetative_bud_break_time.initialize(5, generator);
+
189 vegetative_bud_break_probability.initialize(0,generator);
+
190 max_terminal_floral_buds.initialize(0, generator);
+
191 flower_bud_break_probability.initialize(0,generator);
+
192 fruit_set_probability.initialize(0,generator);
+
193
+
194 flowers_require_dormancy = false;
+
195 growth_requires_dormancy = false;
+
196
+
197 determinate_shoot_growth = true;
+
198
+
199}
-
201
-
202void ShootParameters::defineChildShootTypes( const std::vector<std::string> &a_child_shoot_type_labels, const std::vector<float> &a_child_shoot_type_probabilities ){
-
203
-
204 if( a_child_shoot_type_labels.size()!=a_child_shoot_type_probabilities.size() ){
-
205 helios_runtime_error("ERROR (ShootParameters::defineChildShootTypes): Child shoot type labels and probabilities must be the same size.");
-
206 }else if( a_child_shoot_type_labels.empty() ){
-
207 helios_runtime_error("ERROR (ShootParameters::defineChildShootTypes): Input argument vectors were empty.");
-
208 }else if( sum(a_child_shoot_type_probabilities)!=1.f ){
-
209 helios_runtime_error("ERROR (ShootParameters::defineChildShootTypes): Child shoot type probabilities must sum to 1.");
-
210 }
-
211
-
212 child_shoot_type_labels = a_child_shoot_type_labels;
-
213 child_shoot_type_probabilities = a_child_shoot_type_probabilities;
-
214
-
215}
-
216
-
-
217std::vector<uint> PlantArchitecture::buildPlantCanopyFromLibrary(const helios::vec3 &canopy_center_position, const helios::vec2 &plant_spacing_xy, const helios::int2 &plant_count_xy, float age ){
-
218
-
219 if( plant_count_xy.x<=0 || plant_count_xy.y<=0 ){
-
220 helios_runtime_error("ERROR (PlantArchitecture::buildPlantCanopyFromLibrary): Plant count must be greater than zero.");
-
221 }
-
222
-
223 vec2 canopy_extent(plant_spacing_xy.x*(plant_count_xy.x-1), plant_spacing_xy.y*(plant_count_xy.y-1));
-
224
-
225 std::vector<uint> plantIDs(plant_count_xy.x*plant_count_xy.y);
-
226 for( int j=0; j<plant_count_xy.y; j++ ){
-
227 for( int i=0; i<plant_count_xy.x; i++ ){
-
228 plantIDs.at(i+j*plant_count_xy.x) = buildPlantInstanceFromLibrary( canopy_center_position + make_vec3(-0.5f*canopy_extent.x+float(i)*plant_spacing_xy.x, -0.5f*canopy_extent.y+float(j)*plant_spacing_xy.y, 0), age );
-
229 }
-
230 }
-
231
-
232 return plantIDs;
-
233
-
234}
+
200
+
201void ShootParameters::defineChildShootTypes( const std::vector<std::string> &a_child_shoot_type_labels, const std::vector<float> &a_child_shoot_type_probabilities ){
+
202
+
203 if( a_child_shoot_type_labels.size()!=a_child_shoot_type_probabilities.size() ){
+
204 helios_runtime_error("ERROR (ShootParameters::defineChildShootTypes): Child shoot type labels and probabilities must be the same size.");
+
205 }else if( a_child_shoot_type_labels.empty() ){
+
206 helios_runtime_error("ERROR (ShootParameters::defineChildShootTypes): Input argument vectors were empty.");
+
207 }else if( sum(a_child_shoot_type_probabilities)!=1.f ){
+
208 helios_runtime_error("ERROR (ShootParameters::defineChildShootTypes): Child shoot type probabilities must sum to 1.");
+
209 }
+
210
+
211 child_shoot_type_labels = a_child_shoot_type_labels;
+
212 child_shoot_type_probabilities = a_child_shoot_type_probabilities;
+
213
+
214}
+
215
+
+
216std::vector<uint> PlantArchitecture::buildPlantCanopyFromLibrary(const helios::vec3 &canopy_center_position, const helios::vec2 &plant_spacing_xy, const helios::int2 &plant_count_xy, float age ){
+
217
+
218 if( plant_count_xy.x<=0 || plant_count_xy.y<=0 ){
+
219 helios_runtime_error("ERROR (PlantArchitecture::buildPlantCanopyFromLibrary): Plant count must be greater than zero.");
+
220 }
+
221
+
222 vec2 canopy_extent(plant_spacing_xy.x*(plant_count_xy.x-1), plant_spacing_xy.y*(plant_count_xy.y-1));
+
223
+
224 std::vector<uint> plantIDs(plant_count_xy.x*plant_count_xy.y);
+
225 for( int j=0; j<plant_count_xy.y; j++ ){
+
226 for( int i=0; i<plant_count_xy.x; i++ ){
+
227 plantIDs.at(i+j*plant_count_xy.x) = buildPlantInstanceFromLibrary( canopy_center_position + make_vec3(-0.5f*canopy_extent.x+float(i)*plant_spacing_xy.x, -0.5f*canopy_extent.y+float(j)*plant_spacing_xy.y, 0), age );
+
228 }
+
229 }
+
230
+
231 return plantIDs;
+
232
+
233}
-
235
-
-
236void PlantArchitecture::defineShootType( const std::string &shoot_type_label, const ShootParameters &shoot_params ) {
-
237 if( shoot_types.find(shoot_type_label)!=shoot_types.end() ){
-
238 //std::cerr <<"WARNING (PlantArchitecture::defineShootType): Shoot type label of " << shoot_type_label << " already exists." << std::endl;
-
239 shoot_types.at(shoot_type_label) = shoot_params;
-
240 }else {
-
241 shoot_types.emplace(shoot_type_label, shoot_params);
-
242 }
-
243}
+
234
+
+
235void PlantArchitecture::defineShootType( const std::string &shoot_type_label, const ShootParameters &shoot_params ) {
+
236 if( shoot_types.find(shoot_type_label)!=shoot_types.end() ){
+
237 //std::cerr <<"WARNING (PlantArchitecture::defineShootType): Shoot type label of " << shoot_type_label << " already exists." << std::endl;
+
238 shoot_types.at(shoot_type_label) = shoot_params;
+
239 }else {
+
240 shoot_types.emplace(shoot_type_label, shoot_params);
+
241 }
+
242}
-
244
-
245std::vector<helios::vec3> Phytomer::getInternodeNodePositions() const{
-
246 std::vector<vec3> nodes = parent_shoot_ptr->shoot_internode_vertices.at(shoot_index.x);
-
247 if( shoot_index.x>0 ){
-
248 int p_minus = shoot_index.x-1;
-
249 int s_minus = parent_shoot_ptr->shoot_internode_vertices.at(p_minus).size()-1;
-
250 nodes.insert( nodes.begin(), parent_shoot_ptr->shoot_internode_vertices.at(p_minus).at(s_minus) );
-
251 }
-
252 return nodes;
-
253}
-
254
-
255std::vector<float> Phytomer::getInternodeNodeRadii() const{
-
256 std::vector<float> node_radii = parent_shoot_ptr->shoot_internode_radii.at(shoot_index.x);
-
257 if( shoot_index.x>0 ){
-
258 int p_minus = shoot_index.x-1;
-
259 int s_minus = parent_shoot_ptr->shoot_internode_radii.at(p_minus).size()-1;
-
260 node_radii.insert(node_radii.begin(), parent_shoot_ptr->shoot_internode_radii.at(p_minus).at(s_minus) );
-
261 }
-
262 return node_radii;
-
263}
-
264
-
265helios::vec3 Phytomer::getInternodeAxisVector(float stem_fraction) const{
-
266 return getAxisVector(stem_fraction, getInternodeNodePositions());
-
267}
-
268
-
269helios::vec3 Phytomer::getPetioleAxisVector(float stem_fraction, uint petiole_index) const {
-
270 if( petiole_index>=petiole_vertices.size() ){
-
271 helios_runtime_error("ERROR (Phytomer::getPetioleAxisVector): Petiole index out of range.");
-
272 }
-
273 return getAxisVector( stem_fraction, petiole_vertices.at(petiole_index) );
-
274}
-
275
-
276helios::vec3 Phytomer::getAxisVector( float stem_fraction, const std::vector<helios::vec3> &axis_vertices ) {
-
277
-
278 assert( stem_fraction>=0 && stem_fraction<=1 );
-
279
-
280 float df = 0.1f;
-
281 float frac_plus, frac_minus;
-
282 if( stem_fraction+df<=1 ) {
-
283 frac_minus = stem_fraction;
-
284 frac_plus = stem_fraction + df;
-
285 }else{
-
286 frac_minus = stem_fraction-df;
-
287 frac_plus = stem_fraction;
-
288 }
-
289
-
290 vec3 node_minus = interpolateTube( axis_vertices, frac_minus );
-
291 vec3 node_plus = interpolateTube( axis_vertices, frac_plus );
-
292
-
293 vec3 norm = node_plus-node_minus;
-
294 norm.normalize();
-
295
-
296 return norm;
-
297
-
298}
-
299
-
300float Phytomer::getInternodeRadius() const{
-
301 return parent_shoot_ptr->shoot_internode_radii.at(shoot_index.x).front();
-
302}
-
303
-
304float Phytomer::getInternodeLength() const{
-
305 std::vector<vec3> node_vertices = this->getInternodeNodePositions();
-
306 float length = 0;
-
307 for( int i=0; i<node_vertices.size()-1; i++ ){
-
308 length += (node_vertices.at(i+1)-node_vertices.at(i)).magnitude();
-
309 }
-
310 return length;
-
311}
-
312
-
313float Phytomer::getPetioleLength() const{
-
314
-
315 // \todo
-
316 return 0;
-
317}
-
318
-
319float Phytomer::getInternodeRadius( float stem_fraction ) const{
-
320 return interpolateTube(parent_shoot_ptr->shoot_internode_radii.at(shoot_index.x), stem_fraction );
-
321}
-
322
-
323void Phytomer::setVegetativeBudState( BudState state ){
-
324 for( auto& petiole : axillary_vegetative_buds ){
-
325 for( auto& bud : petiole ) {
-
326 bud.state = state;
-
327 }
-
328 }
-
329}
-
330
-
331void Phytomer::setVegetativeBudState(BudState state, uint petiole_index, uint bud_index) {
-
332 if(petiole_index >= axillary_vegetative_buds.size() ){
-
333 helios_runtime_error("ERROR (Phytomer::setVegetativeBudState): Petiole index out of range.");
-
334 }
-
335 if(bud_index >= axillary_vegetative_buds.at(petiole_index).size() ){
-
336 helios_runtime_error("ERROR (Phytomer::setVegetativeBudState): Bud index out of range.");
-
337 }
-
338 setVegetativeBudState(state, axillary_vegetative_buds.at(petiole_index).at(bud_index) );
-
339}
-
340
-
341void Phytomer::setVegetativeBudState( BudState state, VegetativeBud &vbud ){
-
342 vbud.state = state;
-
343}
-
344
-
345void Phytomer::setFloralBudState(BudState state ) {
-
346 for( auto &petiole :floral_buds ) {
-
347 for ( auto &fbud : petiole ) {
-
348 if( !fbud.isterminal ) {
-
349 setFloralBudState(state, fbud);
-
350 }
-
351 }
-
352 }
-
353}
-
354
-
355void Phytomer::setFloralBudState(BudState state, uint petiole_index, uint bud_index) {
-
356 if (petiole_index >= floral_buds.size()) {
-
357 helios_runtime_error("ERROR (Phytomer::setFloralBudState): Petiole index out of range.");
-
358 }
-
359 if (bud_index >= floral_buds.at(petiole_index).size()) {
-
360 helios_runtime_error("ERROR (Phytomer::setFloralBudState): Bud index out of range.");
-
361 }
-
362 setFloralBudState(state, floral_buds.at(petiole_index).at(bud_index));
-
363}
-
364
-
365void Phytomer::setFloralBudState(BudState state, FloralBud &fbud ) {
-
366
-
367 // If state is already at the desired state, do nothing
-
368 if (fbud.state == state) {
-
369 return;
-
370 } else if (state == BUD_DORMANT || state == BUD_ACTIVE ) {
-
371 fbud.state = state;
-
372 return;
-
373 }
-
374
-
375 // Calculate carbon cost
-
376 if( state == BUD_FLOWER_CLOSED || (fbud.state == BUD_ACTIVE && state == BUD_FLOWER_OPEN ) ){ //state went from active to closed flower or open flower
-
377 float flower_cost = calculateFlowerConstructionCosts(fbud);
-
378 plantarchitecture_ptr->plant_instances.at(this->plantID).shoot_tree.at(this->parent_shoot_ID)->carbohydrate_pool_molC -= flower_cost;
-
379 }else if( state == BUD_FRUITING ){ //adding a fruit
-
380 float fruit_cost = calculateFruitConstructionCosts(fbud);
-
381 plantarchitecture_ptr->plant_instances.at(this->plantID).shoot_tree.at(this->parent_shoot_ID)->carbohydrate_pool_molC -= fruit_cost;
-
382 }
-
383
-
384 // Delete geometry from previous reproductive state (if present)
-
385 context_ptr->deleteObject( fbud.inflorescence_objIDs );
-
386 fbud.inflorescence_objIDs.resize(0);
-
387
-
388 if( plantarchitecture_ptr->build_context_geometry_peduncle ) {
-
389 context_ptr->deleteObject(fbud.peduncle_objIDs);
-
390 fbud.peduncle_objIDs.resize(0);
-
391 }
-
392
-
393 fbud.state = state;
-
394
-
395 if(state != BUD_DEAD ) { //add new reproductive organs
-
396
-
397 updateInflorescence(fbud);
-
398 fbud.time_counter = 0;
-
399 if (fbud.state == BUD_FRUITING) {
-
400 setInflorescenceScaleFraction(fbud, 0.25);
-
401 }
-
402
-
403 }
+
243
+
244std::vector<helios::vec3> Phytomer::getInternodeNodePositions() const{
+
245 std::vector<vec3> nodes = parent_shoot_ptr->shoot_internode_vertices.at(shoot_index.x);
+
246 if( shoot_index.x>0 ){
+
247 int p_minus = shoot_index.x-1;
+
248 int s_minus = parent_shoot_ptr->shoot_internode_vertices.at(p_minus).size()-1;
+
249 nodes.insert( nodes.begin(), parent_shoot_ptr->shoot_internode_vertices.at(p_minus).at(s_minus) );
+
250 }
+
251 return nodes;
+
252}
+
253
+
254std::vector<float> Phytomer::getInternodeNodeRadii() const{
+
255 std::vector<float> node_radii = parent_shoot_ptr->shoot_internode_radii.at(shoot_index.x);
+
256 if( shoot_index.x>0 ){
+
257 int p_minus = shoot_index.x-1;
+
258 int s_minus = parent_shoot_ptr->shoot_internode_radii.at(p_minus).size()-1;
+
259 node_radii.insert(node_radii.begin(), parent_shoot_ptr->shoot_internode_radii.at(p_minus).at(s_minus) );
+
260 }
+
261 return node_radii;
+
262}
+
263
+
264helios::vec3 Phytomer::getInternodeAxisVector(float stem_fraction) const{
+
265 return getAxisVector(stem_fraction, getInternodeNodePositions());
+
266}
+
267
+
268helios::vec3 Phytomer::getPetioleAxisVector(float stem_fraction, uint petiole_index) const {
+
269 if( petiole_index>=petiole_vertices.size() ){
+
270 helios_runtime_error("ERROR (Phytomer::getPetioleAxisVector): Petiole index out of range.");
+
271 }
+
272 return getAxisVector( stem_fraction, petiole_vertices.at(petiole_index) );
+
273}
+
274
+
275helios::vec3 Phytomer::getAxisVector( float stem_fraction, const std::vector<helios::vec3> &axis_vertices ) {
+
276
+
277 assert( stem_fraction>=0 && stem_fraction<=1 );
+
278
+
279 float df = 0.1f;
+
280 float frac_plus, frac_minus;
+
281 if( stem_fraction+df<=1 ) {
+
282 frac_minus = stem_fraction;
+
283 frac_plus = stem_fraction + df;
+
284 }else{
+
285 frac_minus = stem_fraction-df;
+
286 frac_plus = stem_fraction;
+
287 }
+
288
+
289 vec3 node_minus = interpolateTube( axis_vertices, frac_minus );
+
290 vec3 node_plus = interpolateTube( axis_vertices, frac_plus );
+
291
+
292 vec3 norm = node_plus-node_minus;
+
293 norm.normalize();
+
294
+
295 return norm;
+
296
+
297}
+
298
+
299float Phytomer::getInternodeRadius() const{
+
300 return parent_shoot_ptr->shoot_internode_radii.at(shoot_index.x).front();
+
301}
+
302
+
303float Phytomer::getInternodeLength() const{
+
304 std::vector<vec3> node_vertices = this->getInternodeNodePositions();
+
305 float length = 0;
+
306 for( int i=0; i<node_vertices.size()-1; i++ ){
+
307 length += (node_vertices.at(i+1)-node_vertices.at(i)).magnitude();
+
308 }
+
309 return length;
+
310}
+
311
+
312float Phytomer::getPetioleLength() const{
+
313
+
314 // \todo
+
315 return 0;
+
316}
+
317
+
318float Phytomer::getInternodeRadius( float stem_fraction ) const{
+
319 return interpolateTube(parent_shoot_ptr->shoot_internode_radii.at(shoot_index.x), stem_fraction );
+
320}
+
321
+
322void Phytomer::setVegetativeBudState( BudState state ){
+
323 for( auto& petiole : axillary_vegetative_buds ){
+
324 for( auto& bud : petiole ) {
+
325 bud.state = state;
+
326 }
+
327 }
+
328}
+
329
+
330void Phytomer::setVegetativeBudState(BudState state, uint petiole_index, uint bud_index) {
+
331 if(petiole_index >= axillary_vegetative_buds.size() ){
+
332 helios_runtime_error("ERROR (Phytomer::setVegetativeBudState): Petiole index out of range.");
+
333 }
+
334 if(bud_index >= axillary_vegetative_buds.at(petiole_index).size() ){
+
335 helios_runtime_error("ERROR (Phytomer::setVegetativeBudState): Bud index out of range.");
+
336 }
+
337 setVegetativeBudState(state, axillary_vegetative_buds.at(petiole_index).at(bud_index) );
+
338}
+
339
+
340void Phytomer::setVegetativeBudState( BudState state, VegetativeBud &vbud ){
+
341 vbud.state = state;
+
342}
+
343
+
344void Phytomer::setFloralBudState(BudState state ) {
+
345 for( auto &petiole :floral_buds ) {
+
346 for ( auto &fbud : petiole ) {
+
347 if( !fbud.isterminal ) {
+
348 setFloralBudState(state, fbud);
+
349 }
+
350 }
+
351 }
+
352}
+
353
+
354void Phytomer::setFloralBudState(BudState state, uint petiole_index, uint bud_index) {
+
355 if (petiole_index >= floral_buds.size()) {
+
356 helios_runtime_error("ERROR (Phytomer::setFloralBudState): Petiole index out of range.");
+
357 }
+
358 if (bud_index >= floral_buds.at(petiole_index).size()) {
+
359 helios_runtime_error("ERROR (Phytomer::setFloralBudState): Bud index out of range.");
+
360 }
+
361 setFloralBudState(state, floral_buds.at(petiole_index).at(bud_index));
+
362}
+
363
+
364void Phytomer::setFloralBudState(BudState state, FloralBud &fbud ) {
+
365
+
366 // If state is already at the desired state, do nothing
+
367 if (fbud.state == state) {
+
368 return;
+
369 } else if (state == BUD_DORMANT || state == BUD_ACTIVE ) {
+
370 fbud.state = state;
+
371 return;
+
372 }
+
373
+
374 // Calculate carbon cost
+
375 if( state == BUD_FLOWER_CLOSED || (fbud.state == BUD_ACTIVE && state == BUD_FLOWER_OPEN ) ){ //state went from active to closed flower or open flower
+
376 float flower_cost = calculateFlowerConstructionCosts(fbud);
+
377 plantarchitecture_ptr->plant_instances.at(this->plantID).shoot_tree.at(this->parent_shoot_ID)->carbohydrate_pool_molC -= flower_cost;
+
378 }else if( state == BUD_FRUITING ){ //adding a fruit
+
379 float fruit_cost = calculateFruitConstructionCosts(fbud);
+
380 plantarchitecture_ptr->plant_instances.at(this->plantID).shoot_tree.at(this->parent_shoot_ID)->carbohydrate_pool_molC -= fruit_cost;
+
381 }
+
382
+
383 // Delete geometry from previous reproductive state (if present)
+
384 context_ptr->deleteObject( fbud.inflorescence_objIDs );
+
385 fbud.inflorescence_objIDs.resize(0);
+
386
+
387 if( plantarchitecture_ptr->build_context_geometry_peduncle ) {
+
388 context_ptr->deleteObject(fbud.peduncle_objIDs);
+
389 fbud.peduncle_objIDs.resize(0);
+
390 }
+
391
+
392 fbud.state = state;
+
393
+
394 if(state != BUD_DEAD ) { //add new reproductive organs
+
395
+
396 updateInflorescence(fbud);
+
397 fbud.time_counter = 0;
+
398 if (fbud.state == BUD_FRUITING) {
+
399 setInflorescenceScaleFraction(fbud, 0.25);
+
400 }
+
401
+
402 }
+
403
404
-
405
-
406}
-
407
-
-
408int Shoot::appendPhytomer(float internode_radius, float internode_length_max, float internode_length_scale_factor_fraction, float leaf_scale_factor_fraction) {
-
409
-
410 auto shoot_tree_ptr = &plantarchitecture_ptr->plant_instances.at(plantID).shoot_tree;
-
411
-
412 //Determine the parent internode and petiole axes for rotation of the new phytomer
-
413 vec3 parent_internode_axis;
-
414 vec3 parent_petiole_axis;
-
415 vec3 internode_base_position;
-
416 if( phytomers.empty() ) { //very first phytomer on shoot
-
417 if(parent_shoot_ID == -1 ) { //very first shoot of the plant
-
418 parent_internode_axis = make_vec3(0, 0, 1);
-
419 parent_petiole_axis = make_vec3(0, -1, 0);
-
420 }else{ //first phytomer of a new shoot
-
421 assert(parent_shoot_ID < shoot_tree_ptr->size() && parent_node_index < shoot_tree_ptr->at(parent_shoot_ID)->phytomers.size() );
-
422 parent_internode_axis = shoot_tree_ptr->at(parent_shoot_ID)->phytomers.at(parent_node_index)->getInternodeAxisVector(1.f);
-
423 parent_petiole_axis = shoot_tree_ptr->at(parent_shoot_ID)->phytomers.at(parent_node_index)->getPetioleAxisVector(0.f, parent_petiole_index);
-
424 }
-
425 internode_base_position = base_position;
-
426 }else{ //additional phytomer being added to an existing shoot
-
427 parent_internode_axis = phytomers.back()->getInternodeAxisVector(1.f);
-
428 parent_petiole_axis = phytomers.back()->getPetioleAxisVector(0.f, 0);
-
429 internode_base_position = shoot_internode_vertices.back().back();
-
430 }
-
431
-
432 std::shared_ptr<Phytomer> phytomer = std::make_shared<Phytomer>(shoot_parameters.phytomer_parameters, this, phytomers.size(), parent_internode_axis, parent_petiole_axis, internode_base_position, this->base_rotation, internode_radius, internode_length_max, internode_length_scale_factor_fraction, leaf_scale_factor_fraction, rank, plantarchitecture_ptr, context_ptr);
-
433
-
434 //Initialize phytomer vegetative bud types and state
-
435 for( auto& petiole : phytomer->axillary_vegetative_buds ) {
-
436 for (auto &vbud: petiole) {
-
437
-
438 //sample the bud shoot type and initialize its state
-
439 std::string child_shoot_type_label;
-
440 if (sampleChildShootType(child_shoot_type_label)) {
-
441 phytomer->setVegetativeBudState( BUD_DORMANT, vbud );
-
442 } else {
-
443 phytomer->setVegetativeBudState( BUD_DEAD, vbud );
-
444 }
-
445 vbud.shoot_type_label = child_shoot_type_label;
-
446
-
447 // if the shoot type does not require dormancy, bud should be set to active
-
448 if (!shoot_parameters.growth_requires_dormancy && vbud.state != BUD_DEAD) {
-
449 phytomer->setVegetativeBudState( BUD_ACTIVE, vbud );
-
450 }
+
405}
+
406
+
+
407int Shoot::appendPhytomer(float internode_radius, float internode_length_max, float internode_length_scale_factor_fraction, float leaf_scale_factor_fraction) {
+
408
+
409 auto shoot_tree_ptr = &plantarchitecture_ptr->plant_instances.at(plantID).shoot_tree;
+
410
+
411 //Determine the parent internode and petiole axes for rotation of the new phytomer
+
412 vec3 parent_internode_axis;
+
413 vec3 parent_petiole_axis;
+
414 vec3 internode_base_position;
+
415 if( phytomers.empty() ) { //very first phytomer on shoot
+
416 if(parent_shoot_ID == -1 ) { //very first shoot of the plant
+
417 parent_internode_axis = make_vec3(0, 0, 1);
+
418 parent_petiole_axis = make_vec3(0, -1, 0);
+
419 }else{ //first phytomer of a new shoot
+
420 assert(parent_shoot_ID < shoot_tree_ptr->size() && parent_node_index < shoot_tree_ptr->at(parent_shoot_ID)->phytomers.size() );
+
421 parent_internode_axis = shoot_tree_ptr->at(parent_shoot_ID)->phytomers.at(parent_node_index)->getInternodeAxisVector(1.f);
+
422 parent_petiole_axis = shoot_tree_ptr->at(parent_shoot_ID)->phytomers.at(parent_node_index)->getPetioleAxisVector(0.f, parent_petiole_index);
+
423 }
+
424 internode_base_position = base_position;
+
425 }else{ //additional phytomer being added to an existing shoot
+
426 parent_internode_axis = phytomers.back()->getInternodeAxisVector(1.f);
+
427 parent_petiole_axis = phytomers.back()->getPetioleAxisVector(0.f, 0);
+
428 internode_base_position = shoot_internode_vertices.back().back();
+
429 }
+
430
+
431 std::shared_ptr<Phytomer> phytomer = std::make_shared<Phytomer>(shoot_parameters.phytomer_parameters, this, phytomers.size(), parent_internode_axis, parent_petiole_axis, internode_base_position, this->base_rotation, internode_radius, internode_length_max, internode_length_scale_factor_fraction, leaf_scale_factor_fraction, rank, plantarchitecture_ptr, context_ptr);
+
432
+
433 //Initialize phytomer vegetative bud types and state
+
434 for( auto& petiole : phytomer->axillary_vegetative_buds ) {
+
435// for (auto &vbud: petiole) {
+
436//
+
437// //sample the bud shoot type and initialize its state
+
438// std::string child_shoot_type_label;
+
439// if (sampleChildShootType(child_shoot_type_label)) {
+
440// phytomer->setVegetativeBudState( BUD_DORMANT, vbud );
+
441// } else {
+
442// phytomer->setVegetativeBudState( BUD_DEAD, vbud );
+
443// }
+
444// vbud.shoot_type_label = child_shoot_type_label;
+
445//
+
446// // if the shoot type does not require dormancy, bud should be set to active
+
447// if (!shoot_parameters.growth_requires_dormancy && vbud.state != BUD_DEAD) {
+
448// phytomer->setVegetativeBudState( BUD_ACTIVE, vbud );
+
449// }
+
450// }
451
-
452 }
-
453 }
-
454
-
455 //Initialize phytomer floral bud types and state
-
456 uint petiole_index = 0;
-
457 for( auto& petiole : phytomer->floral_buds ) {
-
458 uint bud_index = 0;
-
459 for (auto &fbud: petiole) {
-
460
-
461 //Set state of phytomer buds
-
462 phytomer->setFloralBudState(BUD_DORMANT, fbud);
+
452 //sample the bud shoot type and initialize its state
+
453 std::string child_shoot_type_label;
+
454 bool child_bud_breaks = sampleChildShootType(child_shoot_type_label);
+
455 for (auto &vbud: petiole) {
+
456
+
457 if ( child_bud_breaks ) {
+
458 phytomer->setVegetativeBudState( BUD_DORMANT, vbud );
+
459 } else {
+
460 phytomer->setVegetativeBudState( BUD_DEAD, vbud );
+
461 }
+
462 vbud.shoot_type_label = child_shoot_type_label;
463
464 // if the shoot type does not require dormancy, bud should be set to active
-
465 if (!shoot_parameters.flowers_require_dormancy && fbud.state != BUD_DEAD) {
-
466 phytomer->setFloralBudState(BUD_ACTIVE, fbud);
+
465 if (!shoot_parameters.growth_requires_dormancy && vbud.state != BUD_DEAD) {
+
466 phytomer->setVegetativeBudState( BUD_ACTIVE, vbud );
467 }
-
468
-
469 fbud.parent_index = petiole_index;
-
470 fbud.bud_index = bud_index;
-
471
-
472 bud_index++;
-
473 }
-
474 petiole_index++;
-
475 }
+
468 }
+
469 }
+
470
+
471 //Initialize phytomer floral bud types and state
+
472 uint petiole_index = 0;
+
473 for( auto& petiole : phytomer->floral_buds ) {
+
474 uint bud_index = 0;
+
475 for (auto &fbud: petiole) {
476
-
477 shoot_tree_ptr->at(ID)->phytomers.push_back(phytomer);
-
478
-
479 //Set output object data 'age'
-
480 phytomer->age = 0;
-
481 if( plantarchitecture_ptr->build_context_geometry_internode ) {
-
482 //\todo This really only needs to be done once when the shoot is first created.
-
483 if( plantarchitecture_ptr->output_object_data.at("age") ) {
-
484 context_ptr->setObjectData(internode_tube_objID, "age", phytomer->age);
-
485 }
-
486 if( plantarchitecture_ptr->output_object_data.at("rank") ) {
-
487 context_ptr->setObjectData(internode_tube_objID, "rank", rank);
-
488 }
-
489 if( plantarchitecture_ptr->output_object_data.at("plantID") ) {
-
490 context_ptr->setObjectData(internode_tube_objID, "plantID", (int) plantID);
-
491 }
-
492 }
-
493 if( plantarchitecture_ptr->build_context_geometry_petiole ) {
-
494 if( plantarchitecture_ptr->output_object_data.at("age") ) {
-
495 context_ptr->setObjectData(phytomer->petiole_objIDs, "age", phytomer->age);
-
496 }
-
497 if( plantarchitecture_ptr->output_object_data.at("rank") ) {
-
498 context_ptr->setObjectData(phytomer->petiole_objIDs, "rank", phytomer->rank);
-
499 }
-
500 if( plantarchitecture_ptr->output_object_data.at("plantID") ) {
-
501 context_ptr->setObjectData(phytomer->petiole_objIDs, "plantID", (int) plantID);
-
502 }
-
503 }
-
504 if( plantarchitecture_ptr->output_object_data.at("age") ) {
-
505 context_ptr->setObjectData(phytomer->leaf_objIDs, "age", phytomer->age);
-
506 }
-
507 if( plantarchitecture_ptr->output_object_data.at("rank") ) {
-
508 context_ptr->setObjectData(phytomer->leaf_objIDs, "rank", phytomer->rank);
-
509 }
-
510 if( plantarchitecture_ptr->output_object_data.at("plantID") ) {
-
511 context_ptr->setObjectData(phytomer->leaf_objIDs, "plantID", (int)plantID);
-
512 }
-
513
-
514 if( plantarchitecture_ptr->output_object_data.at("leafID") ) {
-
515 for (auto &petiole: phytomer->leaf_objIDs) {
-
516 for (uint objID: petiole) {
-
517 context_ptr->setObjectData(objID, "leafID", (int) objID);
-
518 }
-
519 }
-
520 }
-
521
-
522 if( shoot_parameters.phytomer_parameters.phytomer_creation_function != nullptr ) {
-
523 shoot_parameters.phytomer_parameters.phytomer_creation_function(phytomer, current_node_number, this->parent_node_index, shoot_parameters.max_nodes.val(), plantarchitecture_ptr->plant_instances.at(plantID).current_age);
-
524 }
-
525
-
526 //calculate fully expanded/elongated carbon costs
-
527 this->carbohydrate_pool_molC -= phytomer->calculatePhytomerConstructionCosts();
-
528
-
529 return (int)phytomers.size()-1;
-
530
-
531}
+
477 //Set state of phytomer buds
+
478 phytomer->setFloralBudState(BUD_DORMANT, fbud);
+
479
+
480 // if the shoot type does not require dormancy, bud should be set to active
+
481 if (!shoot_parameters.flowers_require_dormancy && fbud.state != BUD_DEAD) {
+
482 phytomer->setFloralBudState(BUD_ACTIVE, fbud);
+
483 }
+
484
+
485 fbud.parent_index = petiole_index;
+
486 fbud.bud_index = bud_index;
+
487
+
488 bud_index++;
+
489 }
+
490 petiole_index++;
+
491 }
+
492
+
493 shoot_tree_ptr->at(ID)->phytomers.push_back(phytomer);
+
494
+
495 //Set output object data 'age'
+
496 phytomer->age = 0;
+
497 if( plantarchitecture_ptr->build_context_geometry_internode ) {
+
498 //\todo This really only needs to be done once when the shoot is first created.
+
499 if( plantarchitecture_ptr->output_object_data.at("age") ) {
+
500 context_ptr->setObjectData(internode_tube_objID, "age", phytomer->age);
+
501 }
+
502 if( plantarchitecture_ptr->output_object_data.at("rank") ) {
+
503 context_ptr->setObjectData(internode_tube_objID, "rank", rank);
+
504 }
+
505 if( plantarchitecture_ptr->output_object_data.at("plantID") ) {
+
506 context_ptr->setObjectData(internode_tube_objID, "plantID", (int) plantID);
+
507 }
+
508 }
+
509 if( plantarchitecture_ptr->build_context_geometry_petiole ) {
+
510 if( plantarchitecture_ptr->output_object_data.at("age") ) {
+
511 context_ptr->setObjectData(phytomer->petiole_objIDs, "age", phytomer->age);
+
512 }
+
513 if( plantarchitecture_ptr->output_object_data.at("rank") ) {
+
514 context_ptr->setObjectData(phytomer->petiole_objIDs, "rank", phytomer->rank);
+
515 }
+
516 if( plantarchitecture_ptr->output_object_data.at("plantID") ) {
+
517 context_ptr->setObjectData(phytomer->petiole_objIDs, "plantID", (int) plantID);
+
518 }
+
519 }
+
520 if( plantarchitecture_ptr->output_object_data.at("age") ) {
+
521 context_ptr->setObjectData(phytomer->leaf_objIDs, "age", phytomer->age);
+
522 }
+
523 if( plantarchitecture_ptr->output_object_data.at("rank") ) {
+
524 context_ptr->setObjectData(phytomer->leaf_objIDs, "rank", phytomer->rank);
+
525 }
+
526 if( plantarchitecture_ptr->output_object_data.at("plantID") ) {
+
527 context_ptr->setObjectData(phytomer->leaf_objIDs, "plantID", (int)plantID);
+
528 }
+
529
+
530 if( plantarchitecture_ptr->output_object_data.at("leafID") ) {
+
531 for (auto &petiole: phytomer->leaf_objIDs) {
+
532 for (uint objID: petiole) {
+
533 context_ptr->setObjectData(objID, "leafID", (int) objID);
+
534 }
+
535 }
+
536 }
+
537
+
538 if( shoot_parameters.phytomer_parameters.phytomer_creation_function != nullptr ) {
+
539 shoot_parameters.phytomer_parameters.phytomer_creation_function(phytomer, current_node_number, this->parent_node_index, shoot_parameters.max_nodes.val(), plantarchitecture_ptr->plant_instances.at(plantID).current_age);
+
540 }
+
541
+
542 //calculate fully expanded/elongated carbon costs
+
543 this->carbohydrate_pool_molC -= phytomer->calculatePhytomerConstructionCosts();
+
544
+
545 return (int)phytomers.size()-1;
+
546
+
547}
-
532
-
533void Shoot::breakDormancy(){
-
534
-
535 isdormant = false;
-
536
-
537 int phytomer_ind = 0;
-
538 for( auto &phytomer : phytomers ) {
-
539
-
540 for( auto& petiole : phytomer->floral_buds ) {
-
541 for (auto &fbud: petiole) {
-
542 if (fbud.state != BUD_DEAD) {
-
543 phytomer->setFloralBudState(BUD_ACTIVE, fbud);
-
544 }
-
545 if (meristem_is_alive && fbud.isterminal) {
-
546 phytomer->setFloralBudState(BUD_ACTIVE, fbud);
-
547 }
-
548 fbud.time_counter = 0;
-
549 }
-
550 }
-
551 for( auto& petiole : phytomer->axillary_vegetative_buds ) {
-
552 for (auto &vbud: petiole) {
-
553 if (vbud.state != BUD_DEAD) {
-
554 phytomer->setVegetativeBudState(BUD_ACTIVE, vbud);
-
555 }
-
556 }
-
557 }
-
558
-
559 isdormant = false;
-
560 phytomer_ind++;
-
561 }
-
562
-
563}
-
564
-
565void Shoot::makeDormant(){
-
566
-
567 isdormant = true;
-
568 dormancy_cycles++;
-
569
-
570 for( auto &phytomer : phytomers ){
-
571 for( auto& petiole : phytomer->floral_buds ) {
-
572 //all currently active lateral buds die at dormancy
-
573 for (auto &fbud: petiole) {
-
574 if (fbud.state != BUD_DORMANT) {
-
575 phytomer->setFloralBudState(BUD_DEAD, fbud);
-
576 }
-
577 }
-
578 }
-
579 for( auto& petiole : phytomer->axillary_vegetative_buds ) {
-
580 for (auto &vbud: petiole) {
-
581 if (vbud.state != BUD_DORMANT) {
-
582 phytomer->setVegetativeBudState(BUD_DEAD, vbud);
-
583 }
-
584 }
-
585 }
-
586 phytomer->removeLeaf();
-
587 phytomer->time_since_dormancy = 0;
-
588 phytomer->isdormant = true;
-
589 }
-
590
-
591 if (meristem_is_alive && shoot_parameters.flowers_require_dormancy && shoot_parameters.max_terminal_floral_buds.val() > 0) {
-
592 addTerminalFloralBud();
-
593 }
-
594
-
595}
-
596
-
597void Shoot::terminateApicalBud(){
-
598 this->meristem_is_alive = false;
-
599}
-
600
-
601void Shoot::terminateAxillaryVegetativeBuds() {
-
602
-
603 for( auto &phytomer : phytomers ){
-
604 for( auto& petiole : phytomer->axillary_vegetative_buds ) {
-
605 for (auto &vbud: petiole) {
-
606 phytomer->setVegetativeBudState( BUD_DEAD, vbud );
-
607 }
-
608 }
-
609 }
-
610
-
611}
+
548
+
549void Shoot::breakDormancy(){
+
550
+
551 isdormant = false;
+
552
+
553 int phytomer_ind = 0;
+
554 for( auto &phytomer : phytomers ) {
+
555
+
556 for( auto& petiole : phytomer->floral_buds ) {
+
557 for (auto &fbud: petiole) {
+
558 if (fbud.state != BUD_DEAD) {
+
559 phytomer->setFloralBudState(BUD_ACTIVE, fbud);
+
560 }
+
561 if (meristem_is_alive && fbud.isterminal) {
+
562 phytomer->setFloralBudState(BUD_ACTIVE, fbud);
+
563 }
+
564 fbud.time_counter = 0;
+
565 }
+
566 }
+
567 for( auto& petiole : phytomer->axillary_vegetative_buds ) {
+
568 for (auto &vbud: petiole) {
+
569 if (vbud.state != BUD_DEAD) {
+
570 phytomer->setVegetativeBudState(BUD_ACTIVE, vbud);
+
571 }
+
572 }
+
573 }
+
574
+
575 isdormant = false;
+
576 phytomer_ind++;
+
577 }
+
578
+
579}
+
580
+
581void Shoot::makeDormant(){
+
582
+
583 isdormant = true;
+
584 dormancy_cycles++;
+
585
+
586 for( auto &phytomer : phytomers ){
+
587 for( auto& petiole : phytomer->floral_buds ) {
+
588 //all currently active lateral buds die at dormancy
+
589 for (auto &fbud: petiole) {
+
590 if (fbud.state != BUD_DORMANT) {
+
591 phytomer->setFloralBudState(BUD_DEAD, fbud);
+
592 }
+
593 }
+
594 }
+
595 for( auto& petiole : phytomer->axillary_vegetative_buds ) {
+
596 for (auto &vbud: petiole) {
+
597 if (vbud.state != BUD_DORMANT) {
+
598 phytomer->setVegetativeBudState(BUD_DEAD, vbud);
+
599 }
+
600 }
+
601 }
+
602 if( !plantarchitecture_ptr->plant_instances.at(plantID).is_evergreen ) {
+
603 phytomer->removeLeaf();
+
604 }
+
605 phytomer->time_since_dormancy = 0;
+
606 phytomer->isdormant = true;
+
607 }
+
608
+
609 if (meristem_is_alive && shoot_parameters.flowers_require_dormancy && shoot_parameters.max_terminal_floral_buds.val() > 0) {
+
610 addTerminalFloralBud();
+
611 }
612
-
613void Shoot::addTerminalFloralBud(){
+
613}
614
-
615 int Nbuds = shoot_parameters.max_terminal_floral_buds.val();
-
616 for( int bud=0; bud<Nbuds; bud++ ) {
-
617
-
618 FloralBud bud_new;
-
619 bud_new.isterminal = true;
-
620 bud_new.parent_index = 0;
-
621 bud_new.bud_index = bud;
-
622 bud_new.base_position = shoot_internode_vertices.back().back();
-
623 float pitch_adjustment = 0;
-
624 if( Nbuds>1 ){
-
625 pitch_adjustment = deg2rad(30);
+
615void Shoot::terminateApicalBud(){
+
616 this->meristem_is_alive = false;
+
617}
+
618
+
619void Shoot::terminateAxillaryVegetativeBuds() {
+
620
+
621 for( auto &phytomer : phytomers ){
+
622 for( auto& petiole : phytomer->axillary_vegetative_buds ) {
+
623 for (auto &vbud: petiole) {
+
624 phytomer->setVegetativeBudState( BUD_DEAD, vbud );
+
625 }
626 }
-
627 float yaw_adjustment = bud_new.bud_index * 2.f * M_PI / float(Nbuds);//-0.25f * M_PI + bud_new.bud_index * 0.5f * M_PI / float(Nbuds);
-
628 bud_new.base_rotation = make_AxisRotation(pitch_adjustment, yaw_adjustment, 0);
-
629 bud_new.bending_axis = make_vec3(1, 0, 0);
+
627 }
+
628
+
629}
630
-
631 phytomers.back()->floral_buds.push_back({bud_new});
-
632 }
-
633
-
634 shoot_parameters.max_terminal_floral_buds.resample();
+
631void Shoot::addTerminalFloralBud(){
+
632
+
633 int Nbuds = shoot_parameters.max_terminal_floral_buds.val();
+
634 for( int bud=0; bud<Nbuds; bud++ ) {
635
-
636}
-
637
-
638float Shoot::calculateShootInternodeVolume() const{
-
639
-
640 float shoot_volume = 0;
-
641 for( const auto &phytomer : phytomers ) {
-
642// for (uint internode_objID : phytomer->internode_objID) {
-
643// shoot_volume += context_ptr->getConeObjectVolume(internode_objID);
-
644// }
-
645 shoot_volume += context_ptr->getTubeObjectVolume(internode_tube_objID);
-
646 }
-
647 return shoot_volume;
+
636 FloralBud bud_new;
+
637 bud_new.isterminal = true;
+
638 bud_new.parent_index = 0;
+
639 bud_new.bud_index = bud;
+
640 bud_new.base_position = shoot_internode_vertices.back().back();
+
641 float pitch_adjustment = 0;
+
642 if( Nbuds>1 ){
+
643 pitch_adjustment = deg2rad(30);
+
644 }
+
645 float yaw_adjustment = bud_new.bud_index * 2.f * M_PI / float(Nbuds);//-0.25f * M_PI + bud_new.bud_index * 0.5f * M_PI / float(Nbuds);
+
646 bud_new.base_rotation = make_AxisRotation(pitch_adjustment, yaw_adjustment, 0);
+
647 bud_new.bending_axis = make_vec3(1, 0, 0);
648
-
649}
-
650
-
651float Shoot::calculateShootLength() const{
-
652
-
653 float shoot_length = 0;
-
654 for( const auto &phytomer : phytomers ) {
-
655 shoot_length += phytomer->getInternodeLength();
-
656 }
-
657 return shoot_length;
-
658
-
659}
-
660
-
-
661void Shoot::updateShootNodes(bool update_context_geometry) {
-
662
-
663 // make shoot origin consistent with parent shoot node position
-
664 if( parent_shoot_ID>=0 ) { //only if not the base shoot
-
665
-
666 auto parent_shoot = plantarchitecture_ptr->plant_instances.at(plantID).shoot_tree.at(parent_shoot_ID);
-
667
-
668 const vec3 &current_origin = shoot_internode_vertices.front().front();
-
669 const vec3 &updated_origin = parent_shoot->shoot_internode_vertices.at(this->parent_node_index).back();
-
670 vec3 shift = updated_origin - current_origin;
-
671
-
672 //shift shoot based outward by the radius of the parent internode
-
673// shift += radial_outward_axis * parent_shoot->shoot_internode_radii.at(this->parent_node_index).back();
-
674
-
675 if (shift != nullorigin) {
-
676 for (auto &phytomer: shoot_internode_vertices) {
-
677 for (vec3 &node: phytomer) {
-
678 node += shift;
-
679 }
-
680 }
-
681 }
-
682
-
683 }
-
684
-
685 if (update_context_geometry && plantarchitecture_ptr->build_context_geometry_internode && context_ptr->doesObjectExist(internode_tube_objID) ){
-
686 context_ptr->setTubeRadii( internode_tube_objID, flatten(shoot_internode_radii) );
-
687 context_ptr->setTubeNodes(internode_tube_objID, flatten(shoot_internode_vertices));
-
688 }
+
649 phytomers.back()->floral_buds.push_back({bud_new});
+
650 }
+
651
+
652 shoot_parameters.max_terminal_floral_buds.resample();
+
653
+
654}
+
655
+
656float Shoot::calculateShootInternodeVolume() const{
+
657
+
658 float shoot_volume = 0;
+
659 for( const auto &phytomer : phytomers ) {
+
660// for (uint internode_objID : phytomer->internode_objID) {
+
661// shoot_volume += context_ptr->getConeObjectVolume(internode_objID);
+
662// }
+
663 shoot_volume += context_ptr->getTubeObjectVolume(internode_tube_objID);
+
664 }
+
665 return shoot_volume;
+
666
+
667}
+
668
+
669float Shoot::calculateShootLength() const{
+
670
+
671 float shoot_length = 0;
+
672 for( const auto &phytomer : phytomers ) {
+
673 shoot_length += phytomer->getInternodeLength();
+
674 }
+
675 return shoot_length;
+
676
+
677}
+
678
+
+
679void Shoot::updateShootNodes(bool update_context_geometry) {
+
680
+
681 // make shoot origin consistent with parent shoot node position
+
682 if( parent_shoot_ID>=0 ) { //only if not the base shoot
+
683
+
684 auto parent_shoot = plantarchitecture_ptr->plant_instances.at(plantID).shoot_tree.at(parent_shoot_ID);
+
685
+
686 const vec3 &current_origin = shoot_internode_vertices.front().front();
+
687 const vec3 &updated_origin = parent_shoot->shoot_internode_vertices.at(this->parent_node_index).back();
+
688 vec3 shift = updated_origin - current_origin;
689
-
690 //update petiole/leaf positions
-
691 for( int p=0; p<phytomers.size(); p++ ){
-
692 vec3 petiole_base = shoot_internode_vertices.at(p).back();
-
693 if( parent_shoot_ID>=0 ) { //shift petiole base outward by the parent internode radius
-
694 auto parent_shoot = plantarchitecture_ptr->plant_instances.at(plantID).shoot_tree.at(parent_shoot_ID);
-
695// petiole_base += radial_outward_axis * parent_shoot->shoot_internode_radii.at(this->parent_node_index).back();
-
696 }
-
697 phytomers.at(p)->setPetioleBase( petiole_base );
-
698 }
-
699
-
700 //update terminal buds
-
701// for( int p=0; p<phytomers.size(); p++ ){
-
702// auto phytomer = phytomers.at(p);
-
703// if( phytomer->floral_buds.empty() || phytomer->floral_buds.back().empty() ){
-
704// continue;
-
705// }
-
706// FloralBud fbud = phytomer->floral_buds.back().back();
-
707// if (fbud.isterminal) {
-
708// vec3 shift = fbud.base_position;
-
709// fbud.base_position = shoot_internode_vertices.back().back();
-
710// shift = fbud.base_position - shift;
-
711// context_ptr->translateObject(fbud.inflorescence_objIDs, shift);
-
712// for (auto &base: fbud.inflorescence_bases) {
-
713// base += shift;
-
714// }
-
715// if (phytomer->build_context_geometry_peduncle) {
-
716// context_ptr->translateObject(fbud.peduncle_objIDs, shift);
-
717// }
-
718// }
-
719// }
-
720
-
721 // update child shoot origins
-
722 for( auto child : childIDs ){
-
723 uint child_shoot_ID = child.second;
-
724 plantarchitecture_ptr->plant_instances.at(plantID).shoot_tree.at(child_shoot_ID)->updateShootNodes(update_context_geometry);
-
725 }
-
726
-
727}
+
690 //shift shoot based outward by the radius of the parent internode
+
691// shift += radial_outward_axis * parent_shoot->shoot_internode_radii.at(this->parent_node_index).back();
+
692
+
693 if (shift != nullorigin) {
+
694 for (auto &phytomer: shoot_internode_vertices) {
+
695 for (vec3 &node: phytomer) {
+
696 node += shift;
+
697 }
+
698 }
+
699 }
+
700
+
701 }
+
702
+
703 if (update_context_geometry && plantarchitecture_ptr->build_context_geometry_internode && context_ptr->doesObjectExist(internode_tube_objID) ){
+
704 context_ptr->setTubeRadii( internode_tube_objID, flatten(shoot_internode_radii) );
+
705 context_ptr->setTubeNodes(internode_tube_objID, flatten(shoot_internode_vertices));
+
706 }
+
707
+
708 //update petiole/leaf positions
+
709 for( int p=0; p<phytomers.size(); p++ ){
+
710 vec3 petiole_base = shoot_internode_vertices.at(p).back();
+
711 if( parent_shoot_ID>=0 ) { //shift petiole base outward by the parent internode radius
+
712 auto parent_shoot = plantarchitecture_ptr->plant_instances.at(plantID).shoot_tree.at(parent_shoot_ID);
+
713// petiole_base += radial_outward_axis * parent_shoot->shoot_internode_radii.at(this->parent_node_index).back();
+
714 }
+
715 phytomers.at(p)->setPetioleBase( petiole_base );
+
716 }
+
717
+
718 // update child shoot origins
+
719 for( auto node : childIDs ){
+
720 for( int child_shoot_ID : node.second ) {
+
721 plantarchitecture_ptr->plant_instances.at(plantID).shoot_tree.at(child_shoot_ID)->updateShootNodes(update_context_geometry);
+
722 }
+
723 }
+
724
+
725}
+
726
+
727helios::vec3 Shoot::getShootAxisVector( float shoot_fraction ) const{
728
-
729helios::vec3 Shoot::getShootAxisVector( float shoot_fraction ) const{
+
729 uint phytomer_count = this->phytomers.size();
730
-
731 uint phytomer_count = this->phytomers.size();
-
732
-
733 uint phytomer_index = 0;
-
734 if( shoot_fraction>0 ){
-
735 phytomer_index = std::ceil( shoot_fraction * float(phytomer_count) ) - 1;
-
736 }
+
731 uint phytomer_index = 0;
+
732 if( shoot_fraction>0 ){
+
733 phytomer_index = std::ceil( shoot_fraction * float(phytomer_count) ) - 1;
+
734 }
+
735
+
736 assert( phytomer_index>=0 && phytomer_index<phytomer_count );
737
-
738 assert( phytomer_index>=0 && phytomer_index<phytomer_count );
+
738 return this->phytomers.at(phytomer_index)->getInternodeAxisVector(0.5);
739
-
740 return this->phytomers.at(phytomer_index)->getInternodeAxisVector(0.5);
+
740}
741
-
742}
+
742float Shoot::sumShootLeafArea( uint start_node_index ) const{
743
-
744Phytomer::Phytomer(const PhytomerParameters &params, Shoot *parent_shoot, uint phytomer_index, const helios::vec3 &parent_internode_axis, const helios::vec3 &parent_petiole_axis, helios::vec3 internode_base_origin,
-
745 const AxisRotation &shoot_base_rotation, float internode_radius, float internode_length_max, float internode_length_scale_factor_fraction, float leaf_scale_factor_fraction, uint rank, PlantArchitecture *plantarchitecture_ptr,
-
746 helios::Context *context_ptr)
-
747 : context_ptr(context_ptr), plantarchitecture_ptr(plantarchitecture_ptr), rank(rank) {
-
748
-
749 phytomer_parameters = params; //note this needs to be an assignment operation not a copy in order to re-randomize all the parameters
-
750
-
751 ShootParameters parent_shoot_parameters = parent_shoot->shoot_parameters;
-
752
-
753 this->internode_radius_initial = internode_radius;
-
754 this->internode_radius_max = parent_shoot_parameters.internode_radius_max.val();
-
755 this->internode_length_max = internode_length_max;
-
756 this->shoot_index = make_int3(phytomer_index, parent_shoot->current_node_number, parent_shoot_parameters.max_nodes.val()); //.x is the index of the phytomer along the shoot, .y is the current number of phytomers on the parent shoot, .z is the maximum number of phytomers on the parent shoot.
-
757 this->rank = parent_shoot->rank;
-
758 this->plantID = parent_shoot->plantID;
-
759 this->parent_shoot_ID = parent_shoot->ID;
-
760 this->parent_shoot_ptr = parent_shoot;
+
744 if( start_node_index>=phytomers.size() ){
+
745 helios_runtime_error("ERROR (Shoot::sumShootLeafArea): Start node index out of range.");
+
746 }
+
747
+
748 float area = 0;
+
749
+
750 for( uint p=start_node_index; p<phytomers.size(); p++ ){
+
751
+
752 //sum up leaves directly connected to this shoot
+
753 auto phytomer = phytomers.at(p);
+
754 for( auto &petiole : phytomer->leaf_objIDs ){
+
755 for( uint objID : petiole ) {
+
756 if( context_ptr->doesObjectExist(objID) ) {
+
757 area += context_ptr->getObjectArea(objID);
+
758 }
+
759 }
+
760 }
761
-
762 bool build_context_geometry_internode = plantarchitecture_ptr->build_context_geometry_internode;
-
763 bool build_context_geometry_petiole = plantarchitecture_ptr->build_context_geometry_petiole;
-
764 bool build_context_geometry_peduncle = plantarchitecture_ptr->build_context_geometry_peduncle;
-
765
-
766// if( internode_radius==0.f || internode_length_max==0.f || parent_shoot_parameters.internode_radius_max.val()==0.f ){
-
767// build_context_geometry_internode = false;
-
768// }
-
769
-
770 //Number of longitudinal segments for internode and petiole
-
771 //if Ndiv=0, use Ndiv=1 (but don't add any primitives to Context)
-
772 uint Ndiv_internode_length = std::max(uint(1), phytomer_parameters.internode.length_segments);
-
773 uint Ndiv_internode_radius = std::max(uint(3), phytomer_parameters.internode.radial_subdivisions);
-
774 uint Ndiv_petiole_length = std::max(uint(1), phytomer_parameters.petiole.length_segments);
-
775 uint Ndiv_petiole_radius = std::max(uint(3), phytomer_parameters.petiole.radial_subdivisions);
-
776
-
777 //Flags to determine whether internode geometry should be built in the Context. Not building all geometry can save memory and computation time.
-
778 if( phytomer_parameters.internode.length_segments==0 || phytomer_parameters.internode.radial_subdivisions<3 ){
-
779 build_context_geometry_internode = false;
-
780 }
-
781 if( phytomer_parameters.petiole.length_segments==0 || phytomer_parameters.petiole.radial_subdivisions<3 ){
-
782 build_context_geometry_petiole = false;
-
783 }
-
784
-
785 if( phytomer_parameters.petiole.petioles_per_internode<1 ){
-
786 build_context_geometry_petiole = false;
-
787 phytomer_parameters.petiole.petioles_per_internode = 1;
-
788 phytomer_parameters.leaf.leaves_per_petiole = 0;
-
789 }
-
790
-
791 if( phytomer_parameters.petiole.petioles_per_internode==0 ){
-
792 helios_runtime_error("ERROR (PlantArchitecture::Phytomer): Number of petioles per internode must be greater than zero.");
-
793 }
-
794
-
795 current_internode_scale_factor = internode_length_scale_factor_fraction;
-
796 current_leaf_scale_factor = leaf_scale_factor_fraction;
-
797
-
798 if( internode_radius==0.f ){
-
799 internode_radius = 1e-5;
-
800 }
-
801
-
802 //Initialize internode variables
-
803 float internode_length = internode_length_scale_factor_fraction * internode_length_max;
-
804 float dr_internode = internode_length / float(phytomer_parameters.internode.length_segments);
-
805 float dr_internode_max = internode_length_max / float(phytomer_parameters.internode.length_segments);
-
806 std::vector<vec3> phytomer_internode_vertices;
-
807 std::vector<float> phytomer_internode_radii;
-
808 phytomer_internode_vertices.resize(Ndiv_internode_length + 1);
-
809 phytomer_internode_vertices.at(0) = internode_base_origin;
-
810 phytomer_internode_radii.resize(Ndiv_internode_length + 1);
-
811 phytomer_internode_radii.at(0) = internode_radius;
-
812 internode_pitch = deg2rad(phytomer_parameters.internode.pitch.val());
-
813 phytomer_parameters.internode.pitch.resample();
-
814 internode_phyllotactic_angle = deg2rad(phytomer_parameters.internode.phyllotactic_angle.val());
-
815 phytomer_parameters.internode.phyllotactic_angle.resample();
-
816
-
817 //initialize petiole variables
-
818 petiole_length.resize(phytomer_parameters.petiole.petioles_per_internode);
-
819 petiole_vertices.resize( phytomer_parameters.petiole.petioles_per_internode );
-
820 petiole_radii.resize( phytomer_parameters.petiole.petioles_per_internode );
-
821 std::vector<float> dr_petiole(phytomer_parameters.petiole.petioles_per_internode);
-
822 std::vector<float> dr_petiole_max(phytomer_parameters.petiole.petioles_per_internode);
-
823 for( int p=0; p<phytomer_parameters.petiole.petioles_per_internode; p++ ) {
-
824
-
825 petiole_vertices.at(p).resize(Ndiv_petiole_length + 1);
-
826 petiole_radii.at(p).resize(Ndiv_petiole_length + 1);
-
827
-
828 petiole_length.at(p) = leaf_scale_factor_fraction * phytomer_parameters.petiole.length.val();
-
829 dr_petiole.at(p) = petiole_length.at(p) / float(phytomer_parameters.petiole.length_segments);
-
830 dr_petiole_max.at(p) = phytomer_parameters.petiole.length.val() / float(phytomer_parameters.petiole.length_segments);
-
831
-
832 petiole_radii.at(p).at(0) = leaf_scale_factor_fraction * phytomer_parameters.petiole.radius.val();
-
833
-
834 }
-
835 phytomer_parameters.petiole.length.resample();
-
836 if( build_context_geometry_petiole ) {
-
837 petiole_objIDs.resize(phytomer_parameters.petiole.petioles_per_internode);
-
838 }
-
839
-
840 //initialize leaf variables
-
841 leaf_bases.resize(phytomer_parameters.petiole.petioles_per_internode);
-
842 leaf_objIDs.resize(phytomer_parameters.petiole.petioles_per_internode);
-
843 leaf_size_max.resize(phytomer_parameters.petiole.petioles_per_internode);
-
844 leaf_rotation.resize(phytomer_parameters.petiole.petioles_per_internode);
-
845 uint leaves_per_petiole = phytomer_parameters.leaf.leaves_per_petiole.val();
-
846 phytomer_parameters.leaf.leaves_per_petiole.resample();
-
847 for( uint petiole=0; petiole<phytomer_parameters.petiole.petioles_per_internode; petiole++ ) {
-
848 leaf_size_max.at(petiole).resize(leaves_per_petiole);
-
849 leaf_rotation.at(petiole).resize(leaves_per_petiole);
-
850 }
-
851
-
852 internode_colors.resize(Ndiv_internode_length + 1 );
-
853 internode_colors.at(0) = phytomer_parameters.internode.color;
-
854 petiole_colors.resize(Ndiv_petiole_length + 1 );
-
855 petiole_colors.at(0) = phytomer_parameters.petiole.color;
-
856
-
857 vec3 internode_axis = parent_internode_axis;
+
762 //call recursively for child shoots
+
763 if( childIDs.find(p)!=childIDs.end() ){
+
764 for( int child_shoot_ID : childIDs.at(p) ) {
+
765 area += plantarchitecture_ptr->plant_instances.at(plantID).shoot_tree.at(child_shoot_ID)->sumShootLeafArea(0);
+
766 }
+
767 }
+
768
+
769 }
+
770
+
771 return area;
+
772
+
773}
+
774
+
775Phytomer::Phytomer(const PhytomerParameters &params, Shoot *parent_shoot, uint phytomer_index, const helios::vec3 &parent_internode_axis, const helios::vec3 &parent_petiole_axis, helios::vec3 internode_base_origin,
+
776 const AxisRotation &shoot_base_rotation, float internode_radius, float internode_length_max, float internode_length_scale_factor_fraction, float leaf_scale_factor_fraction, uint rank, PlantArchitecture *plantarchitecture_ptr,
+
777 helios::Context *context_ptr)
+
778 : context_ptr(context_ptr), plantarchitecture_ptr(plantarchitecture_ptr), rank(rank) {
+
779
+
780 phytomer_parameters = params; //note this needs to be an assignment operation not a copy in order to re-randomize all the parameters
+
781
+
782 ShootParameters parent_shoot_parameters = parent_shoot->shoot_parameters;
+
783
+
784 this->internode_radius_initial = internode_radius;
+
785 this->internode_radius_max = parent_shoot_parameters.internode_radius_max.val();
+
786 this->internode_length_max = internode_length_max;
+
787 this->shoot_index = make_int3(phytomer_index, parent_shoot->current_node_number, parent_shoot_parameters.max_nodes.val()); //.x is the index of the phytomer along the shoot, .y is the current number of phytomers on the parent shoot, .z is the maximum number of phytomers on the parent shoot.
+
788 this->rank = parent_shoot->rank;
+
789 this->plantID = parent_shoot->plantID;
+
790 this->parent_shoot_ID = parent_shoot->ID;
+
791 this->parent_shoot_ptr = parent_shoot;
+
792
+
793 bool build_context_geometry_internode = plantarchitecture_ptr->build_context_geometry_internode;
+
794 bool build_context_geometry_petiole = plantarchitecture_ptr->build_context_geometry_petiole;
+
795 bool build_context_geometry_peduncle = plantarchitecture_ptr->build_context_geometry_peduncle;
+
796
+
797// if( internode_radius==0.f || internode_length_max==0.f || parent_shoot_parameters.internode_radius_max.val()==0.f ){
+
798// build_context_geometry_internode = false;
+
799// }
+
800
+
801 //Number of longitudinal segments for internode and petiole
+
802 //if Ndiv=0, use Ndiv=1 (but don't add any primitives to Context)
+
803 uint Ndiv_internode_length = std::max(uint(1), phytomer_parameters.internode.length_segments);
+
804 uint Ndiv_internode_radius = std::max(uint(3), phytomer_parameters.internode.radial_subdivisions);
+
805 uint Ndiv_petiole_length = std::max(uint(1), phytomer_parameters.petiole.length_segments);
+
806 uint Ndiv_petiole_radius = std::max(uint(3), phytomer_parameters.petiole.radial_subdivisions);
+
807
+
808 //Flags to determine whether internode geometry should be built in the Context. Not building all geometry can save memory and computation time.
+
809 if( phytomer_parameters.internode.length_segments==0 || phytomer_parameters.internode.radial_subdivisions<3 ){
+
810 build_context_geometry_internode = false;
+
811 }
+
812 if( phytomer_parameters.petiole.length_segments==0 || phytomer_parameters.petiole.radial_subdivisions<3 ){
+
813 build_context_geometry_petiole = false;
+
814 }
+
815
+
816 if( phytomer_parameters.petiole.petioles_per_internode<1 ){
+
817 build_context_geometry_petiole = false;
+
818 phytomer_parameters.petiole.petioles_per_internode = 1;
+
819 phytomer_parameters.leaf.leaves_per_petiole = 0;
+
820 }
+
821
+
822 if( phytomer_parameters.petiole.petioles_per_internode==0 ){
+
823 helios_runtime_error("ERROR (PlantArchitecture::Phytomer): Number of petioles per internode must be greater than zero.");
+
824 }
+
825
+
826 current_internode_scale_factor = internode_length_scale_factor_fraction;
+
827 current_leaf_scale_factor = leaf_scale_factor_fraction;
+
828
+
829 if( internode_radius==0.f ){
+
830 internode_radius = 1e-5;
+
831 }
+
832
+
833 //Initialize internode variables
+
834 float internode_length = internode_length_scale_factor_fraction * internode_length_max;
+
835 float dr_internode = internode_length / float(phytomer_parameters.internode.length_segments);
+
836 float dr_internode_max = internode_length_max / float(phytomer_parameters.internode.length_segments);
+
837 std::vector<vec3> phytomer_internode_vertices;
+
838 std::vector<float> phytomer_internode_radii;
+
839 phytomer_internode_vertices.resize(Ndiv_internode_length + 1);
+
840 phytomer_internode_vertices.at(0) = internode_base_origin;
+
841 phytomer_internode_radii.resize(Ndiv_internode_length + 1);
+
842 phytomer_internode_radii.at(0) = internode_radius;
+
843 internode_pitch = deg2rad(phytomer_parameters.internode.pitch.val());
+
844 phytomer_parameters.internode.pitch.resample();
+
845 internode_phyllotactic_angle = deg2rad(phytomer_parameters.internode.phyllotactic_angle.val());
+
846 phytomer_parameters.internode.phyllotactic_angle.resample();
+
847
+
848 //initialize petiole variables
+
849 petiole_length.resize(phytomer_parameters.petiole.petioles_per_internode);
+
850 petiole_vertices.resize( phytomer_parameters.petiole.petioles_per_internode );
+
851 petiole_radii.resize( phytomer_parameters.petiole.petioles_per_internode );
+
852 std::vector<float> dr_petiole(phytomer_parameters.petiole.petioles_per_internode);
+
853 std::vector<float> dr_petiole_max(phytomer_parameters.petiole.petioles_per_internode);
+
854 for( int p=0; p<phytomer_parameters.petiole.petioles_per_internode; p++ ) {
+
855
+
856 petiole_vertices.at(p).resize(Ndiv_petiole_length + 1);
+
857 petiole_radii.at(p).resize(Ndiv_petiole_length + 1);
858
-
859 vec3 petiole_rotation_axis = cross(parent_internode_axis, parent_petiole_axis );
-
860 if(petiole_rotation_axis == make_vec3(0, 0, 0) ){
-
861 petiole_rotation_axis = make_vec3(1, 0, 0);
-
862 }
-
863
-
864 if( phytomer_index==0 ){ //if this is the first phytomer along a shoot, apply the origin rotation about the parent axis
-
865
-
866 //internode pitch rotation for phytomer base
-
867 if( internode_pitch!=0.f ) {
-
868 internode_axis = rotatePointAboutLine(internode_axis, nullorigin, petiole_rotation_axis, 0.5f*internode_pitch );
-
869 }
+
859 petiole_length.at(p) = leaf_scale_factor_fraction * phytomer_parameters.petiole.length.val();
+
860 dr_petiole.at(p) = petiole_length.at(p) / float(phytomer_parameters.petiole.length_segments);
+
861 dr_petiole_max.at(p) = phytomer_parameters.petiole.length.val() / float(phytomer_parameters.petiole.length_segments);
+
862
+
863 petiole_radii.at(p).at(0) = leaf_scale_factor_fraction * phytomer_parameters.petiole.radius.val();
+
864
+
865 }
+
866 phytomer_parameters.petiole.length.resample();
+
867 if( build_context_geometry_petiole ) {
+
868 petiole_objIDs.resize(phytomer_parameters.petiole.petioles_per_internode);
+
869 }
870
-
871 //internode roll rotation for shoot base rotation
-
872 float roll_nudge = 0.f;
-
873 if( shoot_base_rotation.roll/180.f == floor(shoot_base_rotation.roll/180.f) ) {
-
874 roll_nudge = 0.2;
-
875 }
-
876 if( shoot_base_rotation.roll!=0.f || roll_nudge!=0.f ){
-
877 petiole_rotation_axis = rotatePointAboutLine(petiole_rotation_axis, nullorigin, parent_internode_axis,shoot_base_rotation.roll + roll_nudge ); //small additional rotation is to make sure the petiole is not exactly vertical
-
878 internode_axis = rotatePointAboutLine(internode_axis, nullorigin, parent_internode_axis,shoot_base_rotation.roll + roll_nudge );
-
879 }
-
880
-
881 vec3 base_pitch_axis = -1*cross(parent_internode_axis, parent_petiole_axis );
+
871 //initialize leaf variables
+
872 leaf_bases.resize(phytomer_parameters.petiole.petioles_per_internode);
+
873 leaf_objIDs.resize(phytomer_parameters.petiole.petioles_per_internode);
+
874 leaf_size_max.resize(phytomer_parameters.petiole.petioles_per_internode);
+
875 leaf_rotation.resize(phytomer_parameters.petiole.petioles_per_internode);
+
876 uint leaves_per_petiole = phytomer_parameters.leaf.leaves_per_petiole.val();
+
877 phytomer_parameters.leaf.leaves_per_petiole.resample();
+
878 for( uint petiole=0; petiole<phytomer_parameters.petiole.petioles_per_internode; petiole++ ) {
+
879 leaf_size_max.at(petiole).resize(leaves_per_petiole);
+
880 leaf_rotation.at(petiole).resize(leaves_per_petiole);
+
881 }
882
-
883 //internode pitch rotation for shoot base rotation
-
884 if( shoot_base_rotation.pitch!=0.f ) {
-
885 petiole_rotation_axis = rotatePointAboutLine(petiole_rotation_axis, nullorigin, base_pitch_axis, -shoot_base_rotation.pitch);
-
886 internode_axis = rotatePointAboutLine(internode_axis, nullorigin, base_pitch_axis, -shoot_base_rotation.pitch);
-
887 }
-
888
-
889 //internode yaw rotation for shoot base rotation
-
890 if( shoot_base_rotation.yaw!=0 ){
-
891 petiole_rotation_axis = rotatePointAboutLine(petiole_rotation_axis, nullorigin, parent_internode_axis, shoot_base_rotation.yaw);
-
892 internode_axis = rotatePointAboutLine(internode_axis, nullorigin, parent_internode_axis, shoot_base_rotation.yaw );
-
893 }
+
883 internode_colors.resize(Ndiv_internode_length + 1 );
+
884 internode_colors.at(0) = phytomer_parameters.internode.color;
+
885 petiole_colors.resize(Ndiv_petiole_length + 1 );
+
886 petiole_colors.at(0) = phytomer_parameters.petiole.color;
+
887
+
888 vec3 internode_axis = parent_internode_axis;
+
889
+
890 vec3 petiole_rotation_axis = cross(parent_internode_axis, parent_petiole_axis );
+
891 if(petiole_rotation_axis == make_vec3(0, 0, 0) ){
+
892 petiole_rotation_axis = make_vec3(1, 0, 0);
+
893 }
894
-
895 parent_shoot->radial_outward_axis = rotatePointAboutLine(internode_axis, nullorigin, petiole_rotation_axis, 0.5f*M_PI );
+
895 if( phytomer_index==0 ){ //if this is the first phytomer along a shoot, apply the origin rotation about the parent axis
896
-
897// if( parent_shoot->parent_shoot_ID>=0 ) { //if this is not the first shoot on the plant (i.e. it has a parent shoot
-
898// auto parent_of_parent_shoot = plantarchitecture_ptr->plant_instances.at(plantID).shoot_tree.at(parent_shoot->parent_shoot_ID);
-
899// phytomer_internode_vertices.at(0) += parent_shoot->radial_outward_axis * parent_of_parent_shoot->shoot_internode_radii.at(parent_shoot->parent_node_index).back();
-
900// }
+
897 //internode pitch rotation for phytomer base
+
898 if( internode_pitch!=0.f ) {
+
899 internode_axis = rotatePointAboutLine(internode_axis, nullorigin, petiole_rotation_axis, 0.5f*internode_pitch );
+
900 }
901
-
902 }else {
-
903
-
904 //internode pitch rotation for phytomer base
-
905 if ( internode_pitch != 0) {
-
906 internode_axis = rotatePointAboutLine(internode_axis, nullorigin, petiole_rotation_axis,-1.25f*internode_pitch );
-
907 }
-
908
-
909 }
-
910
-
911 vec3 shoot_bending_axis = cross( internode_axis, make_vec3(0,0,1) );
+
902 //internode roll rotation for shoot base rotation
+
903 float roll_nudge = 0.f;
+
904 //\todo Not clear if this is still needed. It causes problems when you want to plant base roll to be exactly 0.
+
905// if( shoot_base_rotation.roll/180.f == floor(shoot_base_rotation.roll/180.f) ) {
+
906// roll_nudge = 0.2;
+
907// }
+
908 if( shoot_base_rotation.roll!=0.f || roll_nudge!=0.f ){
+
909 petiole_rotation_axis = rotatePointAboutLine(petiole_rotation_axis, nullorigin, parent_internode_axis,shoot_base_rotation.roll + roll_nudge ); //small additional rotation is to make sure the petiole is not exactly vertical
+
910 internode_axis = rotatePointAboutLine(internode_axis, nullorigin, parent_internode_axis,shoot_base_rotation.roll + roll_nudge );
+
911 }
912
-
913 internode_axis.normalize();
-
914 if( internode_axis==make_vec3(0,0,1) ){
-
915 shoot_bending_axis = make_vec3(0,1,0);
-
916 }
-
917
-
918 // create internode tube
-
919 float dt = 1.f / float(Ndiv_internode_length);
-
920 for(int inode_segment=1; inode_segment <= Ndiv_internode_length; inode_segment++ ){
-
921
-
922 //apply curvature and tortuosity
-
923 if( (fabs(parent_shoot->gravitropic_curvature) > 0 || parent_shoot_parameters.tortuosity.val() > 0 ) && shoot_index.x > 0 ) { //note: curvature is not applied to the first phytomer because if scaling is performed in the phytomer creation function it messes things up
-
924
-
925 float current_curvature_fact = 0.5f-internode_axis.z/2.f;
-
926 if( internode_axis.z<0 ){
-
927 current_curvature_fact *= 2.f;
-
928 }
-
929
-
930 parent_shoot->curvature_perturbation += - 0.5f*parent_shoot->curvature_perturbation*dt + 5*parent_shoot_parameters.tortuosity.val()*context_ptr->randn()*sqrt(dt);
-
931 float curvature_angle = deg2rad((parent_shoot->gravitropic_curvature*current_curvature_fact+parent_shoot->curvature_perturbation) * dr_internode_max);
-
932 internode_axis = rotatePointAboutLine(internode_axis, nullorigin, shoot_bending_axis, curvature_angle);
+
913 vec3 base_pitch_axis = -1*cross(parent_internode_axis, parent_petiole_axis );
+
914
+
915 //internode pitch rotation for shoot base rotation
+
916 if( shoot_base_rotation.pitch!=0.f ) {
+
917 petiole_rotation_axis = rotatePointAboutLine(petiole_rotation_axis, nullorigin, base_pitch_axis, -shoot_base_rotation.pitch);
+
918 internode_axis = rotatePointAboutLine(internode_axis, nullorigin, base_pitch_axis, -shoot_base_rotation.pitch);
+
919 }
+
920
+
921 //internode yaw rotation for shoot base rotation
+
922 if( shoot_base_rotation.yaw!=0 ){
+
923 petiole_rotation_axis = rotatePointAboutLine(petiole_rotation_axis, nullorigin, parent_internode_axis, shoot_base_rotation.yaw);
+
924 internode_axis = rotatePointAboutLine(internode_axis, nullorigin, parent_internode_axis, shoot_base_rotation.yaw );
+
925 }
+
926
+
927 parent_shoot->radial_outward_axis = rotatePointAboutLine(internode_axis, nullorigin, petiole_rotation_axis, 0.5f*M_PI );
+
928
+
929// if( parent_shoot->parent_shoot_ID>=0 ) { //if this is not the first shoot on the plant (i.e. it has a parent shoot
+
930// auto parent_of_parent_shoot = plantarchitecture_ptr->plant_instances.at(plantID).shoot_tree.at(parent_shoot->parent_shoot_ID);
+
931// phytomer_internode_vertices.at(0) += parent_shoot->radial_outward_axis * parent_of_parent_shoot->shoot_internode_radii.at(parent_shoot->parent_node_index).back();
+
932// }
933
-
934 parent_shoot->yaw_perturbation += - 0.5f*parent_shoot->yaw_perturbation*dt + 5*parent_shoot_parameters.tortuosity.val()*context_ptr->randn()*sqrt(dt);
-
935 float yaw_angle = deg2rad((parent_shoot->yaw_perturbation) * dr_internode_max);
-
936 internode_axis = rotatePointAboutLine(internode_axis, nullorigin, make_vec3(0,0,1), yaw_angle);
-
937 }
-
938
-
939 phytomer_internode_vertices.at(inode_segment) = phytomer_internode_vertices.at(inode_segment - 1) + dr_internode * internode_axis;
+
934 }else {
+
935
+
936 //internode pitch rotation for phytomer base
+
937 if ( internode_pitch != 0) {
+
938 internode_axis = rotatePointAboutLine(internode_axis, nullorigin, petiole_rotation_axis,-1.25f*internode_pitch );
+
939 }
940
-
941 phytomer_internode_radii.at(inode_segment) = internode_radius;
-
942 internode_colors.at(inode_segment) = phytomer_parameters.internode.color;
-
943
-
944 }
-
945
-
946 if( shoot_index.x==0 ) { //first phytomer on shoot
-
947 parent_shoot_ptr->shoot_internode_vertices.push_back(phytomer_internode_vertices);
-
948 parent_shoot_ptr->shoot_internode_radii.push_back(phytomer_internode_radii);
-
949 }else{
-
950 parent_shoot_ptr->shoot_internode_vertices.push_back({phytomer_internode_vertices.begin()+1,phytomer_internode_vertices.end()});
-
951 parent_shoot_ptr->shoot_internode_radii.push_back({phytomer_internode_radii.begin()+1,phytomer_internode_radii.end()});
-
952 }
+
941 }
+
942
+
943 vec3 shoot_bending_axis = cross( internode_axis, make_vec3(0,0,1) );
+
944
+
945 internode_axis.normalize();
+
946 if( internode_axis==make_vec3(0,0,1) ){
+
947 shoot_bending_axis = make_vec3(0,1,0);
+
948 }
+
949
+
950 // create internode tube
+
951 float dt = 1.f / float(Ndiv_internode_length);
+
952 for(int inode_segment=1; inode_segment <= Ndiv_internode_length; inode_segment++ ){
953
-
954 //build internode context geometry
-
955 if( build_context_geometry_internode ) {
+
954 //apply curvature and tortuosity
+
955 if( (fabs(parent_shoot->gravitropic_curvature) > 0 || parent_shoot_parameters.tortuosity.val() > 0 ) && shoot_index.x > 0 ) { //note: curvature is not applied to the first phytomer because if scaling is performed in the phytomer creation function it messes things up
956
-
957 //calculate texture coordinates
-
958 float texture_repeat_length = 0.25f; //meters
-
959 float length=0; //shoot length prior to this phytomer
-
960 for(auto & phytomer : parent_shoot_ptr->phytomers){
-
961 length += phytomer->internode_length_max;
-
962 }
-
963 std::vector<float> uv_y(phytomer_internode_vertices.size());
-
964 float dy = internode_length_max/float(uv_y.size()-1);
-
965 for( int j=0; j<uv_y.size(); j++ ){
-
966 uv_y.at(j) = (length+j*dy)/texture_repeat_length - std::floor((length+j*dy)/texture_repeat_length);
-
967 }
-
968
-
969 if( !context_ptr->doesObjectExist(parent_shoot->internode_tube_objID) ){ //first internode on shoot
-
970 if( !phytomer_parameters.internode.image_texture.empty() ){
-
971 parent_shoot->internode_tube_objID = context_ptr->addTubeObject(Ndiv_internode_radius, phytomer_internode_vertices, phytomer_internode_radii, phytomer_parameters.internode.image_texture.c_str(), uv_y);
-
972 }else {
-
973 parent_shoot->internode_tube_objID = context_ptr->addTubeObject(Ndiv_internode_radius, phytomer_internode_vertices, phytomer_internode_radii, internode_colors);
-
974 }
-
975 }else{ //appending internode to shoot
-
976 for (int inode_segment = 1; inode_segment <= Ndiv_internode_length; inode_segment++) {
-
977 if( !phytomer_parameters.internode.image_texture.empty() ) {
-
978 context_ptr->appendTubeSegment(parent_shoot->internode_tube_objID, phytomer_internode_vertices.at(inode_segment), phytomer_internode_radii.at(inode_segment), phytomer_parameters.internode.image_texture.c_str(), {uv_y.at(inode_segment-1), uv_y.at(inode_segment)});
-
979 }else {
-
980 context_ptr->appendTubeSegment(parent_shoot->internode_tube_objID, phytomer_internode_vertices.at(inode_segment), phytomer_internode_radii.at(inode_segment), internode_colors.at(inode_segment));
-
981 }
-
982 }
-
983 }
+
957 float current_curvature_fact = 0.5f-internode_axis.z/2.f;
+
958 if( internode_axis.z<0 ){
+
959 current_curvature_fact *= 2.f;
+
960 }
+
961
+
962 parent_shoot->curvature_perturbation += - 0.5f*parent_shoot->curvature_perturbation*dt + 5*parent_shoot_parameters.tortuosity.val()*context_ptr->randn()*sqrt(dt);
+
963 float curvature_angle = deg2rad((parent_shoot->gravitropic_curvature*current_curvature_fact+parent_shoot->curvature_perturbation) * dr_internode_max);
+
964 internode_axis = rotatePointAboutLine(internode_axis, nullorigin, shoot_bending_axis, curvature_angle);
+
965
+
966 parent_shoot->yaw_perturbation += - 0.5f*parent_shoot->yaw_perturbation*dt + 5*parent_shoot_parameters.tortuosity.val()*context_ptr->randn()*sqrt(dt);
+
967 float yaw_angle = deg2rad((parent_shoot->yaw_perturbation) * dr_internode_max);
+
968 internode_axis = rotatePointAboutLine(internode_axis, nullorigin, make_vec3(0,0,1), yaw_angle);
+
969 }
+
970
+
971 phytomer_internode_vertices.at(inode_segment) = phytomer_internode_vertices.at(inode_segment - 1) + dr_internode * internode_axis;
+
972
+
973 phytomer_internode_radii.at(inode_segment) = internode_radius;
+
974 internode_colors.at(inode_segment) = phytomer_parameters.internode.color;
+
975
+
976 }
+
977
+
978 if( shoot_index.x==0 ) { //first phytomer on shoot
+
979 parent_shoot_ptr->shoot_internode_vertices.push_back(phytomer_internode_vertices);
+
980 parent_shoot_ptr->shoot_internode_radii.push_back(phytomer_internode_radii);
+
981 }else{ //if not the first phytomer on shoot, don't insert the first node because it's already defined on the previous phytomer
+
982 parent_shoot_ptr->shoot_internode_vertices.emplace_back(phytomer_internode_vertices.begin()+1,phytomer_internode_vertices.end());
+
983 parent_shoot_ptr->shoot_internode_radii.emplace_back(phytomer_internode_radii.begin()+1,phytomer_internode_radii.end());
984 }
985
-
986 //--- create petiole ---//
-
987
-
988 vec3 petiole_axis = internode_axis;
-
989
-
990 //petiole pitch rotation
-
991 petiole_pitch = deg2rad(phytomer_parameters.petiole.pitch.val());
-
992 phytomer_parameters.petiole.pitch.resample();
-
993 if( fabs(petiole_pitch)<deg2rad(5.f) ) {
-
994 petiole_pitch = deg2rad(5.f);
-
995 }
-
996 petiole_axis = rotatePointAboutLine(petiole_axis, nullorigin, petiole_rotation_axis, std::abs(petiole_pitch) );
-
997
-
998 //petiole yaw rotation
-
999 if( phytomer_index!=0 && internode_phyllotactic_angle!=0 ){ //not first phytomer along shoot
-
1000 petiole_axis = rotatePointAboutLine(petiole_axis, nullorigin, internode_axis, internode_phyllotactic_angle );
-
1001 petiole_rotation_axis = rotatePointAboutLine(petiole_rotation_axis, nullorigin, internode_axis, internode_phyllotactic_angle );
-
1002 }
-
1003
-
1004 //petiole curvature
-
1005 petiole_curvature = phytomer_parameters.petiole.curvature.val();
-
1006 phytomer_parameters.petiole.curvature.resample();
-
1007
-
1008 for(int petiole=0; petiole < phytomer_parameters.petiole.petioles_per_internode; petiole++ ) { //looping over petioles
-
1009
-
1010 vec3 petiole_rotation_axis_actual = petiole_rotation_axis;
-
1011 vec3 petiole_axis_actual = petiole_axis;
-
1012
-
1013 if( petiole > 0 ) {
-
1014 float budrot = float(petiole) * 2.f * M_PI / float(phytomer_parameters.petiole.petioles_per_internode);
-
1015 petiole_axis_actual = rotatePointAboutLine(petiole_axis_actual, nullorigin, internode_axis, budrot );
-
1016 petiole_rotation_axis_actual = rotatePointAboutLine(petiole_rotation_axis_actual, nullorigin, internode_axis, budrot );
-
1017 }
-
1018
-
1019 petiole_vertices.at(petiole).at(0) = phytomer_internode_vertices.back();
-
1020
-
1021 for (int j = 1; j <= Ndiv_petiole_length; j++) {
-
1022
-
1023 if( fabs(petiole_curvature)>0 ) {
-
1024 petiole_axis_actual = rotatePointAboutLine(petiole_axis_actual, nullorigin, petiole_rotation_axis_actual, -deg2rad(petiole_curvature * dr_petiole_max.at(petiole)));
-
1025 }
-
1026
-
1027 petiole_vertices.at(petiole).at(j) = petiole_vertices.at(petiole).at(j - 1) + dr_petiole.at(petiole) * petiole_axis_actual;
-
1028
-
1029 petiole_radii.at(petiole).at(j) = leaf_scale_factor_fraction * phytomer_parameters.petiole.radius.val() * (1.f - phytomer_parameters.petiole.taper.val() / float(Ndiv_petiole_length) * float(j) );
-
1030 petiole_colors.at(j) = phytomer_parameters.petiole.color;
-
1031
-
1032 }
-
1033
-
1034 if( build_context_geometry_petiole && petiole_radii.at(petiole).front() > 0.f ) {
-
1035 petiole_objIDs.at(petiole) = makeTubeFromCones(Ndiv_petiole_radius, petiole_vertices.at(petiole), petiole_radii.at(petiole), petiole_colors, context_ptr);
-
1036 }
-
1037
-
1038 //--- create buds ---//
+
986 //build internode context geometry
+
987 if( build_context_geometry_internode ) {
+
988
+
989 //calculate texture coordinates
+
990 float texture_repeat_length = 0.25f; //meters
+
991 float length=0; //shoot length prior to this phytomer
+
992 for(auto & phytomer : parent_shoot_ptr->phytomers){
+
993 length += phytomer->internode_length_max;
+
994 }
+
995 std::vector<float> uv_y(phytomer_internode_vertices.size());
+
996 float dy = internode_length_max/float(uv_y.size()-1);
+
997 for( int j=0; j<uv_y.size(); j++ ){
+
998 uv_y.at(j) = (length+j*dy)/texture_repeat_length - std::floor((length+j*dy)/texture_repeat_length);
+
999 }
+
1000
+
1001 if( !context_ptr->doesObjectExist(parent_shoot->internode_tube_objID) ){ //first internode on shoot
+
1002 if( !phytomer_parameters.internode.image_texture.empty() ){
+
1003 parent_shoot->internode_tube_objID = context_ptr->addTubeObject(Ndiv_internode_radius, phytomer_internode_vertices, phytomer_internode_radii, phytomer_parameters.internode.image_texture.c_str(), uv_y);
+
1004 }else {
+
1005 parent_shoot->internode_tube_objID = context_ptr->addTubeObject(Ndiv_internode_radius, phytomer_internode_vertices, phytomer_internode_radii, internode_colors);
+
1006 }
+
1007 }else{ //appending internode to shoot
+
1008 for (int inode_segment = 1; inode_segment <= Ndiv_internode_length; inode_segment++) {
+
1009 if( !phytomer_parameters.internode.image_texture.empty() ) {
+
1010 context_ptr->appendTubeSegment(parent_shoot->internode_tube_objID, phytomer_internode_vertices.at(inode_segment), phytomer_internode_radii.at(inode_segment), phytomer_parameters.internode.image_texture.c_str(), {uv_y.at(inode_segment-1), uv_y.at(inode_segment)});
+
1011 }else {
+
1012 context_ptr->appendTubeSegment(parent_shoot->internode_tube_objID, phytomer_internode_vertices.at(inode_segment), phytomer_internode_radii.at(inode_segment), internode_colors.at(inode_segment));
+
1013 }
+
1014 }
+
1015 }
+
1016 }
+
1017
+
1018 //--- create petiole ---//
+
1019
+
1020 vec3 petiole_axis = internode_axis;
+
1021
+
1022 //petiole pitch rotation
+
1023 petiole_pitch = deg2rad(phytomer_parameters.petiole.pitch.val());
+
1024 phytomer_parameters.petiole.pitch.resample();
+
1025 if( fabs(petiole_pitch)<deg2rad(5.f) ) {
+
1026 petiole_pitch = deg2rad(5.f);
+
1027 }
+
1028 petiole_axis = rotatePointAboutLine(petiole_axis, nullorigin, petiole_rotation_axis, std::abs(petiole_pitch) );
+
1029
+
1030 //petiole yaw rotation
+
1031 if( phytomer_index!=0 && internode_phyllotactic_angle!=0 ){ //not first phytomer along shoot
+
1032 petiole_axis = rotatePointAboutLine(petiole_axis, nullorigin, internode_axis, internode_phyllotactic_angle );
+
1033 petiole_rotation_axis = rotatePointAboutLine(petiole_rotation_axis, nullorigin, internode_axis, internode_phyllotactic_angle );
+
1034 }
+
1035
+
1036 //petiole curvature
+
1037 petiole_curvature = phytomer_parameters.petiole.curvature.val();
+
1038 phytomer_parameters.petiole.curvature.resample();
1039
-
1040 std::vector<VegetativeBud> vegetative_buds_new;
-
1041 vegetative_buds_new.resize( phytomer_parameters.internode.max_vegetative_buds_per_petiole.val() );
-
1042 phytomer_parameters.internode.max_vegetative_buds_per_petiole.resample();
-
1043
-
1044 axillary_vegetative_buds.push_back(vegetative_buds_new);
-
1045
-
1046 std::vector<FloralBud> floral_buds_new;
-
1047 floral_buds_new.resize( phytomer_parameters.internode.max_floral_buds_per_petiole.val() );
-
1048 phytomer_parameters.internode.max_floral_buds_per_petiole.resample();
-
1049
-
1050 uint index = 0;
-
1051 for( auto &fbud : floral_buds_new ){
-
1052 fbud.bud_index = index;
-
1053 fbud.parent_index = petiole;
-
1054 float pitch_adjustment = fbud.bud_index * 0.1f * M_PI / float(axillary_vegetative_buds.size());
-
1055 float yaw_adjustment = -0.25f * M_PI + fbud.bud_index * 0.5f * M_PI / float(axillary_vegetative_buds.size());
-
1056 fbud.base_rotation = make_AxisRotation(pitch_adjustment, yaw_adjustment, 0);
-
1057 fbud.base_position = phytomer_internode_vertices.back();
-
1058 fbud.bending_axis = shoot_bending_axis;
-
1059 index++;
-
1060 }
-
1061
-
1062 floral_buds.push_back(floral_buds_new);
+
1040 for(int petiole=0; petiole < phytomer_parameters.petiole.petioles_per_internode; petiole++ ) { //looping over petioles
+
1041
+
1042 vec3 petiole_rotation_axis_actual = petiole_rotation_axis;
+
1043 vec3 petiole_axis_actual = petiole_axis;
+
1044
+
1045 if( petiole > 0 ) {
+
1046 float budrot = float(petiole) * 2.f * M_PI / float(phytomer_parameters.petiole.petioles_per_internode);
+
1047 petiole_axis_actual = rotatePointAboutLine(petiole_axis_actual, nullorigin, internode_axis, budrot );
+
1048 petiole_rotation_axis_actual = rotatePointAboutLine(petiole_rotation_axis_actual, nullorigin, internode_axis, budrot );
+
1049 }
+
1050
+
1051 petiole_vertices.at(petiole).at(0) = phytomer_internode_vertices.back();
+
1052
+
1053 for (int j = 1; j <= Ndiv_petiole_length; j++) {
+
1054
+
1055 if( fabs(petiole_curvature)>0 ) {
+
1056 petiole_axis_actual = rotatePointAboutLine(petiole_axis_actual, nullorigin, petiole_rotation_axis_actual, -deg2rad(petiole_curvature * dr_petiole_max.at(petiole)));
+
1057 }
+
1058
+
1059 petiole_vertices.at(petiole).at(j) = petiole_vertices.at(petiole).at(j - 1) + dr_petiole.at(petiole) * petiole_axis_actual;
+
1060
+
1061 petiole_radii.at(petiole).at(j) = leaf_scale_factor_fraction * phytomer_parameters.petiole.radius.val() * (1.f - phytomer_parameters.petiole.taper.val() / float(Ndiv_petiole_length) * float(j) );
+
1062 petiole_colors.at(j) = phytomer_parameters.petiole.color;
1063
-
1064 //--- create leaves ---//
+
1064 }
1065
-
1066 if(phytomer_parameters.leaf.prototype_function == nullptr ){
-
1067 helios_runtime_error("ERROR (PlantArchitecture::Phytomer): Leaf prototype function was not defined for shoot type " + parent_shoot->shoot_type_label + ".");
+
1066 if( build_context_geometry_petiole && petiole_radii.at(petiole).front() > 0.f ) {
+
1067 petiole_objIDs.at(petiole) = makeTubeFromCones(Ndiv_petiole_radius, petiole_vertices.at(petiole), petiole_radii.at(petiole), petiole_colors, context_ptr);
1068 }
1069
-
1070 vec3 petiole_tip_axis = getPetioleAxisVector(1.f, petiole);
+
1070 //--- create buds ---//
1071
-
1072 vec3 leaf_rotation_axis = cross(internode_axis, petiole_tip_axis );
-
1073
-
1074 // Create unique leaf prototypes for each shoot type so we can simply copy them for each leaf
-
1075 if( phytomer_parameters.leaf.unique_prototypes>0 && plantarchitecture_ptr->unique_leaf_prototype_objIDs.find(parent_shoot->shoot_type_label) == plantarchitecture_ptr->unique_leaf_prototype_objIDs.end() ) {
-
1076 plantarchitecture_ptr->unique_leaf_prototype_objIDs[parent_shoot->shoot_type_label].resize(phytomer_parameters.leaf.unique_prototypes);
-
1077 for( int prototype = 0; prototype < phytomer_parameters.leaf.unique_prototypes; prototype++ ) {
-
1078 for (int leaf = 0; leaf < leaves_per_petiole; leaf++) {
-
1079 float ind_from_tip = float(leaf) - float(leaves_per_petiole - 1) / 2.f;
-
1080 uint objID_leaf = phytomer_parameters.leaf.prototype_function(context_ptr, phytomer_parameters.leaf.subdivisions, ind_from_tip);
-
1081 plantarchitecture_ptr->unique_leaf_prototype_objIDs.at(parent_shoot->shoot_type_label).at(prototype).push_back(objID_leaf);
-
1082 std::vector<uint> petiolule_UUIDs = context_ptr->filterPrimitivesByData( context_ptr->getObjectPrimitiveUUIDs(objID_leaf), "object_label", "petiolule" );
-
1083 context_ptr->setPrimitiveColor( petiolule_UUIDs, phytomer_parameters.petiole.color );
-
1084 context_ptr->hideObject({objID_leaf});
-
1085 }
-
1086 }
-
1087 }
-
1088
-
1089 for(int leaf=0; leaf < leaves_per_petiole; leaf++ ){
-
1090
-
1091 float ind_from_tip = float(leaf)-float(leaves_per_petiole-1)/2.f;
-
1092
-
1093 uint objID_leaf;
-
1094 if( phytomer_parameters.leaf.unique_prototypes>0 ) { //copy the existing prototype
-
1095 int prototype = context_ptr->randu(0, phytomer_parameters.leaf.unique_prototypes - 1);
-
1096 objID_leaf = context_ptr->copyObject(plantarchitecture_ptr->unique_leaf_prototype_objIDs.at(parent_shoot->shoot_type_label).at(prototype).at(leaf));
-
1097 }else{ //load a new prototype
-
1098 objID_leaf = phytomer_parameters.leaf.prototype_function(context_ptr, phytomer_parameters.leaf.subdivisions, ind_from_tip);
-
1099 }
-
1100
-
1101 // -- leaf scaling -- //
-
1102
-
1103 if( leaves_per_petiole>0 && phytomer_parameters.leaf.leaflet_scale.val()!=1.f && ind_from_tip!=0 ){
-
1104 leaf_size_max.at(petiole).at(leaf) = powf(phytomer_parameters.leaf.leaflet_scale.val(),fabs(ind_from_tip))*phytomer_parameters.leaf.prototype_scale.val();
-
1105 }else{
-
1106 leaf_size_max.at(petiole).at(leaf) = phytomer_parameters.leaf.prototype_scale.val();
-
1107 }
-
1108 vec3 leaf_scale = leaf_scale_factor_fraction * leaf_size_max.at(petiole).at(leaf) * make_vec3(1,1,1);
-
1109
-
1110 context_ptr->scaleObject( objID_leaf, leaf_scale );
-
1111
-
1112 float compound_rotation = 0;
-
1113 if( leaves_per_petiole>1 ) {
-
1114 if (phytomer_parameters.leaf.leaflet_offset.val() == 0) {
-
1115 float dphi = M_PI / (floor(0.5 * float(leaves_per_petiole - 1)) + 1);
-
1116 compound_rotation = -float(M_PI) + dphi * (leaf + 0.5f);
-
1117 } else {
-
1118 if( leaf == float(leaves_per_petiole-1)/2.f ){ //tip leaf
-
1119 compound_rotation = 0;
-
1120 }else if( leaf < float(leaves_per_petiole-1)/2.f ) {
-
1121 compound_rotation = -0.5*M_PI;
-
1122 }else{
-
1123 compound_rotation = 0.5*M_PI;
-
1124 }
-
1125 }
-
1126 }
-
1127
-
1128 // -- leaf rotations -- //
-
1129
-
1130 //leaf roll rotation
-
1131 float roll_rot = 0;
-
1132 if( leaves_per_petiole==1 ){
-
1133 int sign = (shoot_index.x%2==0) ? 1 : -1;
-
1134 roll_rot = (acos_safe(internode_axis.z)-deg2rad(phytomer_parameters.leaf.roll.val()))*sign;
-
1135 } else if( ind_from_tip!= 0){
-
1136 roll_rot = (asin_safe(petiole_tip_axis.z)+deg2rad(phytomer_parameters.leaf.roll.val()))*compound_rotation/std::fabs(compound_rotation);
-
1137 }
-
1138 leaf_rotation.at(petiole).at(leaf).roll = deg2rad(phytomer_parameters.leaf.roll.val());
-
1139 phytomer_parameters.leaf.roll.resample();
-
1140 context_ptr->rotateObject(objID_leaf, roll_rot, "x" );
+
1072 std::vector<VegetativeBud> vegetative_buds_new;
+
1073 vegetative_buds_new.resize( phytomer_parameters.internode.max_vegetative_buds_per_petiole.val() );
+
1074 phytomer_parameters.internode.max_vegetative_buds_per_petiole.resample();
+
1075
+
1076 axillary_vegetative_buds.push_back(vegetative_buds_new);
+
1077
+
1078 std::vector<FloralBud> floral_buds_new;
+
1079 floral_buds_new.resize( phytomer_parameters.internode.max_floral_buds_per_petiole.val() );
+
1080 phytomer_parameters.internode.max_floral_buds_per_petiole.resample();
+
1081
+
1082 uint index = 0;
+
1083 for( auto &fbud : floral_buds_new ){
+
1084 fbud.bud_index = index;
+
1085 fbud.parent_index = petiole;
+
1086 float pitch_adjustment = fbud.bud_index * 0.1f * M_PI / float(axillary_vegetative_buds.size());
+
1087 float yaw_adjustment = -0.25f * M_PI + fbud.bud_index * 0.5f * M_PI / float(axillary_vegetative_buds.size());
+
1088 fbud.base_rotation = make_AxisRotation(pitch_adjustment, yaw_adjustment, 0);
+
1089 fbud.base_position = phytomer_internode_vertices.back();
+
1090 fbud.bending_axis = shoot_bending_axis;
+
1091 index++;
+
1092 }
+
1093
+
1094 floral_buds.push_back(floral_buds_new);
+
1095
+
1096 //--- create leaves ---//
+
1097
+
1098 if(phytomer_parameters.leaf.prototype_function == nullptr ){
+
1099 helios_runtime_error("ERROR (PlantArchitecture::Phytomer): Leaf prototype function was not defined for shoot type " + parent_shoot->shoot_type_label + ".");
+
1100 }
+
1101
+
1102 vec3 petiole_tip_axis = getPetioleAxisVector(1.f, petiole);
+
1103
+
1104 vec3 leaf_rotation_axis = cross(internode_axis, petiole_tip_axis );
+
1105
+
1106 // Create unique leaf prototypes for each shoot type so we can simply copy them for each leaf
+
1107 if( phytomer_parameters.leaf.unique_prototypes>0 && plantarchitecture_ptr->unique_leaf_prototype_objIDs.find(parent_shoot->shoot_type_label) == plantarchitecture_ptr->unique_leaf_prototype_objIDs.end() ) {
+
1108 plantarchitecture_ptr->unique_leaf_prototype_objIDs[parent_shoot->shoot_type_label].resize(phytomer_parameters.leaf.unique_prototypes);
+
1109 for( int prototype = 0; prototype < phytomer_parameters.leaf.unique_prototypes; prototype++ ) {
+
1110 for (int leaf = 0; leaf < leaves_per_petiole; leaf++) {
+
1111 float ind_from_tip = float(leaf) - float(leaves_per_petiole - 1) / 2.f;
+
1112 uint objID_leaf = phytomer_parameters.leaf.prototype_function(context_ptr, phytomer_parameters.leaf.subdivisions, ind_from_tip);
+
1113 plantarchitecture_ptr->unique_leaf_prototype_objIDs.at(parent_shoot->shoot_type_label).at(prototype).push_back(objID_leaf);
+
1114 std::vector<uint> petiolule_UUIDs = context_ptr->filterPrimitivesByData( context_ptr->getObjectPrimitiveUUIDs(objID_leaf), "object_label", "petiolule" );
+
1115 context_ptr->setPrimitiveColor( petiolule_UUIDs, phytomer_parameters.petiole.color );
+
1116 context_ptr->hideObject({objID_leaf});
+
1117 }
+
1118 }
+
1119 }
+
1120
+
1121 for(int leaf=0; leaf < leaves_per_petiole; leaf++ ){
+
1122
+
1123 float ind_from_tip = float(leaf)-float(leaves_per_petiole-1)/2.f;
+
1124
+
1125 uint objID_leaf;
+
1126 if( phytomer_parameters.leaf.unique_prototypes>0 ) { //copy the existing prototype
+
1127 int prototype = context_ptr->randu(0, phytomer_parameters.leaf.unique_prototypes - 1);
+
1128 objID_leaf = context_ptr->copyObject(plantarchitecture_ptr->unique_leaf_prototype_objIDs.at(parent_shoot->shoot_type_label).at(prototype).at(leaf));
+
1129 }else{ //load a new prototype
+
1130 objID_leaf = phytomer_parameters.leaf.prototype_function(context_ptr, phytomer_parameters.leaf.subdivisions, ind_from_tip);
+
1131 }
+
1132
+
1133 // -- leaf scaling -- //
+
1134
+
1135 if( leaves_per_petiole>0 && phytomer_parameters.leaf.leaflet_scale.val()!=1.f && ind_from_tip!=0 ){
+
1136 leaf_size_max.at(petiole).at(leaf) = powf(phytomer_parameters.leaf.leaflet_scale.val(),fabs(ind_from_tip))*phytomer_parameters.leaf.prototype_scale.val();
+
1137 }else{
+
1138 leaf_size_max.at(petiole).at(leaf) = phytomer_parameters.leaf.prototype_scale.val();
+
1139 }
+
1140 vec3 leaf_scale = leaf_scale_factor_fraction * leaf_size_max.at(petiole).at(leaf) * make_vec3(1,1,1);
1141
-
1142 //leaf pitch rotation
-
1143 leaf_rotation.at(petiole).at(leaf).pitch = deg2rad(phytomer_parameters.leaf.pitch.val());
-
1144 float pitch_rot = leaf_rotation.at(petiole).at(leaf).pitch;
-
1145 phytomer_parameters.leaf.pitch.resample();
-
1146 if( ind_from_tip==0 ){
-
1147 pitch_rot += asin_safe(petiole_tip_axis.z);
-
1148 }
-
1149 context_ptr->rotateObject(objID_leaf, -pitch_rot , "y" );
-
1150
-
1151 //leaf yaw rotation
-
1152 if( ind_from_tip!=0 ){
-
1153 float sign = -compound_rotation/fabs(compound_rotation);
-
1154 leaf_rotation.at(petiole).at(leaf).yaw = sign*deg2rad(phytomer_parameters.leaf.yaw.val());
-
1155 float yaw_rot = leaf_rotation.at(petiole).at(leaf).yaw;
-
1156 phytomer_parameters.leaf.yaw.resample();
-
1157 context_ptr->rotateObject( objID_leaf, yaw_rot, "z" );
-
1158 }else{
-
1159 leaf_rotation.at(petiole).at(leaf).yaw = 0;
-
1160 }
+
1142 context_ptr->scaleObject( objID_leaf, leaf_scale );
+
1143
+
1144 float compound_rotation = 0;
+
1145 if( leaves_per_petiole>1 ) {
+
1146 if (phytomer_parameters.leaf.leaflet_offset.val() == 0) {
+
1147 float dphi = M_PI / (floor(0.5 * float(leaves_per_petiole - 1)) + 1);
+
1148 compound_rotation = -float(M_PI) + dphi * (leaf + 0.5f);
+
1149 } else {
+
1150 if( leaf == float(leaves_per_petiole-1)/2.f ){ //tip leaf
+
1151 compound_rotation = 0;
+
1152 }else if( leaf < float(leaves_per_petiole-1)/2.f ) {
+
1153 compound_rotation = -0.5*M_PI;
+
1154 }else{
+
1155 compound_rotation = 0.5*M_PI;
+
1156 }
+
1157 }
+
1158 }
+
1159
+
1160 // -- leaf rotations -- //
1161
-
1162 //rotate leaf to azimuth of petiole
-
1163 context_ptr->rotateObject( objID_leaf, -std::atan2(petiole_tip_axis.y, petiole_tip_axis.x)+compound_rotation, "z" );
-
1164
-
1165
-
1166 // -- leaf translation -- //
-
1167
-
1168 vec3 leaf_base = petiole_vertices.at(petiole).back();
-
1169 if( leaves_per_petiole>1 && phytomer_parameters.leaf.leaflet_offset.val()>0 ){
-
1170 if( ind_from_tip != 0 ) {
-
1171 float offset = (fabs(ind_from_tip) - 0.5f) * phytomer_parameters.leaf.leaflet_offset.val() * phytomer_parameters.petiole.length.val();
-
1172 leaf_base = interpolateTube(petiole_vertices.at(petiole), 1.f - offset / phytomer_parameters.petiole.length.val() );
-
1173 }
-
1174 }
-
1175
-
1176 context_ptr->translateObject( objID_leaf, leaf_base );
-
1177
-
1178 leaf_objIDs.at(petiole).push_back(objID_leaf );
-
1179 leaf_bases.at(petiole).push_back(leaf_base );
-
1180
-
1181 }
-
1182 phytomer_parameters.leaf.prototype_scale.resample();
-
1183
-
1184 if( petiole_axis_actual==make_vec3(0,0,1) ) {
-
1185 inflorescence_bending_axis = make_vec3(1, 0, 0);
-
1186 }else{
-
1187 inflorescence_bending_axis = cross(make_vec3(0, 0, 1), petiole_axis_actual);
-
1188 }
-
1189
-
1190 }
-
1191
-
1192}
+
1162 //leaf roll rotation
+
1163 float roll_rot = 0;
+
1164 if( leaves_per_petiole==1 ){
+
1165 int sign = (shoot_index.x%2==0) ? 1 : -1;
+
1166 roll_rot = (acos_safe(internode_axis.z)-deg2rad(phytomer_parameters.leaf.roll.val()))*sign;
+
1167 } else if( ind_from_tip!= 0){
+
1168 roll_rot = (asin_safe(petiole_tip_axis.z)+deg2rad(phytomer_parameters.leaf.roll.val()))*compound_rotation/std::fabs(compound_rotation);
+
1169 }
+
1170 leaf_rotation.at(petiole).at(leaf).roll = deg2rad(phytomer_parameters.leaf.roll.val());
+
1171 phytomer_parameters.leaf.roll.resample();
+
1172 context_ptr->rotateObject(objID_leaf, roll_rot, "x" );
+
1173
+
1174 //leaf pitch rotation
+
1175 leaf_rotation.at(petiole).at(leaf).pitch = deg2rad(phytomer_parameters.leaf.pitch.val());
+
1176 float pitch_rot = leaf_rotation.at(petiole).at(leaf).pitch;
+
1177 phytomer_parameters.leaf.pitch.resample();
+
1178 if( ind_from_tip==0 ){
+
1179 pitch_rot += asin_safe(petiole_tip_axis.z);
+
1180 }
+
1181 context_ptr->rotateObject(objID_leaf, -pitch_rot , "y" );
+
1182
+
1183 //leaf yaw rotation
+
1184 if( ind_from_tip!=0 ){
+
1185 float sign = -compound_rotation/fabs(compound_rotation);
+
1186 leaf_rotation.at(petiole).at(leaf).yaw = sign*deg2rad(phytomer_parameters.leaf.yaw.val());
+
1187 float yaw_rot = leaf_rotation.at(petiole).at(leaf).yaw;
+
1188 phytomer_parameters.leaf.yaw.resample();
+
1189 context_ptr->rotateObject( objID_leaf, yaw_rot, "z" );
+
1190 }else{
+
1191 leaf_rotation.at(petiole).at(leaf).yaw = 0;
+
1192 }
1193
-
1194void Phytomer::updateInflorescence(FloralBud &fbud) {
-
1195
-
1196 bool build_context_geometry_peduncle = plantarchitecture_ptr->build_context_geometry_peduncle;
+
1194 //rotate leaf to azimuth of petiole
+
1195 context_ptr->rotateObject( objID_leaf, -std::atan2(petiole_tip_axis.y, petiole_tip_axis.x)+compound_rotation, "z" );
+
1196
1197
-
1198 uint Ndiv_peduncle_length = std::max(uint(1), phytomer_parameters.peduncle.length_segments);
-
1199 uint Ndiv_peduncle_radius = std::max(uint(3), phytomer_parameters.peduncle.radial_subdivisions);
-
1200 if( phytomer_parameters.peduncle.length_segments==0 || phytomer_parameters.peduncle.radial_subdivisions<3 ){
-
1201 build_context_geometry_peduncle = false;
-
1202 }
-
1203
-
1204 float dr_peduncle = phytomer_parameters.peduncle.length.val() / float(Ndiv_peduncle_length);
-
1205 phytomer_parameters.peduncle.length.resample();
-
1206
-
1207 std::vector<vec3> peduncle_vertices(phytomer_parameters.peduncle.length_segments + 1);
-
1208 peduncle_vertices.at(0) = fbud.base_position;
-
1209 std::vector<float> peduncle_radii(phytomer_parameters.peduncle.length_segments + 1);
-
1210 peduncle_radii.at(0) = phytomer_parameters.peduncle.radius.val();
-
1211 std::vector<RGBcolor> peduncle_colors(phytomer_parameters.peduncle.length_segments + 1);
-
1212 peduncle_colors.at(0) = phytomer_parameters.internode.color;
-
1213
-
1214 vec3 peduncle_axis = getAxisVector(1.f, getInternodeNodePositions() );
+
1198 // -- leaf translation -- //
+
1199
+
1200 vec3 leaf_base = petiole_vertices.at(petiole).back();
+
1201 if( leaves_per_petiole>1 && phytomer_parameters.leaf.leaflet_offset.val()>0 ){
+
1202 if( ind_from_tip != 0 ) {
+
1203 float offset = (fabs(ind_from_tip) - 0.5f) * phytomer_parameters.leaf.leaflet_offset.val() * phytomer_parameters.petiole.length.val();
+
1204 leaf_base = interpolateTube(petiole_vertices.at(petiole), 1.f - offset / phytomer_parameters.petiole.length.val() );
+
1205 }
+
1206 }
+
1207
+
1208 context_ptr->translateObject( objID_leaf, leaf_base );
+
1209
+
1210 leaf_objIDs.at(petiole).push_back(objID_leaf );
+
1211 leaf_bases.at(petiole).push_back(leaf_base );
+
1212
+
1213 }
+
1214 phytomer_parameters.leaf.prototype_scale.resample();
1215
-
1216 //peduncle pitch rotation
-
1217 if( phytomer_parameters.peduncle.pitch.val()!=0.f || fbud.base_rotation.pitch!=0.f ) {
-
1218 peduncle_axis = rotatePointAboutLine(peduncle_axis, nullorigin, inflorescence_bending_axis, deg2rad(phytomer_parameters.peduncle.pitch.val())+fbud.base_rotation.pitch );
-
1219 phytomer_parameters.peduncle.pitch.resample();
-
1220 }
+
1216 if( petiole_axis_actual==make_vec3(0,0,1) ) {
+
1217 inflorescence_bending_axis = make_vec3(1, 0, 0);
+
1218 }else{
+
1219 inflorescence_bending_axis = cross(make_vec3(0, 0, 1), petiole_axis_actual);
+
1220 }
1221
-
1222 //rotate peduncle to azimuth of petiole and apply peduncle base yaw rotation
-
1223 vec3 internode_axis = getAxisVector(1.f, getInternodeNodePositions() );
-
1224 vec3 parent_petiole_base_axis = getPetioleAxisVector(0.f, fbud.parent_index);
-
1225 float parent_petiole_azimuth = -std::atan2(parent_petiole_base_axis.y, parent_petiole_base_axis.x);
-
1226 float current_peduncle_azimuth = -std::atan2(peduncle_axis.y, peduncle_axis.x);
-
1227 peduncle_axis = rotatePointAboutLine( peduncle_axis, nullorigin, internode_axis, (current_peduncle_azimuth-parent_petiole_azimuth) + fbud.base_rotation.yaw );
-
1228
-
1229 float theta_base = fabs(cart2sphere(peduncle_axis).zenith);
-
1230
-
1231 for(int i=1; i<=phytomer_parameters.peduncle.length_segments; i++ ){
-
1232
-
1233 if( phytomer_parameters.peduncle.curvature.val()!=0.f ) {
-
1234 float theta_curvature = -deg2rad(phytomer_parameters.peduncle.curvature.val() * dr_peduncle);
-
1235 phytomer_parameters.peduncle.curvature.resample();
-
1236 if (fabs(theta_curvature) * float(i) < M_PI - theta_base) {
-
1237 peduncle_axis = rotatePointAboutLine(peduncle_axis, nullorigin, inflorescence_bending_axis, theta_curvature);
-
1238 } else {
-
1239 peduncle_axis = make_vec3(0, 0, -1);
-
1240 }
-
1241 }
-
1242
-
1243 peduncle_vertices.at(i) = peduncle_vertices.at(i - 1) + dr_peduncle * peduncle_axis;
-
1244
-
1245 peduncle_radii.at(i) = phytomer_parameters.peduncle.radius.val();
-
1246 peduncle_colors.at(i) = phytomer_parameters.peduncle.color;
+
1222 }
+
1223
+
1224}
+
1225
+
1226void Phytomer::updateInflorescence(FloralBud &fbud) {
+
1227
+
1228 bool build_context_geometry_peduncle = plantarchitecture_ptr->build_context_geometry_peduncle;
+
1229
+
1230 uint Ndiv_peduncle_length = std::max(uint(1), phytomer_parameters.peduncle.length_segments);
+
1231 uint Ndiv_peduncle_radius = std::max(uint(3), phytomer_parameters.peduncle.radial_subdivisions);
+
1232 if( phytomer_parameters.peduncle.length_segments==0 || phytomer_parameters.peduncle.radial_subdivisions<3 ){
+
1233 build_context_geometry_peduncle = false;
+
1234 }
+
1235
+
1236 float dr_peduncle = phytomer_parameters.peduncle.length.val() / float(Ndiv_peduncle_length);
+
1237 phytomer_parameters.peduncle.length.resample();
+
1238
+
1239 std::vector<vec3> peduncle_vertices(phytomer_parameters.peduncle.length_segments + 1);
+
1240 peduncle_vertices.at(0) = fbud.base_position;
+
1241 std::vector<float> peduncle_radii(phytomer_parameters.peduncle.length_segments + 1);
+
1242 peduncle_radii.at(0) = phytomer_parameters.peduncle.radius.val();
+
1243 std::vector<RGBcolor> peduncle_colors(phytomer_parameters.peduncle.length_segments + 1);
+
1244 peduncle_colors.at(0) = phytomer_parameters.peduncle.color;
+
1245
+
1246 vec3 peduncle_axis = getAxisVector(1.f, getInternodeNodePositions() );
1247
-
1248 }
-
1249 phytomer_parameters.peduncle.radius.resample();
-
1250
-
1251 if( build_context_geometry_peduncle) {
-
1252 fbud.peduncle_objIDs.push_back(context_ptr->addTubeObject(Ndiv_peduncle_radius, peduncle_vertices, peduncle_radii, peduncle_colors));
-
1253 }
-
1254
-
1255 // Create unique inflorescence prototypes for each shoot type so we can simply copy them for each leaf
-
1256 std::string parent_shoot_type_label = plantarchitecture_ptr->plant_instances.at(this->plantID).shoot_tree.at(parent_shoot_ID)->shoot_type_label;
-
1257 if( phytomer_parameters.inflorescence.unique_prototypes>0 ){
-
1258 //closed flowers
-
1259 if( phytomer_parameters.inflorescence.flower_prototype_function!= nullptr && plantarchitecture_ptr->unique_closed_flower_prototype_objIDs.find(parent_shoot_type_label) == plantarchitecture_ptr->unique_closed_flower_prototype_objIDs.end() ) {
-
1260 plantarchitecture_ptr->unique_closed_flower_prototype_objIDs[parent_shoot_type_label].resize(phytomer_parameters.inflorescence.unique_prototypes);
-
1261 for( int prototype = 0; prototype < phytomer_parameters.inflorescence.unique_prototypes; prototype++ ) {
-
1262 uint objID_flower = phytomer_parameters.inflorescence.flower_prototype_function(context_ptr, 1, false);
-
1263 plantarchitecture_ptr->unique_closed_flower_prototype_objIDs.at(parent_shoot_type_label).at(prototype) = objID_flower;
-
1264 context_ptr->hideObject({objID_flower});
-
1265 }
-
1266 }
-
1267 //open flowers
-
1268 if( phytomer_parameters.inflorescence.flower_prototype_function!= nullptr && plantarchitecture_ptr->unique_open_flower_prototype_objIDs.find(parent_shoot_type_label) == plantarchitecture_ptr->unique_open_flower_prototype_objIDs.end() ) {
-
1269 plantarchitecture_ptr->unique_open_flower_prototype_objIDs[parent_shoot_type_label].resize(phytomer_parameters.inflorescence.unique_prototypes);
-
1270 for( int prototype = 0; prototype < phytomer_parameters.inflorescence.unique_prototypes; prototype++ ) {
-
1271 uint objID_flower = phytomer_parameters.inflorescence.flower_prototype_function(context_ptr, 1, false);
-
1272 plantarchitecture_ptr->unique_open_flower_prototype_objIDs.at(parent_shoot_type_label).at(prototype) = objID_flower;
-
1273 context_ptr->hideObject({objID_flower});
-
1274 }
-
1275 }
-
1276 //fruit
-
1277 if( phytomer_parameters.inflorescence.fruit_prototype_function!= nullptr && plantarchitecture_ptr->unique_fruit_prototype_objIDs.find(parent_shoot_type_label) == plantarchitecture_ptr->unique_fruit_prototype_objIDs.end() ) {
-
1278 plantarchitecture_ptr->unique_fruit_prototype_objIDs[parent_shoot_type_label].resize(phytomer_parameters.inflorescence.unique_prototypes);
-
1279 for( int prototype = 0; prototype < phytomer_parameters.inflorescence.unique_prototypes; prototype++ ) {
-
1280 uint objID_fruit = phytomer_parameters.inflorescence.fruit_prototype_function(context_ptr, 1, false);
-
1281 plantarchitecture_ptr->unique_fruit_prototype_objIDs.at(parent_shoot_type_label).at(prototype) = objID_fruit;
-
1282 context_ptr->hideObject({objID_fruit});
-
1283 }
-
1284 }
+
1248 //peduncle pitch rotation
+
1249 if( phytomer_parameters.peduncle.pitch.val()!=0.f || fbud.base_rotation.pitch!=0.f ) {
+
1250 peduncle_axis = rotatePointAboutLine(peduncle_axis, nullorigin, inflorescence_bending_axis, deg2rad(phytomer_parameters.peduncle.pitch.val())+fbud.base_rotation.pitch );
+
1251 phytomer_parameters.peduncle.pitch.resample();
+
1252 }
+
1253
+
1254 //rotate peduncle to azimuth of petiole and apply peduncle base yaw rotation
+
1255 vec3 internode_axis = getAxisVector(1.f, getInternodeNodePositions() );
+
1256 vec3 parent_petiole_base_axis = getPetioleAxisVector(0.f, fbud.parent_index);
+
1257 float parent_petiole_azimuth = -std::atan2(parent_petiole_base_axis.y, parent_petiole_base_axis.x);
+
1258 float current_peduncle_azimuth = -std::atan2(peduncle_axis.y, peduncle_axis.x);
+
1259 peduncle_axis = rotatePointAboutLine( peduncle_axis, nullorigin, internode_axis, (current_peduncle_azimuth-parent_petiole_azimuth) + fbud.base_rotation.yaw );
+
1260
+
1261 float theta_base = fabs(cart2sphere(peduncle_axis).zenith);
+
1262
+
1263 for(int i=1; i<=phytomer_parameters.peduncle.length_segments; i++ ){
+
1264
+
1265 if( phytomer_parameters.peduncle.curvature.val()!=0.f ) {
+
1266 float theta_curvature = -deg2rad(phytomer_parameters.peduncle.curvature.val() * dr_peduncle);
+
1267 phytomer_parameters.peduncle.curvature.resample();
+
1268 if (fabs(theta_curvature) * float(i) < M_PI - theta_base) {
+
1269 peduncle_axis = rotatePointAboutLine(peduncle_axis, nullorigin, inflorescence_bending_axis, theta_curvature);
+
1270 } else {
+
1271 peduncle_axis = make_vec3(0, 0, -1);
+
1272 }
+
1273 }
+
1274
+
1275 peduncle_vertices.at(i) = peduncle_vertices.at(i - 1) + dr_peduncle * peduncle_axis;
+
1276
+
1277 peduncle_radii.at(i) = phytomer_parameters.peduncle.radius.val();
+
1278 peduncle_colors.at(i) = phytomer_parameters.peduncle.color;
+
1279
+
1280 }
+
1281 phytomer_parameters.peduncle.radius.resample();
+
1282
+
1283 if( build_context_geometry_peduncle) {
+
1284 fbud.peduncle_objIDs.push_back(context_ptr->addTubeObject(Ndiv_peduncle_radius, peduncle_vertices, peduncle_radii, peduncle_colors));
1285 }
1286
-
1287 for(int fruit=0; fruit < phytomer_parameters.inflorescence.flowers_per_rachis.val(); fruit++ ){
-
1288
-
1289 uint objID_fruit;
-
1290 helios::vec3 fruit_scale;
-
1291
-
1292 if(fbud.state == BUD_FRUITING ){
-
1293 if( phytomer_parameters.inflorescence.unique_prototypes>0 ) { //copy existing prototype
-
1294 int prototype = context_ptr->randu(0, int(phytomer_parameters.inflorescence.unique_prototypes - 1));
-
1295 objID_fruit = context_ptr->copyObject(plantarchitecture_ptr->unique_fruit_prototype_objIDs.at(parent_shoot_type_label).at(prototype));
-
1296 }else{ //load new prototype
-
1297 objID_fruit = phytomer_parameters.inflorescence.fruit_prototype_function(context_ptr, 1, fbud.time_counter);
-
1298 }
-
1299 fruit_scale = phytomer_parameters.inflorescence.fruit_prototype_scale.val()*make_vec3(1,1,1);
-
1300 phytomer_parameters.inflorescence.fruit_prototype_scale.resample();
-
1301 }else{
-
1302 bool flower_is_open;
-
1303 if(fbud.state == BUD_FLOWER_CLOSED ) {
-
1304 flower_is_open = false;
-
1305 if( phytomer_parameters.inflorescence.unique_prototypes>0 ) { //copy existing prototype
-
1306 int prototype = context_ptr->randu(0, int(phytomer_parameters.inflorescence.unique_prototypes - 1));
-
1307 objID_fruit = context_ptr->copyObject(plantarchitecture_ptr->unique_closed_flower_prototype_objIDs.at(parent_shoot_type_label).at(prototype));
-
1308 }else{ //load new prototype
-
1309 objID_fruit = phytomer_parameters.inflorescence.flower_prototype_function(context_ptr, 1, flower_is_open);
-
1310 }
-
1311 }else{
-
1312 flower_is_open = true;
-
1313 if( phytomer_parameters.inflorescence.unique_prototypes>0 ) { //copy existing prototype
-
1314 int prototype = context_ptr->randu(0, int(phytomer_parameters.inflorescence.unique_prototypes - 1));
-
1315 objID_fruit = context_ptr->copyObject(plantarchitecture_ptr->unique_open_flower_prototype_objIDs.at(parent_shoot_type_label).at(prototype));
-
1316 }else{ //load new prototype
-
1317 objID_fruit = phytomer_parameters.inflorescence.flower_prototype_function(context_ptr, 1, flower_is_open);
-
1318 }
-
1319 }
-
1320 fruit_scale = phytomer_parameters.inflorescence.flower_prototype_scale.val()*make_vec3(1,1,1);
-
1321 phytomer_parameters.inflorescence.flower_prototype_scale.resample();
-
1322 }
+
1287 // Create unique inflorescence prototypes for each shoot type so we can simply copy them for each leaf
+
1288 std::string parent_shoot_type_label = plantarchitecture_ptr->plant_instances.at(this->plantID).shoot_tree.at(parent_shoot_ID)->shoot_type_label;
+
1289 if( phytomer_parameters.inflorescence.unique_prototypes>0 ){
+
1290 //closed flowers
+
1291 if( phytomer_parameters.inflorescence.flower_prototype_function!= nullptr && plantarchitecture_ptr->unique_closed_flower_prototype_objIDs.find(parent_shoot_type_label) == plantarchitecture_ptr->unique_closed_flower_prototype_objIDs.end() ) {
+
1292 plantarchitecture_ptr->unique_closed_flower_prototype_objIDs[parent_shoot_type_label].resize(phytomer_parameters.inflorescence.unique_prototypes);
+
1293 for( int prototype = 0; prototype < phytomer_parameters.inflorescence.unique_prototypes; prototype++ ) {
+
1294 uint objID_flower = phytomer_parameters.inflorescence.flower_prototype_function(context_ptr, 1, false);
+
1295 plantarchitecture_ptr->unique_closed_flower_prototype_objIDs.at(parent_shoot_type_label).at(prototype) = objID_flower;
+
1296 context_ptr->hideObject({objID_flower});
+
1297 }
+
1298 }
+
1299 //open flowers
+
1300 if( phytomer_parameters.inflorescence.flower_prototype_function!= nullptr && plantarchitecture_ptr->unique_open_flower_prototype_objIDs.find(parent_shoot_type_label) == plantarchitecture_ptr->unique_open_flower_prototype_objIDs.end() ) {
+
1301 plantarchitecture_ptr->unique_open_flower_prototype_objIDs[parent_shoot_type_label].resize(phytomer_parameters.inflorescence.unique_prototypes);
+
1302 for( int prototype = 0; prototype < phytomer_parameters.inflorescence.unique_prototypes; prototype++ ) {
+
1303 uint objID_flower = phytomer_parameters.inflorescence.flower_prototype_function(context_ptr, 1, false);
+
1304 plantarchitecture_ptr->unique_open_flower_prototype_objIDs.at(parent_shoot_type_label).at(prototype) = objID_flower;
+
1305 context_ptr->hideObject({objID_flower});
+
1306 }
+
1307 }
+
1308 //fruit
+
1309 if( phytomer_parameters.inflorescence.fruit_prototype_function!= nullptr && plantarchitecture_ptr->unique_fruit_prototype_objIDs.find(parent_shoot_type_label) == plantarchitecture_ptr->unique_fruit_prototype_objIDs.end() ) {
+
1310 plantarchitecture_ptr->unique_fruit_prototype_objIDs[parent_shoot_type_label].resize(phytomer_parameters.inflorescence.unique_prototypes);
+
1311 for( int prototype = 0; prototype < phytomer_parameters.inflorescence.unique_prototypes; prototype++ ) {
+
1312 uint objID_fruit = phytomer_parameters.inflorescence.fruit_prototype_function(context_ptr, 1, false);
+
1313 plantarchitecture_ptr->unique_fruit_prototype_objIDs.at(parent_shoot_type_label).at(prototype) = objID_fruit;
+
1314 context_ptr->hideObject({objID_fruit});
+
1315 }
+
1316 }
+
1317 }
+
1318
+
1319 for(int fruit=0; fruit < phytomer_parameters.inflorescence.flowers_per_peduncle.val(); fruit++ ){
+
1320
+
1321 uint objID_fruit;
+
1322 helios::vec3 fruit_scale;
1323
-
1324 float ind_from_tip = fabs(fruit- float(phytomer_parameters.inflorescence.flowers_per_rachis.val() - 1) / 2.f);
-
1325
-
1326 context_ptr->scaleObject( objID_fruit, fruit_scale );
-
1327
-
1328 //if we have more than one flower/fruit, we need to adjust the base position of the fruit
-
1329 vec3 fruit_base = peduncle_vertices.back();
-
1330 float frac = 1;
-
1331 if(phytomer_parameters.inflorescence.flowers_per_rachis.val() > 1 && phytomer_parameters.inflorescence.flower_offset.val() > 0 ){
-
1332 if( ind_from_tip != 0 ) {
-
1333 float offset = 0;
-
1334 if(phytomer_parameters.inflorescence.flower_arrangement_pattern == "opposite" ){
-
1335 offset = (ind_from_tip - 0.5f) * phytomer_parameters.inflorescence.flower_offset.val() * phytomer_parameters.peduncle.length.val();
-
1336 }else if(phytomer_parameters.inflorescence.flower_arrangement_pattern == "alternate" ){
-
1337 offset = (ind_from_tip - 0.5f + 0.5f*float(fruit> float(phytomer_parameters.inflorescence.flowers_per_rachis.val() - 1) / 2.f) ) * phytomer_parameters.inflorescence.flower_offset.val() * phytomer_parameters.peduncle.length.val();
-
1338 }else{
-
1339 helios_runtime_error("ERROR (PlantArchitecture::updateInflorescence): Invalid fruit arrangement pattern.");
-
1340 }
-
1341 if( phytomer_parameters.peduncle.length.val()>0 ){
-
1342 frac = 1.f - offset / phytomer_parameters.peduncle.length.val();
-
1343 }
-
1344 fruit_base = interpolateTube(peduncle_vertices, frac);
-
1345 }
-
1346 }
-
1347
-
1348 //if we have more than one flower/fruit, we need to adjust the rotation about the peduncle
-
1349 float compound_rotation = 0;
-
1350 if(phytomer_parameters.inflorescence.flowers_per_rachis.val() > 1 ) {
-
1351 if (phytomer_parameters.inflorescence.flower_offset.val() == 0) { //flowers/fruit are all at the tip, so just equally distribute them about the azimuth
-
1352 float dphi = M_PI / (floor(0.5 * float(phytomer_parameters.inflorescence.flowers_per_rachis.val() - 1)) + 1);
-
1353 compound_rotation = -float(M_PI) + dphi * (fruit + 0.5f);
-
1354 } else {
-
1355 if( fruit < float(phytomer_parameters.inflorescence.flowers_per_rachis.val() - 1) / 2.f ) {
-
1356 compound_rotation = 0;
-
1357 }else {
-
1358 compound_rotation = M_PI;
-
1359 }
-
1360 }
-
1361 }
-
1362
-
1363 peduncle_axis = getAxisVector(frac, peduncle_vertices );
-
1364
-
1365 vec3 fruit_axis = peduncle_axis;
-
1366
-
1367 //roll rotation
-
1368 if( phytomer_parameters.inflorescence.roll.val()!=0.f ) {
-
1369 context_ptr->rotateObject(objID_fruit, deg2rad(phytomer_parameters.inflorescence.roll.val()), "x" );
-
1370 phytomer_parameters.inflorescence.roll.resample();
+
1324 if(fbud.state == BUD_FRUITING ){
+
1325 if( phytomer_parameters.inflorescence.unique_prototypes>0 ) { //copy existing prototype
+
1326 int prototype = context_ptr->randu(0, int(phytomer_parameters.inflorescence.unique_prototypes - 1));
+
1327 objID_fruit = context_ptr->copyObject(plantarchitecture_ptr->unique_fruit_prototype_objIDs.at(parent_shoot_type_label).at(prototype));
+
1328 }else{ //load new prototype
+
1329 objID_fruit = phytomer_parameters.inflorescence.fruit_prototype_function(context_ptr, 1, fbud.time_counter);
+
1330 }
+
1331 fruit_scale = phytomer_parameters.inflorescence.fruit_prototype_scale.val()*make_vec3(1,1,1);
+
1332 phytomer_parameters.inflorescence.fruit_prototype_scale.resample();
+
1333 }else{
+
1334 bool flower_is_open;
+
1335 if(fbud.state == BUD_FLOWER_CLOSED ) {
+
1336 flower_is_open = false;
+
1337 if( phytomer_parameters.inflorescence.unique_prototypes>0 ) { //copy existing prototype
+
1338 int prototype = context_ptr->randu(0, int(phytomer_parameters.inflorescence.unique_prototypes - 1));
+
1339 objID_fruit = context_ptr->copyObject(plantarchitecture_ptr->unique_closed_flower_prototype_objIDs.at(parent_shoot_type_label).at(prototype));
+
1340 }else{ //load new prototype
+
1341 objID_fruit = phytomer_parameters.inflorescence.flower_prototype_function(context_ptr, 1, flower_is_open);
+
1342 }
+
1343 }else{
+
1344 flower_is_open = true;
+
1345 if( phytomer_parameters.inflorescence.unique_prototypes>0 ) { //copy existing prototype
+
1346 int prototype = context_ptr->randu(0, int(phytomer_parameters.inflorescence.unique_prototypes - 1));
+
1347 objID_fruit = context_ptr->copyObject(plantarchitecture_ptr->unique_open_flower_prototype_objIDs.at(parent_shoot_type_label).at(prototype));
+
1348 }else{ //load new prototype
+
1349 objID_fruit = phytomer_parameters.inflorescence.flower_prototype_function(context_ptr, 1, flower_is_open);
+
1350 }
+
1351 }
+
1352 fruit_scale = phytomer_parameters.inflorescence.flower_prototype_scale.val()*make_vec3(1,1,1);
+
1353 phytomer_parameters.inflorescence.flower_prototype_scale.resample();
+
1354 }
+
1355
+
1356 float ind_from_tip = fabs(fruit - float(phytomer_parameters.inflorescence.flowers_per_peduncle.val() - 1) / float(phytomer_parameters.petiole.petioles_per_internode));
+
1357
+
1358 context_ptr->scaleObject( objID_fruit, fruit_scale );
+
1359
+
1360 //if we have more than one flower/fruit, we need to adjust the base position of the fruit
+
1361 vec3 fruit_base = peduncle_vertices.back();
+
1362 float frac = 1;
+
1363 if(phytomer_parameters.inflorescence.flowers_per_peduncle.val() > 1 && phytomer_parameters.inflorescence.flower_offset.val() > 0 ){
+
1364 if( ind_from_tip != 0 ) {
+
1365 float offset = offset = (ind_from_tip - 0.5f) * phytomer_parameters.inflorescence.flower_offset.val() * phytomer_parameters.peduncle.length.val();
+
1366 if( phytomer_parameters.peduncle.length.val()>0 ){
+
1367 frac = 1.f - offset / phytomer_parameters.peduncle.length.val();
+
1368 }
+
1369 fruit_base = interpolateTube(peduncle_vertices, frac);
+
1370 }
1371 }
1372
-
1373 //pitch rotation
-
1374 float pitch_inflorescence = -asin_safe(peduncle_axis.z) + deg2rad(phytomer_parameters.inflorescence.pitch.val());
-
1375 phytomer_parameters.inflorescence.pitch.resample();
-
1376 if(fbud.state == BUD_FRUITING ) { //gravity effect for fruit
-
1377 pitch_inflorescence = pitch_inflorescence + phytomer_parameters.inflorescence.fruit_gravity_factor_fraction.val() * (0.5f * M_PI - pitch_inflorescence);
-
1378 }
-
1379 context_ptr->rotateObject(objID_fruit, pitch_inflorescence, "y");
-
1380 fruit_axis = rotatePointAboutLine(fruit_axis, nullorigin, make_vec3(1, 0, 0), pitch_inflorescence);
-
1381
-
1382 //rotate flower/fruit to azimuth of peduncle
-
1383 context_ptr->rotateObject(objID_fruit, -std::atan2(peduncle_axis.y, peduncle_axis.x), "z" );
-
1384 fruit_axis = rotatePointAboutLine( fruit_axis, nullorigin, make_vec3(0,0,1), -std::atan2(peduncle_axis.y, peduncle_axis.x) );
-
1385
-
1386 context_ptr->translateObject( objID_fruit, fruit_base );
-
1387
-
1388 //rotate flower/fruit about peduncle (roll)
-
1389 if( phytomer_parameters.inflorescence.fruit_gravity_factor_fraction.val()!=0 && fbud.state == BUD_FRUITING ) {
-
1390 context_ptr->rotateObject(objID_fruit, deg2rad(phytomer_parameters.peduncle.roll.val()) + compound_rotation, fruit_base, make_vec3(0, 0, 1));
-
1391 }else{
-
1392 context_ptr->rotateObject(objID_fruit, deg2rad(phytomer_parameters.peduncle.roll.val()) + compound_rotation, fruit_base, peduncle_axis);
-
1393 fruit_axis = rotatePointAboutLine(fruit_axis, nullorigin, peduncle_axis, deg2rad(phytomer_parameters.peduncle.roll.val()) + compound_rotation);
-
1394 }
-
1395 phytomer_parameters.inflorescence.fruit_gravity_factor_fraction.resample();
-
1396
-
1397 fbud.inflorescence_bases.push_back(fruit_base );
-
1398
-
1399 fbud.inflorescence_objIDs.push_back(objID_fruit );
-
1400
-
1401 }
-
1402 phytomer_parameters.inflorescence.flowers_per_rachis.resample();
-
1403 phytomer_parameters.peduncle.roll.resample();
-
1404
-
1405 if( plantarchitecture_ptr->output_object_data.at("rank") ) {
-
1406 context_ptr->setObjectData(fbud.peduncle_objIDs, "rank", rank );
-
1407 context_ptr->setObjectData(fbud.inflorescence_objIDs, "rank", rank );
-
1408 }
+
1373 //if we have more than one flower/fruit, we need to adjust the rotation about the peduncle
+
1374 float compound_rotation = 0;
+
1375 if(phytomer_parameters.inflorescence.flowers_per_peduncle.val() > 1 ) {
+
1376 if (phytomer_parameters.inflorescence.flower_offset.val() == 0) { //flowers/fruit are all at the tip, so just equally distribute them about the azimuth
+
1377 float dphi = M_PI / (floor(0.5 * float(phytomer_parameters.inflorescence.flowers_per_peduncle.val() - 1)) + 1);
+
1378 compound_rotation = -float(M_PI) + dphi * (fruit + 0.5f);
+
1379 } else {
+
1380 compound_rotation = deg2rad(phytomer_parameters.internode.phyllotactic_angle.val())*float(ind_from_tip) + 2.f*M_PI/float(phytomer_parameters.petiole.petioles_per_internode)*float(fruit);
+
1381 phytomer_parameters.internode.phyllotactic_angle.resample();
+
1382 }
+
1383 }
+
1384
+
1385 peduncle_axis = getAxisVector(frac, peduncle_vertices );
+
1386
+
1387 vec3 fruit_axis = peduncle_axis;
+
1388
+
1389 //roll rotation
+
1390 if( phytomer_parameters.inflorescence.roll.val()!=0.f ) {
+
1391 context_ptr->rotateObject(objID_fruit, deg2rad(phytomer_parameters.inflorescence.roll.val()), "x" );
+
1392 phytomer_parameters.inflorescence.roll.resample();
+
1393 }
+
1394
+
1395 //pitch rotation
+
1396 float pitch_inflorescence = -asin_safe(peduncle_axis.z) + deg2rad(phytomer_parameters.inflorescence.pitch.val());
+
1397 phytomer_parameters.inflorescence.pitch.resample();
+
1398 if(fbud.state == BUD_FRUITING ) { //gravity effect for fruit
+
1399 pitch_inflorescence = pitch_inflorescence + phytomer_parameters.inflorescence.fruit_gravity_factor_fraction.val() * (0.5f * M_PI - pitch_inflorescence);
+
1400 }
+
1401 context_ptr->rotateObject(objID_fruit, pitch_inflorescence, "y");
+
1402 fruit_axis = rotatePointAboutLine(fruit_axis, nullorigin, make_vec3(1, 0, 0), pitch_inflorescence);
+
1403
+
1404 //rotate flower/fruit to azimuth of peduncle
+
1405 context_ptr->rotateObject(objID_fruit, -std::atan2(peduncle_axis.y, peduncle_axis.x), "z" );
+
1406 fruit_axis = rotatePointAboutLine( fruit_axis, nullorigin, make_vec3(0,0,1), -std::atan2(peduncle_axis.y, peduncle_axis.x) );
+
1407
+
1408 context_ptr->translateObject( objID_fruit, fruit_base );
1409
-
1410 if( plantarchitecture_ptr->output_object_data.at("peduncleID") ) {
-
1411 for (uint objID: fbud.peduncle_objIDs) {
-
1412 context_ptr->setObjectData(objID, "peduncleID", (int) objID);
-
1413 }
-
1414 }
-
1415 for( uint objID : fbud.inflorescence_objIDs ) {
-
1416 if( fbud.state == BUD_FLOWER_CLOSED && plantarchitecture_ptr->output_object_data.at("closedflowerID") ) {
-
1417 context_ptr->setObjectData( objID, "closedflowerID", (int) objID);
-
1418 }else if( fbud.state == BUD_FLOWER_OPEN && plantarchitecture_ptr->output_object_data.at("openflowerID") ) {
-
1419 context_ptr->clearObjectData( objID, "closedflowerID" );
-
1420 context_ptr->setObjectData( objID, "openflowerID", (int) objID);
-
1421 }else if( plantarchitecture_ptr->output_object_data.at("fruitID") ){
-
1422 context_ptr->setObjectData( objID, "fruitID", (int) objID);
-
1423 }
-
1424 }
-
1425
-
1426}
-
1427
-
1428void Phytomer::setPetioleBase( const helios::vec3 &base_position ){
-
1429
-
1430 vec3 old_base = petiole_vertices.front().front();
-
1431 vec3 shift = base_position - old_base;
-
1432
-
1433 for( int petiole=0; petiole<phytomer_parameters.petiole.petioles_per_internode; petiole++ ) {
-
1434 for (auto &vertex: petiole_vertices.at(petiole) ) {
-
1435 vertex += shift;
-
1436 }
-
1437 }
-
1438
-
1439 if( build_context_geometry_petiole ) {
-
1440 context_ptr->translateObject(flatten(petiole_objIDs), shift);
-
1441 }
-
1442 context_ptr->translateObject( flatten(leaf_objIDs), shift );
-
1443
-
1444 for( int petiole=0; petiole<leaf_bases.size(); petiole++ ) {
-
1445 for (auto &leaf_base: leaf_bases.at(petiole)) {
-
1446 leaf_base += shift;
-
1447 }
-
1448 for ( auto &fbud : floral_buds.at(petiole) ) {
-
1449 assert( !fbud.isterminal );
-
1450 fbud.base_position = petiole_vertices.at(petiole).front();
-
1451 context_ptr->translateObject( fbud.inflorescence_objIDs, shift);
-
1452 for( auto &base : fbud.inflorescence_bases ) {
-
1453 base += shift;
-
1454 }
-
1455 if( build_context_geometry_peduncle ) {
-
1456 context_ptr->translateObject( fbud.peduncle_objIDs, shift);
-
1457 }
+
1410 //rotate flower/fruit about peduncle (roll)
+
1411 if( phytomer_parameters.inflorescence.fruit_gravity_factor_fraction.val()!=0 && fbud.state == BUD_FRUITING ) {
+
1412 context_ptr->rotateObject(objID_fruit, deg2rad(phytomer_parameters.peduncle.roll.val()) + compound_rotation, fruit_base, make_vec3(0, 0, 1));
+
1413 }else{
+
1414 context_ptr->rotateObject(objID_fruit, deg2rad(phytomer_parameters.peduncle.roll.val()) + compound_rotation, fruit_base, peduncle_axis);
+
1415 fruit_axis = rotatePointAboutLine(fruit_axis, nullorigin, peduncle_axis, deg2rad(phytomer_parameters.peduncle.roll.val()) + compound_rotation);
+
1416 }
+
1417 phytomer_parameters.inflorescence.fruit_gravity_factor_fraction.resample();
+
1418
+
1419 fbud.inflorescence_bases.push_back(fruit_base );
+
1420
+
1421 fbud.inflorescence_objIDs.push_back(objID_fruit );
+
1422
+
1423 }
+
1424 phytomer_parameters.inflorescence.flowers_per_peduncle.resample();
+
1425 phytomer_parameters.peduncle.roll.resample();
+
1426
+
1427 if( plantarchitecture_ptr->output_object_data.at("rank") ) {
+
1428 context_ptr->setObjectData(fbud.peduncle_objIDs, "rank", rank );
+
1429 context_ptr->setObjectData(fbud.inflorescence_objIDs, "rank", rank );
+
1430 }
+
1431
+
1432 if( plantarchitecture_ptr->output_object_data.at("peduncleID") ) {
+
1433 for (uint objID: fbud.peduncle_objIDs) {
+
1434 context_ptr->setObjectData(objID, "peduncleID", (int) objID);
+
1435 }
+
1436 }
+
1437 for( uint objID : fbud.inflorescence_objIDs ) {
+
1438 if( fbud.state == BUD_FLOWER_CLOSED && plantarchitecture_ptr->output_object_data.at("closedflowerID") ) {
+
1439 context_ptr->setObjectData( objID, "closedflowerID", (int) objID);
+
1440 }else if( fbud.state == BUD_FLOWER_OPEN && plantarchitecture_ptr->output_object_data.at("openflowerID") ) {
+
1441 context_ptr->clearObjectData( objID, "closedflowerID" );
+
1442 context_ptr->setObjectData( objID, "openflowerID", (int) objID);
+
1443 }else if( plantarchitecture_ptr->output_object_data.at("fruitID") ){
+
1444 context_ptr->setObjectData( objID, "fruitID", (int) objID);
+
1445 }
+
1446 }
+
1447
+
1448}
+
1449
+
1450void Phytomer::setPetioleBase( const helios::vec3 &base_position ){
+
1451
+
1452 vec3 old_base = petiole_vertices.front().front();
+
1453 vec3 shift = base_position - old_base;
+
1454
+
1455 for( int petiole=0; petiole<phytomer_parameters.petiole.petioles_per_internode; petiole++ ) {
+
1456 for (auto &vertex: petiole_vertices.at(petiole) ) {
+
1457 vertex += shift;
1458 }
1459 }
1460
-
1461}
-
1462
-
1463void Phytomer::rotateLeaf( uint petiole_index, uint leaf_index, const AxisRotation &rotation ){
-
1464
-
1465 if( petiole_index>=leaf_objIDs.size() ){
-
1466 helios_runtime_error("ERROR (PlantArchitecture::Phytomer): Invalid petiole index.");
-
1467 }else if( leaf_index>=leaf_objIDs.at(petiole_index).size() ){
-
1468 helios_runtime_error("ERROR (PlantArchitecture::Phytomer): Invalid leaf index.");
-
1469 }
-
1470
-
1471 vec3 petiole_axis = getPetioleAxisVector(1.f, petiole_index); //note: this is not exactly correct because it should get the axis at the leaf position and not the tip
-
1472
-
1473 vec3 internode_axis = getInternodeAxisVector(1.f);
-
1474
-
1475 vec3 pitch_axis = -1*cross( internode_axis, petiole_axis );
-
1476
-
1477 int leaves_per_petiole = leaf_rotation.at(petiole_index).size();
-
1478 float yaw;
-
1479 float roll;
-
1480 float compound_rotation = 0;
-
1481 if( leaf_index == float(leaves_per_petiole-1)/2.f ){ //tip leaf
-
1482 roll = 0;
-
1483 yaw = 0;
-
1484 compound_rotation = 0;
-
1485 }else if( leaf_index < float(leaves_per_petiole-1)/2.f ) {
-
1486 yaw = -rotation.yaw;
-
1487 roll = -rotation.roll;
-
1488 compound_rotation = -0.5*M_PI;
-
1489 }else{
-
1490 yaw = -rotation.yaw;
-
1491 roll = rotation.roll;
-
1492 compound_rotation = 0.5*M_PI;
-
1493 }
+
1461 if( build_context_geometry_petiole ) {
+
1462 context_ptr->translateObject(flatten(petiole_objIDs), shift);
+
1463 }
+
1464 context_ptr->translateObject( flatten(leaf_objIDs), shift );
+
1465
+
1466 for( int petiole=0; petiole<leaf_bases.size(); petiole++ ) {
+
1467 for (auto &leaf_base: leaf_bases.at(petiole)) {
+
1468 leaf_base += shift;
+
1469 }
+
1470 for ( auto &fbud : floral_buds.at(petiole) ) {
+
1471 assert( !fbud.isterminal );
+
1472 fbud.base_position = petiole_vertices.at(petiole).front();
+
1473 context_ptr->translateObject( fbud.inflorescence_objIDs, shift);
+
1474 for( auto &base : fbud.inflorescence_bases ) {
+
1475 base += shift;
+
1476 }
+
1477 if( build_context_geometry_peduncle ) {
+
1478 context_ptr->translateObject( fbud.peduncle_objIDs, shift);
+
1479 }
+
1480 }
+
1481 }
+
1482
+
1483}
+
1484
+
1485void Phytomer::rotateLeaf( uint petiole_index, uint leaf_index, const AxisRotation &rotation ){
+
1486
+
1487 if( petiole_index>=leaf_objIDs.size() ){
+
1488 helios_runtime_error("ERROR (PlantArchitecture::Phytomer): Invalid petiole index.");
+
1489 }else if( leaf_index>=leaf_objIDs.at(petiole_index).size() ){
+
1490 helios_runtime_error("ERROR (PlantArchitecture::Phytomer): Invalid leaf index.");
+
1491 }
+
1492
+
1493 vec3 petiole_axis = getPetioleAxisVector(1.f, petiole_index); //note: this is not exactly correct because it should get the axis at the leaf position and not the tip
1494
-
1495 //roll
-
1496 if( roll!=0.f ) {
-
1497 vec3 roll_axis = rotatePointAboutLine({petiole_axis.x, petiole_axis.y, 0}, nullorigin, {0, 0, 1}, leaf_rotation.at(petiole_index).at(leaf_index).yaw + compound_rotation);
-
1498 context_ptr->rotateObject(leaf_objIDs.at(petiole_index).at(leaf_index), roll, leaf_bases.at(petiole_index).at(leaf_index), roll_axis);
-
1499 leaf_rotation.at(petiole_index).at(leaf_index).roll += roll;
-
1500 }
-
1501
-
1502 //pitch
-
1503 if( rotation.pitch!=0 ) {
-
1504 pitch_axis = rotatePointAboutLine(pitch_axis, nullorigin, {0, 0, 1}, -compound_rotation);
-
1505 context_ptr->rotateObject(leaf_objIDs.at(petiole_index).at(leaf_index), rotation.pitch, leaf_bases.at(petiole_index).at(leaf_index), pitch_axis);
-
1506 leaf_rotation.at(petiole_index).at(leaf_index).pitch += rotation.pitch;
-
1507 }
-
1508
-
1509 //yaw
-
1510 if( yaw!=0.f ) {
-
1511 context_ptr->rotateObject(leaf_objIDs.at(petiole_index).at(leaf_index), yaw, leaf_bases.at(petiole_index).at(leaf_index), {0, 0, 1});
-
1512 leaf_rotation.at(petiole_index).at(leaf_index).yaw += yaw;
-
1513 }
-
1514
-
1515}
+
1495 vec3 internode_axis = getInternodeAxisVector(1.f);
+
1496
+
1497 vec3 pitch_axis = -1*cross( internode_axis, petiole_axis );
+
1498
+
1499 int leaves_per_petiole = leaf_rotation.at(petiole_index).size();
+
1500 float yaw;
+
1501 float roll;
+
1502 float compound_rotation = 0;
+
1503 if( leaf_index == float(leaves_per_petiole-1)/2.f ){ //tip leaf
+
1504 roll = 0;
+
1505 yaw = 0;
+
1506 compound_rotation = 0;
+
1507 }else if( leaf_index < float(leaves_per_petiole-1)/2.f ) {
+
1508 yaw = -rotation.yaw;
+
1509 roll = -rotation.roll;
+
1510 compound_rotation = -0.5*M_PI;
+
1511 }else{
+
1512 yaw = -rotation.yaw;
+
1513 roll = rotation.roll;
+
1514 compound_rotation = 0.5*M_PI;
+
1515 }
1516
-
1517void Phytomer::setInternodeLengthScaleFraction(float internode_scale_factor_fraction, bool update_context_geometry) {
-
1518
-
1519 assert(internode_scale_factor_fraction >= 0 && internode_scale_factor_fraction <= 1 );
-
1520
-
1521 if(internode_scale_factor_fraction == current_internode_scale_factor ){
-
1522 return;
-
1523 }
-
1524
-
1525 float delta_scale = internode_scale_factor_fraction / current_internode_scale_factor;
-
1526
-
1527 float current_internode_length = getInternodeLength();
-
1528 float internode_length = current_internode_length*delta_scale;
-
1529 current_internode_scale_factor = internode_scale_factor_fraction;
+
1517 //roll
+
1518 if( roll!=0.f ) {
+
1519 vec3 roll_axis = rotatePointAboutLine({petiole_axis.x, petiole_axis.y, 0}, nullorigin, {0, 0, 1}, leaf_rotation.at(petiole_index).at(leaf_index).yaw + compound_rotation);
+
1520 context_ptr->rotateObject(leaf_objIDs.at(petiole_index).at(leaf_index), roll, leaf_bases.at(petiole_index).at(leaf_index), roll_axis);
+
1521 leaf_rotation.at(petiole_index).at(leaf_index).roll += roll;
+
1522 }
+
1523
+
1524 //pitch
+
1525 if( rotation.pitch!=0 ) {
+
1526 pitch_axis = rotatePointAboutLine(pitch_axis, nullorigin, {0, 0, 1}, -compound_rotation);
+
1527 context_ptr->rotateObject(leaf_objIDs.at(petiole_index).at(leaf_index), rotation.pitch, leaf_bases.at(petiole_index).at(leaf_index), pitch_axis);
+
1528 leaf_rotation.at(petiole_index).at(leaf_index).pitch += rotation.pitch;
+
1529 }
1530
-
1531 int p = shoot_index.x;
-
1532 int s_start = (p == 0) ? 1 : 0; //skip the first node at the base of the shoot
-
1533
-
1534 for (int s = s_start; s < parent_shoot_ptr->shoot_internode_vertices.at(p).size(); s++) { //looping over all segments within this phytomer internode
-
1535
-
1536 int p_minus = p;
-
1537 int s_minus = s-1;
-
1538 if( s_minus<0 ){
-
1539 p_minus--;
-
1540 s_minus = int(parent_shoot_ptr->shoot_internode_vertices.at(p_minus).size()-1);
-
1541 }
+
1531 //yaw
+
1532 if( yaw!=0.f ) {
+
1533 context_ptr->rotateObject(leaf_objIDs.at(petiole_index).at(leaf_index), yaw, leaf_bases.at(petiole_index).at(leaf_index), {0, 0, 1});
+
1534 leaf_rotation.at(petiole_index).at(leaf_index).yaw += yaw;
+
1535 }
+
1536
+
1537}
+
1538
+
1539void Phytomer::setInternodeLengthScaleFraction(float internode_scale_factor_fraction, bool update_context_geometry) {
+
1540
+
1541 assert(internode_scale_factor_fraction >= 0 && internode_scale_factor_fraction <= 1 );
1542
-
1543 vec3 central_axis = (parent_shoot_ptr->shoot_internode_vertices.at(p).at(s) - parent_shoot_ptr->shoot_internode_vertices.at(p_minus).at(s_minus));
-
1544 float current_length = central_axis.magnitude();
-
1545 central_axis = central_axis / current_length;
-
1546 vec3 dL = central_axis * current_length * (delta_scale - 1);
-
1547
-
1548 //apply shift to all downstream nodes
-
1549 for (int p_downstream = p; p_downstream < parent_shoot_ptr->shoot_internode_vertices.size(); p_downstream++) {
-
1550 int sd_start = ( p_downstream==p ) ? s : 0;
-
1551 for (int s_downstream = sd_start; s_downstream < parent_shoot_ptr->shoot_internode_vertices.at(p_downstream).size(); s_downstream++) {
-
1552 parent_shoot_ptr->shoot_internode_vertices.at(p_downstream).at(s_downstream) += dL;
-
1553 }
-
1554
-
1555 }
-
1556
-
1557 }
-
1558
-
1559 parent_shoot_ptr->updateShootNodes(update_context_geometry);
-
1560
-
1561
-
1562}
-
1563
-
-
1564void Phytomer::scaleInternodeMaxLength( float scale_factor ){
-
1565 this->internode_length_max *= scale_factor;
-
1566
-
1567 current_internode_scale_factor = current_internode_scale_factor/scale_factor;
-
1568
-
1569 if( current_internode_scale_factor>=1.f ){
-
1570 setInternodeLengthScaleFraction(1.f, true);
-
1571 current_internode_scale_factor = 1.f;
-
1572 }
-
1573}
-
-
1574
-
-
1575void Phytomer::setInternodeMaxLength( float internode_length_max_new ){
-
1576 float scale_factor = internode_length_max_new/this->internode_length_max;
-
1577 scaleInternodeMaxLength(scale_factor);
-
1578}
-
-
1579
-
-
1580void Phytomer::setInternodeMaxRadius( float internode_radius_max_new ){
-
1581
-
1582 this->internode_radius_max = internode_radius_max_new;
+
1543 if(internode_scale_factor_fraction == current_internode_scale_factor ){
+
1544 return;
+
1545 }
+
1546
+
1547 float delta_scale = internode_scale_factor_fraction / current_internode_scale_factor;
+
1548
+
1549 float current_internode_length = getInternodeLength();
+
1550 float internode_length = current_internode_length*delta_scale;
+
1551 current_internode_scale_factor = internode_scale_factor_fraction;
+
1552
+
1553 int p = shoot_index.x;
+
1554 int s_start = (p == 0) ? 1 : 0; //skip the first node at the base of the shoot
+
1555
+
1556 for (int s = s_start; s < parent_shoot_ptr->shoot_internode_vertices.at(p).size(); s++) { //looping over all segments within this phytomer internode
+
1557
+
1558 int p_minus = p;
+
1559 int s_minus = s-1;
+
1560 if( s_minus<0 ){
+
1561 p_minus--;
+
1562 s_minus = int(parent_shoot_ptr->shoot_internode_vertices.at(p_minus).size()-1);
+
1563 }
+
1564
+
1565 vec3 central_axis = (parent_shoot_ptr->shoot_internode_vertices.at(p).at(s) - parent_shoot_ptr->shoot_internode_vertices.at(p_minus).at(s_minus));
+
1566 float current_length = central_axis.magnitude();
+
1567 central_axis = central_axis / current_length;
+
1568 vec3 dL = central_axis * current_length * (delta_scale - 1);
+
1569
+
1570 //apply shift to all downstream nodes
+
1571 for (int p_downstream = p; p_downstream < parent_shoot_ptr->shoot_internode_vertices.size(); p_downstream++) {
+
1572 int sd_start = ( p_downstream==p ) ? s : 0;
+
1573 for (int s_downstream = sd_start; s_downstream < parent_shoot_ptr->shoot_internode_vertices.at(p_downstream).size(); s_downstream++) {
+
1574 parent_shoot_ptr->shoot_internode_vertices.at(p_downstream).at(s_downstream) += dL;
+
1575 }
+
1576
+
1577 }
+
1578
+
1579 }
+
1580
+
1581 parent_shoot_ptr->updateShootNodes(update_context_geometry);
+
1582
1583
1584}
-
1585
-
1586void Phytomer::setLeafScaleFraction(float leaf_scale_factor_fraction ){
-
1587
-
1588 assert(leaf_scale_factor_fraction >= 0 && leaf_scale_factor_fraction <= 1 );
-
1589
-
1590 if(leaf_scale_factor_fraction == current_leaf_scale_factor || (leaf_objIDs.empty() && petiole_objIDs.empty()) ){
-
1591 return;
-
1592 }
-
1593
-
1594 float delta_scale = leaf_scale_factor_fraction / current_leaf_scale_factor;
-
1595
-
1596 for( int petiole=0; petiole<phytomer_parameters.petiole.petioles_per_internode; petiole++ ) {
-
1597 petiole_length.at(petiole) *= delta_scale;
-
1598 }
-
1599 current_leaf_scale_factor = leaf_scale_factor_fraction;
-
1600
-
1601 assert(leaf_objIDs.size() == leaf_bases.size());
-
1602
-
1603 //scale the petiole
-
1604 for( int petiole=0; petiole<phytomer_parameters.petiole.petioles_per_internode; petiole++ ) {
+
1586void Phytomer::scaleInternodeMaxLength( float scale_factor ){
+
1587 this->internode_length_max *= scale_factor;
+
1588
+
1589 current_internode_scale_factor = current_internode_scale_factor/scale_factor;
+
1590
+
1591 if( current_internode_scale_factor>=1.f ){
+
1592 setInternodeLengthScaleFraction(1.f, true);
+
1593 current_internode_scale_factor = 1.f;
+
1594 }
+
1595}
+
+
1596
+
+
1597void Phytomer::setInternodeMaxLength( float internode_length_max_new ){
+
1598 float scale_factor = internode_length_max_new/this->internode_length_max;
+
1599 scaleInternodeMaxLength(scale_factor);
+
1600}
+
+
1601
+
+
1602void Phytomer::setInternodeMaxRadius( float internode_radius_max_new ){
+
1603
+
1604 this->internode_radius_max = internode_radius_max_new;
1605
-
1606 if( !petiole_objIDs.empty() ) {
-
1607 int node = 0;
-
1608 vec3 old_tip = petiole_vertices.at(petiole).back();
-
1609 vec3 last_base = petiole_vertices.at(petiole).front();//looping over petioles
-
1610 for (uint objID: petiole_objIDs.at(petiole)) { //looping over cones/segments within petiole
-
1611 context_ptr->getConeObjectPointer(objID)->scaleLength(delta_scale);
-
1612 context_ptr->getConeObjectPointer(objID)->scaleGirth(delta_scale);
-
1613 petiole_radii.at(petiole).at(node) *= delta_scale;
-
1614 if (node > 0) {
-
1615 vec3 new_base = context_ptr->getConeObjectNode(objID, 0);
-
1616 context_ptr->translateObject(objID, last_base - new_base);
-
1617 } else {
-
1618 petiole_vertices.at(petiole).at(0) = context_ptr->getConeObjectNode(objID, 0);
-
1619 }
-
1620 last_base = context_ptr->getConeObjectNode(objID, 1);
-
1621 petiole_vertices.at(petiole).at(node + 1) = last_base;
-
1622 node++;
-
1623 }
-
1624 }else{
-
1625 for( int i=1; i<petiole_vertices.at(petiole).size(); i++ ) {
-
1626 vec3 axis_vector = petiole_vertices.at(petiole).at(i) - petiole_vertices.at(petiole).at(i-1);
-
1627 petiole_vertices.at(petiole).at(i) = petiole_vertices.at(petiole).at(i-1) + delta_scale*axis_vector;
-
1628 petiole_radii.at(petiole).at(i) *= delta_scale;
-
1629 }
-
1630 }
-
1631
-
1632 //scale and translate leaves
-
1633 assert(leaf_objIDs.at(petiole).size() == leaf_bases.at(petiole).size());
-
1634 for (int leaf = 0; leaf < leaf_objIDs.at(petiole).size(); leaf++) {
-
1635
-
1636 float ind_from_tip = float(leaf) - float(leaf_objIDs.at(petiole).size() - 1) / 2.f;
-
1637
-
1638 context_ptr->translateObject(leaf_objIDs.at(petiole).at(leaf), -1 * leaf_bases.at(petiole).at(leaf));
-
1639 context_ptr->scaleObject(leaf_objIDs.at(petiole).at(leaf), delta_scale * make_vec3(1, 1, 1));
-
1640 if (ind_from_tip == 0) {
-
1641 context_ptr->translateObject(leaf_objIDs.at(petiole).at(leaf), petiole_vertices.at(petiole).back());
-
1642 leaf_bases.at(petiole).at(leaf) = petiole_vertices.at(petiole).back();
-
1643 } else {
-
1644 float offset = (fabs(ind_from_tip) - 0.5f) * phytomer_parameters.leaf.leaflet_offset.val() * phytomer_parameters.petiole.length.val();
-
1645 vec3 leaf_base = interpolateTube(petiole_vertices.at(petiole), 1.f - offset / phytomer_parameters.petiole.length.val());
-
1646 context_ptr->translateObject(leaf_objIDs.at(petiole).at(leaf), leaf_base);
-
1647 leaf_bases.at(petiole).at(leaf) = leaf_base;
-
1648 }
-
1649
-
1650 }
-
1651
-
1652 }
-
1653
-
1654}
+
1606}
-
1655
-
-
1656void Phytomer::setLeafPrototypeScale( float leaf_prototype_scale ){
+
1607
+
+
1608void Phytomer::setLeafScaleFraction(float leaf_scale_factor_fraction ){
+
1609
+
1610 assert(leaf_scale_factor_fraction >= 0 && leaf_scale_factor_fraction <= 1 );
+
1611
+
1612 if(leaf_scale_factor_fraction == current_leaf_scale_factor || (leaf_objIDs.empty() && petiole_objIDs.empty()) ){
+
1613 return;
+
1614 }
+
1615
+
1616 float delta_scale = leaf_scale_factor_fraction / current_leaf_scale_factor;
+
1617
+
1618 for( int petiole=0; petiole<phytomer_parameters.petiole.petioles_per_internode; petiole++ ) {
+
1619 petiole_length.at(petiole) *= delta_scale;
+
1620 }
+
1621 current_leaf_scale_factor = leaf_scale_factor_fraction;
+
1622
+
1623 assert(leaf_objIDs.size() == leaf_bases.size());
+
1624
+
1625 //scale the petiole
+
1626 for( int petiole=0; petiole<phytomer_parameters.petiole.petioles_per_internode; petiole++ ) {
+
1627
+
1628 if( !petiole_objIDs.empty() ) {
+
1629 int node = 0;
+
1630 vec3 old_tip = petiole_vertices.at(petiole).back();
+
1631 vec3 last_base = petiole_vertices.at(petiole).front();//looping over petioles
+
1632 for (uint objID: petiole_objIDs.at(petiole)) { //looping over cones/segments within petiole
+
1633 context_ptr->getConeObjectPointer(objID)->scaleLength(delta_scale);
+
1634 context_ptr->getConeObjectPointer(objID)->scaleGirth(delta_scale);
+
1635 petiole_radii.at(petiole).at(node) *= delta_scale;
+
1636 if (node > 0) {
+
1637 vec3 new_base = context_ptr->getConeObjectNode(objID, 0);
+
1638 context_ptr->translateObject(objID, last_base - new_base);
+
1639 } else {
+
1640 petiole_vertices.at(petiole).at(0) = context_ptr->getConeObjectNode(objID, 0);
+
1641 }
+
1642 last_base = context_ptr->getConeObjectNode(objID, 1);
+
1643 petiole_vertices.at(petiole).at(node + 1) = last_base;
+
1644 node++;
+
1645 }
+
1646 }else{
+
1647 for( int i=1; i<petiole_vertices.at(petiole).size(); i++ ) {
+
1648 vec3 axis_vector = petiole_vertices.at(petiole).at(i) - petiole_vertices.at(petiole).at(i-1);
+
1649 petiole_vertices.at(petiole).at(i) = petiole_vertices.at(petiole).at(i-1) + delta_scale*axis_vector;
+
1650 petiole_radii.at(petiole).at(i) *= delta_scale;
+
1651 }
+
1652 }
+
1653
+
1654 //scale and translate leaves
+
1655 assert(leaf_objIDs.at(petiole).size() == leaf_bases.at(petiole).size());
+
1656 for (int leaf = 0; leaf < leaf_objIDs.at(petiole).size(); leaf++) {
1657
-
1658 float tip_ind = ceil(float(leaf_size_max.front().size()-1)/2.f);
-
1659 float scale_factor = leaf_prototype_scale/leaf_size_max.front().at(tip_ind);
-
1660 current_leaf_scale_factor = current_leaf_scale_factor*scale_factor;
-
1661
-
1662 for( int petiole=0; petiole<phytomer_parameters.petiole.petioles_per_internode; petiole++ ) {
-
1663 for (int leaf = 0; leaf < leaf_objIDs.at(petiole).size(); leaf++) {
-
1664 leaf_size_max.at(petiole).at(leaf)*=scale_factor;
-
1665 }
-
1666 }
-
1667
-
1668 //note: at time of phytomer creation, petiole curvature was based on the petiole length prior to this scaling. To stay consistent, we will scale the curvature appropriately.
-
1669 this->petiole_curvature /= scale_factor;
-
1670
-
1671 if( current_leaf_scale_factor>=1.f ){
-
1672 setLeafScaleFraction(1.f);
-
1673 current_leaf_scale_factor = 1.f;
+
1658 float ind_from_tip = float(leaf) - float(leaf_objIDs.at(petiole).size() - 1) / 2.f;
+
1659
+
1660 context_ptr->translateObject(leaf_objIDs.at(petiole).at(leaf), -1 * leaf_bases.at(petiole).at(leaf));
+
1661 context_ptr->scaleObject(leaf_objIDs.at(petiole).at(leaf), delta_scale * make_vec3(1, 1, 1));
+
1662 if (ind_from_tip == 0) {
+
1663 context_ptr->translateObject(leaf_objIDs.at(petiole).at(leaf), petiole_vertices.at(petiole).back());
+
1664 leaf_bases.at(petiole).at(leaf) = petiole_vertices.at(petiole).back();
+
1665 } else {
+
1666 float offset = (fabs(ind_from_tip) - 0.5f) * phytomer_parameters.leaf.leaflet_offset.val() * phytomer_parameters.petiole.length.val();
+
1667 vec3 leaf_base = interpolateTube(petiole_vertices.at(petiole), 1.f - offset / phytomer_parameters.petiole.length.val());
+
1668 context_ptr->translateObject(leaf_objIDs.at(petiole).at(leaf), leaf_base);
+
1669 leaf_bases.at(petiole).at(leaf) = leaf_base;
+
1670 }
+
1671
+
1672 }
+
1673
1674 }
1675
1676}
1677
-
1678void Phytomer::scaleLeafPrototypeScale( float scale_factor ){
+
+
1678void Phytomer::setLeafPrototypeScale( float leaf_prototype_scale ){
1679
-
1680 if( scale_factor<0.f ) {
-
1681 scale_factor = 0;
-
1682 }
+
1680 float tip_ind = ceil(float(leaf_size_max.front().size()-1)/2.f);
+
1681 float scale_factor = leaf_prototype_scale/leaf_size_max.front().at(tip_ind);
+
1682 current_leaf_scale_factor = current_leaf_scale_factor*scale_factor;
1683
-
1684 current_leaf_scale_factor = current_leaf_scale_factor/scale_factor;
-
1685
-
1686 for( int petiole=0; petiole<phytomer_parameters.petiole.petioles_per_internode; petiole++ ) {
-
1687 for (int leaf = 0; leaf < leaf_objIDs.at(petiole).size(); leaf++) {
-
1688 leaf_size_max.at(petiole).at(leaf) *= scale_factor;
-
1689 }
-
1690 }
-
1691
-
1692 //note: at time of phytomer creation, petiole curvature was based on the petiole length prior to this scaling. To stay consistent, we will scale the curvature appropriately.
-
1693 this->petiole_curvature /= scale_factor;
-
1694
-
1695 if( current_leaf_scale_factor>=1.f ){
-
1696 setLeafScaleFraction(1.f);
-
1697 current_leaf_scale_factor = 1.f;
-
1698 }
+
1684 for( int petiole=0; petiole<phytomer_parameters.petiole.petioles_per_internode; petiole++ ) {
+
1685 for (int leaf = 0; leaf < leaf_objIDs.at(petiole).size(); leaf++) {
+
1686 leaf_size_max.at(petiole).at(leaf)*=scale_factor;
+
1687 }
+
1688 }
+
1689
+
1690 //note: at time of phytomer creation, petiole curvature was based on the petiole length prior to this scaling. To stay consistent, we will scale the curvature appropriately.
+
1691 this->petiole_curvature /= scale_factor;
+
1692
+
1693 if( current_leaf_scale_factor>=1.f ){
+
1694 setLeafScaleFraction(1.f);
+
1695 current_leaf_scale_factor = 1.f;
+
1696 }
+
1697
+
1698}
+
1699
-
1700}
+
1700void Phytomer::scaleLeafPrototypeScale( float scale_factor ){
1701
-
1702
-
1703void Phytomer::setInflorescenceScaleFraction(FloralBud &fbud, float inflorescence_scale_factor_fraction) {
-
1704
-
1705 assert(inflorescence_scale_factor_fraction >= 0 && inflorescence_scale_factor_fraction <= 1 );
-
1706
-
1707 if(inflorescence_scale_factor_fraction == fbud.current_fruit_scale_factor ){
-
1708 return;
-
1709 }
-
1710
-
1711 float delta_scale = inflorescence_scale_factor_fraction / fbud.current_fruit_scale_factor;
-
1712
-
1713 fbud.current_fruit_scale_factor = inflorescence_scale_factor_fraction;
-
1714
-
1715 //scale and translate flowers/fruit
-
1716 for( int inflorescence=0; inflorescence<fbud.inflorescence_objIDs.size(); inflorescence++ ) {
-
1717 context_ptr->scaleObjectAboutPoint(fbud.inflorescence_objIDs.at(inflorescence), delta_scale*make_vec3(1,1,1), fbud.inflorescence_bases.at(inflorescence));
-
1718 }
-
1719
-
1720}
+
1702 if( scale_factor<0.f ) {
+
1703 scale_factor = 0;
+
1704 }
+
1705
+
1706 current_leaf_scale_factor = current_leaf_scale_factor/scale_factor;
+
1707
+
1708 for( int petiole=0; petiole<phytomer_parameters.petiole.petioles_per_internode; petiole++ ) {
+
1709 for (int leaf = 0; leaf < leaf_objIDs.at(petiole).size(); leaf++) {
+
1710 leaf_size_max.at(petiole).at(leaf) *= scale_factor;
+
1711 }
+
1712 }
+
1713
+
1714 //note: at time of phytomer creation, petiole curvature was based on the petiole length prior to this scaling. To stay consistent, we will scale the curvature appropriately.
+
1715 this->petiole_curvature /= scale_factor;
+
1716
+
1717 if( current_leaf_scale_factor>=1.f ){
+
1718 setLeafScaleFraction(1.f);
+
1719 current_leaf_scale_factor = 1.f;
+
1720 }
1721
-
1722void Phytomer::removeLeaf(){
+
1722}
1723
-
1724 context_ptr->deleteObject(flatten(leaf_objIDs));
-
1725 leaf_objIDs.resize(0);
-
1726 leaf_bases.resize(0);
-
1727
-
1728 if( build_context_geometry_petiole ) {
-
1729 context_ptr->deleteObject(flatten(petiole_objIDs));
-
1730 petiole_objIDs.resize(0);
+
1724
+
1725void Phytomer::setInflorescenceScaleFraction(FloralBud &fbud, float inflorescence_scale_factor_fraction) {
+
1726
+
1727 assert(inflorescence_scale_factor_fraction >= 0 && inflorescence_scale_factor_fraction <= 1 );
+
1728
+
1729 if(inflorescence_scale_factor_fraction == fbud.current_fruit_scale_factor ){
+
1730 return;
1731 }
1732
-
1733}
+
1733 float delta_scale = inflorescence_scale_factor_fraction / fbud.current_fruit_scale_factor;
1734
-
1735bool Phytomer::hasLeaf() const{
-
1736 return !leaf_objIDs.empty();
-
1737}
-
1738
-
1739Shoot::Shoot(uint plant_ID, int shoot_ID, int parent_shoot_ID, uint parent_node, uint parent_petiole_index, uint rank, const helios::vec3 &shoot_base_position, const AxisRotation &shoot_base_rotation, uint current_node_number,
-
1740 float internode_length_shoot_initial, ShootParameters &shoot_params, std::string shoot_type_label, PlantArchitecture *plant_architecture_ptr) :
-
1741 plantID(plant_ID), ID(shoot_ID), parent_shoot_ID(parent_shoot_ID), parent_node_index(parent_node), parent_petiole_index(parent_petiole_index), rank(rank), base_position(shoot_base_position), base_rotation(shoot_base_rotation), current_node_number(current_node_number), internode_length_max_shoot_initial(internode_length_shoot_initial), shoot_parameters(shoot_params), shoot_type_label(std::move(shoot_type_label)), plantarchitecture_ptr(plant_architecture_ptr) {
-
1742 carbohydrate_pool_molC = 0;
-
1743 phyllochron_counter = 0;
-
1744 isdormant = true;
-
1745 gravitropic_curvature = shoot_params.gravitropic_curvature.val();
-
1746 context_ptr = plant_architecture_ptr->context_ptr;
-
1747
-
1748 if( parent_shoot_ID>=0 ) {
-
1749 plant_architecture_ptr->plant_instances.at(plantID).shoot_tree.at(parent_shoot_ID)->childIDs[(int) parent_node_index] = shoot_ID;
-
1750 }
-
1751
-
1752}
+
1735 fbud.current_fruit_scale_factor = inflorescence_scale_factor_fraction;
+
1736
+
1737 //scale and translate flowers/fruit
+
1738 for( int inflorescence=0; inflorescence<fbud.inflorescence_objIDs.size(); inflorescence++ ) {
+
1739 context_ptr->scaleObjectAboutPoint(fbud.inflorescence_objIDs.at(inflorescence), delta_scale*make_vec3(1,1,1), fbud.inflorescence_bases.at(inflorescence));
+
1740 }
+
1741
+
1742}
+
1743
+
1744void Phytomer::removeLeaf(){
+
1745
+
1746 this->petiole_radii.resize(0);
+
1747// this->petiole_vertices.resize(0);
+
1748 this->petiole_colors.resize(0);
+
1749 this->petiole_length.resize(0);
+
1750 this->leaf_size_max.resize(0);
+
1751 this->leaf_rotation.resize(0);
+
1752 this->leaf_bases.resize(0);
1753
-
1754void Shoot::buildShootPhytomers(float internode_radius, float internode_length, float internode_length_scale_factor_fraction, float leaf_scale_factor_fraction, float radius_taper) {
-
1755
-
1756 for( int i=0; i<current_node_number; i++ ) { //loop over phytomers to build up the shoot
+
1754 context_ptr->deleteObject(flatten(leaf_objIDs));
+
1755 leaf_objIDs.resize(0);
+
1756 leaf_bases.resize(0);
1757
-
1758 //Determine position of internode base
-
1759 vec3 internode_base_position;
-
1760 if( i==0 ){ //first phytomer on shoot
-
1761 internode_base_position = base_position;
-
1762 }else{ // not the first phytomer on the shoot
-
1763 internode_base_position = shoot_internode_vertices.back().back();
-
1764 }
-
1765
-
1766 float taper = 1.f;
-
1767 if( current_node_number>1 ){
-
1768 taper = 1.f-radius_taper*float(i)/float(current_node_number-1);
-
1769 }
-
1770
-
1771 //Adding the phytomer(s) to the shoot
-
1772 int pID = appendPhytomer(internode_radius * taper, internode_length, internode_length_scale_factor_fraction, leaf_scale_factor_fraction);
-
1773
-
1774 }
-
1775
-
1776}
-
1777
-
-
1778bool Shoot::sampleChildShootType(std::string &child_shoot_type_label) const{
-
1779
-
1780 auto shoot_ptr = this;
+
1758 if( build_context_geometry_petiole ) {
+
1759 context_ptr->deleteObject(flatten(petiole_objIDs));
+
1760 petiole_objIDs.resize(0);
+
1761 }
+
1762
+
1763}
+
1764
+
1765bool Phytomer::hasLeaf() const{
+
1766 return !leaf_bases.empty();
+
1767}
+
1768
+
1769float Phytomer::calculateDownstreamLeafArea() const{
+
1770 return parent_shoot_ptr->sumShootLeafArea( shoot_index.x );
+
1771}
+
1772
+
1773Shoot::Shoot(uint plant_ID, int shoot_ID, int parent_shoot_ID, uint parent_node, uint parent_petiole_index, uint rank, const helios::vec3 &shoot_base_position, const AxisRotation &shoot_base_rotation, uint current_node_number,
+
1774 float internode_length_shoot_initial, ShootParameters &shoot_params, std::string shoot_type_label, PlantArchitecture *plant_architecture_ptr) :
+
1775 plantID(plant_ID), ID(shoot_ID), parent_shoot_ID(parent_shoot_ID), parent_node_index(parent_node), parent_petiole_index(parent_petiole_index), rank(rank), base_position(shoot_base_position), base_rotation(shoot_base_rotation), current_node_number(current_node_number), internode_length_max_shoot_initial(internode_length_shoot_initial), shoot_parameters(shoot_params), shoot_type_label(std::move(shoot_type_label)), plantarchitecture_ptr(plant_architecture_ptr) {
+
1776 carbohydrate_pool_molC = 0;
+
1777 phyllochron_counter = 0;
+
1778 isdormant = true;
+
1779 gravitropic_curvature = shoot_params.gravitropic_curvature.val();
+
1780 context_ptr = plant_architecture_ptr->context_ptr;
1781
-
1782 assert( shoot_ptr->shoot_parameters.child_shoot_type_labels.size() == shoot_ptr->shoot_parameters.child_shoot_type_probabilities.size() );
-
1783
-
1784 child_shoot_type_label = "";
+
1782 if( parent_shoot_ID>=0 ) {
+
1783 plant_architecture_ptr->plant_instances.at(plantID).shoot_tree.at(parent_shoot_ID)->childIDs[(int) parent_node_index].push_back(shoot_ID);
+
1784 }
1785
-
1786 if ( shoot_ptr->shoot_parameters.child_shoot_type_labels.size()==0 ) { //if user doesn't specify child shoot types, generate the same type by default
-
1787 child_shoot_type_label = shoot_ptr->shoot_type_label;
-
1788 }else if( shoot_ptr->shoot_parameters.child_shoot_type_labels.size()==1 ){ //if only one child shoot types was specified, use it
-
1789 child_shoot_type_label = shoot_ptr->shoot_parameters.child_shoot_type_labels.at(0);
-
1790 }else{
-
1791 float randf = context_ptr->randu();
-
1792 int shoot_type_index = -1;
-
1793 float cumulative_probability = 0;
-
1794 for (int s = 0; s < shoot_ptr->shoot_parameters.child_shoot_type_labels.size(); s++) {
-
1795 cumulative_probability += shoot_ptr->shoot_parameters.child_shoot_type_probabilities.at(s);
-
1796 if (randf < cumulative_probability ) {
-
1797 shoot_type_index = s;
-
1798 break;
-
1799 }
-
1800 }
-
1801 if (shoot_type_index < 0) {
-
1802 shoot_type_index = shoot_ptr->shoot_parameters.child_shoot_type_labels.size() - 1;
+
1786}
+
1787
+
1788void Shoot::buildShootPhytomers(float internode_radius, float internode_length, float internode_length_scale_factor_fraction, float leaf_scale_factor_fraction, float radius_taper) {
+
1789
+
1790 for( int i=0; i<current_node_number; i++ ) { //loop over phytomers to build up the shoot
+
1791
+
1792 //Determine position of internode base
+
1793 vec3 internode_base_position;
+
1794 if( i==0 ){ //first phytomer on shoot
+
1795 internode_base_position = base_position;
+
1796 }else{ // not the first phytomer on the shoot
+
1797 internode_base_position = shoot_internode_vertices.back().back();
+
1798 }
+
1799
+
1800 float taper = 1.f;
+
1801 if( current_node_number>1 ){
+
1802 taper = 1.f-radius_taper*float(i)/float(current_node_number-1);
1803 }
-
1804 child_shoot_type_label = shoot_ptr->shoot_type_label;
-
1805 if (shoot_type_index >= 0) {
-
1806 child_shoot_type_label = shoot_ptr->shoot_parameters.child_shoot_type_labels.at(shoot_type_index);
-
1807 }
+
1804
+
1805 //Adding the phytomer(s) to the shoot
+
1806 int pID = appendPhytomer(internode_radius * taper, internode_length, internode_length_scale_factor_fraction, leaf_scale_factor_fraction);
+
1807
1808 }
1809
-
1810 bool bud_break = true;
-
1811 if (context_ptr->randu() > plantarchitecture_ptr->shoot_types.at(shoot_ptr->shoot_type_label).vegetative_bud_break_probability.val() ) {
-
1812 bud_break = false;
-
1813// child_shoot_type_label = "";
-
1814 }
+
1810}
+
1811
+
+
1812bool Shoot::sampleChildShootType(std::string &child_shoot_type_label) const{
+
1813
+
1814 auto shoot_ptr = this;
1815
-
1816
-
1817 return bud_break;
-
1818
-
1819}
-
-
1820
-
-
1821uint Shoot::sampleEpicormicShoot( float dt, std::vector<float> &epicormic_positions_fraction ){
-
1822
-
1823 std::string epicormic_shoot_label = plantarchitecture_ptr->plant_instances.at(this->plantID).epicormic_shoot_probability_perlength_per_day.first;
-
1824
-
1825 if( epicormic_shoot_label.empty() ){
-
1826 return 0;
-
1827 }
-
1828
-
1829 float epicormic_probability = plantarchitecture_ptr->plant_instances.at(this->plantID).epicormic_shoot_probability_perlength_per_day.second;
-
1830
-
1831 if( epicormic_probability == 0 ){
-
1832 return 0;
-
1833 }
-
1834
-
1835 uint Nshoots = 0;
-
1836
-
1837 epicormic_positions_fraction.clear();
-
1838
-
1839 float shoot_length = this->calculateShootLength();
-
1840
-
1841 float time = dt;
-
1842 while( time>0 ){
+
1816 assert( shoot_ptr->shoot_parameters.child_shoot_type_labels.size() == shoot_ptr->shoot_parameters.child_shoot_type_probabilities.size() );
+
1817
+
1818 child_shoot_type_label = "";
+
1819
+
1820 if ( shoot_ptr->shoot_parameters.child_shoot_type_labels.size()==0 ) { //if user doesn't specify child shoot types, generate the same type by default
+
1821 child_shoot_type_label = shoot_ptr->shoot_type_label;
+
1822 }else if( shoot_ptr->shoot_parameters.child_shoot_type_labels.size()==1 ){ //if only one child shoot types was specified, use it
+
1823 child_shoot_type_label = shoot_ptr->shoot_parameters.child_shoot_type_labels.at(0);
+
1824 }else{
+
1825 float randf = context_ptr->randu();
+
1826 int shoot_type_index = -1;
+
1827 float cumulative_probability = 0;
+
1828 for (int s = 0; s < shoot_ptr->shoot_parameters.child_shoot_type_labels.size(); s++) {
+
1829 cumulative_probability += shoot_ptr->shoot_parameters.child_shoot_type_probabilities.at(s);
+
1830 if (randf < cumulative_probability ) {
+
1831 shoot_type_index = s;
+
1832 break;
+
1833 }
+
1834 }
+
1835 if (shoot_type_index < 0) {
+
1836 shoot_type_index = shoot_ptr->shoot_parameters.child_shoot_type_labels.size() - 1;
+
1837 }
+
1838 child_shoot_type_label = shoot_ptr->shoot_type_label;
+
1839 if (shoot_type_index >= 0) {
+
1840 child_shoot_type_label = shoot_ptr->shoot_parameters.child_shoot_type_labels.at(shoot_type_index);
+
1841 }
+
1842 }
1843
-
1844 float dta = std::min(time,1.f);
-
1845
-
1846 float shoot_fraction = context_ptr->randu();
-
1847
-
1848 float elevation = fabs(getShootAxisVector(shoot_fraction).z);
+
1844 bool bud_break = true;
+
1845 if (context_ptr->randu() > plantarchitecture_ptr->shoot_types.at(shoot_ptr->shoot_type_label).vegetative_bud_break_probability.val() ) {
+
1846 bud_break = false;
+
1847 }
+
1848
1849
-
1850 bool new_shoot = uint((epicormic_probability*shoot_length*dta*elevation > context_ptr->randu() ));
+
1850 return bud_break;
1851
-
1852 Nshoots += uint(new_shoot);
+
1852}
+
1853
-
1854 if( new_shoot ){
-
1855 epicormic_positions_fraction.push_back(shoot_fraction);
-
1856 }
+
+
1854uint Shoot::sampleEpicormicShoot( float dt, std::vector<float> &epicormic_positions_fraction ){
+
1855
+
1856 std::string epicormic_shoot_label = plantarchitecture_ptr->plant_instances.at(this->plantID).epicormic_shoot_probability_perlength_per_day.first;
1857
-
1858 time -= dta;
-
1859 }
-
1860
-
1861 assert(epicormic_positions_fraction.size() == Nshoots);
-
1862
-
1863 return Nshoots;
-
1864}
-
-
1865
-
-
1866uint PlantArchitecture::addBaseStemShoot(uint plantID, uint current_node_number, const AxisRotation &base_rotation, float internode_radius, float internode_length_max, float internode_length_scale_factor_fraction, float leaf_scale_factor_fraction,
-
1867 float radius_taper, const std::string &shoot_type_label) {
-
1868
-
1869 if( plant_instances.find(plantID) == plant_instances.end() ){
-
1870 helios_runtime_error("ERROR (PlantArchitecture::addBaseStemShoot): Plant with ID of " + std::to_string(plantID) + " does not exist.");
-
1871 }else if( shoot_types.find(shoot_type_label) == shoot_types.end() ) {
-
1872 helios_runtime_error("ERROR (PlantArchitecture::addBaseStemShoot): Shoot type with label of " + shoot_type_label + " does not exist.");
-
1873 }
-
1874
-
1875 auto shoot_tree_ptr = &plant_instances.at(plantID).shoot_tree;
+
1858 if( epicormic_shoot_label.empty() ){
+
1859 return 0;
+
1860 }
+
1861
+
1862 float epicormic_probability = plantarchitecture_ptr->plant_instances.at(this->plantID).epicormic_shoot_probability_perlength_per_day.second;
+
1863
+
1864 if( epicormic_probability == 0 ){
+
1865 return 0;
+
1866 }
+
1867
+
1868 uint Nshoots = 0;
+
1869
+
1870 epicormic_positions_fraction.clear();
+
1871
+
1872 float shoot_length = this->calculateShootLength();
+
1873
+
1874 float time = dt;
+
1875 while( time>0 ){
1876
-
1877 auto shoot_parameters = shoot_types.at(shoot_type_label);
-
1878 validateShootTypes(shoot_parameters);
-
1879
-
1880 if(current_node_number > shoot_parameters.max_nodes.val() ){
-
1881 helios_runtime_error("ERROR (PlantArchitecture::addBaseStemShoot): Cannot add shoot with " + std::to_string(current_node_number) + " nodes since the specified max node number is " + std::to_string(shoot_parameters.max_nodes.val()) + ".");
-
1882 }
-
1883
-
1884 uint shootID = shoot_tree_ptr->size();
-
1885 vec3 base_position = plant_instances.at(plantID).base_position;
+
1877 float dta = std::min(time,1.f);
+
1878
+
1879 float shoot_fraction = context_ptr->randu();
+
1880
+
1881 float elevation = fabs(getShootAxisVector(shoot_fraction).z);
+
1882
+
1883 bool new_shoot = uint((epicormic_probability*shoot_length*dta*elevation > context_ptr->randu() ));
+
1884
+
1885 Nshoots += uint(new_shoot);
1886
-
1887 // Create the new shoot
-
1888 auto* shoot_new = (new Shoot(plantID, shootID, -1, 0, 0, 0, base_position, base_rotation, current_node_number, internode_length_max, shoot_parameters, shoot_type_label, this));
-
1889 shoot_tree_ptr->emplace_back(shoot_new);
+
1887 if( new_shoot ){
+
1888 epicormic_positions_fraction.push_back(shoot_fraction);
+
1889 }
1890
-
1891 // Build phytomer geometry
-
1892 shoot_new->buildShootPhytomers(internode_radius, internode_length_max, internode_length_scale_factor_fraction, leaf_scale_factor_fraction, radius_taper);
+
1891 time -= dta;
+
1892 }
1893
-
1894 return shootID;
+
1894 assert(epicormic_positions_fraction.size() == Nshoots);
1895
-
1896}
+
1896 return Nshoots;
+
1897}
-
1897
-
-
1898uint PlantArchitecture::appendShoot(uint plantID, int parent_shoot_ID, uint current_node_number, const AxisRotation &base_rotation, float internode_radius, float internode_length_max, float internode_length_scale_factor_fraction,
-
1899 float leaf_scale_factor_fraction, float radius_taper, const std::string &shoot_type_label) {
-
1900
-
1901 if( plant_instances.find(plantID) == plant_instances.end() ) {
-
1902 helios_runtime_error("ERROR (PlantArchitecture::appendShoot): Plant with ID of " + std::to_string(plantID) + " does not exist.");
-
1903 }else if( shoot_types.find(shoot_type_label) == shoot_types.end() ) {
-
1904 helios_runtime_error("ERROR (PlantArchitecture::appendShoot): Shoot type with label of " + shoot_type_label + " does not exist.");
-
1905 }
-
1906
-
1907 auto shoot_tree_ptr = &plant_instances.at(plantID).shoot_tree;
-
1908
-
1909 auto shoot_parameters = shoot_types.at(shoot_type_label);
-
1910 validateShootTypes(shoot_parameters);
-
1911
-
1912 if( shoot_tree_ptr->empty() ){
-
1913 helios_runtime_error("ERROR (PlantArchitecture::appendShoot): Cannot append shoot to empty shoot. You must call addBaseStemShoot() first for each plant.");
-
1914 }else if( parent_shoot_ID >= int(shoot_tree_ptr->size()) ){
-
1915 helios_runtime_error("ERROR (PlantArchitecture::appendShoot): Parent with ID of " + std::to_string(parent_shoot_ID) + " does not exist.");
-
1916 }else if(current_node_number > shoot_parameters.max_nodes.val() ){
-
1917 helios_runtime_error("ERROR (PlantArchitecture::appendShoot): Cannot add shoot with " + std::to_string(current_node_number) + " nodes since the specified max node number is " + std::to_string(shoot_parameters.max_nodes.val()) + ".");
-
1918 }else if( shoot_tree_ptr->at(parent_shoot_ID)->phytomers.empty() ){
-
1919 std::cerr << "WARNING (PlantArchitecture::appendShoot): Shoot does not have any phytomers to append." << std::endl;
-
1920 }
-
1921
-
1922 //stop parent shoot from producing new phytomers at the apex
-
1923 shoot_tree_ptr->at(parent_shoot_ID)->shoot_parameters.max_nodes = shoot_tree_ptr->at(parent_shoot_ID)->current_node_number;
-
1924 shoot_tree_ptr->at(parent_shoot_ID)->terminateApicalBud(); //meristem should not keep growing after appending shoot
-
1925
-
1926 //accumulate all the values that will be passed to Shoot constructor
-
1927 int appended_shootID = int(shoot_tree_ptr->size());
-
1928 uint parent_node = shoot_tree_ptr->at(parent_shoot_ID)->current_node_number-1;
-
1929 uint rank = shoot_tree_ptr->at(parent_shoot_ID)->rank;
-
1930 vec3 base_position = interpolateTube(shoot_tree_ptr->at(parent_shoot_ID)->phytomers.back()->getInternodeNodePositions(), 0.9f );
-
1931
-
1932 // Create the new shoot
-
1933 auto * shoot_new = (new Shoot(plantID, appended_shootID, parent_shoot_ID, parent_node, 0, rank, base_position, base_rotation, current_node_number, internode_length_max, shoot_parameters, shoot_type_label, this));
-
1934 shoot_tree_ptr->emplace_back(shoot_new);
-
1935
-
1936 // Build phytomer geometry
-
1937 shoot_new->buildShootPhytomers(internode_radius, internode_length_max, internode_length_scale_factor_fraction, leaf_scale_factor_fraction, radius_taper);
-
1938
-
1939 return appended_shootID;
-
1940
-
1941}
+
1898
+
+
1899uint PlantArchitecture::addBaseStemShoot(uint plantID, uint current_node_number, const AxisRotation &base_rotation, float internode_radius, float internode_length_max, float internode_length_scale_factor_fraction, float leaf_scale_factor_fraction,
+
1900 float radius_taper, const std::string &shoot_type_label) {
+
1901
+
1902 if( plant_instances.find(plantID) == plant_instances.end() ){
+
1903 helios_runtime_error("ERROR (PlantArchitecture::addBaseStemShoot): Plant with ID of " + std::to_string(plantID) + " does not exist.");
+
1904 }else if( shoot_types.find(shoot_type_label) == shoot_types.end() ) {
+
1905 helios_runtime_error("ERROR (PlantArchitecture::addBaseStemShoot): Shoot type with label of " + shoot_type_label + " does not exist.");
+
1906 }
+
1907
+
1908 auto shoot_tree_ptr = &plant_instances.at(plantID).shoot_tree;
+
1909
+
1910 auto shoot_parameters = shoot_types.at(shoot_type_label);
+
1911 validateShootTypes(shoot_parameters);
+
1912
+
1913 if(current_node_number > shoot_parameters.max_nodes.val() ){
+
1914 helios_runtime_error("ERROR (PlantArchitecture::addBaseStemShoot): Cannot add shoot with " + std::to_string(current_node_number) + " nodes since the specified max node number is " + std::to_string(shoot_parameters.max_nodes.val()) + ".");
+
1915 }
+
1916
+
1917 uint shootID = shoot_tree_ptr->size();
+
1918 vec3 base_position = plant_instances.at(plantID).base_position;
+
1919
+
1920 // Create the new shoot
+
1921 auto* shoot_new = (new Shoot(plantID, shootID, -1, 0, 0, 0, base_position, base_rotation, current_node_number, internode_length_max, shoot_parameters, shoot_type_label, this));
+
1922 shoot_tree_ptr->emplace_back(shoot_new);
+
1923
+
1924 // Build phytomer geometry
+
1925 shoot_new->buildShootPhytomers(internode_radius, internode_length_max, internode_length_scale_factor_fraction, leaf_scale_factor_fraction, radius_taper);
+
1926
+
1927 return shootID;
+
1928
+
1929}
-
1942
-
-
1943uint PlantArchitecture::addChildShoot(uint plantID, int parent_shoot_ID, uint parent_node_index, uint current_node_number, const AxisRotation &shoot_base_rotation, float internode_radius, float internode_length_max,
-
1944 float internode_length_scale_factor_fraction, float leaf_scale_factor_fraction, float radius_taper, const std::string &shoot_type_label, uint petiole_index) {
-
1945
-
1946 if( plant_instances.find(plantID) == plant_instances.end() ){
-
1947 helios_runtime_error("ERROR (PlantArchitecture::addChildShoot): Plant with ID of " + std::to_string(plantID) + " does not exist.");
-
1948 }else if( shoot_types.find(shoot_type_label) == shoot_types.end() ) {
-
1949 helios_runtime_error("ERROR (PlantArchitecture::addChildShoot): Shoot type with label of " + shoot_type_label + " does not exist.");
-
1950 }
-
1951
-
1952 auto shoot_tree_ptr = &plant_instances.at(plantID).shoot_tree;
-
1953
-
1954 if(parent_shoot_ID <= -1 || parent_shoot_ID >= shoot_tree_ptr->size() ){
-
1955 helios_runtime_error("ERROR (PlantArchitecture::addChildShoot): Parent with ID of " + std::to_string(parent_shoot_ID) + " does not exist.");
-
1956 }else if(shoot_tree_ptr->at(parent_shoot_ID)->phytomers.size() <= parent_node_index ) {
-
1957 helios_runtime_error("ERROR (PlantArchitecture::addChildShoot): Parent shoot does not have a node " + std::to_string(parent_node_index) + ".");
-
1958 }
-
1959
-
1960 // accumulate all the values that will be passed to Shoot constructor
-
1961 auto shoot_parameters = shoot_types.at(shoot_type_label);
-
1962 validateShootTypes(shoot_parameters);
-
1963 uint parent_rank = (int)shoot_tree_ptr->at(parent_shoot_ID)->rank;
-
1964 int parent_node_count = shoot_tree_ptr->at(parent_shoot_ID)->current_node_number;
-
1965 int childID = int(shoot_tree_ptr->size());
-
1966
-
1967 // Calculate the position of the shoot base
-
1968 auto parent_shoot_ptr = shoot_tree_ptr->at(parent_shoot_ID);
-
1969
-
1970 vec3 shoot_base_position = parent_shoot_ptr->shoot_internode_vertices.at(parent_node_index).back();
+
1930
+
+
1931uint PlantArchitecture::appendShoot(uint plantID, int parent_shoot_ID, uint current_node_number, const AxisRotation &base_rotation, float internode_radius, float internode_length_max, float internode_length_scale_factor_fraction,
+
1932 float leaf_scale_factor_fraction, float radius_taper, const std::string &shoot_type_label) {
+
1933
+
1934 if( plant_instances.find(plantID) == plant_instances.end() ) {
+
1935 helios_runtime_error("ERROR (PlantArchitecture::appendShoot): Plant with ID of " + std::to_string(plantID) + " does not exist.");
+
1936 }else if( shoot_types.find(shoot_type_label) == shoot_types.end() ) {
+
1937 helios_runtime_error("ERROR (PlantArchitecture::appendShoot): Shoot type with label of " + shoot_type_label + " does not exist.");
+
1938 }
+
1939
+
1940 auto shoot_tree_ptr = &plant_instances.at(plantID).shoot_tree;
+
1941
+
1942 auto shoot_parameters = shoot_types.at(shoot_type_label);
+
1943 validateShootTypes(shoot_parameters);
+
1944
+
1945 if( shoot_tree_ptr->empty() ){
+
1946 helios_runtime_error("ERROR (PlantArchitecture::appendShoot): Cannot append shoot to empty shoot. You must call addBaseStemShoot() first for each plant.");
+
1947 }else if( parent_shoot_ID >= int(shoot_tree_ptr->size()) ){
+
1948 helios_runtime_error("ERROR (PlantArchitecture::appendShoot): Parent with ID of " + std::to_string(parent_shoot_ID) + " does not exist.");
+
1949 }else if(current_node_number > shoot_parameters.max_nodes.val() ){
+
1950 helios_runtime_error("ERROR (PlantArchitecture::appendShoot): Cannot add shoot with " + std::to_string(current_node_number) + " nodes since the specified max node number is " + std::to_string(shoot_parameters.max_nodes.val()) + ".");
+
1951 }else if( shoot_tree_ptr->at(parent_shoot_ID)->phytomers.empty() ){
+
1952 std::cerr << "WARNING (PlantArchitecture::appendShoot): Shoot does not have any phytomers to append." << std::endl;
+
1953 }
+
1954
+
1955 //stop parent shoot from producing new phytomers at the apex
+
1956 shoot_tree_ptr->at(parent_shoot_ID)->shoot_parameters.max_nodes = shoot_tree_ptr->at(parent_shoot_ID)->current_node_number;
+
1957 shoot_tree_ptr->at(parent_shoot_ID)->terminateApicalBud(); //meristem should not keep growing after appending shoot
+
1958
+
1959 //accumulate all the values that will be passed to Shoot constructor
+
1960 int appended_shootID = int(shoot_tree_ptr->size());
+
1961 uint parent_node = shoot_tree_ptr->at(parent_shoot_ID)->current_node_number-1;
+
1962 uint rank = shoot_tree_ptr->at(parent_shoot_ID)->rank;
+
1963 vec3 base_position = interpolateTube(shoot_tree_ptr->at(parent_shoot_ID)->phytomers.back()->getInternodeNodePositions(), 0.9f );
+
1964
+
1965 // Create the new shoot
+
1966 auto * shoot_new = (new Shoot(plantID, appended_shootID, parent_shoot_ID, parent_node, 0, rank, base_position, base_rotation, current_node_number, internode_length_max, shoot_parameters, shoot_type_label, this));
+
1967 shoot_tree_ptr->emplace_back(shoot_new);
+
1968
+
1969 // Build phytomer geometry
+
1970 shoot_new->buildShootPhytomers(internode_radius, internode_length_max, internode_length_scale_factor_fraction, leaf_scale_factor_fraction, radius_taper);
1971
-
1972 // Shift the shoot base position outward by the parent internode radius
-
1973 vec3 petiole_axis = parent_shoot_ptr->phytomers.at(parent_node_index)->getPetioleAxisVector(0,petiole_index);
-
1974 shoot_base_position += 0.9f * petiole_axis * parent_shoot_ptr->phytomers.at(parent_node_index)->petiole_radii.at(petiole_index).back();
+
1972 return appended_shootID;
+
1973
+
1974}
+
1975
-
1976 // Create the new shoot
-
1977 auto* shoot_new = (new Shoot(plantID, childID, parent_shoot_ID, parent_node_index, petiole_index, parent_rank + 1, shoot_base_position, shoot_base_rotation, current_node_number, internode_length_max, shoot_parameters, shoot_type_label, this));
-
1978 shoot_tree_ptr->emplace_back(shoot_new);
-
1979
-
1980 // Build phytomer geometry
-
1981 shoot_new->buildShootPhytomers(internode_radius, internode_length_max, internode_length_scale_factor_fraction, leaf_scale_factor_fraction, radius_taper);
-
1982
-
1983 return childID;
+
+
1976uint PlantArchitecture::addChildShoot(uint plantID, int parent_shoot_ID, uint parent_node_index, uint current_node_number, const AxisRotation &shoot_base_rotation, float internode_radius, float internode_length_max,
+
1977 float internode_length_scale_factor_fraction, float leaf_scale_factor_fraction, float radius_taper, const std::string &shoot_type_label, uint petiole_index) {
+
1978
+
1979 if( plant_instances.find(plantID) == plant_instances.end() ){
+
1980 helios_runtime_error("ERROR (PlantArchitecture::addChildShoot): Plant with ID of " + std::to_string(plantID) + " does not exist.");
+
1981 }else if( shoot_types.find(shoot_type_label) == shoot_types.end() ) {
+
1982 helios_runtime_error("ERROR (PlantArchitecture::addChildShoot): Shoot type with label of " + shoot_type_label + " does not exist.");
+
1983 }
1984
-
1985}
-
+
1985 auto shoot_tree_ptr = &plant_instances.at(plantID).shoot_tree;
1986
-
-
1987uint PlantArchitecture::addEpicormicShoot(uint plantID, int parent_shoot_ID, float parent_position_fraction, uint current_node_number, float zenith_perturbation_degrees, float internode_radius, float internode_length_max,
-
1988 float internode_length_scale_factor_fraction, float leaf_scale_factor_fraction, float radius_taper, const std::string &shoot_type_label) {
-
1989
-
1990 if( plant_instances.find(plantID) == plant_instances.end() ){
-
1991 helios_runtime_error("ERROR (PlantArchitecture::addEpicormicShoot): Plant with ID of " + std::to_string(plantID) + " does not exist.");
-
1992 }else if( shoot_types.find(shoot_type_label) == shoot_types.end() ) {
-
1993 helios_runtime_error("ERROR (PlantArchitecture::addEpicormicShoot): Shoot type with label of " + shoot_type_label + " does not exist.");
-
1994 }
-
1995
-
1996 auto &parent_shoot = plant_instances.at(plantID).shoot_tree.at(parent_shoot_ID);
-
1997
-
1998 uint parent_node_index = 0;
-
1999 if( parent_position_fraction>0 ){
-
2000 parent_node_index = std::ceil( parent_position_fraction * float(parent_shoot->phytomers.size()) ) - 1;
-
2001 }
+
1987 if(parent_shoot_ID <= -1 || parent_shoot_ID >= shoot_tree_ptr->size() ){
+
1988 helios_runtime_error("ERROR (PlantArchitecture::addChildShoot): Parent with ID of " + std::to_string(parent_shoot_ID) + " does not exist.");
+
1989 }else if(shoot_tree_ptr->at(parent_shoot_ID)->phytomers.size() <= parent_node_index ) {
+
1990 helios_runtime_error("ERROR (PlantArchitecture::addChildShoot): Parent shoot does not have a node " + std::to_string(parent_node_index) + ".");
+
1991 }
+
1992
+
1993 // accumulate all the values that will be passed to Shoot constructor
+
1994 auto shoot_parameters = shoot_types.at(shoot_type_label);
+
1995 validateShootTypes(shoot_parameters);
+
1996 uint parent_rank = (int)shoot_tree_ptr->at(parent_shoot_ID)->rank;
+
1997 int parent_node_count = shoot_tree_ptr->at(parent_shoot_ID)->current_node_number;
+
1998 int childID = int(shoot_tree_ptr->size());
+
1999
+
2000 // Calculate the position of the shoot base
+
2001 auto parent_shoot_ptr = shoot_tree_ptr->at(parent_shoot_ID);
2002
-
2003 vec3 petiole_axis = plant_instances.at(plantID).shoot_tree.at(parent_shoot_ID)->phytomers.at(parent_node_index)->getPetioleAxisVector(0,0);
+
2003 vec3 shoot_base_position = parent_shoot_ptr->shoot_internode_vertices.at(parent_node_index).back();
2004
-
2005 //\todo Figuring out how to set this correctly to make the shoot vertical, which avoids having to write a child shoot function.
-
2006 AxisRotation base_rotation = make_AxisRotation(0, acos_safe(petiole_axis.z), 0);
-
2007
-
2008 return addChildShoot(plantID, parent_shoot_ID, parent_node_index, current_node_number, base_rotation, internode_radius, internode_length_max, internode_length_scale_factor_fraction, leaf_scale_factor_fraction, radius_taper, shoot_type_label, 0);
-
2009
-
2010}
-
-
2011
-
2012void PlantArchitecture::validateShootTypes( ShootParameters &shoot_parameters ) const{
-
2013
-
2014 assert( shoot_parameters.child_shoot_type_probabilities.size() == shoot_parameters.child_shoot_type_labels.size() );
+
2005 // Shift the shoot base position outward by the parent internode radius
+
2006 vec3 petiole_axis = parent_shoot_ptr->phytomers.at(parent_node_index)->getPetioleAxisVector(0,petiole_index);
+
2007 shoot_base_position += 0.9f * petiole_axis * parent_shoot_ptr->phytomers.at(parent_node_index)->getInternodeRadius(1.f);
+
2008
+
2009 // Create the new shoot
+
2010 auto* shoot_new = (new Shoot(plantID, childID, parent_shoot_ID, parent_node_index, petiole_index, parent_rank + 1, shoot_base_position, shoot_base_rotation, current_node_number, internode_length_max, shoot_parameters, shoot_type_label, this));
+
2011 shoot_tree_ptr->emplace_back(shoot_new);
+
2012
+
2013 // Build phytomer geometry
+
2014 shoot_new->buildShootPhytomers(internode_radius, internode_length_max, internode_length_scale_factor_fraction, leaf_scale_factor_fraction, radius_taper);
2015
-
2016 for( int ind = shoot_parameters.child_shoot_type_labels.size()-1; ind>=0; ind-- ){
-
2017 if( shoot_types.find(shoot_parameters.child_shoot_type_labels.at(ind)) == shoot_types.end() ){
-
2018 shoot_parameters.child_shoot_type_labels.erase(shoot_parameters.child_shoot_type_labels.begin()+ind);
-
2019 shoot_parameters.child_shoot_type_probabilities.erase(shoot_parameters.child_shoot_type_probabilities.begin()+ind);
-
2020 }
-
2021 }
+
2016 return childID;
+
2017
+
2018}
+
+
2019
+
+
2020uint PlantArchitecture::addEpicormicShoot(uint plantID, int parent_shoot_ID, float parent_position_fraction, uint current_node_number, float zenith_perturbation_degrees, float internode_radius, float internode_length_max,
+
2021 float internode_length_scale_factor_fraction, float leaf_scale_factor_fraction, float radius_taper, const std::string &shoot_type_label) {
2022
-
2023}
-
2024
-
-
2025int PlantArchitecture::appendPhytomerToShoot(uint plantID, uint shootID, const PhytomerParameters &phytomer_parameters, float internode_radius, float internode_length_max, float internode_length_scale_factor_fraction, float leaf_scale_factor_fraction) {
-
2026
-
2027 if( plant_instances.find(plantID) == plant_instances.end() ){
-
2028 helios_runtime_error("ERROR (PlantArchitecture::appendPhytomerToShoot): Plant with ID of " + std::to_string(plantID) + " does not exist.");
-
2029 }
+
2023 if( plant_instances.find(plantID) == plant_instances.end() ){
+
2024 helios_runtime_error("ERROR (PlantArchitecture::addEpicormicShoot): Plant with ID of " + std::to_string(plantID) + " does not exist.");
+
2025 }else if( shoot_types.find(shoot_type_label) == shoot_types.end() ) {
+
2026 helios_runtime_error("ERROR (PlantArchitecture::addEpicormicShoot): Shoot type with label of " + shoot_type_label + " does not exist.");
+
2027 }
+
2028
+
2029 auto &parent_shoot = plant_instances.at(plantID).shoot_tree.at(parent_shoot_ID);
2030
-
2031 auto shoot_tree_ptr = &plant_instances.at(plantID).shoot_tree;
-
2032
-
2033 if(shootID >= shoot_tree_ptr->size() ){
-
2034 helios_runtime_error("ERROR (PlantArchitecture::appendPhytomerToShoot): Parent with ID of " + std::to_string(shootID) + " does not exist.");
-
2035 }
-
2036
-
2037 auto current_shoot_ptr = plant_instances.at(plantID).shoot_tree.at(shootID);
-
2038
-
2039 //The base position of this phytomer is the last vertex position of the prior phytomer on the shoot
-
2040 vec3 base_position = current_shoot_ptr->shoot_internode_vertices.back().back();
-
2041 //The base rotation of this phytomer is the base rotation of the current shoot (the phytomer will be further rotated in the Phytomer constructor)
-
2042 AxisRotation base_rotation = current_shoot_ptr->base_rotation;
-
2043
-
2044 int pID = current_shoot_ptr->appendPhytomer(internode_radius, internode_length_max, internode_length_scale_factor_fraction, leaf_scale_factor_fraction);
-
2045
-
2046 current_shoot_ptr->current_node_number ++;
-
2047
-
2048 for( auto &phytomers: current_shoot_ptr->phytomers ){
-
2049 phytomers->shoot_index.y = current_shoot_ptr->current_node_number;
-
2050 }
-
2051
-
2052 //If this shoot reached max nodes, add a terminal floral bud if max_terminal_floral_buds > 0
-
2053 if( current_shoot_ptr->current_node_number == current_shoot_ptr->shoot_parameters.max_nodes.val() ){
-
2054 if ( !current_shoot_ptr->shoot_parameters.flowers_require_dormancy && current_shoot_ptr->shoot_parameters.max_terminal_floral_buds.val() > 0) {
-
2055 current_shoot_ptr->addTerminalFloralBud();
-
2056 BudState state;
-
2057 if( current_shoot_ptr->shoot_parameters.phytomer_parameters.inflorescence.flower_prototype_function!=nullptr ){
-
2058 state = BUD_FLOWER_CLOSED;
-
2059 }else if( current_shoot_ptr->shoot_parameters.phytomer_parameters.inflorescence.fruit_prototype_function!=nullptr ) {
-
2060 state = BUD_FRUITING;
-
2061 }else{
-
2062 return pID;
-
2063 }
-
2064 for( auto &fbuds : current_shoot_ptr->phytomers.back()->floral_buds ) {
-
2065 for( auto &fbud : fbuds ) {
-
2066 if( fbud.isterminal ) {
-
2067 fbud.state = state;
-
2068 current_shoot_ptr->phytomers.back()->updateInflorescence(fbud);
-
2069 }
-
2070 }
-
2071 }
-
2072 }
-
2073 }
-
2074
-
2075 return pID;
-
2076
-
2077}
-
-
2078
-
-
2079void PlantArchitecture::enableEpicormicChildShoots(uint plantID, const std::string &epicormic_shoot_type_label, float epicormic_probability_perlength_perday) {
-
2080
-
2081 if(shoot_types.find(epicormic_shoot_type_label) == shoot_types.end() ){
-
2082 helios_runtime_error("ERROR (PlantArchitecture::enableEpicormicChildShoots): Shoot type with label of " + epicormic_shoot_type_label + " does not exist.");
-
2083 }else if( epicormic_probability_perlength_perday<0 ){
-
2084 helios_runtime_error("ERROR (PlantArchitecture::enableEpicormicChildShoots): Epicormic probability must be greater than or equal to zero.");
-
2085 }else if( plant_instances.find(plantID) == plant_instances.end() ){
-
2086 helios_runtime_error("ERROR (PlantArchitecture::enableEpicormicChildShoots): Plant with ID of " + std::to_string(plantID) + " does not exist.");
-
2087 }
-
2088
-
2089 plant_instances.at(plantID).epicormic_shoot_probability_perlength_per_day = std::make_pair(epicormic_shoot_type_label, epicormic_probability_perlength_perday);
-
2090
-
2091}
-
-
2092
-
-
2093void PlantArchitecture::disableInternodeContextBuild(){
-
2094 build_context_geometry_internode = false;
-
2095}
-
-
2096
-
-
2097void PlantArchitecture::disablePetioleContextBuild(){
-
2098 build_context_geometry_petiole = false;
-
2099}
-
-
2100
-
-
2101void PlantArchitecture::disablePeduncleContextBuild(){
-
2102 build_context_geometry_peduncle = false;
-
2103}
+
2031 uint parent_node_index = 0;
+
2032 if( parent_position_fraction>0 ){
+
2033 parent_node_index = std::ceil( parent_position_fraction * float(parent_shoot->phytomers.size()) ) - 1;
+
2034 }
+
2035
+
2036 vec3 petiole_axis = plant_instances.at(plantID).shoot_tree.at(parent_shoot_ID)->phytomers.at(parent_node_index)->getPetioleAxisVector(0,0);
+
2037
+
2038 //\todo Figuring out how to set this correctly to make the shoot vertical, which avoids having to write a child shoot function.
+
2039 AxisRotation base_rotation = make_AxisRotation(0, acos_safe(petiole_axis.z), 0);
+
2040
+
2041 return addChildShoot(plantID, parent_shoot_ID, parent_node_index, current_node_number, base_rotation, internode_radius, internode_length_max, internode_length_scale_factor_fraction, leaf_scale_factor_fraction, radius_taper, shoot_type_label, 0);
+
2042
+
2043}
+
2044
+
2045void PlantArchitecture::validateShootTypes( ShootParameters &shoot_parameters ) const{
+
2046
+
2047 assert( shoot_parameters.child_shoot_type_probabilities.size() == shoot_parameters.child_shoot_type_labels.size() );
+
2048
+
2049 for( int ind = shoot_parameters.child_shoot_type_labels.size()-1; ind>=0; ind-- ){
+
2050 if( shoot_types.find(shoot_parameters.child_shoot_type_labels.at(ind)) == shoot_types.end() ){
+
2051 shoot_parameters.child_shoot_type_labels.erase(shoot_parameters.child_shoot_type_labels.begin()+ind);
+
2052 shoot_parameters.child_shoot_type_probabilities.erase(shoot_parameters.child_shoot_type_probabilities.begin()+ind);
+
2053 }
+
2054 }
+
2055
+
2056}
+
2057
+
+
2058int PlantArchitecture::appendPhytomerToShoot(uint plantID, uint shootID, const PhytomerParameters &phytomer_parameters, float internode_radius, float internode_length_max, float internode_length_scale_factor_fraction, float leaf_scale_factor_fraction) {
+
2059
+
2060 if( plant_instances.find(plantID) == plant_instances.end() ){
+
2061 helios_runtime_error("ERROR (PlantArchitecture::appendPhytomerToShoot): Plant with ID of " + std::to_string(plantID) + " does not exist.");
+
2062 }
+
2063
+
2064 auto shoot_tree_ptr = &plant_instances.at(plantID).shoot_tree;
+
2065
+
2066 if(shootID >= shoot_tree_ptr->size() ){
+
2067 helios_runtime_error("ERROR (PlantArchitecture::appendPhytomerToShoot): Parent with ID of " + std::to_string(shootID) + " does not exist.");
+
2068 }
+
2069
+
2070 auto current_shoot_ptr = plant_instances.at(plantID).shoot_tree.at(shootID);
+
2071
+
2072 int pID = current_shoot_ptr->appendPhytomer(internode_radius, internode_length_max, internode_length_scale_factor_fraction, leaf_scale_factor_fraction);
+
2073
+
2074 current_shoot_ptr->current_node_number ++;
+
2075
+
2076 for( auto &phytomers: current_shoot_ptr->phytomers ){
+
2077 phytomers->shoot_index.y = current_shoot_ptr->current_node_number;
+
2078 }
+
2079
+
2080 //If this shoot reached max nodes, add a terminal floral bud if max_terminal_floral_buds > 0
+
2081 if( current_shoot_ptr->current_node_number == current_shoot_ptr->shoot_parameters.max_nodes.val() ){
+
2082 if ( !current_shoot_ptr->shoot_parameters.flowers_require_dormancy && current_shoot_ptr->shoot_parameters.max_terminal_floral_buds.val() > 0) {
+
2083 current_shoot_ptr->addTerminalFloralBud();
+
2084 BudState state;
+
2085 if( current_shoot_ptr->shoot_parameters.phytomer_parameters.inflorescence.flower_prototype_function!=nullptr ){
+
2086 state = BUD_FLOWER_CLOSED;
+
2087 }else if( current_shoot_ptr->shoot_parameters.phytomer_parameters.inflorescence.fruit_prototype_function!=nullptr ) {
+
2088 state = BUD_FRUITING;
+
2089 }else{
+
2090 return pID;
+
2091 }
+
2092 for( auto &fbuds : current_shoot_ptr->phytomers.back()->floral_buds ) {
+
2093 for( auto &fbud : fbuds ) {
+
2094 if( fbud.isterminal ) {
+
2095 fbud.state = state;
+
2096 current_shoot_ptr->phytomers.back()->updateInflorescence(fbud);
+
2097 }
+
2098 }
+
2099 }
+
2100 }
+
2101 }
+
2102
+
2103 return pID;
2104
-
-
2105void PlantArchitecture::enableGroundClipping( float ground_height ){
-
2106 ground_clipping_height = ground_height;
-
2107}
+
2105}
+
2106
+
+
2107void PlantArchitecture::enableEpicormicChildShoots(uint plantID, const std::string &epicormic_shoot_type_label, float epicormic_probability_perlength_perday) {
2108
-
2109void PlantArchitecture::incrementPhytomerInternodeGirth(uint plantID, uint shootID, uint node_number, float girth_change, bool update_context_geometry) {
-
2110
-
2111 if( girth_change==0 ){
-
2112 return;
-
2113 }
-
2114
-
2115 if( plant_instances.find(plantID) == plant_instances.end() ){
-
2116 helios_runtime_error("ERROR (PlantArchitecture::incrementPhytomerInternodeGirth): Plant with ID of " + std::to_string(plantID) + " does not exist.");
-
2117 }
+
2109 if(shoot_types.find(epicormic_shoot_type_label) == shoot_types.end() ){
+
2110 helios_runtime_error("ERROR (PlantArchitecture::enableEpicormicChildShoots): Shoot type with label of " + epicormic_shoot_type_label + " does not exist.");
+
2111 }else if( epicormic_probability_perlength_perday<0 ){
+
2112 helios_runtime_error("ERROR (PlantArchitecture::enableEpicormicChildShoots): Epicormic probability must be greater than or equal to zero.");
+
2113 }else if( plant_instances.find(plantID) == plant_instances.end() ){
+
2114 helios_runtime_error("ERROR (PlantArchitecture::enableEpicormicChildShoots): Plant with ID of " + std::to_string(plantID) + " does not exist.");
+
2115 }
+
2116
+
2117 plant_instances.at(plantID).epicormic_shoot_probability_perlength_per_day = std::make_pair(epicormic_shoot_type_label, epicormic_probability_perlength_perday);
2118
-
2119 auto shoot = plant_instances.at(plantID).shoot_tree.at(shootID);
+
2119}
+
2120
-
2121 if( shootID>=plant_instances.at(plantID).shoot_tree.size() ){
-
2122 helios_runtime_error("ERROR (PlantArchitecture::incrementPhytomerInternodeGirth): Shoot with ID of " + std::to_string(shootID) + " does not exist.");
-
2123 }else if( node_number>=shoot->current_node_number ){
-
2124 helios_runtime_error("ERROR (PlantArchitecture::incrementPhytomerInternodeGirth): Cannot scale internode " + std::to_string(node_number) + " because there are only " + std::to_string(shoot->current_node_number) + " nodes in this shoot.");
-
2125 }
-
2126
-
2127 auto phytomer = shoot->phytomers.at(node_number);
+
+
2121void PlantArchitecture::disableInternodeContextBuild(){
+
2122 build_context_geometry_internode = false;
+
2123}
+
+
2124
+
+
2125void PlantArchitecture::disablePetioleContextBuild(){
+
2126 build_context_geometry_petiole = false;
+
2127}
+
2128
-
2129 // Scale the girth of the internode
-
2130 auto &segment = shoot->shoot_internode_radii.at(node_number);
-
2131 for( float &radius : segment ) {
+
+
2129void PlantArchitecture::disablePeduncleContextBuild(){
+
2130 build_context_geometry_peduncle = false;
+
2131}
+
2132
-
2133 float taper = 1.f - 0.5f * float(node_number) / float(shoot->current_node_number);
-
2134
-
2135 if (radius * girth_change > phytomer->internode_radius_max) {
-
2136 girth_change = phytomer->internode_radius_max / radius;
-
2137 radius = phytomer->internode_radius_max;
-
2138 }else if( girth_change>1.f ) {
-
2139 radius *= 1.f + (girth_change - 1.f) * taper;
-
2140 }else{
-
2141 radius *= girth_change;
-
2142 }
-
2143
-
2144 }
-
2145
-
2146
-
2147 if( update_context_geometry ){
-
2148 context_ptr->setTubeRadii(shoot->internode_tube_objID, flatten(shoot->shoot_internode_radii) );
-
2149 }
-
2150
-
2151}
-
2152
-
2153void PlantArchitecture::updateShootInternodeLength(uint plantID, uint shootID, float dt, bool update_context_geometry) {
-
2154
-
2155 if (plant_instances.find(plantID) == plant_instances.end()) {
-
2156 helios_runtime_error("ERROR (PlantArchitecture::updateShootInternodeLength): Plant with ID of " + std::to_string(plantID) + " does not exist.");
-
2157 }
-
2158
-
2159 auto current_shoot = plant_instances.at(plantID).shoot_tree.at(shootID);
-
2160
-
2161 if (shootID >= plant_instances.at(plantID).shoot_tree.size()) {
-
2162 helios_runtime_error("ERROR (PlantArchitecture::updateShootInternodeLength): Shoot with ID of " + std::to_string(shootID) + " does not exist.");
-
2163 }
-
2164 if (dt < 0 || dt > 1) {
-
2165 std::cerr << "WARNING (PlantArchitecture::updateShootInternodeLength): Internode scaling factor was outside the range of 0 to 1. No scaling was applied." << std::endl;
-
2166 return;
-
2167 }
-
2168
-
2169 std::vector<vec3> internode_vertices_flat = flatten(current_shoot->shoot_internode_vertices);
-
2170
-
2171 uint Nphytomers = current_shoot->shoot_internode_vertices.size();
-
2172
-
2173 int segment_global = 0;
-
2174 for (int p = 0; p < Nphytomers; p++) {
-
2175
-
2176 auto phytomer = current_shoot->phytomers.at(p);
-
2177
-
2178 float dL_internode = dt * current_shoot->shoot_parameters.elongation_rate.val() * phytomer->internode_length_max;
-
2179 float length_scale = fmin(1.f, (phytomer->getInternodeLength() + dL_internode) / phytomer->internode_length_max);
+
+
2133void PlantArchitecture::enableGroundClipping( float ground_height ){
+
2134 ground_clipping_height = ground_height;
+
2135}
+
+
2136
+
2137//void PlantArchitecture::incrementPhytomerInternodeGirth(uint plantID, uint shootID, uint node_number, float girth_change, bool update_context_geometry) {
+
2138//
+
2139// if( girth_change==0 ){
+
2140// return;
+
2141// }
+
2142//
+
2143// if( plant_instances.find(plantID) == plant_instances.end() ){
+
2144// helios_runtime_error("ERROR (PlantArchitecture::incrementPhytomerInternodeGirth): Plant with ID of " + std::to_string(plantID) + " does not exist.");
+
2145// }
+
2146//
+
2147// auto shoot = plant_instances.at(plantID).shoot_tree.at(shootID);
+
2148//
+
2149// if( shootID>=plant_instances.at(plantID).shoot_tree.size() ){
+
2150// helios_runtime_error("ERROR (PlantArchitecture::incrementPhytomerInternodeGirth): Shoot with ID of " + std::to_string(shootID) + " does not exist.");
+
2151// }else if( node_number>=shoot->current_node_number ){
+
2152// helios_runtime_error("ERROR (PlantArchitecture::incrementPhytomerInternodeGirth): Cannot scale internode " + std::to_string(node_number) + " because there are only " + std::to_string(shoot->current_node_number) + " nodes in this shoot.");
+
2153// }
+
2154//
+
2155// auto phytomer = shoot->phytomers.at(node_number);
+
2156//
+
2157// // Scale the girth of the internode
+
2158// auto &segment = shoot->shoot_internode_radii.at(node_number);
+
2159// for( float &radius : segment ) {
+
2160//
+
2161// float taper = 1.f - 0.5f * float(node_number) / float(shoot->current_node_number);
+
2162//
+
2163// if (radius * girth_change > phytomer->internode_radius_max) {
+
2164// girth_change = phytomer->internode_radius_max / radius;
+
2165// radius = phytomer->internode_radius_max;
+
2166// }else if( girth_change>1.f ) {
+
2167// radius *= 1.f + (girth_change - 1.f) * taper;
+
2168// }else{
+
2169// radius *= girth_change;
+
2170// }
+
2171//
+
2172// }
+
2173//
+
2174//
+
2175// if( update_context_geometry ){
+
2176// context_ptr->setTubeRadii(shoot->internode_tube_objID, flatten(shoot->shoot_internode_radii) );
+
2177// }
+
2178//
+
2179//}
2180
-
2181// std::cout << "Phytomer " << p << " length scale: " << length_scale << " " << dL_internode << " " << phytomer->getInternodeLength() << std::endl;
+
2181void PlantArchitecture::incrementPhytomerInternodeGirth(uint plantID, uint shootID, uint node_number, bool update_context_geometry) {
2182
-
2183 for (int s = 0; s < current_shoot->shoot_internode_vertices.at(p).size(); s++) {
-
2184
-
2185 if (p == 0 && s == 0) { //skip first node
-
2186 segment_global++;
-
2187 continue;
-
2188 }
-
2189
-
2190 vec3 central_axis = (internode_vertices_flat.at(segment_global) - internode_vertices_flat.at(segment_global - 1));
-
2191 float current_length = central_axis.magnitude();
-
2192 central_axis = central_axis / current_length;
-
2193 vec3 dL = central_axis * current_length * (1.f - length_scale);
+
2183 if( plant_instances.find(plantID) == plant_instances.end() ){
+
2184 helios_runtime_error("ERROR (PlantArchitecture::incrementPhytomerInternodeGirth): Plant with ID of " + std::to_string(plantID) + " does not exist.");
+
2185 }
+
2186
+
2187 auto shoot = plant_instances.at(plantID).shoot_tree.at(shootID);
+
2188
+
2189 if( shootID>=plant_instances.at(plantID).shoot_tree.size() ){
+
2190 helios_runtime_error("ERROR (PlantArchitecture::incrementPhytomerInternodeGirth): Shoot with ID of " + std::to_string(shootID) + " does not exist.");
+
2191 }else if( node_number>=shoot->current_node_number ){
+
2192 helios_runtime_error("ERROR (PlantArchitecture::incrementPhytomerInternodeGirth): Cannot scale internode " + std::to_string(node_number) + " because there are only " + std::to_string(shoot->current_node_number) + " nodes in this shoot.");
+
2193 }
2194
-
2195 std::cout << "(" << p << "," << s << ") " << internode_vertices_flat.at(segment_global) << " " << dL << std::endl;
+
2195 auto phytomer = shoot->phytomers.at(node_number);
2196
-
2197 for (int i_downstream = segment_global; i_downstream < internode_vertices_flat.size(); i_downstream++) {
+
2197 float leaf_area = phytomer->calculateDownstreamLeafArea();
2198
-
2199 internode_vertices_flat.at(i_downstream) += dL;
-
2200
-
2201 }
-
2202
-
2203 segment_global++;
-
2204 }
-
2205 }
-
2206
-
2207 segment_global = 0;
-
2208 for (int p = 0; p < Nphytomers; p++) {
-
2209 for (int s = 0; s < current_shoot->shoot_internode_vertices.at(p).size(); s++) {
-
2210 if (p == 0 && s == 0) { //skip first node
-
2211 segment_global++;
-
2212 continue;
-
2213 }
-
2214 current_shoot->shoot_internode_vertices.at(p).at(s) = internode_vertices_flat.at(segment_global);
-
2215 segment_global++;
-
2216 }
-
2217 }
+
2199 float internode_area = phytomer->parent_shoot_ptr->shoot_parameters.girth_area_factor.val()*leaf_area*1e-4;
+
2200 phytomer->parent_shoot_ptr->shoot_parameters.girth_area_factor.resample();
+
2201
+
2202 float phytomer_radius = sqrtf(internode_area / M_PI);
+
2203
+
2204 auto &segment = shoot->shoot_internode_radii.at(node_number);
+
2205 for( float &radius : segment ) {
+
2206 if( phytomer_radius > radius ) { //radius should only increase
+
2207 radius = phytomer_radius;
+
2208 }
+
2209 }
+
2210
+
2211 if( update_context_geometry ){
+
2212 context_ptr->setTubeRadii(shoot->internode_tube_objID, flatten(shoot->shoot_internode_radii) );
+
2213 }
+
2214
+
2215}
+
2216
+
2217void PlantArchitecture::setPhytomerLeafScale(uint plantID, uint shootID, uint node_number, float leaf_scale_factor_fraction) {
2218
-
2219 current_shoot->updateShootNodes(update_context_geometry);
-
2220
-
2221}
+
2219 if( plant_instances.find(plantID) == plant_instances.end() ){
+
2220 helios_runtime_error("ERROR (PlantArchitecture::setPhytomerLeafScale): Plant with ID of " + std::to_string(plantID) + " does not exist.");
+
2221 }
2222
-
2223void PlantArchitecture::setPhytomerLeafScale(uint plantID, uint shootID, uint node_number, float leaf_scale_factor_fraction) {
+
2223 auto parent_shoot = plant_instances.at(plantID).shoot_tree.at(shootID);
2224
-
2225 if( plant_instances.find(plantID) == plant_instances.end() ){
-
2226 helios_runtime_error("ERROR (PlantArchitecture::setPhytomerLeafScale): Plant with ID of " + std::to_string(plantID) + " does not exist.");
-
2227 }
-
2228
-
2229 auto parent_shoot = plant_instances.at(plantID).shoot_tree.at(shootID);
-
2230
-
2231 if( shootID>=plant_instances.at(plantID).shoot_tree.size() ){
-
2232 helios_runtime_error("ERROR (PlantArchitecture::setPhytomerLeafScale): Shoot with ID of " + std::to_string(shootID) + " does not exist.");
-
2233 }else if( node_number>=parent_shoot->current_node_number ){
-
2234 helios_runtime_error("ERROR (PlantArchitecture::setPhytomerLeafScale): Cannot scale leaf " + std::to_string(node_number) + " because there are only " + std::to_string(parent_shoot->current_node_number) + " nodes in this shoot.");
-
2235 }
-
2236 if(leaf_scale_factor_fraction < 0 || leaf_scale_factor_fraction > 1 ){
-
2237 std::cerr << "WARNING (PlantArchitecture::setPhytomerLeafScale): Leaf scaling factor was outside the range of 0 to 1. No scaling was applied." << std::endl;
-
2238 return;
-
2239 }
+
2225 if( shootID>=plant_instances.at(plantID).shoot_tree.size() ){
+
2226 helios_runtime_error("ERROR (PlantArchitecture::setPhytomerLeafScale): Shoot with ID of " + std::to_string(shootID) + " does not exist.");
+
2227 }else if( node_number>=parent_shoot->current_node_number ){
+
2228 helios_runtime_error("ERROR (PlantArchitecture::setPhytomerLeafScale): Cannot scale leaf " + std::to_string(node_number) + " because there are only " + std::to_string(parent_shoot->current_node_number) + " nodes in this shoot.");
+
2229 }
+
2230 if(leaf_scale_factor_fraction < 0 || leaf_scale_factor_fraction > 1 ){
+
2231 std::cerr << "WARNING (PlantArchitecture::setPhytomerLeafScale): Leaf scaling factor was outside the range of 0 to 1. No scaling was applied." << std::endl;
+
2232 return;
+
2233 }
+
2234
+
2235 parent_shoot->phytomers.at(node_number)->setLeafScaleFraction(leaf_scale_factor_fraction);
+
2236
+
2237}
+
2238
+
2239void PlantArchitecture::setPlantBasePosition(uint plantID, const helios::vec3 &base_position) {
2240
-
2241 parent_shoot->phytomers.at(node_number)->setLeafScaleFraction(leaf_scale_factor_fraction);
-
2242
-
2243}
+
2241 if( plant_instances.find(plantID) == plant_instances.end() ){
+
2242 helios_runtime_error("ERROR (PlantArchitecture::setPlantBasePosition): Plant with ID of " + std::to_string(plantID) + " does not exist.");
+
2243 }
2244
-
2245void PlantArchitecture::setPlantBasePosition(uint plantID, const helios::vec3 &base_position) {
+
2245 plant_instances.at(plantID).base_position = base_position;
2246
-
2247 if( plant_instances.find(plantID) == plant_instances.end() ){
-
2248 helios_runtime_error("ERROR (PlantArchitecture::setPlantBasePosition): Plant with ID of " + std::to_string(plantID) + " does not exist.");
-
2249 }
-
2250
-
2251 plant_instances.at(plantID).base_position = base_position;
-
2252
-
2253 //\todo Does not work after shoots have been added to the plant.
-
2254 if( !plant_instances.at(plantID).shoot_tree.empty() ){
-
2255 std::cerr << "WARNING (PlantArchitecture::setPlantBasePosition): This function does not work after shoots have been added to the plant." << std::endl;
-
2256 }
-
2257
-
2258}
-
2259
-
2260helios::vec3 PlantArchitecture::getPlantBasePosition(uint plantID) const{
-
2261 if( plant_instances.find(plantID) == plant_instances.end() ){
-
2262 helios_runtime_error("ERROR (PlantArchitecture::setPlantBasePosition): Plant with ID of " + std::to_string(plantID) + " does not exist.");
-
2263 }else if( plant_instances.at(plantID).shoot_tree.empty() ){
-
2264 helios_runtime_error("ERROR (PlantArchitecture::setPlantBasePosition): Plant with ID of " + std::to_string(plantID) + " has no shoots, so could not get a base position.");
-
2265 }
-
2266 return plant_instances.at(plantID).base_position;
-
2267}
+
2247 //\todo Does not work after shoots have been added to the plant.
+
2248 if( !plant_instances.at(plantID).shoot_tree.empty() ){
+
2249 std::cerr << "WARNING (PlantArchitecture::setPlantBasePosition): This function does not work after shoots have been added to the plant." << std::endl;
+
2250 }
+
2251
+
2252}
+
2253
+
2254helios::vec3 PlantArchitecture::getPlantBasePosition(uint plantID) const{
+
2255 if( plant_instances.find(plantID) == plant_instances.end() ){
+
2256 helios_runtime_error("ERROR (PlantArchitecture::setPlantBasePosition): Plant with ID of " + std::to_string(plantID) + " does not exist.");
+
2257 }else if( plant_instances.at(plantID).shoot_tree.empty() ){
+
2258 helios_runtime_error("ERROR (PlantArchitecture::setPlantBasePosition): Plant with ID of " + std::to_string(plantID) + " has no shoots, so could not get a base position.");
+
2259 }
+
2260 return plant_instances.at(plantID).base_position;
+
2261}
+
2262
+
+
2263float PlantArchitecture::sumPlantLeafArea(uint plantID) const{
+
2264
+
2265 if( plantID>=plant_instances.size() ){
+
2266 helios_runtime_error("ERROR (PlantArchitecture::sumPlantLeafArea): Plant with ID of " + std::to_string(plantID) + " does not exist.");
+
2267 }
2268
-
2269void PlantArchitecture::setPlantAge(uint plantID, float a_current_age) {
-
2270 //\todo
-
2271// this->current_age = current_age;
-
2272}
-
2273
-
2274float PlantArchitecture::getPlantAge(uint plantID) const{
-
2275 if( plant_instances.find(plantID) == plant_instances.end() ){
-
2276 helios_runtime_error("ERROR (PlantArchitecture::setPlantAge): Plant with ID of " + std::to_string(plantID) + " does not exist.");
-
2277 }else if( plant_instances.at(plantID).shoot_tree.empty() ){
-
2278 helios_runtime_error("ERROR (PlantArchitecture::setPlantAge): Plant with ID of " + std::to_string(plantID) + " has no shoots, so could not get a base position.");
-
2279 }
-
2280 return plant_instances.at(plantID).current_age;
-
2281}
-
2282
-
2283void PlantArchitecture::harvestPlant(uint plantID){
-
2284
+
2269 std::vector<uint> leaf_objIDs = getPlantLeafObjectIDs(plantID);
+
2270
+
2271 float area = 0;
+
2272 for( uint objID : leaf_objIDs ){
+
2273 area += context_ptr->getObjectArea(objID);
+
2274 }
+
2275
+
2276 return area;
+
2277}
+
+
2278
+
2279void PlantArchitecture::setPlantAge(uint plantID, float a_current_age) {
+
2280 //\todo
+
2281// this->current_age = current_age;
+
2282}
+
2283
+
2284float PlantArchitecture::getPlantAge(uint plantID) const{
2285 if( plant_instances.find(plantID) == plant_instances.end() ){
-
2286 helios_runtime_error("ERROR (PlantArchitecture::harvestPlant): Plant with ID of " + std::to_string(plantID) + " does not exist.");
-
2287 }
-
2288
-
2289 for( auto& shoot: plant_instances.at(plantID).shoot_tree ){
-
2290 for( auto& phytomer: shoot->phytomers ){
-
2291
-
2292 for( auto& petiole : phytomer->floral_buds ) {
-
2293 for (auto &fbud: petiole) {
-
2294 if (fbud.state != BUD_DORMANT) {
-
2295 phytomer->setFloralBudState(BUD_DEAD, fbud);
-
2296 }
-
2297 }
-
2298 }
-
2299
-
2300 }
-
2301 }
-
2302
-
2303}
-
2304
-
2305void PlantArchitecture::removeShootLeaves(uint plantID, uint shootID){
-
2306 if( plant_instances.find(plantID) == plant_instances.end() ){
-
2307 helios_runtime_error("ERROR (PlantArchitecture::removePlantLeaves): Plant with ID of " + std::to_string(plantID) + " does not exist.");
-
2308 }
+
2286 helios_runtime_error("ERROR (PlantArchitecture::setPlantAge): Plant with ID of " + std::to_string(plantID) + " does not exist.");
+
2287 }else if( plant_instances.at(plantID).shoot_tree.empty() ){
+
2288 helios_runtime_error("ERROR (PlantArchitecture::setPlantAge): Plant with ID of " + std::to_string(plantID) + " has no shoots, so could not get a base position.");
+
2289 }
+
2290 return plant_instances.at(plantID).current_age;
+
2291}
+
2292
+
2293void PlantArchitecture::harvestPlant(uint plantID){
+
2294
+
2295 if( plant_instances.find(plantID) == plant_instances.end() ){
+
2296 helios_runtime_error("ERROR (PlantArchitecture::harvestPlant): Plant with ID of " + std::to_string(plantID) + " does not exist.");
+
2297 }
+
2298
+
2299 for( auto& shoot: plant_instances.at(plantID).shoot_tree ){
+
2300 for( auto& phytomer: shoot->phytomers ){
+
2301
+
2302 for( auto& petiole : phytomer->floral_buds ) {
+
2303 for (auto &fbud: petiole) {
+
2304 if (fbud.state != BUD_DORMANT) {
+
2305 phytomer->setFloralBudState(BUD_DEAD, fbud);
+
2306 }
+
2307 }
+
2308 }
2309
-
2310 if( shootID>=plant_instances.at(plantID).shoot_tree.size() ){
-
2311 helios_runtime_error("ERROR (PlantArchitecture::removeShootLeaves): Shoot with ID of " + std::to_string(shootID) + " does not exist.");
-
2312 }
-
2313
-
2314 auto& shoot = plant_instances.at(plantID).shoot_tree.at(shootID);
-
2315
-
2316 for( auto& phytomer: shoot->phytomers ){
-
2317 phytomer->removeLeaf();
+
2310 }
+
2311 }
+
2312
+
2313}
+
2314
+
2315void PlantArchitecture::removeShootLeaves(uint plantID, uint shootID){
+
2316 if( plant_instances.find(plantID) == plant_instances.end() ){
+
2317 helios_runtime_error("ERROR (PlantArchitecture::removePlantLeaves): Plant with ID of " + std::to_string(plantID) + " does not exist.");
2318 }
2319
-
2320}
-
2321
-
2322void PlantArchitecture::removePlantLeaves(uint plantID ){
-
2323 if( plant_instances.find(plantID) == plant_instances.end() ){
-
2324 helios_runtime_error("ERROR (PlantArchitecture::removePlantLeaves): Plant with ID of " + std::to_string(plantID) + " does not exist.");
-
2325 }
-
2326
-
2327 for( auto& shoot: plant_instances.at(plantID).shoot_tree ){
-
2328 for( auto& phytomer: shoot->phytomers ){
-
2329 phytomer->removeLeaf();
-
2330 }
-
2331 }
-
2332}
-
2333
-
2334void PlantArchitecture::makePlantDormant( uint plantID ){
-
2335 if( plant_instances.find(plantID) == plant_instances.end() ){
-
2336 helios_runtime_error("ERROR (PlantArchitecture::makePlantDormant): Plant with ID of " + std::to_string(plantID) + " does not exist.");
-
2337 }
-
2338
-
2339 for( auto& shoot: plant_instances.at(plantID).shoot_tree ){
-
2340 shoot->makeDormant();
+
2320 if( shootID>=plant_instances.at(plantID).shoot_tree.size() ){
+
2321 helios_runtime_error("ERROR (PlantArchitecture::removeShootLeaves): Shoot with ID of " + std::to_string(shootID) + " does not exist.");
+
2322 }
+
2323
+
2324 auto& shoot = plant_instances.at(plantID).shoot_tree.at(shootID);
+
2325
+
2326 for( auto& phytomer: shoot->phytomers ){
+
2327 phytomer->removeLeaf();
+
2328 }
+
2329
+
2330}
+
2331
+
2332void PlantArchitecture::removePlantLeaves(uint plantID ){
+
2333 if( plant_instances.find(plantID) == plant_instances.end() ){
+
2334 helios_runtime_error("ERROR (PlantArchitecture::removePlantLeaves): Plant with ID of " + std::to_string(plantID) + " does not exist.");
+
2335 }
+
2336
+
2337 for( auto& shoot: plant_instances.at(plantID).shoot_tree ){
+
2338 for( auto& phytomer: shoot->phytomers ){
+
2339 phytomer->removeLeaf();
+
2340 }
2341 }
2342}
2343
-
2344void PlantArchitecture::breakPlantDormancy( uint plantID ){
+
2344void PlantArchitecture::makePlantDormant( uint plantID ){
2345 if( plant_instances.find(plantID) == plant_instances.end() ){
-
2346 helios_runtime_error("ERROR (PlantArchitecture::breakPlantDormancy): Plant with ID of " + std::to_string(plantID) + " does not exist.");
+
2346 helios_runtime_error("ERROR (PlantArchitecture::makePlantDormant): Plant with ID of " + std::to_string(plantID) + " does not exist.");
2347 }
2348
2349 for( auto& shoot: plant_instances.at(plantID).shoot_tree ){
-
2350 shoot->breakDormancy();
+
2350 shoot->makeDormant();
2351 }
2352}
2353
-
2354
-
2355uint PlantArchitecture::getShootNodeCount( uint plantID, uint shootID ) const{
-
2356 if( plant_instances.find(plantID) == plant_instances.end() ){
-
2357 helios_runtime_error("ERROR (PlantArchitecture::getShootNodeCount): Plant with ID of " + std::to_string(plantID) + " does not exist.");
-
2358 }else if( plant_instances.at(plantID).shoot_tree.size()<=shootID ){
-
2359 helios_runtime_error("ERROR (PlantArchitecture::getShootNodeCount): Shoot ID is out of range.");
-
2360 }
-
2361 return plant_instances.at(plantID).shoot_tree.at(shootID)->current_node_number;
+
2354void PlantArchitecture::breakPlantDormancy( uint plantID ){
+
2355 if( plant_instances.find(plantID) == plant_instances.end() ){
+
2356 helios_runtime_error("ERROR (PlantArchitecture::breakPlantDormancy): Plant with ID of " + std::to_string(plantID) + " does not exist.");
+
2357 }
+
2358
+
2359 for( auto& shoot: plant_instances.at(plantID).shoot_tree ){
+
2360 shoot->breakDormancy();
+
2361 }
2362}
2363
-
2364float PlantArchitecture::getShootTaper( uint plantID, uint shootID ) const{
-
2365
+
2364
+
2365uint PlantArchitecture::getShootNodeCount( uint plantID, uint shootID ) const{
2366 if( plant_instances.find(plantID) == plant_instances.end() ){
-
2367 helios_runtime_error("ERROR (PlantArchitecture::getShootTaper): Plant with ID of " + std::to_string(plantID) + " does not exist.");
+
2367 helios_runtime_error("ERROR (PlantArchitecture::getShootNodeCount): Plant with ID of " + std::to_string(plantID) + " does not exist.");
2368 }else if( plant_instances.at(plantID).shoot_tree.size()<=shootID ){
-
2369 helios_runtime_error("ERROR (PlantArchitecture::getShootTaper): Shoot ID is out of range.");
+
2369 helios_runtime_error("ERROR (PlantArchitecture::getShootNodeCount): Shoot ID is out of range.");
2370 }
-
2371
-
2372 float r0 = plant_instances.at(plantID).shoot_tree.at(shootID)->shoot_internode_radii.front().front();
-
2373 float r1 = plant_instances.at(plantID).shoot_tree.at(shootID)->shoot_internode_radii.back().back();
-
2374
-
2375 float taper = (r0-r1)/r0;
-
2376 if( taper<0 ){
-
2377 taper = 0;
-
2378 }else if( taper>1 ){
-
2379 taper = 1;
+
2371 return plant_instances.at(plantID).shoot_tree.at(shootID)->current_node_number;
+
2372}
+
2373
+
2374float PlantArchitecture::getShootTaper( uint plantID, uint shootID ) const{
+
2375
+
2376 if( plant_instances.find(plantID) == plant_instances.end() ){
+
2377 helios_runtime_error("ERROR (PlantArchitecture::getShootTaper): Plant with ID of " + std::to_string(plantID) + " does not exist.");
+
2378 }else if( plant_instances.at(plantID).shoot_tree.size()<=shootID ){
+
2379 helios_runtime_error("ERROR (PlantArchitecture::getShootTaper): Shoot ID is out of range.");
2380 }
2381
-
2382 return taper;
-
2383
-
2384}
-
2385
-
-
2386std::vector<uint> PlantArchitecture::getAllPlantObjectIDs(uint plantID) const{
-
2387
-
2388 if( plant_instances.find(plantID) == plant_instances.end() ){
-
2389 helios_runtime_error("ERROR (PlantArchitecture::getAllPlantObjectIDs): Plant with ID of " + std::to_string(plantID) + " does not exist.");
+
2382 float r0 = plant_instances.at(plantID).shoot_tree.at(shootID)->shoot_internode_radii.front().front();
+
2383 float r1 = plant_instances.at(plantID).shoot_tree.at(shootID)->shoot_internode_radii.back().back();
+
2384
+
2385 float taper = (r0-r1)/r0;
+
2386 if( taper<0 ){
+
2387 taper = 0;
+
2388 }else if( taper>1 ){
+
2389 taper = 1;
2390 }
2391
-
2392 std::vector<uint> objIDs;
+
2392 return taper;
2393
-
2394 for( const auto& shoot: plant_instances.at(plantID).shoot_tree ){
-
2395 objIDs.push_back(shoot->internode_tube_objID);
-
2396 for( const auto& phytomer: shoot->phytomers ){
-
2397 std::vector<uint> petiole_objIDs_flat = flatten(phytomer->petiole_objIDs);
-
2398 objIDs.insert(objIDs.end(), petiole_objIDs_flat.begin(), petiole_objIDs_flat.end() );
-
2399 std::vector<uint> leaf_objIDs_flat = flatten(phytomer->leaf_objIDs);
-
2400 objIDs.insert(objIDs.end(), leaf_objIDs_flat.begin(), leaf_objIDs_flat.end() );
-
2401 for( auto &petiole : phytomer->floral_buds ) {
-
2402 for( auto &fbud : petiole ) {
-
2403 std::vector<uint> inflorescence_objIDs_flat = fbud.inflorescence_objIDs;
-
2404 objIDs.insert(objIDs.end(), inflorescence_objIDs_flat.begin(), inflorescence_objIDs_flat.end());
-
2405 std::vector<uint> peduncle_objIDs_flat = fbud.peduncle_objIDs;
-
2406 objIDs.insert(objIDs.end(), peduncle_objIDs_flat.begin(), peduncle_objIDs_flat.end());
-
2407 }
-
2408 }
-
2409 }
-
2410 }
-
2411
-
2412 return objIDs;
-
2413
-
2414}
-
-
2415
-
-
2416std::vector<uint> PlantArchitecture::getAllPlantUUIDs(uint plantID) const{
-
2417 return context_ptr->getObjectPrimitiveUUIDs(getAllPlantObjectIDs(plantID));
-
2418}
-
-
2419
-
-
2420std::vector<uint> PlantArchitecture::getPlantInternodeObjectIDs(uint plantID) const{
+
2394}
+
2395
+
+
2396std::vector<uint> PlantArchitecture::getAllPlantObjectIDs(uint plantID) const{
+
2397
+
2398 if( plant_instances.find(plantID) == plant_instances.end() ){
+
2399 helios_runtime_error("ERROR (PlantArchitecture::getAllPlantObjectIDs): Plant with ID of " + std::to_string(plantID) + " does not exist.");
+
2400 }
+
2401
+
2402 std::vector<uint> objIDs;
+
2403
+
2404 for( const auto& shoot: plant_instances.at(plantID).shoot_tree ){
+
2405 objIDs.push_back(shoot->internode_tube_objID);
+
2406 for( const auto& phytomer: shoot->phytomers ){
+
2407 std::vector<uint> petiole_objIDs_flat = flatten(phytomer->petiole_objIDs);
+
2408 objIDs.insert(objIDs.end(), petiole_objIDs_flat.begin(), petiole_objIDs_flat.end() );
+
2409 std::vector<uint> leaf_objIDs_flat = flatten(phytomer->leaf_objIDs);
+
2410 objIDs.insert(objIDs.end(), leaf_objIDs_flat.begin(), leaf_objIDs_flat.end() );
+
2411 for( auto &petiole : phytomer->floral_buds ) {
+
2412 for( auto &fbud : petiole ) {
+
2413 std::vector<uint> inflorescence_objIDs_flat = fbud.inflorescence_objIDs;
+
2414 objIDs.insert(objIDs.end(), inflorescence_objIDs_flat.begin(), inflorescence_objIDs_flat.end());
+
2415 std::vector<uint> peduncle_objIDs_flat = fbud.peduncle_objIDs;
+
2416 objIDs.insert(objIDs.end(), peduncle_objIDs_flat.begin(), peduncle_objIDs_flat.end());
+
2417 }
+
2418 }
+
2419 }
+
2420 }
2421
-
2422 if( plant_instances.find(plantID) == plant_instances.end() ){
-
2423 helios_runtime_error("ERROR (PlantArchitecture::getPlantInternodeObjectIDs): Plant with ID of " + std::to_string(plantID) + " does not exist.");
-
2424 }
+
2422 return objIDs;
+
2423
+
2424}
+
2425
-
2426 std::vector<uint> objIDs;
-
2427
-
2428 auto &shoot_tree = plant_instances.at(plantID).shoot_tree;
+
+
2426std::vector<uint> PlantArchitecture::getAllPlantUUIDs(uint plantID) const{
+
2427 return context_ptr->getObjectPrimitiveUUIDs(getAllPlantObjectIDs(plantID));
+
2428}
+
2429
-
2430 for( auto &shoot : shoot_tree ){
-
2431 objIDs.push_back( shoot->internode_tube_objID );
-
2432 }
-
2433
-
2434 return objIDs;
+
+
2430std::vector<uint> PlantArchitecture::getPlantInternodeObjectIDs(uint plantID) const{
+
2431
+
2432 if( plant_instances.find(plantID) == plant_instances.end() ){
+
2433 helios_runtime_error("ERROR (PlantArchitecture::getPlantInternodeObjectIDs): Plant with ID of " + std::to_string(plantID) + " does not exist.");
+
2434 }
2435
-
2436}
-
+
2436 std::vector<uint> objIDs;
2437
-
-
2438std::vector<uint> PlantArchitecture::getPlantPetioleObjectIDs(uint plantID) const{
-
2439 if( plant_instances.find(plantID) == plant_instances.end() ){
-
2440 helios_runtime_error("ERROR (PlantArchitecture::getPlantPetioleObjectIDs): Plant with ID of " + std::to_string(plantID) + " does not exist.");
-
2441 }
-
2442
-
2443 std::vector<uint> objIDs;
-
2444
-
2445 auto &shoot_tree = plant_instances.at(plantID).shoot_tree;
-
2446
-
2447 for( auto &shoot : shoot_tree ){
-
2448 for( auto &phytomer : shoot->phytomers ){
-
2449 for( auto &petiole : phytomer->petiole_objIDs ){
-
2450 objIDs.insert(objIDs.end(), petiole.begin(), petiole.end() );
-
2451 }
-
2452 }
-
2453 }
+
2438 auto &shoot_tree = plant_instances.at(plantID).shoot_tree;
+
2439
+
2440 for( auto &shoot : shoot_tree ){
+
2441 objIDs.push_back( shoot->internode_tube_objID );
+
2442 }
+
2443
+
2444 return objIDs;
+
2445
+
2446}
+
+
2447
+
+
2448std::vector<uint> PlantArchitecture::getPlantPetioleObjectIDs(uint plantID) const{
+
2449 if( plant_instances.find(plantID) == plant_instances.end() ){
+
2450 helios_runtime_error("ERROR (PlantArchitecture::getPlantPetioleObjectIDs): Plant with ID of " + std::to_string(plantID) + " does not exist.");
+
2451 }
+
2452
+
2453 std::vector<uint> objIDs;
2454
-
2455 return objIDs;
+
2455 auto &shoot_tree = plant_instances.at(plantID).shoot_tree;
2456
-
2457}
+
2457 for( auto &shoot : shoot_tree ){
+
2458 for( auto &phytomer : shoot->phytomers ){
+
2459 for( auto &petiole : phytomer->petiole_objIDs ){
+
2460 objIDs.insert(objIDs.end(), petiole.begin(), petiole.end() );
+
2461 }
+
2462 }
+
2463 }
+
2464
+
2465 return objIDs;
+
2466
+
2467}
-
2458
-
-
2459std::vector<uint> PlantArchitecture::getPlantLeafObjectIDs(uint plantID) const{
-
2460 if( plant_instances.find(plantID) == plant_instances.end() ){
-
2461 helios_runtime_error("ERROR (PlantArchitecture::getPlantLeafObjectIDs): Plant with ID of " + std::to_string(plantID) + " does not exist.");
-
2462 }
-
2463
-
2464 std::vector<uint> objIDs;
-
2465
-
2466 auto &shoot_tree = plant_instances.at(plantID).shoot_tree;
-
2467
-
2468 for( auto &shoot : shoot_tree ){
-
2469 for( auto &phytomer : shoot->phytomers ){
-
2470 for( int petiole=0; petiole<phytomer->leaf_objIDs.size(); petiole++ ) {
-
2471 objIDs.insert(objIDs.end(), phytomer->leaf_objIDs.at(petiole).begin(), phytomer->leaf_objIDs.at(petiole).end());
-
2472 }
-
2473 }
-
2474 }
+
2468
+
+
2469std::vector<uint> PlantArchitecture::getPlantLeafObjectIDs(uint plantID) const{
+
2470 if( plant_instances.find(plantID) == plant_instances.end() ){
+
2471 helios_runtime_error("ERROR (PlantArchitecture::getPlantLeafObjectIDs): Plant with ID of " + std::to_string(plantID) + " does not exist.");
+
2472 }
+
2473
+
2474 std::vector<uint> objIDs;
2475
-
2476 return objIDs;
+
2476 auto &shoot_tree = plant_instances.at(plantID).shoot_tree;
2477
-
2478}
-
-
2479
-
-
2480std::vector<uint> PlantArchitecture::getPlantPeduncleObjectIDs(uint plantID) const{
-
2481
-
2482 if( plant_instances.find(plantID) == plant_instances.end() ){
-
2483 helios_runtime_error("ERROR (PlantArchitecture::getPlantPeduncleObjectIDs): Plant with ID of " + std::to_string(plantID) + " does not exist.");
+
2478 for( auto &shoot : shoot_tree ){
+
2479 for( auto &phytomer : shoot->phytomers ){
+
2480 for( int petiole=0; petiole<phytomer->leaf_objIDs.size(); petiole++ ) {
+
2481 objIDs.insert(objIDs.end(), phytomer->leaf_objIDs.at(petiole).begin(), phytomer->leaf_objIDs.at(petiole).end());
+
2482 }
+
2483 }
2484 }
2485
-
2486 std::vector<uint> objIDs;
+
2486 return objIDs;
2487
-
2488 auto &shoot_tree = plant_instances.at(plantID).shoot_tree;
+
2488}
+
2489
-
2490 for( auto &shoot : shoot_tree ){
-
2491 for( auto &phytomer : shoot->phytomers ){
-
2492 for( auto &petiole : phytomer->floral_buds ) {
-
2493 for( auto &fbud : petiole ) {
-
2494 objIDs.insert(objIDs.end(), fbud.peduncle_objIDs.begin(), fbud.peduncle_objIDs.end());
-
2495 }
-
2496 }
-
2497 }
-
2498 }
+
+
2490std::vector<uint> PlantArchitecture::getPlantPeduncleObjectIDs(uint plantID) const{
+
2491
+
2492 if( plant_instances.find(plantID) == plant_instances.end() ){
+
2493 helios_runtime_error("ERROR (PlantArchitecture::getPlantPeduncleObjectIDs): Plant with ID of " + std::to_string(plantID) + " does not exist.");
+
2494 }
+
2495
+
2496 std::vector<uint> objIDs;
+
2497
+
2498 auto &shoot_tree = plant_instances.at(plantID).shoot_tree;
2499
-
2500 return objIDs;
-
2501
-
2502}
-
-
2503
-
-
2504std::vector<uint> PlantArchitecture::getPlantFlowerObjectIDs(uint plantID) const{
-
2505
-
2506 if( plant_instances.find(plantID) == plant_instances.end() ){
-
2507 helios_runtime_error("ERROR (PlantArchitecture::getPlantInflorescenceObjectIDs): Plant with ID of " + std::to_string(plantID) + " does not exist.");
+
2500 for( auto &shoot : shoot_tree ){
+
2501 for( auto &phytomer : shoot->phytomers ){
+
2502 for( auto &petiole : phytomer->floral_buds ) {
+
2503 for( auto &fbud : petiole ) {
+
2504 objIDs.insert(objIDs.end(), fbud.peduncle_objIDs.begin(), fbud.peduncle_objIDs.end());
+
2505 }
+
2506 }
+
2507 }
2508 }
2509
-
2510 std::vector<uint> objIDs;
+
2510 return objIDs;
2511
-
2512 auto &shoot_tree = plant_instances.at(plantID).shoot_tree;
-
2513
-
2514 for( auto &shoot : shoot_tree ){
-
2515 for( auto &phytomer : shoot->phytomers ){
-
2516 for(int petiole=0; petiole<phytomer->floral_buds.size(); petiole++ ){
-
2517 for(int bud=0; bud<phytomer->floral_buds.at(petiole).size(); bud++ ){
-
2518 if(phytomer->floral_buds.at(petiole).at(bud).state == BUD_FLOWER_OPEN || phytomer->floral_buds.at(petiole).at(bud).state == BUD_FLOWER_CLOSED ) {
-
2519 objIDs.insert(objIDs.end(), phytomer->floral_buds.at(petiole).at(bud).inflorescence_objIDs.begin(), phytomer->floral_buds.at(petiole).at(bud).inflorescence_objIDs.end());
-
2520 }
-
2521 }
-
2522 }
-
2523 }
-
2524 }
-
2525
-
2526 return objIDs;
-
2527
-
2528
-
2529}
+
2512}
-
2530
-
-
2531std::vector<uint> PlantArchitecture::getPlantFruitObjectIDs(uint plantID) const{
-
2532
-
2533 if( plant_instances.find(plantID) == plant_instances.end() ){
-
2534 helios_runtime_error("ERROR (PlantArchitecture::getPlantInflorescenceObjectIDs): Plant with ID of " + std::to_string(plantID) + " does not exist.");
-
2535 }
-
2536
-
2537 std::vector<uint> objIDs;
+
2513
+
+
2514std::vector<uint> PlantArchitecture::getPlantFlowerObjectIDs(uint plantID) const{
+
2515
+
2516 if( plant_instances.find(plantID) == plant_instances.end() ){
+
2517 helios_runtime_error("ERROR (PlantArchitecture::getPlantInflorescenceObjectIDs): Plant with ID of " + std::to_string(plantID) + " does not exist.");
+
2518 }
+
2519
+
2520 std::vector<uint> objIDs;
+
2521
+
2522 auto &shoot_tree = plant_instances.at(plantID).shoot_tree;
+
2523
+
2524 for( auto &shoot : shoot_tree ){
+
2525 for( auto &phytomer : shoot->phytomers ){
+
2526 for(int petiole=0; petiole<phytomer->floral_buds.size(); petiole++ ){
+
2527 for(int bud=0; bud<phytomer->floral_buds.at(petiole).size(); bud++ ){
+
2528 if(phytomer->floral_buds.at(petiole).at(bud).state == BUD_FLOWER_OPEN || phytomer->floral_buds.at(petiole).at(bud).state == BUD_FLOWER_CLOSED ) {
+
2529 objIDs.insert(objIDs.end(), phytomer->floral_buds.at(petiole).at(bud).inflorescence_objIDs.begin(), phytomer->floral_buds.at(petiole).at(bud).inflorescence_objIDs.end());
+
2530 }
+
2531 }
+
2532 }
+
2533 }
+
2534 }
+
2535
+
2536 return objIDs;
+
2537
2538
-
2539 auto &shoot_tree = plant_instances.at(plantID).shoot_tree;
-
2540
-
2541 for( auto &shoot : shoot_tree ){
-
2542 for( auto &phytomer : shoot->phytomers ){
-
2543 for(int petiole=0; petiole<phytomer->floral_buds.size(); petiole++ ){
-
2544 for(int bud=0; bud<phytomer->floral_buds.at(petiole).size(); bud++ ){
-
2545 if(phytomer->floral_buds.at(petiole).at(bud).state == BUD_FRUITING ) {
-
2546 objIDs.insert(objIDs.end(), phytomer->floral_buds.at(petiole).at(bud).inflorescence_objIDs.begin(), phytomer->floral_buds.at(petiole).at(bud).inflorescence_objIDs.end());
-
2547 }
-
2548 }
-
2549 }
-
2550 }
-
2551 }
-
2552
-
2553 return objIDs;
-
2554
-
2555
-
2556}
+
2539}
-
2557
-
-
2558uint PlantArchitecture::addPlantInstance(const helios::vec3 &base_position, float current_age) {
-
2559
-
2560 if( current_age<0 ){
-
2561 helios_runtime_error("ERROR (PlantArchitecture::addPlantInstance): Current age must be greater than or equal to zero.");
-
2562 }
-
2563
-
2564 PlantInstance instance(base_position, current_age, context_ptr);
+
2540
+
+
2541std::vector<uint> PlantArchitecture::getPlantFruitObjectIDs(uint plantID) const{
+
2542
+
2543 if( plant_instances.find(plantID) == plant_instances.end() ){
+
2544 helios_runtime_error("ERROR (PlantArchitecture::getPlantInflorescenceObjectIDs): Plant with ID of " + std::to_string(plantID) + " does not exist.");
+
2545 }
+
2546
+
2547 std::vector<uint> objIDs;
+
2548
+
2549 auto &shoot_tree = plant_instances.at(plantID).shoot_tree;
+
2550
+
2551 for( auto &shoot : shoot_tree ){
+
2552 for( auto &phytomer : shoot->phytomers ){
+
2553 for(int petiole=0; petiole<phytomer->floral_buds.size(); petiole++ ){
+
2554 for(int bud=0; bud<phytomer->floral_buds.at(petiole).size(); bud++ ){
+
2555 if(phytomer->floral_buds.at(petiole).at(bud).state == BUD_FRUITING ) {
+
2556 objIDs.insert(objIDs.end(), phytomer->floral_buds.at(petiole).at(bud).inflorescence_objIDs.begin(), phytomer->floral_buds.at(petiole).at(bud).inflorescence_objIDs.end());
+
2557 }
+
2558 }
+
2559 }
+
2560 }
+
2561 }
+
2562
+
2563 return objIDs;
+
2564
2565
-
2566 plant_instances.emplace(plant_count, instance);
+
2566}
+
2567
-
2568 plant_count++;
+
+
2568uint PlantArchitecture::addPlantInstance(const helios::vec3 &base_position, float current_age) {
2569
-
2570 return plant_count-1;
-
2571
-
2572}
-
+
2570 if( current_age<0 ){
+
2571 helios_runtime_error("ERROR (PlantArchitecture::addPlantInstance): Current age must be greater than or equal to zero.");
+
2572 }
2573
-
-
2574uint PlantArchitecture::duplicatePlantInstance(uint plantID, const helios::vec3 &base_position, const AxisRotation &base_rotation, float current_age) {
+
2574 PlantInstance instance(base_position, current_age, context_ptr);
2575
-
2576 if( plant_instances.find(plantID) == plant_instances.end() ){
-
2577 helios_runtime_error("ERROR (PlantArchitecture::duplicatePlantInstance): Plant with ID of " + std::to_string(plantID) + " does not exist.");
-
2578 }
+
2576 plant_instances.emplace(plant_count, instance);
+
2577
+
2578 plant_count++;
2579
-
2580 auto plant_shoot_tree = &plant_instances.at(plantID).shoot_tree;
+
2580 return plant_count-1;
2581
-
2582 uint plantID_new = addPlantInstance(base_position, current_age);
-
2583
-
2584 if( plant_shoot_tree->empty() ){ //no shoots to add
-
2585 return plantID_new;
-
2586 }
-
2587 if( plant_shoot_tree->front()->phytomers.empty() ){ //no phytomers to add
-
2588 return plantID_new;
-
2589 }
-
2590
-
2591 for( auto shoot: *plant_shoot_tree ) {
-
2592
-
2593 uint shootID_new; //ID of the new shoot; will be set once the shoot is created on the first loop iteration
-
2594 for (int node = 0; node < shoot->current_node_number; node++) {
-
2595
-
2596 auto phytomer = shoot->phytomers.at(node);
-
2597 float internode_radius = phytomer->internode_radius_initial;
-
2598 float internode_length_max = phytomer->internode_length_max;
-
2599 float internode_scale_factor_fraction = phytomer->current_internode_scale_factor;
-
2600 float leaf_scale_factor_fraction = phytomer->current_leaf_scale_factor;
-
2601
-
2602 if (node == 0) {//first phytomer on shoot
-
2603 AxisRotation original_base_rotation = shoot->base_rotation;
-
2604 if(shoot->parent_shoot_ID == -1 ) { //first shoot on plant
-
2605 shootID_new = addBaseStemShoot(plantID_new, 1, original_base_rotation + base_rotation, internode_radius, internode_length_max, internode_scale_factor_fraction, leaf_scale_factor_fraction, 0, shoot->shoot_type_label);
-
2606 }else{ //child shoot
-
2607 uint parent_node = plant_shoot_tree->at(shoot->parent_shoot_ID)->parent_node_index;
-
2608 uint parent_petiole_index = 0;
-
2609 for( auto &petiole : phytomer->axillary_vegetative_buds ) {
-
2610 shootID_new = addChildShoot(plantID_new, shoot->parent_shoot_ID, parent_node, 1, original_base_rotation, internode_radius, internode_length_max, internode_scale_factor_fraction, leaf_scale_factor_fraction, 0, shoot->shoot_type_label, parent_petiole_index);
-
2611 parent_petiole_index++;
-
2612 }
-
2613 }
-
2614 } else {
-
2615 //each phytomer needs to be added one-by-one to account for possible internodes/leaves that are not fully elongated
-
2616 appendPhytomerToShoot(plantID_new, shootID_new, shoot_types.at(shoot->shoot_type_label).phytomer_parameters, internode_radius, internode_length_max, internode_scale_factor_fraction, leaf_scale_factor_fraction);
-
2617 }
-
2618
-
2619 }
-
2620
-
2621 }
-
2622
-
2623 return plantID_new;
-
2624
-
2625}
+
2582}
-
2626
-
-
2627void PlantArchitecture::deletePlantInstance(uint plantID){
+
2583
+
+
2584uint PlantArchitecture::duplicatePlantInstance(uint plantID, const helios::vec3 &base_position, const AxisRotation &base_rotation, float current_age) {
+
2585
+
2586 if( plant_instances.find(plantID) == plant_instances.end() ){
+
2587 helios_runtime_error("ERROR (PlantArchitecture::duplicatePlantInstance): Plant with ID of " + std::to_string(plantID) + " does not exist.");
+
2588 }
+
2589
+
2590 auto plant_shoot_tree = &plant_instances.at(plantID).shoot_tree;
+
2591
+
2592 uint plantID_new = addPlantInstance(base_position, current_age);
+
2593
+
2594 if( plant_shoot_tree->empty() ){ //no shoots to add
+
2595 return plantID_new;
+
2596 }
+
2597 if( plant_shoot_tree->front()->phytomers.empty() ){ //no phytomers to add
+
2598 return plantID_new;
+
2599 }
+
2600
+
2601 for( auto shoot: *plant_shoot_tree ) {
+
2602
+
2603 uint shootID_new; //ID of the new shoot; will be set once the shoot is created on the first loop iteration
+
2604 for (int node = 0; node < shoot->current_node_number; node++) {
+
2605
+
2606 auto phytomer = shoot->phytomers.at(node);
+
2607 float internode_radius = phytomer->internode_radius_initial;
+
2608 float internode_length_max = phytomer->internode_length_max;
+
2609 float internode_scale_factor_fraction = phytomer->current_internode_scale_factor;
+
2610 float leaf_scale_factor_fraction = phytomer->current_leaf_scale_factor;
+
2611
+
2612 if (node == 0) {//first phytomer on shoot
+
2613 AxisRotation original_base_rotation = shoot->base_rotation;
+
2614 if(shoot->parent_shoot_ID == -1 ) { //first shoot on plant
+
2615 shootID_new = addBaseStemShoot(plantID_new, 1, original_base_rotation + base_rotation, internode_radius, internode_length_max, internode_scale_factor_fraction, leaf_scale_factor_fraction, 0, shoot->shoot_type_label);
+
2616 }else{ //child shoot
+
2617 uint parent_node = plant_shoot_tree->at(shoot->parent_shoot_ID)->parent_node_index;
+
2618 uint parent_petiole_index = 0;
+
2619 for( auto &petiole : phytomer->axillary_vegetative_buds ) {
+
2620 shootID_new = addChildShoot(plantID_new, shoot->parent_shoot_ID, parent_node, 1, original_base_rotation, internode_radius, internode_length_max, internode_scale_factor_fraction, leaf_scale_factor_fraction, 0, shoot->shoot_type_label, parent_petiole_index);
+
2621 parent_petiole_index++;
+
2622 }
+
2623 }
+
2624 } else {
+
2625 //each phytomer needs to be added one-by-one to account for possible internodes/leaves that are not fully elongated
+
2626 appendPhytomerToShoot(plantID_new, shootID_new, shoot_types.at(shoot->shoot_type_label).phytomer_parameters, internode_radius, internode_length_max, internode_scale_factor_fraction, leaf_scale_factor_fraction);
+
2627 }
2628
-
2629 if( plant_instances.find(plantID) == plant_instances.end() ){
-
2630 return;
+
2629 }
+
2630
2631 }
2632
-
2633 context_ptr->deleteObject(getAllPlantObjectIDs(plantID));
+
2633 return plantID_new;
2634
-
2635 plant_instances.erase(plantID);
-
2636
-
2637}
+
2635}
+
2636
+
+
2637void PlantArchitecture::deletePlantInstance(uint plantID){
2638
-
-
2639void PlantArchitecture::deletePlantInstance( const std::vector<uint> &plantIDs ){
-
2640
-
2641 for( uint ID : plantIDs ){
-
2642 deletePlantInstance(ID);
-
2643 }
+
2639 if( plant_instances.find(plantID) == plant_instances.end() ){
+
2640 return;
+
2641 }
+
2642
+
2643 context_ptr->deleteObject(getAllPlantObjectIDs(plantID));
2644
-
2645}
-
+
2645 plant_instances.erase(plantID);
2646
-
-
2647void PlantArchitecture::setPlantPhenologicalThresholds(uint plantID, float time_to_leaf_out, float time_to_flower_initiation, float time_to_flower_opening, float time_to_fruit_set, float time_to_fruit_maturity, float time_to_senescence) {
+
2647}
+
2648
-
2649 if( plant_instances.find(plantID) == plant_instances.end() ){
-
2650 helios_runtime_error("ERROR (PlantArchitecture::setPlantPhenologicalThresholds): Plant with ID of " + std::to_string(plantID) + " does not exist.");
-
2651 }
-
2652
-
2653 plant_instances.at(plantID).dd_to_dormancy_break = time_to_leaf_out;
-
2654 plant_instances.at(plantID).dd_to_flower_initiation = time_to_flower_initiation;
-
2655 plant_instances.at(plantID).dd_to_flower_opening = time_to_flower_opening;
-
2656 plant_instances.at(plantID).dd_to_fruit_set = time_to_fruit_set;
-
2657 plant_instances.at(plantID).dd_to_fruit_maturity = time_to_fruit_maturity;
-
2658 plant_instances.at(plantID).dd_to_senescence = time_to_senescence;
-
2659
-
2660}
+
+
2649void PlantArchitecture::deletePlantInstance( const std::vector<uint> &plantIDs ){
+
2650
+
2651 for( uint ID : plantIDs ){
+
2652 deletePlantInstance(ID);
+
2653 }
+
2654
+
2655}
-
2661
-
2662void PlantArchitecture::disablePlantPhenology( uint plantID ){
-
2663 plant_instances.at(plantID).dd_to_dormancy_break = 0;
-
2664 plant_instances.at(plantID).dd_to_flower_initiation = -1;
-
2665 plant_instances.at(plantID).dd_to_flower_opening = -1;
-
2666 plant_instances.at(plantID).dd_to_fruit_set = -1;
-
2667 plant_instances.at(plantID).dd_to_fruit_maturity = -1;
-
2668 plant_instances.at(plantID).dd_to_senescence = 1e6;
-
2669}
+
2656
+
+
2657void PlantArchitecture::setPlantPhenologicalThresholds(uint plantID, float time_to_dormancy_break, float time_to_flower_initiation, float time_to_flower_opening, float time_to_fruit_set, float time_to_fruit_maturity, float time_to_senescence, bool is_evergreen) {
+
2658
+
2659 if( plant_instances.find(plantID) == plant_instances.end() ){
+
2660 helios_runtime_error("ERROR (PlantArchitecture::setPlantPhenologicalThresholds): Plant with ID of " + std::to_string(plantID) + " does not exist.");
+
2661 }
+
2662
+
2663 plant_instances.at(plantID).dd_to_dormancy_break = time_to_dormancy_break;
+
2664 plant_instances.at(plantID).dd_to_flower_initiation = time_to_flower_initiation;
+
2665 plant_instances.at(plantID).dd_to_flower_opening = time_to_flower_opening;
+
2666 plant_instances.at(plantID).dd_to_fruit_set = time_to_fruit_set;
+
2667 plant_instances.at(plantID).dd_to_fruit_maturity = time_to_fruit_maturity;
+
2668 plant_instances.at(plantID).dd_to_senescence = time_to_senescence;
+
2669 plant_instances.at(plantID).is_evergreen = is_evergreen;
2670
-
-
2671void PlantArchitecture::advanceTime( float dt ){
+
2671}
+
2672
-
2673 for (auto &plant: plant_instances ) {
-
2674
-
2675 uint plantID = plant.first;
-
2676
-
2677 advanceTime(plantID, dt);
-
2678
-
2679 }
-
2680
-
2681}
+
2673void PlantArchitecture::disablePlantPhenology( uint plantID ){
+
2674 plant_instances.at(plantID).dd_to_dormancy_break = 0;
+
2675 plant_instances.at(plantID).dd_to_flower_initiation = -1;
+
2676 plant_instances.at(plantID).dd_to_flower_opening = -1;
+
2677 plant_instances.at(plantID).dd_to_fruit_set = -1;
+
2678 plant_instances.at(plantID).dd_to_fruit_maturity = -1;
+
2679 plant_instances.at(plantID).dd_to_senescence = 1e6;
+
2680}
+
2681
+
+
2682void PlantArchitecture::advanceTime( float dt ){
+
2683
+
2684 for (auto &plant: plant_instances ) {
+
2685
+
2686 uint plantID = plant.first;
+
2687
+
2688 advanceTime(plantID, dt);
+
2689
+
2690 }
+
2691
+
2692}
-
2682
-
-
2683void PlantArchitecture::advanceTime( uint plantID, float dt ) {
-
2684
-
2685 if( plant_instances.find(plantID) == plant_instances.end() ){
-
2686 helios_runtime_error("ERROR (PlantArchitecture::advanceTime): Plant with ID of " + std::to_string(plantID) + " does not exist.");
-
2687 }
-
2688
-
2689 PlantInstance& plant_instance = plant_instances.at(plantID);
-
2690
-
2691 auto shoot_tree = &plant_instance.shoot_tree;
-
2692
-
2693 if( shoot_tree->empty() ){
-
2694 return;
-
2695 }
-
2696
-
2697 //accounting for case of dt>phyllochron
-
2698 float phyllochron_min = shoot_tree->front()->shoot_parameters.phyllochron.val();
-
2699 for ( int i=1; i<shoot_tree->size(); i++ ){
-
2700 if( shoot_tree->at(i)->shoot_parameters.phyllochron.val() < phyllochron_min ){
-
2701 phyllochron_min = shoot_tree->at(i)->shoot_parameters.phyllochron.val();
-
2702 }
-
2703 }
-
2704
-
2705 int Nsteps = std::floor(dt/phyllochron_min);
-
2706 float remainder_time = dt-phyllochron_min*float(Nsteps);
-
2707 if( remainder_time>0.f ){
-
2708 Nsteps++;
-
2709 }
-
2710
-
2711 for( int timestep=0; timestep<Nsteps; timestep++ ) {
-
2712
-
2713 float dt_max = phyllochron_min;
-
2714 if (timestep == Nsteps - 1 && remainder_time != 0.f ) {
-
2715 dt_max = remainder_time;
-
2716 }
-
2717
-
2718 plant_instance.current_age += dt_max;
-
2719
-
2720 if( plant_instance.current_age > plant_instance.dd_to_senescence ){
-
2721 std::cout << "Going dormant" << std::endl;
-
2722 for (const auto& shoot : *shoot_tree) {
-
2723 shoot->makeDormant();
-
2724 shoot->carbohydrate_pool_molC = 100;
-
2725 plant_instance.current_age = 0;
-
2726 }
-
2727 harvestPlant(plantID);
-
2728 continue;
-
2729 }
+
2693
+
+
2694void PlantArchitecture::advanceTime( uint plantID, float dt ) {
+
2695
+
2696 if( plant_instances.find(plantID) == plant_instances.end() ){
+
2697 helios_runtime_error("ERROR (PlantArchitecture::advanceTime): Plant with ID of " + std::to_string(plantID) + " does not exist.");
+
2698 }
+
2699
+
2700 PlantInstance& plant_instance = plant_instances.at(plantID);
+
2701
+
2702 auto shoot_tree = &plant_instance.shoot_tree;
+
2703
+
2704 if( shoot_tree->empty() ){
+
2705 return;
+
2706 }
+
2707
+
2708 //accounting for case of dt>phyllochron
+
2709 float phyllochron_min = shoot_tree->front()->shoot_parameters.phyllochron.val();
+
2710 for ( int i=1; i<shoot_tree->size(); i++ ){
+
2711 if( shoot_tree->at(i)->shoot_parameters.phyllochron.val() < phyllochron_min ){
+
2712 phyllochron_min = shoot_tree->at(i)->shoot_parameters.phyllochron.val();
+
2713 }
+
2714 }
+
2715
+
2716 int Nsteps = std::floor(dt/phyllochron_min);
+
2717 float remainder_time = dt-phyllochron_min*float(Nsteps);
+
2718 if( remainder_time>0.f ){
+
2719 Nsteps++;
+
2720 }
+
2721
+
2722 for( int timestep=0; timestep<Nsteps; timestep++ ) {
+
2723
+
2724 float dt_max = phyllochron_min;
+
2725 if (timestep == Nsteps - 1 && remainder_time != 0.f ) {
+
2726 dt_max = remainder_time;
+
2727 }
+
2728
+
2729 plant_instance.current_age += dt_max;
2730
-
2731 size_t shoot_count = shoot_tree->size();
-
2732 for ( int i=0; i<shoot_count; i++ ){
-
2733
-
2734 auto shoot = shoot_tree->at(i);
-
2735
-
2736 for( auto &phytomer : shoot->phytomers ){
-
2737
-
2738 phytomer->age += dt_max;
-
2739
-
2740 if(phytomer->phytomer_parameters.phytomer_callback_function != nullptr ) {
-
2741 phytomer->phytomer_parameters.phytomer_callback_function(phytomer);
-
2742 }
-
2743 }
+
2731 if( plant_instance.current_age > plant_instance.dd_to_senescence ){
+
2732 std::cout << "Going dormant " << plant_instance.current_age << " " << plant_instance.dd_to_senescence << std::endl;
+
2733 for (const auto& shoot : *shoot_tree) {
+
2734 shoot->makeDormant();
+
2735 shoot->carbohydrate_pool_molC = 100;
+
2736 plant_instance.current_age = 0;
+
2737 }
+
2738 harvestPlant(plantID);
+
2739 continue;
+
2740 }
+
2741
+
2742 size_t shoot_count = shoot_tree->size();
+
2743 for ( int i=0; i<shoot_count; i++ ){
2744
-
2745 // ****** PHENOLOGICAL TRANSITIONS ****** //
+
2745 auto shoot = shoot_tree->at(i);
2746
-
2747 // breaking dormancy
-
2748 bool dormancy_broken_this_timestep = false;
-
2749 if (shoot->isdormant && plant_instance.current_age >= plant_instance.dd_to_dormancy_break) {
-
2750 shoot->breakDormancy();
-
2751 dormancy_broken_this_timestep = true;
-
2752 shoot->carbohydrate_pool_molC = 1e6;
-
2753 }
-
2754
-
2755 if (shoot->isdormant) { //dormant, don't do anything
-
2756 continue;
-
2757 }
-
2758
-
2759 for (auto &phytomer: shoot->phytomers) {
-
2760
-
2761 if (!shoot->isdormant) {
-
2762 phytomer->time_since_dormancy += dt_max;
-
2763 }
-
2764
-
2765 if (phytomer->floral_buds.empty() ) { //no floral buds - skip this phytomer
-
2766 continue;
-
2767 }
-
2768
-
2769 for (auto &petiole: phytomer->floral_buds) {
-
2770 for (auto &fbud: petiole) {
+
2747 for( auto &phytomer : shoot->phytomers ){
+
2748
+
2749 phytomer->age += dt_max;
+
2750
+
2751 if(phytomer->phytomer_parameters.phytomer_callback_function != nullptr ) {
+
2752 phytomer->phytomer_parameters.phytomer_callback_function(phytomer);
+
2753 }
+
2754 }
+
2755
+
2756 // ****** PHENOLOGICAL TRANSITIONS ****** //
+
2757
+
2758 // breaking dormancy
+
2759 bool dormancy_broken_this_timestep = false;
+
2760 if (shoot->isdormant && plant_instance.current_age >= plant_instance.dd_to_dormancy_break) {
+
2761 shoot->breakDormancy();
+
2762 dormancy_broken_this_timestep = true;
+
2763 shoot->carbohydrate_pool_molC = 1e6;
+
2764 }
+
2765
+
2766 if (shoot->isdormant) { //dormant, don't do anything
+
2767 continue;
+
2768 }
+
2769
+
2770 for (auto &phytomer: shoot->phytomers) {
2771
-
2772 if (fbud.state != BUD_DORMANT && fbud.state != BUD_DEAD) {
-
2773 fbud.time_counter += dt_max;
-
2774 }
+
2772 if (!shoot->isdormant) {
+
2773 phytomer->time_since_dormancy += dt_max;
+
2774 }
2775
-
2776 // -- Flowering -- //
-
2777 if (shoot->shoot_parameters.phytomer_parameters.inflorescence.flower_prototype_function != nullptr) { //user defined a flower prototype function
-
2778 // -- Flower initiation (closed flowers) -- //
-
2779 if (fbud.state == BUD_ACTIVE && plant_instance.dd_to_flower_initiation >= 0.f) { //bud is active and flower initiation is enabled
-
2780 if ((!shoot->shoot_parameters.flowers_require_dormancy && plant_instance.current_age >= plant_instance.dd_to_flower_initiation) ||
-
2781 (shoot->shoot_parameters.flowers_require_dormancy && phytomer->time_since_dormancy >= plant_instance.dd_to_flower_initiation)) {
-
2782 fbud.time_counter = 0;
-
2783 if (context_ptr->randu() < shoot->shoot_parameters.flower_bud_break_probability.val() ) {
-
2784 phytomer->setFloralBudState(BUD_FLOWER_CLOSED, fbud);
-
2785 } else {
-
2786 phytomer->setFloralBudState(BUD_DEAD, fbud);
-
2787 }
-
2788 if (shoot->shoot_parameters.determinate_shoot_growth) {
-
2789 shoot->terminateApicalBud();
-
2790 shoot->terminateAxillaryVegetativeBuds();
-
2791 }
-
2792 }
-
2793
-
2794 // -- Flower opening -- //
-
2795 } else if ((fbud.state == BUD_FLOWER_CLOSED && plant_instance.dd_to_flower_opening >= 0.f) ||
-
2796 (fbud.state == BUD_ACTIVE && plant_instance.dd_to_flower_initiation < 0.f && plant_instance.dd_to_flower_opening >= 0.f)) {
-
2797 if (fbud.time_counter >= plant_instance.dd_to_flower_opening) {
-
2798 fbud.time_counter = 0;
-
2799 if( fbud.state == BUD_FLOWER_CLOSED ) {
-
2800 phytomer->setFloralBudState(BUD_FLOWER_OPEN, fbud);
-
2801 }else{
-
2802 if (context_ptr->randu() < shoot->shoot_parameters.flower_bud_break_probability.val() ) {
-
2803 phytomer->setFloralBudState(BUD_FLOWER_OPEN, fbud);
-
2804 } else {
-
2805 phytomer->setFloralBudState(BUD_DEAD, fbud);
-
2806 }
-
2807 }
-
2808 if (shoot->shoot_parameters.determinate_shoot_growth) {
-
2809 shoot->terminateApicalBud();
-
2810 shoot->terminateAxillaryVegetativeBuds();
-
2811 }
-
2812 }
-
2813 }
-
2814 }
-
2815
-
2816 // -- Fruit Set -- //
-
2817 // If the flower bud is in a 'flowering' state, the fruit set occurs after a certain amount of time
-
2818 if (shoot->shoot_parameters.phytomer_parameters.inflorescence.fruit_prototype_function != nullptr) {
-
2819 if ((fbud.state == BUD_FLOWER_OPEN && plant_instance.dd_to_fruit_set >= 0.f) || //flower opened and fruit set is enabled
-
2820 (fbud.state == BUD_ACTIVE && plant_instance.dd_to_flower_initiation < 0.f && plant_instance.dd_to_flower_opening < 0.f && plant_instance.dd_to_fruit_set >= 0.f) || //jumped straight to fruit set with no flowering
-
2821 (fbud.state == BUD_FLOWER_CLOSED && plant_instance.dd_to_flower_opening < 0.f && plant_instance.dd_to_fruit_set >= 0.f)) { //jumped from closed flower to fruit set with no flower opening
-
2822 if (fbud.time_counter >= plant_instance.dd_to_fruit_set) {
-
2823 fbud.time_counter = 0;
-
2824 if (context_ptr->randu() < shoot->shoot_parameters.fruit_set_probability.val() ) {
-
2825 phytomer->setFloralBudState(BUD_FRUITING, fbud);
-
2826 } else {
-
2827 phytomer->setFloralBudState(BUD_DEAD, fbud);
-
2828 }
-
2829 if (shoot->shoot_parameters.determinate_shoot_growth) {
-
2830 shoot->terminateApicalBud();
-
2831 shoot->terminateAxillaryVegetativeBuds();
-
2832 }
-
2833 }
-
2834 }
-
2835 }
-
2836
-
2837 }
-
2838 }
-
2839
-
2840 }
-
2841
-
2842 // ****** GROWTH/SCALING OF CURRENT PHYTOMERS/FRUIT ****** //
-
2843
-
2844 int node_index = 0;
-
2845 for (auto &phytomer: shoot->phytomers) {
-
2846
-
2847 //scale internode length
-
2848 if (phytomer->current_internode_scale_factor < 1) {
-
2849 float dL_internode = dt_max * shoot->shoot_parameters.elongation_rate.val() * phytomer->internode_length_max;
-
2850 float length_scale = fmin(1.f, (phytomer->getInternodeLength() + dL_internode) / phytomer->internode_length_max);
-
2851 phytomer->setInternodeLengthScaleFraction(length_scale, false);
-
2852 }
-
2853
-
2854 //scale internode girth
-
2855 float inode_radius = phytomer->getInternodeRadius();
-
2856 if (inode_radius < phytomer->internode_radius_max) {
-
2857 float dR = (1.f + dt_max * shoot->shoot_parameters.girth_growth_rate.val() / inode_radius);
-
2858 incrementPhytomerInternodeGirth(plantID, shoot->ID, node_index, dR, false);
-
2859 }
-
2860
-
2861 node_index++;
-
2862 }
-
2863
-
2864 node_index = 0;
-
2865 for (auto &phytomer: shoot->phytomers) {
-
2866
-
2867 //scale petiole/leaves
-
2868 if (phytomer->hasLeaf() && phytomer->current_leaf_scale_factor <= 1) {
-
2869 float tip_ind = ceil(float(phytomer->leaf_size_max.front().size()-1)/2.f);
-
2870 float leaf_length = phytomer->current_leaf_scale_factor * phytomer->leaf_size_max.front().at(tip_ind);
-
2871 float dL_leaf = dt_max * shoot->shoot_parameters.elongation_rate.val() * phytomer->leaf_size_max.front().at(tip_ind);
-
2872 float scale = fmin(1.f, (leaf_length + dL_leaf) / phytomer->phytomer_parameters.leaf.prototype_scale.val() );
-
2873 phytomer->setLeafScaleFraction(scale);
-
2874 }
-
2875
-
2876 //Fruit Growth
-
2877 for (auto &petiole: phytomer->floral_buds) {
-
2878 for (auto &fbud: petiole) {
-
2879
-
2880 // If the floral bud it in a 'fruiting' state, the fruit grows with time
-
2881 if (fbud.state == BUD_FRUITING && fbud.time_counter > 0) {
-
2882 float scale = fmin(1, 0.25f + 0.75f * fbud.time_counter / plant_instance.dd_to_fruit_maturity);
-
2883 phytomer->setInflorescenceScaleFraction(fbud, scale);
-
2884 }
-
2885 }
-
2886 }
-
2887
-
2888 // ****** NEW CHILD SHOOTS FROM VEGETATIVE BUDS ****** //
-
2889 uint parent_petiole_index = 0;
-
2890 for (auto &petiole: phytomer->axillary_vegetative_buds) {
-
2891 for (auto &vbud: petiole) {
-
2892
-
2893 if (vbud.state == BUD_ACTIVE && phytomer->age + dt_max > shoot->shoot_parameters.vegetative_bud_break_time.val()) {
-
2894
-
2895 ShootParameters *new_shoot_parameters = &shoot_types.at(vbud.shoot_type_label);
-
2896 int parent_node_count = shoot->current_node_number;
-
2897
-
2898 float insertion_angle_adjustment = fmin(new_shoot_parameters->insertion_angle_tip.val() + new_shoot_parameters->insertion_angle_decay_rate.val() * float(parent_node_count - phytomer->shoot_index.x - 1), 90.f);
-
2899 AxisRotation base_rotation = make_AxisRotation(deg2rad(insertion_angle_adjustment), deg2rad(new_shoot_parameters->base_yaw.val()), deg2rad(new_shoot_parameters->base_roll.val()));
-
2900 new_shoot_parameters->base_yaw.resample();
-
2901
-
2902 //scale the shoot internode length based on proximity from the tip
-
2903 float internode_length_max;
-
2904 if (new_shoot_parameters->growth_requires_dormancy) {
-
2905 internode_length_max = fmax(new_shoot_parameters->internode_length_max.val() - new_shoot_parameters->internode_length_decay_rate.val() * float(parent_node_count - phytomer->shoot_index.x - 1),
-
2906 new_shoot_parameters->internode_length_min.val());
-
2907 } else {
-
2908 internode_length_max = new_shoot_parameters->internode_length_max.val();
-
2909 }
-
2910
-
2911 float internode_radius = shoot_types.at(vbud.shoot_type_label).internode_radius_initial.val();
-
2912
-
2913// std::cout << "Adding child shoot of type " << vbud.shoot_type_label << std::endl;
-
2914
-
2915 uint childID = addChildShoot(plantID, shoot->ID, node_index, 1, base_rotation, internode_radius, internode_length_max, 0.01, 0.01, 0, vbud.shoot_type_label, parent_petiole_index);
-
2916
-
2917 phytomer->setVegetativeBudState( BUD_DEAD, vbud );
-
2918 vbud.shoot_ID = childID;
-
2919 shoot_tree->at(childID)->isdormant = false;
-
2920
-
2921 }
-
2922
-
2923 }
-
2924 parent_petiole_index++;
-
2925 }
-
2926
-
2927 // check for ground collisions
-
2928 if( ground_clipping_height!=-99999 ){
-
2929
-
2930 // internode
-
2931 if ( (phytomer->shoot_index.x==0 && phytomer->rank>0 ) && context_ptr->doesObjectExist(shoot->internode_tube_objID) && detectGroundCollision( shoot->internode_tube_objID ) ) {
-
2932 context_ptr->deleteObject(shoot->internode_tube_objID);
-
2933 shoot->terminateApicalBud();
-
2934 }
-
2935
-
2936 // leaves
-
2937 for( uint petiole=0; petiole<phytomer->leaf_objIDs.size(); petiole++ ) {
-
2938
-
2939 if ( detectGroundCollision(phytomer->leaf_objIDs.at(petiole)) ) {
-
2940 context_ptr->deleteObject(phytomer->leaf_objIDs.at(petiole));
-
2941 phytomer->leaf_objIDs.at(petiole).clear();
-
2942 phytomer->leaf_bases.at(petiole).clear();
-
2943 context_ptr->deleteObject(phytomer->petiole_objIDs.at(petiole));
-
2944 phytomer->petiole_objIDs.at(petiole).clear();
-
2945 }
+
2776 if (phytomer->floral_buds.empty() ) { //no floral buds - skip this phytomer
+
2777 continue;
+
2778 }
+
2779
+
2780 for (auto &petiole: phytomer->floral_buds) {
+
2781 for (auto &fbud: petiole) {
+
2782
+
2783 if (fbud.state != BUD_DORMANT && fbud.state != BUD_DEAD) {
+
2784 fbud.time_counter += dt_max;
+
2785 }
+
2786
+
2787 // -- Flowering -- //
+
2788 if (shoot->shoot_parameters.phytomer_parameters.inflorescence.flower_prototype_function != nullptr) { //user defined a flower prototype function
+
2789 // -- Flower initiation (closed flowers) -- //
+
2790 if (fbud.state == BUD_ACTIVE && plant_instance.dd_to_flower_initiation >= 0.f) { //bud is active and flower initiation is enabled
+
2791 if ((!shoot->shoot_parameters.flowers_require_dormancy && plant_instance.current_age >= plant_instance.dd_to_flower_initiation) ||
+
2792 (shoot->shoot_parameters.flowers_require_dormancy && phytomer->time_since_dormancy >= plant_instance.dd_to_flower_initiation)) {
+
2793 fbud.time_counter = 0;
+
2794 if (context_ptr->randu() < shoot->shoot_parameters.flower_bud_break_probability.val() ) {
+
2795 phytomer->setFloralBudState(BUD_FLOWER_CLOSED, fbud);
+
2796 } else {
+
2797 phytomer->setFloralBudState(BUD_DEAD, fbud);
+
2798 }
+
2799 if (shoot->shoot_parameters.determinate_shoot_growth) {
+
2800 shoot->terminateApicalBud();
+
2801 shoot->terminateAxillaryVegetativeBuds();
+
2802 }
+
2803 }
+
2804
+
2805 // -- Flower opening -- //
+
2806 } else if ((fbud.state == BUD_FLOWER_CLOSED && plant_instance.dd_to_flower_opening >= 0.f) ||
+
2807 (fbud.state == BUD_ACTIVE && plant_instance.dd_to_flower_initiation < 0.f && plant_instance.dd_to_flower_opening >= 0.f)) {
+
2808 if (fbud.time_counter >= plant_instance.dd_to_flower_opening) {
+
2809 fbud.time_counter = 0;
+
2810 if( fbud.state == BUD_FLOWER_CLOSED ) {
+
2811 phytomer->setFloralBudState(BUD_FLOWER_OPEN, fbud);
+
2812 }else{
+
2813 if (context_ptr->randu() < shoot->shoot_parameters.flower_bud_break_probability.val() ) {
+
2814 phytomer->setFloralBudState(BUD_FLOWER_OPEN, fbud);
+
2815 } else {
+
2816 phytomer->setFloralBudState(BUD_DEAD, fbud);
+
2817 }
+
2818 }
+
2819 if (shoot->shoot_parameters.determinate_shoot_growth) {
+
2820 shoot->terminateApicalBud();
+
2821 shoot->terminateAxillaryVegetativeBuds();
+
2822 }
+
2823 }
+
2824 }
+
2825 }
+
2826
+
2827 // -- Fruit Set -- //
+
2828 // If the flower bud is in a 'flowering' state, the fruit set occurs after a certain amount of time
+
2829 if (shoot->shoot_parameters.phytomer_parameters.inflorescence.fruit_prototype_function != nullptr) {
+
2830 if ((fbud.state == BUD_FLOWER_OPEN && plant_instance.dd_to_fruit_set >= 0.f) || //flower opened and fruit set is enabled
+
2831 (fbud.state == BUD_ACTIVE && plant_instance.dd_to_flower_initiation < 0.f && plant_instance.dd_to_flower_opening < 0.f && plant_instance.dd_to_fruit_set >= 0.f) || //jumped straight to fruit set with no flowering
+
2832 (fbud.state == BUD_FLOWER_CLOSED && plant_instance.dd_to_flower_opening < 0.f && plant_instance.dd_to_fruit_set >= 0.f)) { //jumped from closed flower to fruit set with no flower opening
+
2833 if (fbud.time_counter >= plant_instance.dd_to_fruit_set) {
+
2834 fbud.time_counter = 0;
+
2835 if (context_ptr->randu() < shoot->shoot_parameters.fruit_set_probability.val() ) {
+
2836 phytomer->setFloralBudState(BUD_FRUITING, fbud);
+
2837 } else {
+
2838 phytomer->setFloralBudState(BUD_DEAD, fbud);
+
2839 }
+
2840 if (shoot->shoot_parameters.determinate_shoot_growth) {
+
2841 shoot->terminateApicalBud();
+
2842 shoot->terminateAxillaryVegetativeBuds();
+
2843 }
+
2844 }
+
2845 }
+
2846 }
+
2847
+
2848 }
+
2849 }
+
2850
+
2851 }
+
2852
+
2853 // ****** GROWTH/SCALING OF CURRENT PHYTOMERS/FRUIT ****** //
+
2854
+
2855 int node_index = 0;
+
2856 for (auto &phytomer: shoot->phytomers) {
+
2857
+
2858 //scale internode length
+
2859 if (phytomer->current_internode_scale_factor < 1) {
+
2860 float dL_internode = dt_max * shoot->shoot_parameters.elongation_rate.val() * phytomer->internode_length_max;
+
2861 float length_scale = fmin(1.f, (phytomer->getInternodeLength() + dL_internode) / phytomer->internode_length_max);
+
2862 phytomer->setInternodeLengthScaleFraction(length_scale, false);
+
2863 }
+
2864
+
2865 //scale internode girth
+
2866 float inode_radius = phytomer->getInternodeRadius();
+
2867 if (inode_radius < phytomer->internode_radius_max && shoot->shoot_parameters.girth_area_factor.val()>0.f ) {
+
2868 incrementPhytomerInternodeGirth(plantID, shoot->ID, node_index, false);
+
2869 }
+
2870
+
2871 node_index++;
+
2872 }
+
2873
+
2874 node_index = 0;
+
2875 for (auto &phytomer: shoot->phytomers) {
+
2876
+
2877 //scale petiole/leaves
+
2878 if (phytomer->hasLeaf() && phytomer->current_leaf_scale_factor <= 1) {
+
2879 float tip_ind = ceil(float(phytomer->leaf_size_max.front().size()-1)/2.f);
+
2880 float leaf_length = phytomer->current_leaf_scale_factor * phytomer->leaf_size_max.front().at(tip_ind);
+
2881 float dL_leaf = dt_max * shoot->shoot_parameters.elongation_rate.val() * phytomer->leaf_size_max.front().at(tip_ind);
+
2882 float scale = fmin(1.f, (leaf_length + dL_leaf) / phytomer->phytomer_parameters.leaf.prototype_scale.val() );
+
2883 phytomer->phytomer_parameters.leaf.prototype_scale.resample();
+
2884 phytomer->setLeafScaleFraction(scale);
+
2885 }
+
2886
+
2887 //Fruit Growth
+
2888 for (auto &petiole: phytomer->floral_buds) {
+
2889 for (auto &fbud: petiole) {
+
2890
+
2891 // If the floral bud it in a 'fruiting' state, the fruit grows with time
+
2892 if (fbud.state == BUD_FRUITING && fbud.time_counter > 0) {
+
2893 float scale = fmin(1, 0.25f + 0.75f * fbud.time_counter / plant_instance.dd_to_fruit_maturity);
+
2894 phytomer->setInflorescenceScaleFraction(fbud, scale);
+
2895 }
+
2896 }
+
2897 }
+
2898
+
2899 // ****** NEW CHILD SHOOTS FROM VEGETATIVE BUDS ****** //
+
2900 uint parent_petiole_index = 0;
+
2901 for (auto &petiole: phytomer->axillary_vegetative_buds) {
+
2902 for (auto &vbud: petiole) {
+
2903
+
2904 if (vbud.state == BUD_ACTIVE && phytomer->age + dt_max > shoot->shoot_parameters.vegetative_bud_break_time.val()) {
+
2905
+
2906 ShootParameters *new_shoot_parameters = &shoot_types.at(vbud.shoot_type_label);
+
2907 int parent_node_count = shoot->current_node_number;
+
2908
+
2909// float insertion_angle_adjustment = fmin(new_shoot_parameters->insertion_angle_tip.val() + new_shoot_parameters->insertion_angle_decay_rate.val() * float(parent_node_count - phytomer->shoot_index.x - 1), 90.f);
+
2910// AxisRotation base_rotation = make_AxisRotation(deg2rad(insertion_angle_adjustment), deg2rad(new_shoot_parameters->base_yaw.val()), deg2rad(new_shoot_parameters->base_roll.val()));
+
2911// new_shoot_parameters->base_yaw.resample();
+
2912// if( new_shoot_parameters->insertion_angle_decay_rate.val()==0 ){
+
2913// new_shoot_parameters->insertion_angle_tip.resample();
+
2914// }
+
2915 float insertion_angle_adjustment = fmin(shoot->shoot_parameters.insertion_angle_tip.val() + shoot->shoot_parameters.insertion_angle_decay_rate.val() * float(parent_node_count - phytomer->shoot_index.x - 1), 90.f);
+
2916 AxisRotation base_rotation = make_AxisRotation(deg2rad(insertion_angle_adjustment), deg2rad(new_shoot_parameters->base_yaw.val()), deg2rad(new_shoot_parameters->base_roll.val()));
+
2917 new_shoot_parameters->base_yaw.resample();
+
2918 if( shoot->shoot_parameters.insertion_angle_decay_rate.val()==0 ){
+
2919 shoot->shoot_parameters.insertion_angle_tip.resample();
+
2920 }
+
2921
+
2922 //scale the shoot internode length based on proximity from the tip
+
2923 float internode_length_max;
+
2924 if (new_shoot_parameters->growth_requires_dormancy) {
+
2925 internode_length_max = fmax(new_shoot_parameters->internode_length_max.val() - new_shoot_parameters->internode_length_decay_rate.val() * float(parent_node_count - phytomer->shoot_index.x - 1),
+
2926 new_shoot_parameters->internode_length_min.val());
+
2927 } else {
+
2928 internode_length_max = new_shoot_parameters->internode_length_max.val();
+
2929 }
+
2930
+
2931 float internode_radius = shoot_types.at(vbud.shoot_type_label).internode_radius_initial.val();
+
2932
+
2933// std::cout << "Adding child shoot of type " << vbud.shoot_type_label << std::endl;
+
2934
+
2935 uint childID = addChildShoot(plantID, shoot->ID, node_index, 1, base_rotation, internode_radius, internode_length_max, 0.01, 0.01, 0, vbud.shoot_type_label, parent_petiole_index);
+
2936
+
2937 phytomer->setVegetativeBudState( BUD_DEAD, vbud );
+
2938 vbud.shoot_ID = childID;
+
2939 shoot_tree->at(childID)->isdormant = false;
+
2940
+
2941 }
+
2942
+
2943 }
+
2944 parent_petiole_index++;
+
2945 }
2946
-
2947 }
-
2948
-
2949 //inflorescence
-
2950 for( auto &petiole : phytomer->floral_buds ) {
-
2951 for( auto &fbud : petiole ){
-
2952 for( int p=fbud.inflorescence_objIDs.size()-1; p>=0; p-- ){
-
2953 uint objID = fbud.inflorescence_objIDs.at(p);
-
2954 if ( detectGroundCollision(objID) ) {
-
2955 context_ptr->deleteObject(objID);
-
2956 fbud.inflorescence_objIDs.erase( fbud.inflorescence_objIDs.begin()+p );
-
2957 }
-
2958 }
-
2959 for( int p=fbud.peduncle_objIDs.size()-1; p>=0; p-- ){
-
2960 uint objID = fbud.peduncle_objIDs.at(p);
-
2961 if ( detectGroundCollision(objID) ) {
-
2962 context_ptr->deleteObject(fbud.peduncle_objIDs);
-
2963 context_ptr->deleteObject(fbud.inflorescence_objIDs);
-
2964 fbud.peduncle_objIDs.clear();
-
2965 fbud.inflorescence_objIDs.clear();
-
2966 break;
-
2967 }
-
2968 }
-
2969 }
-
2970 }
-
2971
-
2972 }
-
2973
-
2974 if( output_object_data.at("age") ) {
-
2975 if (shoot->build_context_geometry_internode) {
-
2976 //\todo This is redundant and only needs to be done once per shoot
-
2977 if( context_ptr->doesObjectExist(shoot->internode_tube_objID) ) {
-
2978 context_ptr->setObjectData(shoot->internode_tube_objID, "age", phytomer->age);
-
2979 }
-
2980 }
-
2981 if (phytomer->build_context_geometry_petiole) {
-
2982 context_ptr->setObjectData(phytomer->petiole_objIDs, "age", phytomer->age);
-
2983 }
-
2984 context_ptr->setObjectData(phytomer->leaf_objIDs, "age", phytomer->age);
-
2985 }
-
2986
-
2987 node_index++;
-
2988 }
-
2989
-
2990 // if shoot has reached max_nodes, stop apical growth
-
2991 if (shoot->current_node_number >= shoot->shoot_parameters.max_nodes.val()) {
-
2992 shoot->terminateApicalBud();
-
2993 }
-
2994
-
2995 // If the apical bud is dead, don't do anything more with the shoot
-
2996 if (!shoot->meristem_is_alive) {
-
2997 continue;
-
2998 }
-
2999
-
3000 // ****** PHYLLOCHRON - NEW PHYTOMERS ****** //
-
3001 shoot->phyllochron_counter += dt_max;
-
3002 if (shoot->phyllochron_counter >= float(shoot->shoot_parameters.leaf_flush_count) * shoot->shoot_parameters.phyllochron.val()) {
-
3003 float internode_radius = shoot->shoot_parameters.internode_radius_initial.val();
-
3004 float internode_length_max = shoot->internode_length_max_shoot_initial;
-
3005 for (int leaf = 0; leaf < shoot->shoot_parameters.leaf_flush_count; leaf++) {
-
3006 appendPhytomerToShoot(plantID, shoot->ID, shoot_types.at(shoot->shoot_type_label).phytomer_parameters, internode_radius, internode_length_max, 0.01, 0.01); //\todo These factors should be set to be consistent with the shoot
-
3007 }
-
3008 shoot->shoot_parameters.phyllochron.resample();
-
3009 shoot->phyllochron_counter = shoot->phyllochron_counter - float(shoot->shoot_parameters.leaf_flush_count) * shoot->shoot_parameters.phyllochron.val();
-
3010 }
-
3011
-
3012 // ****** EPICORMIC SHOOTS ****** //
-
3013 std::string epicormic_shoot_label = plant_instance.epicormic_shoot_probability_perlength_per_day.first;
-
3014 if( !epicormic_shoot_label.empty() ) {
-
3015 std::vector<float> epicormic_fraction;
-
3016 uint Nepicormic = shoot->sampleEpicormicShoot(dt, epicormic_fraction);
-
3017 for (int s = 0; s < Nepicormic; s++) {
-
3018 float internode_radius = shoot_types.at(epicormic_shoot_label).internode_radius_initial.val();
-
3019 shoot_types.at(epicormic_shoot_label).internode_radius_initial.resample();
-
3020 float internode_length_max = shoot_types.at(epicormic_shoot_label).internode_length_max.val();
-
3021 shoot_types.at(epicormic_shoot_label).internode_length_max.resample();
-
3022 std::cout << "Adding epicormic shoot" << std::endl;
-
3023 addEpicormicShoot(plantID, shoot->ID, epicormic_fraction.at(s), 1, 0, internode_radius, internode_length_max, 0.01, 0.01, 0, epicormic_shoot_label);
-
3024 }
-
3025 }
-
3026
-
3027 // **** subtract maintenance carbon costs **** //
-
3028 subtractShootMaintenanceCarbon(dt_max);
-
3029
-
3030 if( output_object_data.find("carbohydrate_concentration")!=output_object_data.end() ){
-
3031 float shoot_volume = shoot->calculateShootInternodeVolume();
-
3032 context_ptr->setObjectData( shoot->internode_tube_objID, "carbohydrate_concentration", shoot->carbohydrate_pool_molC / shoot_volume );
-
3033 }
-
3034
-
3035 }
-
3036
-
3037 }
-
3038
-
3039 //update Context geometry
-
3040 shoot_tree->front()->updateShootNodes(true);
-
3041
-
3042}
-
-
3043
-
3044std::vector<uint> makeTubeFromCones(uint radial_subdivisions, const std::vector<helios::vec3> &vertices, const std::vector<float> &radii, const std::vector<helios::RGBcolor> &colors, helios::Context *context_ptr) {
-
3045
-
3046 uint Nverts = vertices.size();
-
3047
-
3048 if( radii.size()!=Nverts || colors.size()!=Nverts ){
-
3049 helios_runtime_error("ERROR (makeTubeFromCones): Length of vertex vectors is not consistent.");
-
3050 }
-
3051
-
3052 std::vector<uint> objIDs(Nverts-1);
-
3053
-
3054 for( uint v=0; v<Nverts-1; v++ ){
-
3055
-
3056 objIDs.at(v) = context_ptr->addConeObject(radial_subdivisions, vertices.at(v), vertices.at(v + 1), radii.at(v), radii.at(v + 1), colors.at(v) );
-
3057
-
3058 }
-
3059
-
3060 return objIDs;
+
2947 // check for ground collisions
+
2948 if( ground_clipping_height!=-99999 ){
+
2949
+
2950 // internode
+
2951 if ( (phytomer->shoot_index.x==0 && phytomer->rank>0 ) && context_ptr->doesObjectExist(shoot->internode_tube_objID) && detectGroundCollision( shoot->internode_tube_objID ) ) {
+
2952 context_ptr->deleteObject(shoot->internode_tube_objID);
+
2953 shoot->terminateApicalBud();
+
2954 }
+
2955
+
2956 // leaves
+
2957 for( uint petiole=0; petiole<phytomer->leaf_objIDs.size(); petiole++ ) {
+
2958
+
2959 if ( detectGroundCollision(phytomer->leaf_objIDs.at(petiole)) ) {
+
2960 context_ptr->deleteObject(phytomer->leaf_objIDs.at(petiole));
+
2961 phytomer->leaf_objIDs.at(petiole).clear();
+
2962 phytomer->leaf_bases.at(petiole).clear();
+
2963 context_ptr->deleteObject(phytomer->petiole_objIDs.at(petiole));
+
2964 phytomer->petiole_objIDs.at(petiole).clear();
+
2965 }
+
2966
+
2967 }
+
2968
+
2969 //inflorescence
+
2970 for( auto &petiole : phytomer->floral_buds ) {
+
2971 for( auto &fbud : petiole ){
+
2972 for( int p=fbud.inflorescence_objIDs.size()-1; p>=0; p-- ){
+
2973 uint objID = fbud.inflorescence_objIDs.at(p);
+
2974 if ( detectGroundCollision(objID) ) {
+
2975 context_ptr->deleteObject(objID);
+
2976 fbud.inflorescence_objIDs.erase( fbud.inflorescence_objIDs.begin()+p );
+
2977 }
+
2978 }
+
2979 for( int p=fbud.peduncle_objIDs.size()-1; p>=0; p-- ){
+
2980 uint objID = fbud.peduncle_objIDs.at(p);
+
2981 if ( detectGroundCollision(objID) ) {
+
2982 context_ptr->deleteObject(fbud.peduncle_objIDs);
+
2983 context_ptr->deleteObject(fbud.inflorescence_objIDs);
+
2984 fbud.peduncle_objIDs.clear();
+
2985 fbud.inflorescence_objIDs.clear();
+
2986 break;
+
2987 }
+
2988 }
+
2989 }
+
2990 }
+
2991
+
2992 }
+
2993
+
2994 if( output_object_data.at("age") ) {
+
2995 if (shoot->build_context_geometry_internode) {
+
2996 //\todo This is redundant and only needs to be done once per shoot
+
2997 if( context_ptr->doesObjectExist(shoot->internode_tube_objID) ) {
+
2998 context_ptr->setObjectData(shoot->internode_tube_objID, "age", phytomer->age);
+
2999 }
+
3000 }
+
3001 if (phytomer->build_context_geometry_petiole) {
+
3002 context_ptr->setObjectData(phytomer->petiole_objIDs, "age", phytomer->age);
+
3003 }
+
3004 context_ptr->setObjectData(phytomer->leaf_objIDs, "age", phytomer->age);
+
3005 }
+
3006
+
3007 node_index++;
+
3008 }
+
3009
+
3010 // if shoot has reached max_nodes, stop apical growth
+
3011 if (shoot->current_node_number >= shoot->shoot_parameters.max_nodes.val()) {
+
3012 shoot->terminateApicalBud();
+
3013 }
+
3014
+
3015 // If the apical bud is dead, don't do anything more with the shoot
+
3016 if (!shoot->meristem_is_alive) {
+
3017 continue;
+
3018 }
+
3019
+
3020 // ****** PHYLLOCHRON - NEW PHYTOMERS ****** //
+
3021 shoot->phyllochron_counter += dt_max;
+
3022 if (shoot->phyllochron_counter >= float(shoot->shoot_parameters.leaf_flush_count) * shoot->shoot_parameters.phyllochron.val()) {
+
3023 float internode_radius = shoot->shoot_parameters.internode_radius_initial.val();
+
3024 float internode_length_max = shoot->internode_length_max_shoot_initial;
+
3025 for (int leaf = 0; leaf < shoot->shoot_parameters.leaf_flush_count; leaf++) {
+
3026 appendPhytomerToShoot(plantID, shoot->ID, shoot_types.at(shoot->shoot_type_label).phytomer_parameters, internode_radius, internode_length_max, 0.01, 0.01); //\todo These factors should be set to be consistent with the shoot
+
3027 }
+
3028 shoot->shoot_parameters.phyllochron.resample();
+
3029 shoot->phyllochron_counter = shoot->phyllochron_counter - float(shoot->shoot_parameters.leaf_flush_count) * shoot->shoot_parameters.phyllochron.val();
+
3030 }
+
3031
+
3032 // ****** EPICORMIC SHOOTS ****** //
+
3033 std::string epicormic_shoot_label = plant_instance.epicormic_shoot_probability_perlength_per_day.first;
+
3034 if( !epicormic_shoot_label.empty() ) {
+
3035 std::vector<float> epicormic_fraction;
+
3036 uint Nepicormic = shoot->sampleEpicormicShoot(dt, epicormic_fraction);
+
3037 for (int s = 0; s < Nepicormic; s++) {
+
3038 float internode_radius = shoot_types.at(epicormic_shoot_label).internode_radius_initial.val();
+
3039 shoot_types.at(epicormic_shoot_label).internode_radius_initial.resample();
+
3040 float internode_length_max = shoot_types.at(epicormic_shoot_label).internode_length_max.val();
+
3041 shoot_types.at(epicormic_shoot_label).internode_length_max.resample();
+
3042 std::cout << "Adding epicormic shoot" << std::endl;
+
3043 addEpicormicShoot(plantID, shoot->ID, epicormic_fraction.at(s), 1, 0, internode_radius, internode_length_max, 0.01, 0.01, 0, epicormic_shoot_label);
+
3044 }
+
3045 }
+
3046
+
3047 // **** subtract maintenance carbon costs **** //
+
3048 subtractShootMaintenanceCarbon(dt_max);
+
3049
+
3050 if( output_object_data.find("carbohydrate_concentration")!=output_object_data.end() ){
+
3051 float shoot_volume = shoot->calculateShootInternodeVolume();
+
3052 context_ptr->setObjectData( shoot->internode_tube_objID, "carbohydrate_concentration", shoot->carbohydrate_pool_molC / shoot_volume );
+
3053 }
+
3054
+
3055 }
+
3056
+
3057 }
+
3058
+
3059 //update Context geometry
+
3060 shoot_tree->front()->updateShootNodes(true);
3061
3062}
-
3063
-
3064bool PlantArchitecture::detectGroundCollision(uint objID) {
-
3065 std::vector<uint> objIDs = {objID};
-
3066 return detectGroundCollision(objIDs);
-
3067}
-
3068
-
3069bool PlantArchitecture::detectGroundCollision(const std::vector<uint> &objID) {
-
3070
-
3071 for( uint ID : objID ){
-
3072 if( context_ptr->doesObjectExist(ID) ) {
-
3073 const std::vector<uint> &UUIDs = context_ptr->getObjectPrimitiveUUIDs(ID);
-
3074 for (uint UUID: UUIDs) {
-
3075 const std::vector<vec3> &vertices = context_ptr->getPrimitiveVertices(UUID);
-
3076 for (const vec3 &v: vertices) {
-
3077 if (v.z < ground_clipping_height) {
-
3078 return true;
-
3079 }
-
3080 }
-
3081 }
-
3082 }
-
3083 }
-
3084 return false;
-
3085
-
3086}
-
3087
-
-
3088void PlantArchitecture::optionalOutputObjectData( const std::string &object_data_label ){
-
3089 if( output_object_data.find(object_data_label)==output_object_data.end() ){
-
3090 std::cerr << "WARNING (PlantArchitecture::optionalOutputObjectData): Output object data of '" << object_data_label << "' is not a valid option." << std::endl;
-
3091 return;
-
3092 }
-
3093 output_object_data.at(object_data_label) = true;
-
3094}
-
3095
-
-
3096void PlantArchitecture::optionalOutputObjectData( const std::vector<std::string> &object_data_labels ){
-
3097 for( auto &label : object_data_labels){
-
3098 if( output_object_data.find(label)==output_object_data.end() ){
-
3099 std::cerr << "WARNING (PlantArchitecture::optionalOutputObjectData): Output object data of '" << label << "' is not a valid option." << std::endl;
-
3100 continue;
-
3101 }
-
3102 output_object_data.at(label) = true;
+
3063
+
3064std::vector<uint> makeTubeFromCones(uint radial_subdivisions, const std::vector<helios::vec3> &vertices, const std::vector<float> &radii, const std::vector<helios::RGBcolor> &colors, helios::Context *context_ptr) {
+
3065
+
3066 uint Nverts = vertices.size();
+
3067
+
3068 if( radii.size()!=Nverts || colors.size()!=Nverts ){
+
3069 helios_runtime_error("ERROR (makeTubeFromCones): Length of vertex vectors is not consistent.");
+
3070 }
+
3071
+
3072 std::vector<uint> objIDs(Nverts-1);
+
3073
+
3074 for( uint v=0; v<Nverts-1; v++ ){
+
3075
+
3076 objIDs.at(v) = context_ptr->addConeObject(radial_subdivisions, vertices.at(v), vertices.at(v + 1), radii.at(v), radii.at(v + 1), colors.at(v) );
+
3077
+
3078 }
+
3079
+
3080 return objIDs;
+
3081
+
3082}
+
3083
+
3084bool PlantArchitecture::detectGroundCollision(uint objID) {
+
3085 std::vector<uint> objIDs = {objID};
+
3086 return detectGroundCollision(objIDs);
+
3087}
+
3088
+
3089bool PlantArchitecture::detectGroundCollision(const std::vector<uint> &objID) {
+
3090
+
3091 for( uint ID : objID ){
+
3092 if( context_ptr->doesObjectExist(ID) ) {
+
3093 const std::vector<uint> &UUIDs = context_ptr->getObjectPrimitiveUUIDs(ID);
+
3094 for (uint UUID: UUIDs) {
+
3095 const std::vector<vec3> &vertices = context_ptr->getPrimitiveVertices(UUID);
+
3096 for (const vec3 &v: vertices) {
+
3097 if (v.z < ground_clipping_height) {
+
3098 return true;
+
3099 }
+
3100 }
+
3101 }
+
3102 }
3103 }
-
3104}
+
3104 return false;
+
3105
+
3106}
+
3107
+
+
3108void PlantArchitecture::optionalOutputObjectData( const std::string &object_data_label ){
+
3109 if( output_object_data.find(object_data_label)==output_object_data.end() ){
+
3110 std::cerr << "WARNING (PlantArchitecture::optionalOutputObjectData): Output object data of '" << object_data_label << "' is not a valid option." << std::endl;
+
3111 return;
+
3112 }
+
3113 output_object_data.at(object_data_label) = true;
+
3114}
+
+
3115
+
+
3116void PlantArchitecture::optionalOutputObjectData( const std::vector<std::string> &object_data_labels ){
+
3117 for( auto &label : object_data_labels){
+
3118 if( output_object_data.find(label)==output_object_data.end() ){
+
3119 std::cerr << "WARNING (PlantArchitecture::optionalOutputObjectData): Output object data of '" << label << "' is not a valid option." << std::endl;
+
3120 continue;
+
3121 }
+
3122 output_object_data.at(label) = true;
+
3123 }
+
3124}
-
interpolateTube
helios::vec3 interpolateTube(const std::vector< helios::vec3 > &P, float frac)
Interpolate the position of a point along a tube.
Definition CanopyGenerator.cpp:2985
+
interpolateTube
helios::vec3 interpolateTube(const std::vector< helios::vec3 > &P, float frac)
Interpolate the position of a point along a tube.
Definition CanopyGenerator.cpp:3226
interpolateTube
float interpolateTube(const std::vector< float > &P, float frac)
Interpolate the radius of a point along a tube.
Definition PlantArchitecture.cpp:22
makeTubeFromCones
std::vector< uint > makeTubeFromCones(uint radial_subdivisions, const std::vector< helios::vec3 > &vertices, const std::vector< float > &radii, const std::vector< helios::RGBcolor > &colors, helios::Context *context_ptr)
Add geometry to the Context consisting of a series of Cone objects to form a tube-like shape.
- -
PlantArchitecture::addPlantInstance
uint addPlantInstance(const helios::vec3 &base_position, float current_age)
Create an instance of a plant.
Definition PlantArchitecture.cpp:2558
-
PlantArchitecture::addChildShoot
uint addChildShoot(uint plantID, int parent_shoot_ID, uint parent_node_index, uint current_node_number, const AxisRotation &shoot_base_rotation, float internode_radius, float internode_length_max, float internode_length_scale_factor_fraction, float leaf_scale_factor_fraction, float radius_taper, const std::string &shoot_type_label, uint petiole_index=0)
Manually add a child shoot at the axillary bud of a phytomer.
Definition PlantArchitecture.cpp:1943
-
PlantArchitecture::appendPhytomerToShoot
int appendPhytomerToShoot(uint plantID, uint shootID, const PhytomerParameters &phytomer_parameters, float internode_radius, float internode_length_max, float internode_length_scale_factor_fraction, float leaf_scale_factor_fraction)
Add a new phytomer at the terminal bud of a shoot.
Definition PlantArchitecture.cpp:2025
-
PlantArchitecture::getPlantFlowerObjectIDs
std::vector< uint > getPlantFlowerObjectIDs(uint plantID) const
Get object IDs for all inflorescence objects for a given plant.
Definition PlantArchitecture.cpp:2504
-
PlantArchitecture::appendShoot
uint appendShoot(uint plantID, int parent_shoot_ID, uint current_node_number, const AxisRotation &base_rotation, float internode_radius, float internode_length_max, float internode_length_scale_factor_fraction, float leaf_scale_factor_fraction, float radius_taper, const std::string &shoot_type_label)
Manually append a new shoot at the end of an existing shoot. This is used when the characteristics of...
Definition PlantArchitecture.cpp:1898
-
PlantArchitecture::enableGroundClipping
void enableGroundClipping(float ground_height=0.f)
Enable automatic removal of organs that are below the ground plane.
Definition PlantArchitecture.cpp:2105
-
PlantArchitecture::addBaseStemShoot
uint addBaseStemShoot(uint plantID, uint current_node_number, const AxisRotation &base_rotation, float internode_radius, float internode_length_max, float internode_length_scale_factor_fraction, float leaf_scale_factor_fraction, float radius_taper, const std::string &shoot_type_label)
Define the stem/trunk shoot (base of plant) to start a new plant. This requires a plant instance has ...
Definition PlantArchitecture.cpp:1866
-
PlantArchitecture::getAllPlantUUIDs
std::vector< uint > getAllPlantUUIDs(uint plantID) const
Get primitive UUIDs for all primitives in a given plant.
Definition PlantArchitecture.cpp:2416
-
PlantArchitecture::getPlantInternodeObjectIDs
std::vector< uint > getPlantInternodeObjectIDs(uint plantID) const
Get object IDs for all internode (Tube) objects for a given plant.
Definition PlantArchitecture.cpp:2420
-
PlantArchitecture::buildPlantCanopyFromLibrary
std::vector< uint > buildPlantCanopyFromLibrary(const helios::vec3 &canopy_center_position, const helios::vec2 &plant_spacing_xy, const helios::int2 &plant_count_xy, float age)
Build a canopy of regularly spaced plants based on the model currently loaded from the library.
Definition PlantArchitecture.cpp:217
-
PlantArchitecture::disablePeduncleContextBuild
void disablePeduncleContextBuild()
Do not build peduncle primitive geometry in the Context.
Definition PlantArchitecture.cpp:2101
-
PlantArchitecture::deletePlantInstance
void deletePlantInstance(uint plantID)
Delete an existing plant instance.
Definition PlantArchitecture.cpp:2627
-
PlantArchitecture::enableEpicormicChildShoots
void enableEpicormicChildShoots(uint plantID, const std::string &epicormic_shoot_type_label, float epicormic_probability_perlength_perday)
Enable shoot type to produce epicormic child shoots (water sprouts)
Definition PlantArchitecture.cpp:2079
-
PlantArchitecture::defineShootType
void defineShootType(const std::string &shoot_type_label, const ShootParameters &shoot_params)
Define a new shoot type based on a set of ShootParameters.
Definition PlantArchitecture.cpp:236
-
PlantArchitecture::getPlantFruitObjectIDs
std::vector< uint > getPlantFruitObjectIDs(uint plantID) const
Get object IDs for all fruit objects for a given plant.
Definition PlantArchitecture.cpp:2531
-
PlantArchitecture::disablePetioleContextBuild
void disablePetioleContextBuild()
Do not build petiole primitive geometry in the Context.
Definition PlantArchitecture.cpp:2097
+ +
PlantArchitecture::addPlantInstance
uint addPlantInstance(const helios::vec3 &base_position, float current_age)
Create an instance of a plant.
Definition PlantArchitecture.cpp:2568
+
PlantArchitecture::addChildShoot
uint addChildShoot(uint plantID, int parent_shoot_ID, uint parent_node_index, uint current_node_number, const AxisRotation &shoot_base_rotation, float internode_radius, float internode_length_max, float internode_length_scale_factor_fraction, float leaf_scale_factor_fraction, float radius_taper, const std::string &shoot_type_label, uint petiole_index=0)
Manually add a child shoot at the axillary bud of a phytomer.
Definition PlantArchitecture.cpp:1976
+
PlantArchitecture::appendPhytomerToShoot
int appendPhytomerToShoot(uint plantID, uint shootID, const PhytomerParameters &phytomer_parameters, float internode_radius, float internode_length_max, float internode_length_scale_factor_fraction, float leaf_scale_factor_fraction)
Add a new phytomer at the terminal bud of a shoot.
Definition PlantArchitecture.cpp:2058
+
PlantArchitecture::getPlantFlowerObjectIDs
std::vector< uint > getPlantFlowerObjectIDs(uint plantID) const
Get object IDs for all inflorescence objects for a given plant.
Definition PlantArchitecture.cpp:2514
+
PlantArchitecture::appendShoot
uint appendShoot(uint plantID, int parent_shoot_ID, uint current_node_number, const AxisRotation &base_rotation, float internode_radius, float internode_length_max, float internode_length_scale_factor_fraction, float leaf_scale_factor_fraction, float radius_taper, const std::string &shoot_type_label)
Manually append a new shoot at the end of an existing shoot. This is used when the characteristics of...
Definition PlantArchitecture.cpp:1931
+
PlantArchitecture::enableGroundClipping
void enableGroundClipping(float ground_height=0.f)
Enable automatic removal of organs that are below the ground plane.
Definition PlantArchitecture.cpp:2133
+
PlantArchitecture::addBaseStemShoot
uint addBaseStemShoot(uint plantID, uint current_node_number, const AxisRotation &base_rotation, float internode_radius, float internode_length_max, float internode_length_scale_factor_fraction, float leaf_scale_factor_fraction, float radius_taper, const std::string &shoot_type_label)
Define the stem/trunk shoot (base of plant) to start a new plant. This requires a plant instance has ...
Definition PlantArchitecture.cpp:1899
+
PlantArchitecture::getAllPlantUUIDs
std::vector< uint > getAllPlantUUIDs(uint plantID) const
Get primitive UUIDs for all primitives in a given plant.
Definition PlantArchitecture.cpp:2426
+
PlantArchitecture::setPlantPhenologicalThresholds
void setPlantPhenologicalThresholds(uint plantID, float time_to_dormancy_break, float time_to_flower_initiation, float time_to_flower_opening, float time_to_fruit_set, float time_to_fruit_maturity, float time_to_senescence, bool is_evergreen=false)
Specify the threshold values for plant phenological stages.
Definition PlantArchitecture.cpp:2657
+
PlantArchitecture::getPlantInternodeObjectIDs
std::vector< uint > getPlantInternodeObjectIDs(uint plantID) const
Get object IDs for all internode (Tube) objects for a given plant.
Definition PlantArchitecture.cpp:2430
+
PlantArchitecture::buildPlantCanopyFromLibrary
std::vector< uint > buildPlantCanopyFromLibrary(const helios::vec3 &canopy_center_position, const helios::vec2 &plant_spacing_xy, const helios::int2 &plant_count_xy, float age)
Build a canopy of regularly spaced plants based on the model currently loaded from the library.
Definition PlantArchitecture.cpp:216
+
PlantArchitecture::disablePeduncleContextBuild
void disablePeduncleContextBuild()
Do not build peduncle primitive geometry in the Context.
Definition PlantArchitecture.cpp:2129
+
PlantArchitecture::deletePlantInstance
void deletePlantInstance(uint plantID)
Delete an existing plant instance.
Definition PlantArchitecture.cpp:2637
+
PlantArchitecture::enableEpicormicChildShoots
void enableEpicormicChildShoots(uint plantID, const std::string &epicormic_shoot_type_label, float epicormic_probability_perlength_perday)
Enable shoot type to produce epicormic child shoots (water sprouts)
Definition PlantArchitecture.cpp:2107
+
PlantArchitecture::defineShootType
void defineShootType(const std::string &shoot_type_label, const ShootParameters &shoot_params)
Define a new shoot type based on a set of ShootParameters.
Definition PlantArchitecture.cpp:235
+
PlantArchitecture::getPlantFruitObjectIDs
std::vector< uint > getPlantFruitObjectIDs(uint plantID) const
Get object IDs for all fruit objects for a given plant.
Definition PlantArchitecture.cpp:2541
+
PlantArchitecture::disablePetioleContextBuild
void disablePetioleContextBuild()
Do not build petiole primitive geometry in the Context.
Definition PlantArchitecture.cpp:2125
PlantArchitecture::PlantArchitecture
PlantArchitecture(helios::Context *context_ptr)
Main architectural model class constructor.
Definition PlantArchitecture.cpp:87
PlantArchitecture::buildPlantInstanceFromLibrary
uint buildPlantInstanceFromLibrary(const helios::vec3 &base_position, float age)
Build a plant instance based on the model currently loaded from the library.
Definition PlantLibrary.cpp:27
-
PlantArchitecture::optionalOutputObjectData
void optionalOutputObjectData(const std::string &object_data_label)
Add optional output object data values to the Context.
Definition PlantArchitecture.cpp:3088
-
PlantArchitecture::duplicatePlantInstance
uint duplicatePlantInstance(uint plantID, const helios::vec3 &base_position, const AxisRotation &base_rotation, float current_age)
Duplicate an existing plant instance and specify its base position and age.
Definition PlantArchitecture.cpp:2574
-
PlantArchitecture::getAllPlantObjectIDs
std::vector< uint > getAllPlantObjectIDs(uint plantID) const
Get object IDs for all organs objects for a given plant.
Definition PlantArchitecture.cpp:2386
-
PlantArchitecture::addEpicormicShoot
uint addEpicormicShoot(uint plantID, int parent_shoot_ID, float parent_position_fraction, uint current_node_number, float zenith_perturbation_degrees, float internode_radius, float internode_length_max, float internode_length_scale_factor_fraction, float leaf_scale_factor_fraction, float radius_taper, const std::string &shoot_type_label)
Manually add a child epicormic shoot (water sprout) at an arbitrary position along the shoot.
Definition PlantArchitecture.cpp:1987
-
PlantArchitecture::setPlantPhenologicalThresholds
void setPlantPhenologicalThresholds(uint plantID, float time_to_leaf_out, float time_to_flower_initiation, float time_to_flower_opening, float time_to_fruit_set, float time_to_fruit_maturity, float time_to_senescence)
Specify the threshold values for plant phenological stages.
Definition PlantArchitecture.cpp:2647
-
PlantArchitecture::getPlantPetioleObjectIDs
std::vector< uint > getPlantPetioleObjectIDs(uint plantID) const
Get object IDs for all petiole (Tube) objects for a given plant.
Definition PlantArchitecture.cpp:2438
-
PlantArchitecture::disableInternodeContextBuild
void disableInternodeContextBuild()
Do not build internode primitive geometry in the Context.
Definition PlantArchitecture.cpp:2093
-
PlantArchitecture::getPlantPeduncleObjectIDs
std::vector< uint > getPlantPeduncleObjectIDs(uint plantID) const
Get object IDs for all peduncle (Tube) objects for a given plant.
Definition PlantArchitecture.cpp:2480
-
PlantArchitecture::advanceTime
void advanceTime(float dt)
Advance plant growth by a specified time interval for all plants.
Definition PlantArchitecture.cpp:2671
-
PlantArchitecture::getPlantLeafObjectIDs
std::vector< uint > getPlantLeafObjectIDs(uint plantID) const
Get object IDs for all leaf objects for a given plant.
Definition PlantArchitecture.cpp:2459
-
helios::Cone::scaleLength
void scaleLength(float S)
Method to scale the length of the cone.
Definition Context.cpp:4122
-
helios::Cone::scaleGirth
void scaleGirth(float S)
Method to scale the girth of the cone.
Definition Context.cpp:4171
+
PlantArchitecture::optionalOutputObjectData
void optionalOutputObjectData(const std::string &object_data_label)
Add optional output object data values to the Context.
Definition PlantArchitecture.cpp:3108
+
PlantArchitecture::duplicatePlantInstance
uint duplicatePlantInstance(uint plantID, const helios::vec3 &base_position, const AxisRotation &base_rotation, float current_age)
Duplicate an existing plant instance and specify its base position and age.
Definition PlantArchitecture.cpp:2584
+
PlantArchitecture::getAllPlantObjectIDs
std::vector< uint > getAllPlantObjectIDs(uint plantID) const
Get object IDs for all organs objects for a given plant.
Definition PlantArchitecture.cpp:2396
+
PlantArchitecture::addEpicormicShoot
uint addEpicormicShoot(uint plantID, int parent_shoot_ID, float parent_position_fraction, uint current_node_number, float zenith_perturbation_degrees, float internode_radius, float internode_length_max, float internode_length_scale_factor_fraction, float leaf_scale_factor_fraction, float radius_taper, const std::string &shoot_type_label)
Manually add a child epicormic shoot (water sprout) at an arbitrary position along the shoot.
Definition PlantArchitecture.cpp:2020
+
PlantArchitecture::sumPlantLeafArea
float sumPlantLeafArea(uint plantID) const
Sum the one-sided leaf area of all leaves in the plant.
Definition PlantArchitecture.cpp:2263
+
PlantArchitecture::getPlantPetioleObjectIDs
std::vector< uint > getPlantPetioleObjectIDs(uint plantID) const
Get object IDs for all petiole (Tube) objects for a given plant.
Definition PlantArchitecture.cpp:2448
+
PlantArchitecture::disableInternodeContextBuild
void disableInternodeContextBuild()
Do not build internode primitive geometry in the Context.
Definition PlantArchitecture.cpp:2121
+
PlantArchitecture::getPlantPeduncleObjectIDs
std::vector< uint > getPlantPeduncleObjectIDs(uint plantID) const
Get object IDs for all peduncle (Tube) objects for a given plant.
Definition PlantArchitecture.cpp:2490
+
PlantArchitecture::advanceTime
void advanceTime(float dt)
Advance plant growth by a specified time interval for all plants.
Definition PlantArchitecture.cpp:2682
+
PlantArchitecture::getPlantLeafObjectIDs
std::vector< uint > getPlantLeafObjectIDs(uint plantID) const
Get object IDs for all leaf objects for a given plant.
Definition PlantArchitecture.cpp:2469
+
helios::Cone::scaleLength
void scaleLength(float S)
Method to scale the length of the cone.
Definition Context.cpp:4174
+
helios::Cone::scaleGirth
void scaleGirth(float S)
Method to scale the girth of the cone.
Definition Context.cpp:4223
helios::Context
Stores the state associated with simulation.
Definition Context.h:1882
-
helios::Context::setPrimitiveColor
void setPrimitiveColor(uint UUID, const helios::RGBcolor &color)
Method to set the diffuse color of a Primitive.
Definition Context.cpp:7016
-
helios::Context::scaleObjectAboutPoint
void scaleObjectAboutPoint(uint ObjID, const helios::vec3 &scalefact, const helios::vec3 &point)
Method to scale a compound object in the x-, y- and z-directions.
Definition Context.cpp:2882
-
helios::Context::copyObject
uint copyObject(uint ObjID)
Make a copy of a Compound Objects from the context.
Definition Context.cpp:2627
-
helios::Context::randn
float randn()
Draw a random number from a normal distribution with mean = 0, stddev = 1.
Definition Context.cpp:1199
-
helios::Context::getConeObjectPointer
Cone * getConeObjectPointer(uint ObjID) const
Get a pointer to a Cone Compound Object.
Definition Context.cpp:4033
-
helios::Context::rotateObject
void rotateObject(uint ObjID, float rotation_radians, const char *rotation_axis_xyz)
Rotate a single compound object about the x, y, or z axis.
Definition Context.cpp:2832
+
helios::Context::setPrimitiveColor
void setPrimitiveColor(uint UUID, const helios::RGBcolor &color)
Method to set the diffuse color of a Primitive.
Definition Context.cpp:7083
+
helios::Context::scaleObjectAboutPoint
void scaleObjectAboutPoint(uint ObjID, const helios::vec3 &scalefact, const helios::vec3 &point)
Method to scale a compound object in the x-, y- and z-directions.
Definition Context.cpp:2877
+
helios::Context::copyObject
uint copyObject(uint ObjID)
Make a copy of a Compound Objects from the context.
Definition Context.cpp:2622
+
helios::Context::randn
float randn()
Draw a random number from a normal distribution with mean = 0, stddev = 1.
Definition Context.cpp:1194
+
helios::Context::getConeObjectPointer
Cone * getConeObjectPointer(uint ObjID) const
Get a pointer to a Cone Compound Object.
Definition Context.cpp:4085
+
helios::Context::rotateObject
void rotateObject(uint ObjID, float rotation_radians, const char *rotation_axis_xyz)
Rotate a single compound object about the x, y, or z axis.
Definition Context.cpp:2827
helios::Context::filterPrimitivesByData
std::vector< uint > filterPrimitivesByData(const std::vector< uint > &UUIDs, const std::string &primitive_data_label, float filter_value, const std::string &comparator)
Filter a set of primitives based on their primitive data and a condition and float value.
Definition Context_data.cpp:2224
-
helios::Context::randu
float randu()
Draw a random number from a uniform distribution between 0 and 1.
Definition Context.cpp:1173
-
helios::Context::getConeObjectNode
helios::vec3 getConeObjectNode(uint ObjID, int number) const
get a node of a Cone object from the context
Definition Context.cpp:8139
-
helios::Context::getTubeObjectVolume
float getTubeObjectVolume(uint ObjID) const
get the volume of a Tube object from the context
Definition Context.cpp:8049
-
helios::Context::appendTubeSegment
void appendTubeSegment(uint ObjID, const helios::vec3 &node_position, float radius, const RGBcolor &color)
Append a tube segment to an existing tube object.
Definition Context.cpp:8057
+
helios::Context::randu
float randu()
Draw a random number from a uniform distribution between 0 and 1.
Definition Context.cpp:1168
+
helios::Context::getConeObjectNode
helios::vec3 getConeObjectNode(uint ObjID, int number) const
get a node of a Cone object from the context
Definition Context.cpp:8206
+
helios::Context::getTubeObjectVolume
float getTubeObjectVolume(uint ObjID) const
get the volume of a Tube object from the context
Definition Context.cpp:8116
+
helios::Context::appendTubeSegment
void appendTubeSegment(uint ObjID, const helios::vec3 &node_position, float radius, const RGBcolor &color)
Append a tube segment to an existing tube object.
Definition Context.cpp:8124
helios::Context::setObjectData
void setObjectData(uint objID, const char *label, const int &data)
Add data value (int) associated with a compound object.
Definition Context_data.cpp:2392
helios::Context::clearObjectData
void clearObjectData(uint objID, const char *label)
Clear primitive data for a single primitive based on its objID.
Definition Context_data.cpp:2992
-
helios::Context::translateObject
void translateObject(uint ObjID, const vec3 &shift)
Translate a single compound object.
Definition Context.cpp:2822
-
helios::Context::getObjectPrimitiveUUIDs
std::vector< uint > getObjectPrimitiveUUIDs(uint ObjID) const
Get primitive UUIDs associated with compound object (single object ID input)
Definition Context.cpp:2892
+
helios::Context::translateObject
void translateObject(uint ObjID, const vec3 &shift)
Translate a single compound object.
Definition Context.cpp:2817
+
helios::Context::getObjectPrimitiveUUIDs
std::vector< uint > getObjectPrimitiveUUIDs(uint ObjID) const
Get primitive UUIDs associated with compound object (single object ID input)
Definition Context.cpp:2887
helios::Context::getRandomGenerator
std::minstd_rand0 * getRandomGenerator()
Get the random number generator engine.
Definition Context.cpp:47
-
helios::Context::hideObject
void hideObject(const std::vector< uint > &ObjIDs)
Hide compound objects in the Context such that their object IDs are not returned in Context::getAllOb...
Definition Context.cpp:7778
-
helios::Context::doesObjectExist
bool doesObjectExist(uint ObjID) const
Check whether Compound Object exists in the Context.
Definition Context.cpp:2570
-
helios::Context::deleteObject
void deleteObject(uint ObjID)
Delete a single Compound Object from the context.
Definition Context.cpp:2594
-
helios::Context::getPrimitiveVertices
std::vector< helios::vec3 > getPrimitiveVertices(uint UUID) const
Method to return the (x,y,z) coordinates of the vertices of a Primitive.
Definition Context.cpp:6999
-
helios::Context::setTubeNodes
void setTubeNodes(uint ObjID, const std::vector< helios::vec3 > &node_xyz)
Set tube vertex coordinates at each segment node.
Definition Context.cpp:8092
-
helios::Context::setTubeRadii
void setTubeRadii(uint ObjID, const std::vector< float > &node_radii)
Set tube radii at each segment node.
Definition Context.cpp:8078
-
helios::Context::scaleObject
void scaleObject(uint ObjID, const helios::vec3 &scalefact)
Method to scale a compound object in the x-, y- and z-directions.
Definition Context.cpp:2862
+
helios::Context::hideObject
void hideObject(const std::vector< uint > &ObjIDs)
Hide compound objects in the Context such that their object IDs are not returned in Context::getAllOb...
Definition Context.cpp:7845
+
helios::Context::doesObjectExist
bool doesObjectExist(uint ObjID) const
Check whether Compound Object exists in the Context.
Definition Context.cpp:2565
+
helios::Context::deleteObject
void deleteObject(uint ObjID)
Delete a single Compound Object from the context.
Definition Context.cpp:2589
+
helios::Context::getObjectArea
float getObjectArea(uint ObjID) const
Method to return the one-sided surface area of an object.
Definition Context.cpp:7864
+
helios::Context::getPrimitiveVertices
std::vector< helios::vec3 > getPrimitiveVertices(uint UUID) const
Method to return the (x,y,z) coordinates of the vertices of a Primitive.
Definition Context.cpp:7066
+
helios::Context::setTubeNodes
void setTubeNodes(uint ObjID, const std::vector< helios::vec3 > &node_xyz)
Set tube vertex coordinates at each segment node.
Definition Context.cpp:8159
+
helios::Context::setTubeRadii
void setTubeRadii(uint ObjID, const std::vector< float > &node_radii)
Set tube radii at each segment node.
Definition Context.cpp:8145
+
helios::Context::scaleObject
void scaleObject(uint ObjID, const helios::vec3 &scalefact)
Method to scale a compound object in the x-, y- and z-directions.
Definition Context.cpp:2857
helios::rotatePointAboutLine
vec3 rotatePointAboutLine(const vec3 &point, const vec3 &line_base, const vec3 &line_direction, float theta)
Rotate a 3D vector about an arbitrary line.
Definition global.cpp:140
helios::helios_runtime_error
void helios_runtime_error(const std::string &error_message)
Function to throw a runtime error.
Definition global.cpp:29
helios::nullorigin
vec3 nullorigin
Default null vec3 that gives the origin (0,0,0)
Definition global.cpp:58
-
helios::Context::addTubeObject
uint addTubeObject(uint radial_subdivisions, const std::vector< vec3 > &nodes, const std::vector< float > &radius)
Add a 3D tube compound object to the Context.
Definition Context.cpp:4638
-
helios::Context::addConeObject
uint addConeObject(uint Ndivs, const vec3 &node0, const vec3 &node1, float radius0, float radius1)
Add a 3D cone compound object to the Context.
Definition Context.cpp:5303
-
helios::flatten
std::vector< int > flatten(const std::vector< std::vector< int > > &vec)
Function to flatten a 2D int vector into a 1D vector.
Definition global.cpp:1859
+
helios::Context::addTubeObject
uint addTubeObject(uint radial_subdivisions, const std::vector< vec3 > &nodes, const std::vector< float > &radius)
Add a 3D tube compound object to the Context.
Definition Context.cpp:4690
+
helios::Context::addConeObject
uint addConeObject(uint Ndivs, const vec3 &node0, const vec3 &node1, float radius0, float radius1)
Add a 3D cone compound object to the Context.
Definition Context.cpp:5370
+
helios::flatten
std::vector< int > flatten(const std::vector< std::vector< int > > &vec)
Function to flatten a 2D int vector into a 1D vector.
Definition global.cpp:1861
helios::cart2sphere
SphericalCoord cart2sphere(const vec3 &Cartesian)
Convert Cartesian coordinates to spherical coordinates.
Definition global.cpp:610
helios::deg2rad
float deg2rad(float deg)
Convert degrees to radians.
Definition global.cpp:576
helios::acos_safe
float acos_safe(float x)
arccosine function to handle cases when round-off errors cause an argument <-1 or >1,...
Definition global.cpp:241
helios::sum
float sum(const std::vector< float > &vect)
Sum of a vector of floats.
Definition global.cpp:987
helios::asin_safe
float asin_safe(float x)
arcsine function to handle cases when round-off errors cause an argument <-1 or >1,...
Definition global.cpp:247
helios::make_int3
int3 make_int3(int X, int Y, int Z)
Make an int3 vector from three ints.
Definition helios_vector_types.h:198
-
helios::make_vec3
vec3 make_vec3(float x, float y, float z)
Make a vec3 from three floats.
Definition helios_vector_types.h:587
-
helios::cross
vec3 cross(const vec3 &a, const vec3 &b)
Cross product of two vec3 vectors.
Definition helios_vector_types.h:597
- - -
Phytomer::setInternodeMaxLength
void setInternodeMaxLength(float internode_length_max_new)
Set the fully-elongated (maximum) internode length.
Definition PlantArchitecture.cpp:1575
-
Phytomer::petiole_vertices
std::vector< std::vector< helios::vec3 > > petiole_vertices
Coordinates of internode tube segments. Index is tube segment within internode.
Definition PlantArchitecture.h:730
-
Phytomer::setInternodeMaxRadius
void setInternodeMaxRadius(float internode_radius_max_new)
Set the maximum radius of the internode.
Definition PlantArchitecture.cpp:1580
-
Phytomer::shoot_index
helios::int3 shoot_index
.x = index of phytomer along shoot, .y = current number of phytomers on parent shoot,...
Definition PlantArchitecture.h:751
-
Phytomer::setLeafScaleFraction
void setLeafScaleFraction(float leaf_scale_factor_fraction)
Set the leaf scale as a fraction of its total fully-elongated scale factor. Value is uniformly applie...
Definition PlantArchitecture.cpp:1586
-
Phytomer::setLeafPrototypeScale
void setLeafPrototypeScale(float leaf_prototype_scale)
Set the fully-elongated (maximum) leaf prototype scale. Value is uniformly applied for all leaves/lea...
Definition PlantArchitecture.cpp:1656
-
Phytomer::scaleInternodeMaxLength
void scaleInternodeMaxLength(float scale_factor)
Scale the fully-elongated (maximum) internode length as a fraction of its current fully-elongated len...
Definition PlantArchitecture.cpp:1564
- +
helios::make_vec3
vec3 make_vec3(float x, float y, float z)
Make a vec3 from three floats.
Definition helios_vector_types.h:589
+
helios::cross
vec3 cross(const vec3 &a, const vec3 &b)
Cross product of two vec3 vectors.
Definition helios_vector_types.h:599
+ + +
Phytomer::setInternodeMaxLength
void setInternodeMaxLength(float internode_length_max_new)
Set the fully-elongated (maximum) internode length.
Definition PlantArchitecture.cpp:1597
+
Phytomer::petiole_vertices
std::vector< std::vector< helios::vec3 > > petiole_vertices
Coordinates of internode tube segments. Index is tube segment within internode.
Definition PlantArchitecture.h:746
+
Phytomer::setInternodeMaxRadius
void setInternodeMaxRadius(float internode_radius_max_new)
Set the maximum radius of the internode.
Definition PlantArchitecture.cpp:1602
+
Phytomer::shoot_index
helios::int3 shoot_index
.x = index of phytomer along shoot, .y = current number of phytomers on parent shoot,...
Definition PlantArchitecture.h:767
+
Phytomer::setLeafScaleFraction
void setLeafScaleFraction(float leaf_scale_factor_fraction)
Set the leaf scale as a fraction of its total fully-elongated scale factor. Value is uniformly applie...
Definition PlantArchitecture.cpp:1608
+
Phytomer::setLeafPrototypeScale
void setLeafPrototypeScale(float leaf_prototype_scale)
Set the fully-elongated (maximum) leaf prototype scale. Value is uniformly applied for all leaves/lea...
Definition PlantArchitecture.cpp:1678
+
Phytomer::scaleInternodeMaxLength
void scaleInternodeMaxLength(float scale_factor)
Scale the fully-elongated (maximum) internode length as a fraction of its current fully-elongated len...
Definition PlantArchitecture.cpp:1586
+
PhytomerParameters::PhytomerParameters
PhytomerParameters()
Default constructor - does not set random number generator.
Definition PlantArchitecture.cpp:101
-
PhytomerParameters::phytomer_creation_function
void(* phytomer_creation_function)(std::shared_ptr< Phytomer > phytomer_ptr, uint shoot_node_index, uint parent_shoot_node_index, uint shoot_max_nodes, float plant_age)
Definition PlantArchitecture.h:483
- - -
Shoot::updateShootNodes
void updateShootNodes(bool update_context_geometry=true)
Recalculate and apply the shoot's origin position and shift all downstream shoots.
Definition PlantArchitecture.cpp:661
-
Shoot::sampleChildShootType
bool sampleChildShootType(std::string &child_shoot_type_label) const
Randomly sample the type of a child shoot based on the probabilities defined in the shoot parameters.
Definition PlantArchitecture.cpp:1778
-
Shoot::appendPhytomer
int appendPhytomer(float internode_radius, float internode_length_max, float internode_length_scale_factor_fraction, float leaf_scale_factor_fraction)
Append a phytomer at the shoot apex.
Definition PlantArchitecture.cpp:408
-
Shoot::sampleEpicormicShoot
uint sampleEpicormicShoot(float dt, std::vector< float > &epicormic_positions_fraction)
Randomly sample whether the shoot should produce an epicormic shoot (water sprout) over timestep.
Definition PlantArchitecture.cpp:1821
- -
ShootParameters::ShootParameters
ShootParameters()
Default constructor - does not set random number generator.
Definition PlantArchitecture.cpp:157
- +
PhytomerParameters::phytomer_creation_function
void(* phytomer_creation_function)(std::shared_ptr< Phytomer > phytomer_ptr, uint shoot_node_index, uint parent_shoot_node_index, uint shoot_max_nodes, float plant_age)
Definition PlantArchitecture.h:496
+ + +
Shoot::updateShootNodes
void updateShootNodes(bool update_context_geometry=true)
Recalculate and apply the shoot's origin position and shift all downstream shoots.
Definition PlantArchitecture.cpp:679
+
Shoot::sampleChildShootType
bool sampleChildShootType(std::string &child_shoot_type_label) const
Randomly sample the type of a child shoot based on the probabilities defined in the shoot parameters.
Definition PlantArchitecture.cpp:1812
+
Shoot::appendPhytomer
int appendPhytomer(float internode_radius, float internode_length_max, float internode_length_scale_factor_fraction, float leaf_scale_factor_fraction)
Append a phytomer at the shoot apex.
Definition PlantArchitecture.cpp:407
+
Shoot::sampleEpicormicShoot
uint sampleEpicormicShoot(float dt, std::vector< float > &epicormic_positions_fraction)
Randomly sample whether the shoot should produce an epicormic shoot (water sprout) over timestep.
Definition PlantArchitecture.cpp:1854
+ +
ShootParameters::ShootParameters
ShootParameters()
Default constructor - does not set random number generator.
Definition PlantArchitecture.cpp:156
+
helios::int2
Vector of two elements of type 'int'.
Definition helios_vector_types.h:44
helios::int2::y
int y
Second element in vector.
Definition helios_vector_types.h:50
helios::int2::x
int x
First element in vector.
Definition helios_vector_types.h:48
@@ -3381,12 +3405,12 @@
helios::vec2
Vector of two elements of type 'float'.
Definition helios_vector_types.h:346
helios::vec2::x
float x
First element in vector.
Definition helios_vector_types.h:350
helios::vec2::y
float y
Second element in vector.
Definition helios_vector_types.h:352
-
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:502
-
helios::vec3::x
float x
First element in vector.
Definition helios_vector_types.h:506
-
helios::vec3::z
float z
Third element in vector.
Definition helios_vector_types.h:510
-
helios::vec3::normalize
void normalize()
Normalize vector components such that the magnitude is unity.
Definition helios_vector_types.h:513
-
helios::vec3::y
float y
Second element in vector.
Definition helios_vector_types.h:508
-
helios::vec3::magnitude
float magnitude() const
Compute the vector magnitude.
Definition helios_vector_types.h:524
+
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:503
+
helios::vec3::normalize
vec3 normalize()
Normalize vector components such that the magnitude is unity.
Definition helios_vector_types.h:514
+
helios::vec3::x
float x
First element in vector.
Definition helios_vector_types.h:507
+
helios::vec3::z
float z
Third element in vector.
Definition helios_vector_types.h:511
+
helios::vec3::y
float y
Second element in vector.
Definition helios_vector_types.h:509
+
helios::vec3::magnitude
float magnitude() const
Compute the vector magnitude.
Definition helios_vector_types.h:526
diff --git a/doc/html/_plant_architecture_8h.html b/doc/html/_plant_architecture_8h.html index 2f67e2194..0eb7db4bc 100644 --- a/doc/html/_plant_architecture_8h.html +++ b/doc/html/_plant_architecture_8h.html @@ -38,7 +38,7 @@
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Definition at line 249 of file PlantArchitecture.h.

diff --git a/doc/html/_plant_architecture_8h_source.html b/doc/html/_plant_architecture_8h_source.html index d219ec6cc..c706b86a0 100644 --- a/doc/html/_plant_architecture_8h_source.html +++ b/doc/html/_plant_architecture_8h_source.html @@ -38,7 +38,7 @@

@@ -172,1179 +172,1216 @@
82 }
83
84 void uniformDistribution( float minval, float maxval ){
-
85 distribution = "uniform";
-
86 distribution_parameters = {minval, maxval};
-
87 sampled = false;
-
88 }
-
89
-
90 void normalDistribution( float mean, float std_dev ){
-
91 distribution = "normal";
-
92 distribution_parameters = {mean, std_dev};
-
93 sampled = false;
-
94 }
-
95
-
96 void weibullDistribution( float shape, float scale ){
-
97 distribution = "weibull";
-
98 distribution_parameters = {shape, scale};
-
99 sampled = false;
-
100 }
-
101
-
102 float val(){
-
103 if( !sampled ){
-
104 constval = resample();
-
105 }
-
106 return constval;
-
107 }
-
108
-
109 float resample(){
-
110 sampled = true;
-
111 if( distribution!="constant" ) {
-
112 if (generator == nullptr) {
-
113 throw (std::runtime_error("ERROR (PlantArchitecture): Random parameter was not properly initialized with random number generator."));
-
114 }
-
115 if (distribution == "uniform") {
-
116 std::uniform_real_distribution<float> unif_distribution;
-
117 constval = distribution_parameters.at(0) + unif_distribution(*generator) * (distribution_parameters.at(1) - distribution_parameters.at(0));
-
118 } else if (distribution == "normal") {
-
119 std::normal_distribution<float> norm_distribution(distribution_parameters.at(0),distribution_parameters.at(1));
-
120 constval = norm_distribution(*generator);
-
121 } else if (distribution == "weibull") {
-
122 std::weibull_distribution<float> wbull_distribution(distribution_parameters.at(0),distribution_parameters.at(1));
-
123 constval = wbull_distribution(*generator);
-
124 }
-
125 }
-
126 return constval;
-
127 }
-
128
-
129 std::string distribution;
-
130 std::vector<float> distribution_parameters;
+
85 if( minval>maxval ){
+
86 throw (std::runtime_error("ERROR (PlantArchitecture): RandomParameter_float::uniformDistribution() - minval must be less than or equal to maxval."));
+
87 }
+
88 distribution = "uniform";
+
89 distribution_parameters = {minval, maxval};
+
90 sampled = false;
+
91 }
+
92
+
93 void normalDistribution( float mean, float std_dev ){
+
94 distribution = "normal";
+
95 distribution_parameters = {mean, std_dev};
+
96 sampled = false;
+
97 }
+
98
+
99 void weibullDistribution( float shape, float scale ){
+
100 distribution = "weibull";
+
101 distribution_parameters = {shape, scale};
+
102 sampled = false;
+
103 }
+
104
+
105 float val(){
+
106 if( !sampled ){
+
107 constval = resample();
+
108 }
+
109 return constval;
+
110 }
+
111
+
112 float resample(){
+
113 sampled = true;
+
114 if( distribution!="constant" ) {
+
115 if (generator == nullptr) {
+
116 throw (std::runtime_error("ERROR (PlantArchitecture): Random parameter was not properly initialized with random number generator."));
+
117 }
+
118 if (distribution == "uniform") {
+
119 std::uniform_real_distribution<float> unif_distribution;
+
120 constval = distribution_parameters.at(0) + unif_distribution(*generator) * (distribution_parameters.at(1) - distribution_parameters.at(0));
+
121 } else if (distribution == "normal") {
+
122 std::normal_distribution<float> norm_distribution(distribution_parameters.at(0),distribution_parameters.at(1));
+
123 constval = norm_distribution(*generator);
+
124 } else if (distribution == "weibull") {
+
125 std::weibull_distribution<float> wbull_distribution(distribution_parameters.at(0),distribution_parameters.at(1));
+
126 constval = wbull_distribution(*generator);
+
127 }
+
128 }
+
129 return constval;
+
130 }
131
-
132private:
-
133 bool sampled;
-
134 float constval;
-
135
-
136
-
137 std::minstd_rand0 *generator;
-
138};
- +
132 std::string distribution;
+
133 std::vector<float> distribution_parameters;
+
134
+
135private:
+
136 bool sampled;
+
137 float constval;
+
138
139
-
-
140struct RandomParameter_int {
-
141public:
+
140 std::minstd_rand0 *generator;
+
141};
+
142
-
143 explicit RandomParameter_int(){
-
144 constval = 1;
-
145 distribution = "constant";
-
146 generator = nullptr;
-
147 sampled = false;
-
148 }
-
149
-
150 void initialize(int a_val, std::minstd_rand0 *rand_generator){
-
151 constval = a_val;
-
152 distribution = "constant";
-
153 generator = rand_generator;
-
154 sampled = false;
-
155 }
-
156
-
157 void initialize( std::minstd_rand0 *rand_generator){
-
158 constval = 1;
-
159 distribution = "constant";
-
160 generator = rand_generator;
-
161 sampled = false;
-
162 }
-
163
-
164 RandomParameter_int& operator=(int a){
-
165 this->distribution = "constant";
-
166 this->constval = a;
-
167 this->sampled = false;
-
168 return *this;
-
169 }
-
170
-
171 void uniformDistribution( int minval, int maxval ){
-
172 distribution = "uniform";
-
173 distribution_parameters = {minval, maxval};
-
174 sampled = false;
-
175 }
-
176
-
177 int val(){
-
178 if( !sampled ){
-
179 constval = resample();
-
180 }
-
181 return constval;
-
182 }
-
183
-
184 int resample(){
-
185 sampled = true;
-
186 if( distribution!="constant" ) {
-
187 if (generator == nullptr) {
-
188 throw (std::runtime_error("ERROR (PlantArchitecture): Random parameter was not properly initialized with random number generator."));
-
189 }
-
190 if (distribution == "uniform") {
-
191 std::uniform_int_distribution<> unif_distribution(distribution_parameters.at(0),distribution_parameters.at(1));
-
192 constval = unif_distribution(*generator);
-
193 }
-
194 }
-
195 return constval;
-
196 }
-
197
-
198private:
-
199 bool sampled;
-
200 int constval;
-
201 std::string distribution;
-
202 std::vector<int> distribution_parameters;
-
203 std::minstd_rand0 *generator;
-
204};
+
+
143struct RandomParameter_int {
+
144public:
+
145
+
146 explicit RandomParameter_int(){
+
147 constval = 1;
+
148 distribution = "constant";
+
149 generator = nullptr;
+
150 sampled = false;
+
151 }
+
152
+
153 void initialize(int a_val, std::minstd_rand0 *rand_generator){
+
154 constval = a_val;
+
155 distribution = "constant";
+
156 generator = rand_generator;
+
157 sampled = false;
+
158 }
+
159
+
160 void initialize( std::minstd_rand0 *rand_generator){
+
161 constval = 1;
+
162 distribution = "constant";
+
163 generator = rand_generator;
+
164 sampled = false;
+
165 }
+
166
+
167 RandomParameter_int& operator=(int a){
+
168 this->distribution = "constant";
+
169 this->constval = a;
+
170 this->sampled = false;
+
171 return *this;
+
172 }
+
173
+
174 void uniformDistribution( int minval, int maxval ){
+
175 if( minval>maxval ){
+
176 throw (std::runtime_error("ERROR (PlantArchitecture): RandomParameter_int::uniformDistribution() - minval must be less than or equal to maxval."));
+
177 }
+
178 distribution = "uniform";
+
179 distribution_parameters = {minval, maxval};
+
180 sampled = false;
+
181 }
+
182
+
183 void discreteValues( const std::vector<int> &values ){
+
184 distribution = "discretevalues";
+
185 distribution_parameters = values;
+
186 sampled = false;
+
187 }
+
188
+
189 int val(){
+
190 if( !sampled ){
+
191 constval = resample();
+
192 }
+
193 return constval;
+
194 }
+
195
+
196 int resample(){
+
197 sampled = true;
+
198 if( distribution!="constant" ) {
+
199 if (generator == nullptr) {
+
200 throw (std::runtime_error("ERROR (PlantArchitecture): Random parameter was not properly initialized with random number generator."));
+
201 }
+
202 if (distribution == "uniform") {
+
203 std::uniform_int_distribution<> unif_distribution(distribution_parameters.at(0),distribution_parameters.at(1));
+
204 constval = unif_distribution(*generator);
+
205 }else if (distribution == "discretevalues") {
+
206 std::uniform_int_distribution<> unif_distribution(0,distribution_parameters.size()-1);
+
207 constval = distribution_parameters.at(unif_distribution(*generator));
+
208 }
+
209 }
+
210 return constval;
+
211 }
+
212
+
213private:
+
214 bool sampled;
+
215 int constval;
+
216 std::string distribution;
+
217 std::vector<int> distribution_parameters;
+
218 std::minstd_rand0 *generator;
+
219};
-
205
-
-
206struct AxisRotation{
-
207public:
-
208
-
209 AxisRotation(){
-
210 pitch = 0;
-
211 yaw = 0;
-
212 roll = 0;
-
213 }
-
214
-
215 AxisRotation( float a_pitch, float a_yaw, float a_roll ){
-
216 pitch = a_pitch;
-
217 yaw = a_yaw;
-
218 roll = a_roll;
-
219 }
220
-
221 float pitch;
-
222 float yaw;
-
223 float roll;
-
224
-
225 AxisRotation operator+(const AxisRotation& a) const;
-
226 AxisRotation operator-(const AxisRotation& a) const;
-
227
-
228 friend std::ostream &operator<<(std::ostream &os, const AxisRotation &rot) {
-
229 return os << "AxisRotation<" << rot.pitch << ", " << rot.yaw << ", " << rot.roll << ">";
-
230 }
-
231
-
232};
+
+
221struct AxisRotation{
+
222public:
+
223
+
224 AxisRotation(){
+
225 pitch = 0;
+
226 yaw = 0;
+
227 roll = 0;
+
228 }
+
229
+
230 AxisRotation( float a_pitch, float a_yaw, float a_roll ){
+
231 pitch = a_pitch;
+
232 yaw = a_yaw;
+
233 roll = a_roll;
+
234 }
+
235
+
236 float pitch;
+
237 float yaw;
+
238 float roll;
+
239
+
240 AxisRotation operator+(const AxisRotation& a) const;
+
241 AxisRotation operator-(const AxisRotation& a) const;
+
242
+
243 friend std::ostream &operator<<(std::ostream &os, const AxisRotation &rot) {
+
244 return os << "AxisRotation<" << rot.pitch << ", " << rot.yaw << ", " << rot.roll << ">";
+
245 }
+
246
+
247};
-
233
-
234inline AxisRotation make_AxisRotation( float a_pitch, float a_yaw, float a_roll ) {
-
235 return {a_pitch,a_yaw,a_roll};
-
236}
-
237
-
238inline AxisRotation AxisRotation::operator+(const AxisRotation& a) const{
-
239 return {a.pitch+pitch, a.yaw+yaw, a.roll+roll};
-
240}
-
241
-
242inline AxisRotation AxisRotation::operator-(const AxisRotation& a) const{
-
243 return {a.pitch-pitch, a.yaw-yaw, a.roll-roll};
-
244}
-
245
-
246enum BudState{
-
247 BUD_DORMANT = 0,
-
248 BUD_ACTIVE = 1,
-
249 BUD_FLOWER_CLOSED = 2,
-
250 BUD_FLOWER_OPEN = 3,
-
251 BUD_FRUITING = 4,
-
252 BUD_DEAD = 5
-
253};
-
254
+
248
+
249inline AxisRotation make_AxisRotation( float a_pitch, float a_yaw, float a_roll ) {
+
250 return {a_pitch,a_yaw,a_roll};
+
251}
+
252
+
253inline AxisRotation AxisRotation::operator+(const AxisRotation& a) const{
+
254 return {a.pitch+pitch, a.yaw+yaw, a.roll+roll};
+
255}
256
-
264std::vector<uint> makeTubeFromCones(uint radial_subdivisions, const std::vector<helios::vec3> &vertices, const std::vector<float> &radii, const std::vector<helios::RGBcolor> &colors, helios::Context *context_ptr);
-
265
-
-
266struct VegetativeBud{
-
267
-
268 //state of the bud
-
269 BudState state = BUD_DORMANT;
-
270 //label of the shoot type that will be produced if the bud breaks into a shoot
-
271 std::string shoot_type_label;
-
272 //ID of the shoot that the bud will produce if it breaks into a shoot
-
273 uint shoot_ID = -1;
-
274
-
275};
+
257inline AxisRotation AxisRotation::operator-(const AxisRotation& a) const{
+
258 return {a.pitch-pitch, a.yaw-yaw, a.roll-roll};
+
259}
+
260
+
261enum BudState{
+
262 BUD_DORMANT = 0,
+
263 BUD_ACTIVE = 1,
+
264 BUD_FLOWER_CLOSED = 2,
+
265 BUD_FLOWER_OPEN = 3,
+
266 BUD_FRUITING = 4,
+
267 BUD_DEAD = 5
+
268};
+
269
+
271
+
279std::vector<uint> makeTubeFromCones(uint radial_subdivisions, const std::vector<helios::vec3> &vertices, const std::vector<float> &radii, const std::vector<helios::RGBcolor> &colors, helios::Context *context_ptr);
+
280
+
+
281struct VegetativeBud{
+
282
+
283 //state of the bud
+
284 BudState state = BUD_DORMANT;
+
285 //label of the shoot type that will be produced if the bud breaks into a shoot
+
286 std::string shoot_type_label;
+
287 //ID of the shoot that the bud will produce if it breaks into a shoot
+
288 uint shoot_ID = -1;
+
289
+
290};
-
276
-
-
277struct FloralBud{
-
278
-
279 //state of the bud
-
280 BudState state = BUD_DORMANT;
-
281 //amount of time since the bud flowered (=0 if it has not yet flowered)
-
282 float time_counter = 0;
-
283 //=0 for axillary buds, =1 for terminal buds
-
284 bool isterminal = false;
-
285 //For axillary buds: index of the petiole within the internode that this floral bud originates from
-
286 //For terminal buds: index of the phytomer within the shoot that this floral bud originates from
-
287 uint parent_index = 0;
-
288 //Index of the bud within the petiole that this floral bud originates from
-
289 uint bud_index = 0;
-
290 //Scaling factor fraction of the fruit (if present), ranging from 0 to 1
-
291 float current_fruit_scale_factor = 1;
-
292 float previous_fruit_scale_factor = 0;
+
291
+
+
292struct FloralBud{
293
-
294
-
295
-
296 helios::vec3 base_position;
-
297 AxisRotation base_rotation;
-
298 helios::vec3 bending_axis;
-
299
-
300 std::vector<helios::vec3> inflorescence_bases;
-
301 std::vector<uint> peduncle_objIDs;
-
302 std::vector<uint> inflorescence_objIDs;
-
303};
+
294 //state of the bud
+
295 BudState state = BUD_DORMANT;
+
296 //amount of time since the bud flowered (=0 if it has not yet flowered)
+
297 float time_counter = 0;
+
298 //=0 for axillary buds, =1 for terminal buds
+
299 bool isterminal = false;
+
300 //For axillary buds: index of the petiole within the internode that this floral bud originates from
+
301 //For terminal buds: index of the phytomer within the shoot that this floral bud originates from
+
302 uint parent_index = 0;
+
303 //Index of the bud within the petiole that this floral bud originates from
+
304 uint bud_index = 0;
+
305 //Scaling factor fraction of the fruit (if present), ranging from 0 to 1
+
306 float current_fruit_scale_factor = 1;
+
307 float previous_fruit_scale_factor = 0;
+
308
+
309
+
310
+
311 helios::vec3 base_position;
+
312 AxisRotation base_rotation;
+
313 helios::vec3 bending_axis;
+
314
+
315 std::vector<helios::vec3> inflorescence_bases;
+
316 std::vector<uint> peduncle_objIDs;
+
317 std::vector<uint> inflorescence_objIDs;
+
318};
-
304
-
-
305struct PhytomerParameters{
-
306private:
-
307
-
308 struct InternodeParameters{
-
309 RandomParameter_float pitch;
-
310 RandomParameter_float phyllotactic_angle;
-
311 RandomParameter_int max_vegetative_buds_per_petiole;
-
312 RandomParameter_int max_floral_buds_per_petiole;
-
313 helios::RGBcolor color;
-
314 std::string image_texture;
-
315 uint length_segments;
-
316 uint radial_subdivisions;
-
317
-
318 InternodeParameters& operator=(const InternodeParameters &a){
-
319 this->pitch = a.pitch;
-
320 this->pitch.resample();
-
321 this->phyllotactic_angle = a.phyllotactic_angle;
-
322 this->phyllotactic_angle.resample();
-
323 this->max_vegetative_buds_per_petiole = a.max_vegetative_buds_per_petiole;
-
324 this->max_vegetative_buds_per_petiole.resample();
-
325 this->max_floral_buds_per_petiole = a.max_floral_buds_per_petiole;
-
326 this->max_floral_buds_per_petiole.resample();
-
327 this->color = a.color;
-
328 this->image_texture = a.image_texture;
-
329 this->length_segments = a.length_segments;
-
330 this->radial_subdivisions = a.radial_subdivisions;
-
331 return *this;
-
332 }
-
333 };
-
334
-
335 struct PetioleParameters{
-
336 uint petioles_per_internode;
-
337 RandomParameter_float pitch;
-
338 RandomParameter_float radius;
-
339 RandomParameter_float length;
-
340 RandomParameter_float curvature;
-
341 RandomParameter_float taper;
-
342 helios::RGBcolor color;
-
343 uint length_segments;
-
344 uint radial_subdivisions;
-
345
-
346 PetioleParameters& operator=(const PetioleParameters &a){
-
347 this->petioles_per_internode = a.petioles_per_internode;
-
348 this->pitch = a.pitch;
-
349 this->pitch.resample();
-
350 this->radius = a.radius;
-
351 this->radius.resample();
-
352 this->length = a.length;
-
353 this->length.resample();
-
354 this->curvature = a.curvature;
-
355 this->curvature.resample();
-
356 this->taper = a.taper;
-
357 this->taper.resample();
-
358 this->color = a.color;
-
359 this->length_segments = a.length_segments;
-
360 this->radial_subdivisions = a.radial_subdivisions;
-
361 return *this;
-
362 }
-
363 };
-
364
-
365 struct LeafParameters{
-
366 RandomParameter_int leaves_per_petiole;
-
367 RandomParameter_float pitch;
-
368 RandomParameter_float yaw;
-
369 RandomParameter_float roll;
-
370 RandomParameter_float leaflet_offset;
-
371 RandomParameter_float leaflet_scale;
-
372 RandomParameter_float prototype_scale;
-
373 uint subdivisions;
-
374 uint unique_prototypes;
-
375 uint (*prototype_function)(helios::Context *, uint subdivisions, int compound_leaf_index) = nullptr;
-
376
-
377 LeafParameters& operator=(const LeafParameters &a){
-
378 this->leaves_per_petiole = a.leaves_per_petiole;
-
379 this->leaves_per_petiole.resample();
-
380 this->pitch = a.pitch;
-
381 this->pitch.resample();
-
382 this->yaw = a.yaw;
-
383 this->yaw.resample();
-
384 this->roll = a.roll;
-
385 this->roll.resample();
-
386 this->leaflet_offset = a.leaflet_offset;
-
387 this->leaflet_offset.resample();
-
388 this->leaflet_scale = a.leaflet_scale;
-
389 this->leaflet_scale.resample();
-
390 this->prototype_scale = a.prototype_scale;
-
391 this->prototype_scale.resample();
-
392 this->subdivisions = a.subdivisions;
-
393 this->unique_prototypes = a.unique_prototypes;
-
394 this->prototype_function = a.prototype_function;
-
395 return *this;
-
396 }
-
397 };
-
398
-
399 struct PeduncleParameters {
-
400 RandomParameter_float length;
-
401 RandomParameter_float radius;
-
402 RandomParameter_float pitch;
-
403 RandomParameter_float roll;
-
404 RandomParameter_float curvature;
-
405 helios::RGBcolor color;
-
406 uint length_segments;
-
407 uint radial_subdivisions;
-
408
-
409 PeduncleParameters &operator=(const PeduncleParameters &a) {
-
410 this->length = a.length;
-
411 this->length.resample();
-
412 this->radius = a.radius;
-
413 this->radius.resample();
-
414 this->pitch = a.pitch;
-
415 this->pitch.resample();
-
416 this->roll = a.roll;
-
417 this->roll.resample();
-
418 this->curvature = a.curvature;
-
419 this->curvature.resample();
-
420 this->color = a.color;
-
421 this->length_segments = a.length_segments;
-
422 this->radial_subdivisions = a.radial_subdivisions;
-
423 return *this;
-
424 }
-
425 };
-
426
-
427 struct InflorescenceParameters {
-
428 RandomParameter_int flowers_per_rachis;
-
429 RandomParameter_float flower_offset;
-
430 std::string flower_arrangement_pattern;
-
431 RandomParameter_float pitch;
-
432 RandomParameter_float roll;
-
433 RandomParameter_float flower_prototype_scale;
-
434 uint (*flower_prototype_function)(helios::Context *, uint subdivisions, bool flower_is_open) = nullptr;
-
435 RandomParameter_float fruit_prototype_scale;
-
436 uint (*fruit_prototype_function)(helios::Context *, uint subdivisions, float time_since_fruit_set) = nullptr;
-
437 RandomParameter_float fruit_gravity_factor_fraction;
-
438 uint unique_prototypes;
-
439
-
440 InflorescenceParameters &operator=(const InflorescenceParameters &a) {
-
441 this->flowers_per_rachis = a.flowers_per_rachis;
-
442 this->flowers_per_rachis.resample();
-
443 this->flower_offset = a.flower_offset;
-
444 this->flower_offset.resample();
-
445 this->flower_arrangement_pattern = a.flower_arrangement_pattern;
-
446 this->pitch = a.pitch;
-
447 this->pitch.resample();
-
448 this->roll = a.roll;
-
449 this->roll.resample();
-
450 this->flower_prototype_scale = a.flower_prototype_scale;
-
451 this->flower_prototype_scale.resample();
-
452 this->flower_prototype_function = a.flower_prototype_function;
-
453 this->fruit_prototype_scale = a.fruit_prototype_scale;
-
454 this->fruit_prototype_scale.resample();
-
455 this->fruit_prototype_function = a.fruit_prototype_function;
-
456 this->fruit_gravity_factor_fraction = a.fruit_gravity_factor_fraction;
-
457 this->fruit_gravity_factor_fraction.resample();
-
458 this->unique_prototypes = a.unique_prototypes;
-
459 return *this;
-
460 }
-
461 };
-
462
-
463public:
-
464
-
465 InternodeParameters internode;
-
466
-
467 PetioleParameters petiole;
-
468
-
469 LeafParameters leaf;
-
470
-
471 PeduncleParameters peduncle;
-
472
-
473 InflorescenceParameters inflorescence;
-
474
-
475 //Custom user-defined function that is called when a phytomer is created
-
483 void (*phytomer_creation_function)(std::shared_ptr<Phytomer> phytomer_ptr, uint shoot_node_index, uint parent_shoot_node_index, uint shoot_max_nodes, float plant_age) = nullptr;
-
484
-
485 //Custom user-defined function that is called for each phytomer on every time step
-
489 void (*phytomer_callback_function)(std::shared_ptr<Phytomer> phytomer_ptr) = nullptr;
-
490
-
491
-
493 PhytomerParameters();
-
494
-
496 explicit PhytomerParameters( std::minstd_rand0 *generator );
+
319
+
+
320struct PhytomerParameters{
+
321private:
+
322
+
323 struct InternodeParameters{
+
324 RandomParameter_float pitch;
+
325 RandomParameter_float phyllotactic_angle;
+
326 RandomParameter_int max_vegetative_buds_per_petiole;
+
327 RandomParameter_int max_floral_buds_per_petiole;
+
328 helios::RGBcolor color;
+
329 std::string image_texture;
+
330 uint length_segments;
+
331 uint radial_subdivisions;
+
332
+
333 InternodeParameters& operator=(const InternodeParameters &a){
+
334 this->pitch = a.pitch;
+
335 this->pitch.resample();
+
336 this->phyllotactic_angle = a.phyllotactic_angle;
+
337 this->phyllotactic_angle.resample();
+
338 this->max_vegetative_buds_per_petiole = a.max_vegetative_buds_per_petiole;
+
339 this->max_vegetative_buds_per_petiole.resample();
+
340 this->max_floral_buds_per_petiole = a.max_floral_buds_per_petiole;
+
341 this->max_floral_buds_per_petiole.resample();
+
342 this->color = a.color;
+
343 this->image_texture = a.image_texture;
+
344 this->length_segments = a.length_segments;
+
345 this->radial_subdivisions = a.radial_subdivisions;
+
346 return *this;
+
347 }
+
348 };
+
349
+
350 struct PetioleParameters{
+
351 uint petioles_per_internode;
+
352 RandomParameter_float pitch;
+
353 RandomParameter_float radius;
+
354 RandomParameter_float length;
+
355 RandomParameter_float curvature;
+
356 RandomParameter_float taper;
+
357 helios::RGBcolor color;
+
358 uint length_segments;
+
359 uint radial_subdivisions;
+
360
+
361 PetioleParameters& operator=(const PetioleParameters &a){
+
362 this->petioles_per_internode = a.petioles_per_internode;
+
363 this->pitch = a.pitch;
+
364 this->pitch.resample();
+
365 this->radius = a.radius;
+
366 this->radius.resample();
+
367 this->length = a.length;
+
368 this->length.resample();
+
369 this->curvature = a.curvature;
+
370 this->curvature.resample();
+
371 this->taper = a.taper;
+
372 this->taper.resample();
+
373 this->color = a.color;
+
374 this->length_segments = a.length_segments;
+
375 this->radial_subdivisions = a.radial_subdivisions;
+
376 return *this;
+
377 }
+
378 };
+
379
+
380 struct LeafParameters{
+
381 RandomParameter_int leaves_per_petiole;
+
382 RandomParameter_float pitch;
+
383 RandomParameter_float yaw;
+
384 RandomParameter_float roll;
+
385 RandomParameter_float leaflet_offset;
+
386 RandomParameter_float leaflet_scale;
+
387 RandomParameter_float prototype_scale;
+
388 uint subdivisions;
+
389 uint unique_prototypes;
+
390 uint (*prototype_function)(helios::Context *, uint subdivisions, int compound_leaf_index) = nullptr;
+
391
+
392 LeafParameters& operator=(const LeafParameters &a){
+
393 this->leaves_per_petiole = a.leaves_per_petiole;
+
394 this->leaves_per_petiole.resample();
+
395 this->pitch = a.pitch;
+
396 this->pitch.resample();
+
397 this->yaw = a.yaw;
+
398 this->yaw.resample();
+
399 this->roll = a.roll;
+
400 this->roll.resample();
+
401 this->leaflet_offset = a.leaflet_offset;
+
402 this->leaflet_offset.resample();
+
403 this->leaflet_scale = a.leaflet_scale;
+
404 this->leaflet_scale.resample();
+
405 this->prototype_scale = a.prototype_scale;
+
406 this->prototype_scale.resample();
+
407 this->subdivisions = a.subdivisions;
+
408 this->unique_prototypes = a.unique_prototypes;
+
409 this->prototype_function = a.prototype_function;
+
410 return *this;
+
411 }
+
412 };
+
413
+
414 struct PeduncleParameters {
+
415 RandomParameter_float length;
+
416 RandomParameter_float radius;
+
417 RandomParameter_float pitch;
+
418 RandomParameter_float roll;
+
419 RandomParameter_float curvature;
+
420 helios::RGBcolor color;
+
421 uint length_segments;
+
422 uint radial_subdivisions;
+
423
+
424 PeduncleParameters &operator=(const PeduncleParameters &a) {
+
425 this->length = a.length;
+
426 this->length.resample();
+
427 this->radius = a.radius;
+
428 this->radius.resample();
+
429 this->pitch = a.pitch;
+
430 this->pitch.resample();
+
431 this->roll = a.roll;
+
432 this->roll.resample();
+
433 this->curvature = a.curvature;
+
434 this->curvature.resample();
+
435 this->color = a.color;
+
436 this->length_segments = a.length_segments;
+
437 this->radial_subdivisions = a.radial_subdivisions;
+
438 return *this;
+
439 }
+
440 };
+
441
+
442 struct InflorescenceParameters {
+
443 RandomParameter_int flowers_per_peduncle;
+
444 RandomParameter_float flower_offset;
+
445 RandomParameter_float pitch;
+
446 RandomParameter_float roll;
+
447 RandomParameter_float flower_prototype_scale;
+
448 uint (*flower_prototype_function)(helios::Context *, uint subdivisions, bool flower_is_open) = nullptr;
+
449 RandomParameter_float fruit_prototype_scale;
+
450 uint (*fruit_prototype_function)(helios::Context *, uint subdivisions, float time_since_fruit_set) = nullptr;
+
451 RandomParameter_float fruit_gravity_factor_fraction;
+
452 uint unique_prototypes;
+
453
+
454 InflorescenceParameters &operator=(const InflorescenceParameters &a) {
+
455 this->flowers_per_peduncle = a.flowers_per_peduncle;
+
456 this->flowers_per_peduncle.resample();
+
457 this->flower_offset = a.flower_offset;
+
458 this->flower_offset.resample();
+
459 this->pitch = a.pitch;
+
460 this->pitch.resample();
+
461 this->roll = a.roll;
+
462 this->roll.resample();
+
463 this->flower_prototype_scale = a.flower_prototype_scale;
+
464 this->flower_prototype_scale.resample();
+
465 this->flower_prototype_function = a.flower_prototype_function;
+
466 this->fruit_prototype_scale = a.fruit_prototype_scale;
+
467 this->fruit_prototype_scale.resample();
+
468 this->fruit_prototype_function = a.fruit_prototype_function;
+
469 this->fruit_gravity_factor_fraction = a.fruit_gravity_factor_fraction;
+
470 this->fruit_gravity_factor_fraction.resample();
+
471 this->unique_prototypes = a.unique_prototypes;
+
472 return *this;
+
473 }
+
474 };
+
475
+
476public:
+
477
+
478 InternodeParameters internode;
+
479
+
480 PetioleParameters petiole;
+
481
+
482 LeafParameters leaf;
+
483
+
484 PeduncleParameters peduncle;
+
485
+
486 InflorescenceParameters inflorescence;
+
487
+
488 //Custom user-defined function that is called when a phytomer is created
+
496 void (*phytomer_creation_function)(std::shared_ptr<Phytomer> phytomer_ptr, uint shoot_node_index, uint parent_shoot_node_index, uint shoot_max_nodes, float plant_age) = nullptr;
497
-
498 friend class PlantArchitecture;
-
499 friend struct Phytomer;
-
500 friend struct Shoot;
-
501
-
502};
-
+
498 //Custom user-defined function that is called for each phytomer on every time step
+
502 void (*phytomer_callback_function)(std::shared_ptr<Phytomer> phytomer_ptr) = nullptr;
503
-
-
504struct ShootParameters{
-
505
-
507 ShootParameters();
-
508
-
510 explicit ShootParameters( std::minstd_rand0 *generator );
-
511
-
512 PhytomerParameters phytomer_parameters;
-
513
-
514 // ---- Geometric Parameters ---- //
-
515
-
516 // Maximum number of nodes along the shoot before the terminal vegetative bud dies
-
517 RandomParameter_int max_nodes;
+
504
+
506 PhytomerParameters();
+
507
+
509 explicit PhytomerParameters( std::minstd_rand0 *generator );
+
510
+
511 friend class PlantArchitecture;
+
512 friend struct Phytomer;
+
513 friend struct Shoot;
+
514
+
515};
+
+
516
+
+
517struct ShootParameters{
518
-
519 // Radius of phytomer internodes when they are first created
-
520 RandomParameter_float internode_radius_initial;
+
520 ShootParameters();
521
-
522 // Insertion angle of the most apical child shoot bud at the time it breaks
-
523 RandomParameter_float insertion_angle_tip;
-
524 RandomParameter_float insertion_angle_decay_rate;
-
525
-
526 RandomParameter_float internode_length_max;
-
527 RandomParameter_float internode_length_min;
-
528 RandomParameter_float internode_length_decay_rate;
-
529
-
530 RandomParameter_float base_roll;
-
531 RandomParameter_float base_yaw;
-
532
-
533 RandomParameter_float gravitropic_curvature; //degrees/length
+
523 explicit ShootParameters( std::minstd_rand0 *generator );
+
524
+
525 PhytomerParameters phytomer_parameters;
+
526
+
527 // ---- Geometric Parameters ---- //
+
528
+
529 // Maximum number of nodes along the shoot before the terminal vegetative bud dies
+
530 RandomParameter_int max_nodes;
+
531
+
532 // Radius of phytomer internodes when they are first created
+
533 RandomParameter_float internode_radius_initial;
534
-
535 RandomParameter_float tortuosity; //degrees/length (standard deviation of random curvature perturbation)
+
535 RandomParameter_float internode_radius_max; //meters
536
-
537 // ---- Growth Parameters ---- //
+
537 RandomParameter_float girth_area_factor; //cm^2 branch area / m^2 downstream leaf area
538
-
539 RandomParameter_float phyllochron; //phytomers/day
-
540 uint leaf_flush_count; //number of leaves in a 'flush' (=1 gives continuous leaf production)
-
541
-
542 RandomParameter_float elongation_rate; //length/day
-
543
-
544 RandomParameter_float girth_growth_rate; //1/day
-
545 RandomParameter_float internode_radius_max; //meters
+
539 // Insertion angle of the most apical child shoot bud at the time it breaks
+
540 RandomParameter_float insertion_angle_tip;
+
541 RandomParameter_float insertion_angle_decay_rate;
+
542
+
543 RandomParameter_float internode_length_max;
+
544 RandomParameter_float internode_length_min;
+
545 RandomParameter_float internode_length_decay_rate;
546
-
547 // Probability that bud with this shoot type will break and form a new shoot
-
548 RandomParameter_float vegetative_bud_break_probability;
+
547 RandomParameter_float base_roll;
+
548 RandomParameter_float base_yaw;
549
-
550 // Maximum number of floral buds at the shoot apex
-
551 RandomParameter_int max_terminal_floral_buds;
-
552
-
553 // Probability that a phytomer will flower
-
554 RandomParameter_float flower_bud_break_probability;
+
550 RandomParameter_float gravitropic_curvature; //degrees/length
+
551
+
552 RandomParameter_float tortuosity; //degrees/length (standard deviation of random curvature perturbation)
+
553
+
554 // ---- Growth Parameters ---- //
555
-
556 // Probability that a flower will set fruit
-
557 RandomParameter_float fruit_set_probability;
+
556 RandomParameter_float phyllochron; //phytomers/day
+
557 uint leaf_flush_count; //number of leaves in a 'flush' (=1 gives continuous leaf production)
558
-
559 RandomParameter_float vegetative_bud_break_time; //days
+
559 RandomParameter_float elongation_rate; //length/day
560
-
561 bool flowers_require_dormancy;
-
562 bool growth_requires_dormancy;
+
561 // Probability that bud with this shoot type will break and form a new shoot
+
562 RandomParameter_float vegetative_bud_break_probability;
563
-
564 bool determinate_shoot_growth; //true=determinate, false=indeterminate
-
565
-
566 // ---- Custom Functions ---- //
-
567
-
568 void defineChildShootTypes( const std::vector<std::string> &child_shoot_type_labels, const std::vector<float> &child_shoot_type_probabilities );
+
564 // Maximum number of floral buds at the shoot apex
+
565 RandomParameter_int max_terminal_floral_buds;
+
566
+
567 // Probability that a phytomer will flower
+
568 RandomParameter_float flower_bud_break_probability;
569
-
570 ShootParameters& operator=(const ShootParameters &a) {
-
571 this->phytomer_parameters = a.phytomer_parameters;
-
572 this->max_nodes = a.max_nodes;
-
573 this->max_nodes.resample();
-
574 this->internode_radius_initial = a.internode_radius_initial;
-
575 this->internode_radius_initial.resample();
-
576 this->phyllochron = a.phyllochron;
-
577 this->phyllochron.resample();
-
578 this->leaf_flush_count = a.leaf_flush_count;
-
579 this->elongation_rate = a.elongation_rate;
-
580 this->elongation_rate.resample();
-
581 this->girth_growth_rate = a.girth_growth_rate;
-
582 this->girth_growth_rate.resample();
-
583 this->internode_radius_max = a.internode_radius_max;
-
584 this->internode_radius_max.resample();
-
585 this->vegetative_bud_break_probability = a.vegetative_bud_break_probability;
-
586 this->vegetative_bud_break_probability.resample();
-
587 this->flower_bud_break_probability = a.flower_bud_break_probability;
-
588 this->flower_bud_break_probability.resample();
-
589 this->fruit_set_probability = a.fruit_set_probability;
-
590 this->fruit_set_probability.resample();
-
591 this->gravitropic_curvature = a.gravitropic_curvature;
-
592 this->gravitropic_curvature.resample();
-
593 this->tortuosity = a.tortuosity;
-
594 this->tortuosity.resample();
-
595 this->vegetative_bud_break_probability = a.vegetative_bud_break_probability;
-
596 this->vegetative_bud_break_probability.resample();
-
597 this->max_terminal_floral_buds = a.max_terminal_floral_buds;
-
598 this->max_terminal_floral_buds.resample();
-
599 this->flower_bud_break_probability = a.flower_bud_break_probability;
-
600 this->flower_bud_break_probability.resample();
-
601 this->fruit_set_probability = a.fruit_set_probability;
-
602 this->fruit_set_probability.resample();
-
603 this->vegetative_bud_break_time = a.vegetative_bud_break_time;
-
604 this->vegetative_bud_break_time.resample();
-
605 this->insertion_angle_tip = a.insertion_angle_tip;
-
606 this->insertion_angle_tip.resample();
-
607 this->insertion_angle_decay_rate = a.insertion_angle_decay_rate;
-
608 this->insertion_angle_decay_rate.resample();
-
609 this->internode_length_max = a.internode_length_max;
-
610 this->internode_length_max.resample();
-
611 this->internode_length_min = a.internode_length_min;
-
612 this->internode_length_min.resample();
-
613 this->internode_length_decay_rate = a.internode_length_decay_rate;
-
614 this->internode_length_decay_rate.resample();
-
615 this->base_roll = a.base_roll;
-
616 this->base_roll.resample();
-
617 this->base_yaw = a.base_yaw;
-
618 this->base_yaw.resample();
-
619 this->flowers_require_dormancy = a.flowers_require_dormancy;
-
620 this->growth_requires_dormancy = a.growth_requires_dormancy;
-
621 this->child_shoot_type_labels = a.child_shoot_type_labels;
-
622 this->child_shoot_type_probabilities = a.child_shoot_type_probabilities;
-
623 this->determinate_shoot_growth = a.determinate_shoot_growth;
-
624 return *this;
-
625 }
-
626
-
627 friend class PlantArchitecture;
-
628 friend struct Shoot;
-
629
-
630protected:
-
631
-
632 std::vector<std::string> child_shoot_type_labels;
-
633 std::vector<float> child_shoot_type_probabilities;
-
634
-
635};
-
-
636
-
-
637struct Phytomer {
-
638public:
-
639
-
640 float phytomer_carbohydrate_cost_molC =0;
-
641
-
642 // Constructor
-
643 Phytomer(const PhytomerParameters &params, Shoot *parent_shoot, uint phytomer_index, const helios::vec3 &parent_internode_axis, const helios::vec3 &parent_petiole_axis, helios::vec3 internode_base_origin,
-
644 const AxisRotation &shoot_base_rotation, float internode_radius, float internode_length_max, float internode_length_scale_factor_fraction, float leaf_scale_factor_fraction, uint rank, PlantArchitecture *plantarchitecture_ptr,
-
645 helios::Context *context_ptr);
-
646
-
647 // ---- query info about the phytomer ---- //
+
570 // Probability that a flower will set fruit
+
571 RandomParameter_float fruit_set_probability;
+
572
+
573 RandomParameter_float vegetative_bud_break_time; //days
+
574
+
575 bool flowers_require_dormancy;
+
576 bool growth_requires_dormancy;
+
577
+
578 bool determinate_shoot_growth; //true=determinate, false=indeterminate
+
579
+
580 // ---- Custom Functions ---- //
+
581
+
582 void defineChildShootTypes( const std::vector<std::string> &child_shoot_type_labels, const std::vector<float> &child_shoot_type_probabilities );
+
583
+
584 ShootParameters& operator=(const ShootParameters &a) {
+
585 this->phytomer_parameters = a.phytomer_parameters;
+
586 this->max_nodes = a.max_nodes;
+
587 this->max_nodes.resample();
+
588 this->internode_radius_initial = a.internode_radius_initial;
+
589 this->internode_radius_initial.resample();
+
590 this->phyllochron = a.phyllochron;
+
591 this->phyllochron.resample();
+
592 this->leaf_flush_count = a.leaf_flush_count;
+
593 this->elongation_rate = a.elongation_rate;
+
594 this->elongation_rate.resample();
+
595 this->girth_area_factor = a.girth_area_factor;
+
596 this->girth_area_factor.resample();
+
597 this->internode_radius_max = a.internode_radius_max;
+
598 this->internode_radius_max.resample();
+
599 this->vegetative_bud_break_probability = a.vegetative_bud_break_probability;
+
600 this->vegetative_bud_break_probability.resample();
+
601 this->flower_bud_break_probability = a.flower_bud_break_probability;
+
602 this->flower_bud_break_probability.resample();
+
603 this->fruit_set_probability = a.fruit_set_probability;
+
604 this->fruit_set_probability.resample();
+
605 this->gravitropic_curvature = a.gravitropic_curvature;
+
606 this->gravitropic_curvature.resample();
+
607 this->tortuosity = a.tortuosity;
+
608 this->tortuosity.resample();
+
609 this->vegetative_bud_break_probability = a.vegetative_bud_break_probability;
+
610 this->vegetative_bud_break_probability.resample();
+
611 this->max_terminal_floral_buds = a.max_terminal_floral_buds;
+
612 this->max_terminal_floral_buds.resample();
+
613 this->flower_bud_break_probability = a.flower_bud_break_probability;
+
614 this->flower_bud_break_probability.resample();
+
615 this->fruit_set_probability = a.fruit_set_probability;
+
616 this->fruit_set_probability.resample();
+
617 this->vegetative_bud_break_time = a.vegetative_bud_break_time;
+
618 this->vegetative_bud_break_time.resample();
+
619 this->insertion_angle_tip = a.insertion_angle_tip;
+
620 this->insertion_angle_tip.resample();
+
621 this->insertion_angle_decay_rate = a.insertion_angle_decay_rate;
+
622 this->insertion_angle_decay_rate.resample();
+
623 this->internode_length_max = a.internode_length_max;
+
624 this->internode_length_max.resample();
+
625 this->internode_length_min = a.internode_length_min;
+
626 this->internode_length_min.resample();
+
627 this->internode_length_decay_rate = a.internode_length_decay_rate;
+
628 this->internode_length_decay_rate.resample();
+
629 this->base_roll = a.base_roll;
+
630 this->base_roll.resample();
+
631 this->base_yaw = a.base_yaw;
+
632 this->base_yaw.resample();
+
633 this->flowers_require_dormancy = a.flowers_require_dormancy;
+
634 this->growth_requires_dormancy = a.growth_requires_dormancy;
+
635 this->child_shoot_type_labels = a.child_shoot_type_labels;
+
636 this->child_shoot_type_probabilities = a.child_shoot_type_probabilities;
+
637 this->determinate_shoot_growth = a.determinate_shoot_growth;
+
638 return *this;
+
639 }
+
640
+
641 friend class PlantArchitecture;
+
642 friend struct Shoot;
+
643
+
644protected:
+
645
+
646 std::vector<std::string> child_shoot_type_labels;
+
647 std::vector<float> child_shoot_type_probabilities;
648
-
649 std::vector<helios::vec3> getInternodeNodePositions() const;
+
649};
+
650
-
651 std::vector<float> getInternodeNodeRadii() const;
-
652
-
653 helios::vec3 getInternodeAxisVector( float stem_fraction ) const;
-
654
-
655 helios::vec3 getPetioleAxisVector(float stem_fraction, uint petiole_index) const;
-
656
-
657 static helios::vec3 getAxisVector( float stem_fraction, const std::vector<helios::vec3> &axis_vertices ) ;
-
658
-
659 float getInternodeLength() const;
+
+
651struct Phytomer {
+
652public:
+
653
+
654 float phytomer_carbohydrate_cost_molC =0;
+
655
+
656 // Constructor
+
657 Phytomer(const PhytomerParameters &params, Shoot *parent_shoot, uint phytomer_index, const helios::vec3 &parent_internode_axis, const helios::vec3 &parent_petiole_axis, helios::vec3 internode_base_origin,
+
658 const AxisRotation &shoot_base_rotation, float internode_radius, float internode_length_max, float internode_length_scale_factor_fraction, float leaf_scale_factor_fraction, uint rank, PlantArchitecture *plantarchitecture_ptr,
+
659 helios::Context *context_ptr);
660
-
661 float getInternodeRadius() const;
+
661 // ---- query info about the phytomer ---- //
662
-
663 float getPetioleLength() const;
+
663 std::vector<helios::vec3> getInternodeNodePositions() const;
664
-
665 float getInternodeRadius( float stem_fraction ) const;
+
665 std::vector<float> getInternodeNodeRadii() const;
666
-
667 bool hasLeaf() const;
+
667 helios::vec3 getInternodeAxisVector( float stem_fraction ) const;
668
-
669 // ---- modify the phytomer ---- //
+
669 helios::vec3 getPetioleAxisVector(float stem_fraction, uint petiole_index) const;
670
-
671 void setInternodeLengthScaleFraction(float internode_scale_factor_fraction, bool update_context_geometry);
+
671 static helios::vec3 getAxisVector( float stem_fraction, const std::vector<helios::vec3> &axis_vertices ) ;
672
+
673 float getInternodeLength() const;
674
-
677 void scaleInternodeMaxLength( float scale_factor );
+
675 float getInternodeRadius() const;
+
676
+
677 float getPetioleLength() const;
678
+
679 float getInternodeRadius( float stem_fraction ) const;
680
-
683 void setInternodeMaxLength( float internode_length_max_new );
+
681 bool hasLeaf() const;
+
682
+
683 float calculateDownstreamLeafArea() const;
684
+
685 // ---- modify the phytomer ---- //
686
-
689 void setInternodeMaxRadius( float internode_radius_max_new );
+
687 void setInternodeLengthScaleFraction(float internode_scale_factor_fraction, bool update_context_geometry);
+
688
690
-
692
-
695 void setLeafScaleFraction(float leaf_scale_factor_fraction );
+
693 void scaleInternodeMaxLength( float scale_factor );
+
694
696
-
698
-
701 void setLeafPrototypeScale( float leaf_prototype_scale );
+
699 void setInternodeMaxLength( float internode_length_max_new );
+
700
702
-
703 void scaleLeafPrototypeScale( float scale_factor );
-
704
-
705 void setInflorescenceScaleFraction(FloralBud &fbud, float inflorescence_scale_factor_fraction);
+
705 void setInternodeMaxRadius( float internode_radius_max_new );
706
-
707 void setPetioleBase( const helios::vec3 &base_position );
708
-
709 void rotateLeaf( uint petiole_index, uint leaf_index, const AxisRotation &rotation );
-
710
-
711 void setVegetativeBudState( BudState state );
+
711 void setLeafScaleFraction(float leaf_scale_factor_fraction );
712
-
713 void setVegetativeBudState(BudState state, uint petiole_index, uint bud_index);
714
-
715 void setVegetativeBudState( BudState state, VegetativeBud &vbud );
-
716
-
717 void setFloralBudState(BudState state );
+
717 void setLeafPrototypeScale( float leaf_prototype_scale );
718
-
719 void setFloralBudState(BudState state, uint petiole_index, uint bud_index);
+
719 void scaleLeafPrototypeScale( float scale_factor );
720
-
721 void setFloralBudState(BudState state, FloralBud &fbud);
+
721 void setInflorescenceScaleFraction(FloralBud &fbud, float inflorescence_scale_factor_fraction);
722
-
723 float calculateFruitConstructionCosts(const FloralBud &fbud);
+
723 void setPetioleBase( const helios::vec3 &base_position );
724
-
725 void removeLeaf();
+
725 void rotateLeaf( uint petiole_index, uint leaf_index, const AxisRotation &rotation );
726
-
727 // ---- phytomer data ---- //
+
727 void setVegetativeBudState( BudState state );
728
-
730 std::vector<std::vector<helios::vec3>> petiole_vertices; //first index is petiole within internode, second index is tube segment within petiole
-
731 std::vector<std::vector<helios::vec3>> leaf_bases; //first index is petiole within internode, second index is leaf within petiole
-
732 float internode_pitch, internode_phyllotactic_angle;
-
733
-
734 std::vector<std::vector<float>> petiole_radii; //first index is petiole within internode, second index is segment within petiole
-
735 std::vector<float> petiole_length; //index is petiole within internode
-
736 float petiole_pitch;
-
737 float petiole_curvature;
-
738 std::vector<std::vector<float>> leaf_size_max; //first index is petiole within internode, second index is leaf within petiole
-
739 std::vector<std::vector<AxisRotation>> leaf_rotation; //first index is petiole within internode, second index is leaf within petiole
+
729 void setVegetativeBudState(BudState state, uint petiole_index, uint bud_index);
+
730
+
731 void setVegetativeBudState( BudState state, VegetativeBud &vbud );
+
732
+
733 void setFloralBudState(BudState state );
+
734
+
735 void setFloralBudState(BudState state, uint petiole_index, uint bud_index);
+
736
+
737 void setFloralBudState(BudState state, FloralBud &fbud);
+
738
+
739 float calculateFruitConstructionCosts(const FloralBud &fbud);
740
-
741 std::vector<helios::RGBcolor> internode_colors;
-
742 std::vector<helios::RGBcolor> petiole_colors;
-
743
-
744 std::vector<std::vector<uint> > petiole_objIDs; //first index is petiole within internode, second index is segment within petiole
-
745 std::vector<std::vector<uint>> leaf_objIDs; //first index is petiole within internode, second index is leaf within petiole
-
746
-
747 PhytomerParameters phytomer_parameters;
-
748
-
749 uint rank;
-
751 helios::int3 shoot_index;
-
752
-
753 uint plantID;
-
754 uint parent_shoot_ID;
-
755 Shoot *parent_shoot_ptr;
+
741 void removeLeaf();
+
742
+
743 // ---- phytomer data ---- //
+
744
+
746 std::vector<std::vector<helios::vec3>> petiole_vertices; //first index is petiole within internode, second index is tube segment within petiole
+
747 std::vector<std::vector<helios::vec3>> leaf_bases; //first index is petiole within internode, second index is leaf within petiole
+
748 float internode_pitch, internode_phyllotactic_angle;
+
749
+
750 std::vector<std::vector<float>> petiole_radii; //first index is petiole within internode, second index is segment within petiole
+
751 std::vector<float> petiole_length; //index is petiole within internode
+
752 float petiole_pitch;
+
753 float petiole_curvature;
+
754 std::vector<std::vector<float>> leaf_size_max; //first index is petiole within internode, second index is leaf within petiole
+
755 std::vector<std::vector<AxisRotation>> leaf_rotation; //first index is petiole within internode, second index is leaf within petiole
756
-
758 float age = 0;
-
760 float time_since_dormancy = 0;
-
761 bool isdormant = false;
+
757 std::vector<helios::RGBcolor> internode_colors;
+
758 std::vector<helios::RGBcolor> petiole_colors;
+
759
+
760 std::vector<std::vector<uint> > petiole_objIDs; //first index is petiole within internode, second index is segment within petiole
+
761 std::vector<std::vector<uint>> leaf_objIDs; //first index is petiole within internode, second index is leaf within petiole
762
-
763 float current_internode_scale_factor = 1;
-
764 float current_leaf_scale_factor = 1;
-
765
-
766 std::vector<std::vector<VegetativeBud>> axillary_vegetative_buds; //first index is petiole within internode, second index is bud within petiole
-
767 std::vector<std::vector<FloralBud>> floral_buds; //first index is petiole within internode, second index is bud within petiole
+
763 PhytomerParameters phytomer_parameters;
+
764
+
765 uint rank;
+
767 helios::int3 shoot_index;
768
-
769 float internode_radius_initial;
-
770 float internode_radius_max;
-
771 float internode_length_max;
+
769 uint plantID;
+
770 uint parent_shoot_ID;
+
771 Shoot *parent_shoot_ptr;
772
-
773 bool build_context_geometry_petiole = true;
-
774 bool build_context_geometry_peduncle = true;
-
775
-
776protected:
-
777
-
778 helios::vec3 inflorescence_bending_axis;
-
779
-
780 helios::Context *context_ptr;
+
774 float age = 0;
+
776 float time_since_dormancy = 0;
+
777 bool isdormant = false;
+
778
+
779 float current_internode_scale_factor = 1;
+
780 float current_leaf_scale_factor = 1;
781
-
782 PlantArchitecture *plantarchitecture_ptr;
-
783
-
784 void updateInflorescence(FloralBud &fbud);
-
785
-
786 float calculatePhytomerConstructionCosts();
-
787 float calculateFlowerConstructionCosts(const FloralBud &fbud);
+
782 std::vector<std::vector<VegetativeBud>> axillary_vegetative_buds; //first index is petiole within internode, second index is bud within petiole
+
783 std::vector<std::vector<FloralBud>> floral_buds; //first index is petiole within internode, second index is bud within petiole
+
784
+
785 float internode_radius_initial;
+
786 float internode_radius_max;
+
787 float internode_length_max;
788
-
789 friend struct Shoot;
-
790 friend class PlantArchitecture;
+
789 bool build_context_geometry_petiole = true;
+
790 bool build_context_geometry_peduncle = true;
791
-
792};
-
+
792protected:
793
-
-
794struct Shoot {
+
794 helios::vec3 inflorescence_bending_axis;
795
-
796 Shoot(uint plant_ID, int shoot_ID, int parent_shoot_ID, uint parent_node, uint parent_petiole_index, uint rank, const helios::vec3 &shoot_base_position, const AxisRotation &shoot_base_rotation, uint current_node_number,
-
797 float internode_length_shoot_initial, ShootParameters &shoot_params, std::string shoot_type_label, PlantArchitecture *plant_architecture_ptr);
-
798
-
799 void buildShootPhytomers(float internode_radius, float internode_length, float internode_length_scale_factor_fraction, float leaf_scale_factor_fraction, float radius_taper);
-
800
-
802
-
809 int appendPhytomer(float internode_radius, float internode_length_max, float internode_length_scale_factor_fraction, float leaf_scale_factor_fraction);
-
810
-
812
-
816 bool sampleChildShootType(std::string &child_shoot_type_label) const;
-
817
-
819
-
824 uint sampleEpicormicShoot( float dt, std::vector<float> &epicormic_positions_fraction );
-
825
-
826 void terminateApicalBud();
-
827
-
828 void terminateAxillaryVegetativeBuds();
-
829
-
830 void addTerminalFloralBud();
-
831
-
832 float calculateShootInternodeVolume() const;
+
796 helios::Context *context_ptr;
+
797
+
798 PlantArchitecture *plantarchitecture_ptr;
+
799
+
800 void updateInflorescence(FloralBud &fbud);
+
801
+
802 float calculatePhytomerConstructionCosts();
+
803 float calculateFlowerConstructionCosts(const FloralBud &fbud);
+
804
+
805 friend struct Shoot;
+
806 friend class PlantArchitecture;
+
807
+
808};
+
+
809
+
+
810struct Shoot {
+
811
+
812 Shoot(uint plant_ID, int shoot_ID, int parent_shoot_ID, uint parent_node, uint parent_petiole_index, uint rank, const helios::vec3 &shoot_base_position, const AxisRotation &shoot_base_rotation, uint current_node_number,
+
813 float internode_length_shoot_initial, ShootParameters &shoot_params, std::string shoot_type_label, PlantArchitecture *plant_architecture_ptr);
+
814
+
815 void buildShootPhytomers(float internode_radius, float internode_length, float internode_length_scale_factor_fraction, float leaf_scale_factor_fraction, float radius_taper);
+
816
+
818
+
825 int appendPhytomer(float internode_radius, float internode_length_max, float internode_length_scale_factor_fraction, float leaf_scale_factor_fraction);
+
826
+
828
+
832 bool sampleChildShootType(std::string &child_shoot_type_label) const;
833
-
834 float calculateShootLength() const;
835
-
837 void updateShootNodes(bool update_context_geometry = true );
-
838
-
839 helios::vec3 getShootAxisVector( float shoot_fraction ) const;
-
840
-
841 uint current_node_number;
-
842
-
843 helios::vec3 base_position;
-
844 AxisRotation base_rotation;
-
845 helios::vec3 radial_outward_axis;
-
846
-
847 const int ID;
-
848 const int parent_shoot_ID;
-
849 const uint plantID;
-
850 const uint parent_node_index;
-
851 const uint rank;
-
852 const uint parent_petiole_index;
-
853
-
854 float carbohydrate_pool_molC; // mol C
-
855 float old_shoot_volume = 0;
+
840 uint sampleEpicormicShoot( float dt, std::vector<float> &epicormic_positions_fraction );
+
841
+
842 void terminateApicalBud();
+
843
+
844 void terminateAxillaryVegetativeBuds();
+
845
+
846 void addTerminalFloralBud();
+
847
+
848 float calculateShootInternodeVolume() const;
+
849
+
850 float calculateShootLength() const;
+
851
+
853 void updateShootNodes(bool update_context_geometry = true );
+
854
+
855 helios::vec3 getShootAxisVector( float shoot_fraction ) const;
856
-
857 uint days_with_negative_carbon_balance = 0;
+
857 float sumShootLeafArea( uint start_node_index = 0 ) const;
858
-
859 void breakDormancy();
-
860 void makeDormant();
-
861
-
862 bool isdormant;
-
863 uint dormancy_cycles = 0;
+
859 uint current_node_number;
+
860
+
861 helios::vec3 base_position;
+
862 AxisRotation base_rotation;
+
863 helios::vec3 radial_outward_axis;
864
-
865 bool meristem_is_alive = true;
-
866
-
867 float phyllochron_counter = 0;
-
868
-
869 float curvature_perturbation = 0;
-
870 float yaw_perturbation = 0;
+
865 const int ID;
+
866 const int parent_shoot_ID;
+
867 const uint plantID;
+
868 const uint parent_node_index;
+
869 const uint rank;
+
870 const uint parent_petiole_index;
871
-
872 float gravitropic_curvature = 0;
-
873
-
874 const float internode_length_max_shoot_initial;
-
875
-
876 uint internode_tube_objID = 4294967294;
-
877
-
878 std::vector<std::vector<helios::vec3>> shoot_internode_vertices; //first index is phytomer within shoot, second index is segment within phytomer internode tube
-
879 std::vector<std::vector<float>> shoot_internode_radii; //first index is phytomer within shoot, second index is segment within phytomer internode tube
-
880
-
881 bool build_context_geometry_internode = true;
+
872 float carbohydrate_pool_molC; // mol C
+
873 float old_shoot_volume = 0;
+
874
+
875 uint days_with_negative_carbon_balance = 0;
+
876
+
877 void breakDormancy();
+
878 void makeDormant();
+
879
+
880 bool isdormant;
+
881 uint dormancy_cycles = 0;
882
-
883 //map of node number (key) to ID of shoot child (value)
-
884 std::map<int,int> childIDs;
-
885
-
886 ShootParameters shoot_parameters;
-
887
-
888 std::string shoot_type_label;
+
883 bool meristem_is_alive = true;
+
884
+
885 float phyllochron_counter = 0;
+
886
+
887 float curvature_perturbation = 0;
+
888 float yaw_perturbation = 0;
889
-
890 std::vector<std::shared_ptr<Phytomer> > phytomers;
+
890 float gravitropic_curvature = 0;
891
-
892 PlantArchitecture* plantarchitecture_ptr;
+
892 const float internode_length_max_shoot_initial;
893
-
894 helios::Context *context_ptr;
+
894 uint internode_tube_objID = 4294967294;
895
-
896};
+
896 std::vector<std::vector<helios::vec3>> shoot_internode_vertices; //first index is phytomer within shoot, second index is segment within phytomer internode tube
+
897 std::vector<std::vector<float>> shoot_internode_radii; //first index is phytomer within shoot, second index is segment within phytomer internode tube
+
898
+
899 bool build_context_geometry_internode = true;
+
900
+
901 //map of node number (key) to IDs of shoot children (value)
+
902 std::map<int,std::vector<int> > childIDs;
+
903
+
904 ShootParameters shoot_parameters;
+
905
+
906 std::string shoot_type_label;
+
907
+
908 std::vector<std::shared_ptr<Phytomer> > phytomers;
+
909
+
910 PlantArchitecture* plantarchitecture_ptr;
+
911
+
912 helios::Context *context_ptr;
+
913
+
914};
-
897
-
-
898struct PlantInstance{
-
899
-
900 PlantInstance(const helios::vec3 &a_base_position, float a_current_age, helios::Context *a_context_ptr) : base_position(a_base_position), current_age(a_current_age), context_ptr(a_context_ptr) {}
-
901 std::vector<std::shared_ptr<Shoot> > shoot_tree;
-
902 helios::vec3 base_position;
-
903 float current_age;
-
904 helios::Context *context_ptr;
-
905 std::pair<std::string,float> epicormic_shoot_probability_perlength_per_day; //.first is the epicormic shoot label string, .second is the probability
-
906
-
907 //Phenological thresholds
-
908 float dd_to_dormancy_break = 0;
-
909 float dd_to_flower_initiation = 0;
-
910 float dd_to_flower_opening = 0;
-
911 float dd_to_fruit_set = 0;
-
912 float dd_to_fruit_maturity = 0;
-
913 float dd_to_senescence = 0;
-
914
-
915};
+
915
+
+
916struct PlantInstance{
+
917
+
918 PlantInstance(const helios::vec3 &a_base_position, float a_current_age, helios::Context *a_context_ptr) : base_position(a_base_position), current_age(a_current_age), context_ptr(a_context_ptr) {}
+
919 std::vector<std::shared_ptr<Shoot> > shoot_tree;
+
920 helios::vec3 base_position;
+
921 float current_age;
+
922 helios::Context *context_ptr;
+
923 std::pair<std::string,float> epicormic_shoot_probability_perlength_per_day; //.first is the epicormic shoot label string, .second is the probability
+
924
+
925 //Phenological thresholds
+
926 float dd_to_dormancy_break = 0;
+
927 float dd_to_flower_initiation = 0;
+
928 float dd_to_flower_opening = 0;
+
929 float dd_to_fruit_set = 0;
+
930 float dd_to_fruit_maturity = 0;
+
931 float dd_to_senescence = 0;
+
932 bool is_evergreen = false;
+
933
+
934};
-
916
-
-
917class PlantArchitecture{
-
918public:
-
919
-
921
-
924 explicit PlantArchitecture( helios::Context* context_ptr );
-
925
-
927 static int selfTest();
-
928
-
930
-
933 void optionalOutputObjectData( const std::string &object_data_label );
-
934
-
936
-
939 void optionalOutputObjectData( const std::vector<std::string> &object_data_labels );
+
935
+
+
936class PlantArchitecture{
+
937public:
+
938
940
-
941 // ********* Methods for Building Plants from Existing Library ********* //
-
942
+
943 explicit PlantArchitecture( helios::Context* context_ptr );
944
-
947 void loadPlantModelFromLibrary( const std::string &plant_label );
-
948
-
950
-
955 uint buildPlantInstanceFromLibrary( const helios::vec3 &base_position, float age );
-
956
-
958
-
965 std::vector<uint> buildPlantCanopyFromLibrary(const helios::vec3 &canopy_center_position, const helios::vec2 &plant_spacing_xy, const helios::int2 &plant_count_xy, float age );
-
966
-
968
-
972 ShootParameters getCurrentShootParameters( const std::string &shoot_type_label );
-
973
+
946 static int selfTest();
+
947
+
949
+
952 void optionalOutputObjectData( const std::string &object_data_label );
+
953
+
955
+
958 void optionalOutputObjectData( const std::vector<std::string> &object_data_labels );
+
959
+
960 // ********* Methods for Building Plants from Existing Library ********* //
+
961
+
963
+
966 void loadPlantModelFromLibrary( const std::string &plant_label );
+
967
+
969
+
974 uint buildPlantInstanceFromLibrary( const helios::vec3 &base_position, float age );
975
-
978 std::map<std::string, ShootParameters> getCurrentShootParameters( );
-
979
-
981
-
986 void updateCurrentShootParameters( const std::string &shoot_type_label, const ShootParameters &params );
+
977
+
984 std::vector<uint> buildPlantCanopyFromLibrary(const helios::vec3 &canopy_center_position, const helios::vec2 &plant_spacing_xy, const helios::int2 &plant_count_xy, float age );
+
985
987
-
989
-
994 void updateCurrentShootParameters( const std::map<std::string, ShootParameters> &params );
-
995
-
996 // ********* Methods for Building Custom Plant Geometry from Scratch ********* //
-
997
-
999
-
1004 uint addPlantInstance(const helios::vec3 &base_position, float current_age);
-
1005
-
1007
-
1013 uint duplicatePlantInstance(uint plantID, const helios::vec3 &base_position, const AxisRotation &base_rotation, float current_age);
+
991 ShootParameters getCurrentShootParameters( const std::string &shoot_type_label );
+
992
+
994
+
997 std::map<std::string, ShootParameters> getCurrentShootParameters( );
+
998
+
1000
+
1005 void updateCurrentShootParameters( const std::string &shoot_type_label, const ShootParameters &params );
+
1006
+
1008
+
1013 void updateCurrentShootParameters( const std::map<std::string, ShootParameters> &params );
1014
+
1015 // ********* Methods for Building Custom Plant Geometry from Scratch ********* //
1016
-
1019 void deletePlantInstance(uint plantID);
-
1020
-
1022
-
1025 void deletePlantInstance( const std::vector<uint> &plantIDs );
+
1018
+
1023 uint addPlantInstance(const helios::vec3 &base_position, float current_age);
+
1024
1026
-
1028
-
1038 void setPlantPhenologicalThresholds(uint plantID, float time_to_leaf_out, float time_to_flower_initiation, float time_to_flower_opening, float time_to_fruit_set, float time_to_fruit_maturity, float time_to_senescence);
+
1032 uint duplicatePlantInstance(uint plantID, const helios::vec3 &base_position, const AxisRotation &base_rotation, float current_age);
+
1033
+
1035
+
1038 void deletePlantInstance(uint plantID);
1039
-
1040 void disablePlantPhenology( uint plantID );
1041
-
1043
-
1046 void advanceTime( float dt );
+
1044 void deletePlantInstance( const std::vector<uint> &plantIDs );
+
1045
1047
-
1049
-
1053 void advanceTime( uint plantID, float dt );
-
1054
-
1055 // -- plant building methods -- //
-
1056
-
1058
-
1062 void defineShootType( const std::string &shoot_type_label, const ShootParameters &shoot_params );
+
1058 void setPlantPhenologicalThresholds(uint plantID, float time_to_dormancy_break, float time_to_flower_initiation, float time_to_flower_opening, float time_to_fruit_set, float time_to_fruit_maturity, float time_to_senescence, bool is_evergreen=false);
+
1059
+
1060 void disablePlantPhenology( uint plantID );
+
1061
1063
-
1065
-
1077 uint addBaseStemShoot(uint plantID, uint current_node_number, const AxisRotation &base_rotation, float internode_radius, float internode_length_max, float internode_length_scale_factor_fraction, float leaf_scale_factor_fraction,
-
1078 float radius_taper, const std::string &shoot_type_label);
-
1079
-
1081
-
1094 uint appendShoot(uint plantID, int parent_shoot_ID, uint current_node_number, const AxisRotation &base_rotation, float internode_radius, float internode_length_max, float internode_length_scale_factor_fraction, float leaf_scale_factor_fraction,
-
1095 float radius_taper, const std::string &shoot_type_label);
-
1096
-
1098
-
1113 uint addChildShoot(uint plantID, int parent_shoot_ID, uint parent_node_index, uint current_node_number, const AxisRotation &shoot_base_rotation, float internode_radius, float internode_length_max,
-
1114 float internode_length_scale_factor_fraction, float leaf_scale_factor_fraction, float radius_taper, const std::string &shoot_type_label, uint petiole_index = 0);
-
1115
-
1117
-
1131 uint addEpicormicShoot(uint plantID, int parent_shoot_ID, float parent_position_fraction, uint current_node_number, float zenith_perturbation_degrees, float internode_radius, float internode_length_max,
-
1132 float internode_length_scale_factor_fraction, float leaf_scale_factor_fraction, float radius_taper, const std::string &shoot_type_label);
-
1133
+
1066 void advanceTime( float dt );
+
1067
+
1069
+
1073 void advanceTime( uint plantID, float dt );
+
1074
+
1075 // -- plant building methods -- //
+
1076
+
1078
+
1082 void defineShootType( const std::string &shoot_type_label, const ShootParameters &shoot_params );
+
1083
+
1085
+
1097 uint addBaseStemShoot(uint plantID, uint current_node_number, const AxisRotation &base_rotation, float internode_radius, float internode_length_max, float internode_length_scale_factor_fraction, float leaf_scale_factor_fraction,
+
1098 float radius_taper, const std::string &shoot_type_label);
+
1099
+
1101
+
1114 uint appendShoot(uint plantID, int parent_shoot_ID, uint current_node_number, const AxisRotation &base_rotation, float internode_radius, float internode_length_max, float internode_length_scale_factor_fraction, float leaf_scale_factor_fraction,
+
1115 float radius_taper, const std::string &shoot_type_label);
+
1116
+
1118
+
1133 uint addChildShoot(uint plantID, int parent_shoot_ID, uint parent_node_index, uint current_node_number, const AxisRotation &shoot_base_rotation, float internode_radius, float internode_length_max,
+
1134 float internode_length_scale_factor_fraction, float leaf_scale_factor_fraction, float radius_taper, const std::string &shoot_type_label, uint petiole_index = 0);
1135
-
1145 int appendPhytomerToShoot(uint plantID, uint shootID, const PhytomerParameters &phytomer_parameters, float internode_radius, float internode_length_max, float internode_length_scale_factor_fraction, float leaf_scale_factor_fraction);
-
1146
-
1148
-
1154 void enableEpicormicChildShoots(uint plantID, const std::string &epicormic_shoot_type_label, float epicormic_probability_perlength_perday);
+
1137
+
1151 uint addEpicormicShoot(uint plantID, int parent_shoot_ID, float parent_position_fraction, uint current_node_number, float zenith_perturbation_degrees, float internode_radius, float internode_length_max,
+
1152 float internode_length_scale_factor_fraction, float leaf_scale_factor_fraction, float radius_taper, const std::string &shoot_type_label);
+
1153
1155
-
1157 void disableInternodeContextBuild();
-
1158
-
1160 void disablePetioleContextBuild();
-
1161
-
1163 void disablePeduncleContextBuild();
-
1164
+
1165 int appendPhytomerToShoot(uint plantID, uint shootID, const PhytomerParameters &phytomer_parameters, float internode_radius, float internode_length_max, float internode_length_scale_factor_fraction, float leaf_scale_factor_fraction);
1166
-
1169 void enableGroundClipping( float ground_height = 0.f );
-
1170
-
1171 // -- methods for modifying the current plant state -- //
-
1172
-
1173 void initializePlantCarbohydratePool(uint plantID, float carbohydrate_concentration_molC_m3 );
-
1174
-
1175 void initializeShootCarbohydratePool(uint plantID, uint shootID, float carbohydrate_concentration_molC_m3 );
-
1176
-
1177 void incrementPhytomerInternodeGirth(uint plantID, uint shootID, uint node_number, float girth_change, bool update_context_geometry = true);
+
1168
+
1174 void enableEpicormicChildShoots(uint plantID, const std::string &epicormic_shoot_type_label, float epicormic_probability_perlength_perday);
+
1175
+
1177 void disableInternodeContextBuild();
1178
-
1179 void updateShootInternodeLength(uint plantID, uint shootID, float dt, bool update_context_geometry = true );
-
1180
-
1181 void setPhytomerLeafScale(uint plantID, uint shootID, uint node_number, float leaf_scale_factor_fraction);
-
1182
-
1183// void setShootOrigin(uint plantID, uint shootID, const helios::vec3 &origin);
+
1180 void disablePetioleContextBuild();
+
1181
+
1183 void disablePeduncleContextBuild();
1184
-
1185 void setPlantBasePosition(uint plantID, const helios::vec3 &base_position);
1186
-
1187 void setPlantAge(uint plantID, float current_age);
-
1188
-
1189 void harvestPlant(uint plantID);
+
1189 void enableGroundClipping( float ground_height = 0.f );
1190
-
1191 void removeShootLeaves(uint plantID, uint shootID);
+
1191 // -- methods for modifying the current plant state -- //
1192
-
1193 void removePlantLeaves(uint plantID );
+
1193 void initializePlantCarbohydratePool(uint plantID, float carbohydrate_concentration_molC_m3 );
1194
-
1195 void makePlantDormant( uint plantID );
+
1195 void initializeShootCarbohydratePool(uint plantID, uint shootID, float carbohydrate_concentration_molC_m3 );
1196
-
1197 void breakPlantDormancy( uint plantID );
+
1197 void incrementPhytomerInternodeGirth(uint plantID, uint shootID, uint node_number, bool update_context_geometry);
1198
-
1199 // -- methods for querying information about the plant -- //
+
1199 void setPhytomerLeafScale(uint plantID, uint shootID, uint node_number, float leaf_scale_factor_fraction);
1200
-
1201 float getPlantAge(uint plantID) const;
+
1201// void setShootOrigin(uint plantID, uint shootID, const helios::vec3 &origin);
1202
-
1203 uint getShootNodeCount( uint plantID, uint shootID ) const;
+
1203 void setPlantBasePosition(uint plantID, const helios::vec3 &base_position);
1204
-
1205 float getShootTaper( uint plantID, uint shootID ) const;
+
1205 void setPlantAge(uint plantID, float current_age);
1206
-
1207 helios::vec3 getPlantBasePosition(uint plantID) const;
+
1207 void harvestPlant(uint plantID);
1208
+
1209 void removeShootLeaves(uint plantID, uint shootID);
1210
-
1214 std::vector<uint> getAllPlantObjectIDs(uint plantID) const;
-
1215
-
1217
-
1221 std::vector<uint> getAllPlantUUIDs(uint plantID) const;
+
1211 void removePlantLeaves(uint plantID );
+
1212
+
1213 void makePlantDormant( uint plantID );
+
1214
+
1215 void breakPlantDormancy( uint plantID );
+
1216
+
1217 // -- methods for querying information about the plant -- //
+
1218
+
1219 float getPlantAge(uint plantID) const;
+
1220
+
1221 uint getShootNodeCount( uint plantID, uint shootID ) const;
1222
+
1223 float getShootTaper( uint plantID, uint shootID ) const;
1224
-
1228 std::vector<uint> getPlantInternodeObjectIDs(uint plantID) const;
-
1229
-
1231
-
1235 std::vector<uint> getPlantPetioleObjectIDs(uint plantID) const;
-
1236
-
1238
-
1242 std::vector<uint> getPlantLeafObjectIDs(uint plantID) const;
-
1243
-
1245
-
1249 std::vector<uint> getPlantPeduncleObjectIDs(uint plantID) const;
-
1250
-
1252
-
1256 std::vector<uint> getPlantFlowerObjectIDs(uint plantID) const;
-
1257
-
1259
-
1263 std::vector<uint> getPlantFruitObjectIDs(uint plantID) const;
-
1264
-
1265 // -- manual plant generation from input string -- //
-
1266
-
1267 std::string getPlantString(uint plantID) const;
+
1225 helios::vec3 getPlantBasePosition(uint plantID) const;
+
1226
+
1228
+
1232 float sumPlantLeafArea(uint plantID) const;
+
1233
+
1235
+
1239 std::vector<uint> getAllPlantObjectIDs(uint plantID) const;
+
1240
+
1242
+
1246 std::vector<uint> getAllPlantUUIDs(uint plantID) const;
+
1247
+
1249
+
1253 std::vector<uint> getPlantInternodeObjectIDs(uint plantID) const;
+
1254
+
1256
+
1260 std::vector<uint> getPlantPetioleObjectIDs(uint plantID) const;
+
1261
+
1263
+
1267 std::vector<uint> getPlantLeafObjectIDs(uint plantID) const;
1268
-
1269 uint generatePlantFromString(const std::string &generation_string, const PhytomerParameters &phytomer_parameters);
1270
-
1271 uint generatePlantFromString(const std::string &generation_string, const std::map<std::string,PhytomerParameters> &phytomer_parameters);
-
1272
-
1273 void writePlantStructureXML(uint plantID, const std::string &filename) const;
-
1274
-
1275 std::vector<uint> readPlantStructureXML( const std::string &filename, bool quiet = false);
-
1276
-
1277 friend struct Phytomer;
-
1278 friend struct Shoot;
-
1279
-
1280protected:
-
1281
-
1282 helios::Context* context_ptr;
-
1283
-
1284 std::minstd_rand0 *generator = nullptr;
-
1285
-
1286 uint plant_count = 0;
-
1287
-
1288 std::string current_plant_model;
+
1274 std::vector<uint> getPlantPeduncleObjectIDs(uint plantID) const;
+
1275
+
1277
+
1281 std::vector<uint> getPlantFlowerObjectIDs(uint plantID) const;
+
1282
+
1284
+
1288 std::vector<uint> getPlantFruitObjectIDs(uint plantID) const;
1289
-
1290 std::map<uint,PlantInstance> plant_instances;
+
1290 // -- manual plant generation from input string -- //
1291
-
1292 std::string makeShootString(const std::string &current_string, const std::shared_ptr<Shoot> &shoot, const std::vector<std::shared_ptr<Shoot>> & shoot_tree) const;
+
1292 std::string getPlantString(uint plantID) const;
1293
-
1294 std::map<std::string,ShootParameters> shoot_types;
+
1294 uint generatePlantFromString(const std::string &generation_string, const PhytomerParameters &phytomer_parameters);
1295
-
1296 // Key is the shoot string label; value first index is the unique leaf prototype, second index is the leaflet along a compound leaf (if applicable)
-
1297 std::map<std::string,std::vector<std::vector<uint>> > unique_leaf_prototype_objIDs;
-
1298
-
1299 // Key is the shoot string label; value index is the unique flower prototype
-
1300 std::map<std::string,std::vector<uint> > unique_open_flower_prototype_objIDs;
-
1301 // Key is the shoot string label; value index is the unique flower prototype
-
1302 std::map<std::string,std::vector<uint> > unique_closed_flower_prototype_objIDs;
-
1303 // Key is the shoot string label; value index is the unique fruit prototype
-
1304 std::map<std::string,std::vector<uint> > unique_fruit_prototype_objIDs;
-
1305
-
1306 bool build_context_geometry_internode = true;
-
1307 bool build_context_geometry_petiole = true;
-
1308 bool build_context_geometry_peduncle = true;
-
1309
-
1310 float ground_clipping_height = -99999;
-
1311
-
1312 void validateShootTypes( ShootParameters &shoot_parameters ) const;
-
1313
-
1314 void parseStringShoot(const std::string &LString_shoot, uint plantID, int parentID, uint parent_node, const std::map<std::string, PhytomerParameters> &phytomer_parameters, ShootParameters &shoot_parameters);
-
1315
-
1316 void parseShootArgument(const std::string &shoot_argument, const std::map<std::string, PhytomerParameters> &phytomer_parameters, ShootParameters &shoot_parameters, AxisRotation &base_rotation, std::string &phytomer_label);
-
1317
-
1318 void parseInternodeArgument(const std::string &internode_argument, float &internode_radius, float &internode_length, PhytomerParameters &phytomer_parameters);
-
1319
-
1320 void parsePetioleArgument(const std::string& petiole_argument, PhytomerParameters &phytomer_parameters );
-
1321
-
1322 void parseLeafArgument(const std::string& leaf_argument, PhytomerParameters &phytomer_parameters );
+
1296 uint generatePlantFromString(const std::string &generation_string, const std::map<std::string,PhytomerParameters> &phytomer_parameters);
+
1297
+
1298 void writePlantStructureXML(uint plantID, const std::string &filename) const;
+
1299
+
1300 std::vector<uint> readPlantStructureXML( const std::string &filename, bool quiet = false);
+
1301
+
1302 friend struct Phytomer;
+
1303 friend struct Shoot;
+
1304
+
1305protected:
+
1306
+
1307 helios::Context* context_ptr;
+
1308
+
1309 std::minstd_rand0 *generator = nullptr;
+
1310
+
1311 uint plant_count = 0;
+
1312
+
1313 std::string current_plant_model;
+
1314
+
1315 std::map<uint,PlantInstance> plant_instances;
+
1316
+
1317 std::string makeShootString(const std::string &current_string, const std::shared_ptr<Shoot> &shoot, const std::vector<std::shared_ptr<Shoot>> & shoot_tree) const;
+
1318
+
1319 std::map<std::string,ShootParameters> shoot_types;
+
1320
+
1321 // Key is the shoot string label; value first index is the unique leaf prototype, second index is the leaflet along a compound leaf (if applicable)
+
1322 std::map<std::string,std::vector<std::vector<uint>> > unique_leaf_prototype_objIDs;
1323
-
1324// void shiftDownstreamShoots(uint plantID, std::vector<std::shared_ptr<Shoot>> &shoot_tree, std::shared_ptr<Shoot> parent_shoot_ptr, const helios::vec3 &base_position );
-
1325
-
1326 void initializeDefaultShoots( const std::string &plant_label );
-
1327
-
1328 bool detectGroundCollision(uint objID);
-
1329
-
1330 bool detectGroundCollision(const std::vector<uint> &objID);
-
1331
-
1333 std::map<std::string,bool> output_object_data;
+
1324 // Key is the shoot string label; value index is the unique flower prototype
+
1325 std::map<std::string,std::vector<uint> > unique_open_flower_prototype_objIDs;
+
1326 // Key is the shoot string label; value index is the unique flower prototype
+
1327 std::map<std::string,std::vector<uint> > unique_closed_flower_prototype_objIDs;
+
1328 // Key is the shoot string label; value index is the unique fruit prototype
+
1329 std::map<std::string,std::vector<uint> > unique_fruit_prototype_objIDs;
+
1330
+
1331 bool build_context_geometry_internode = true;
+
1332 bool build_context_geometry_petiole = true;
+
1333 bool build_context_geometry_peduncle = true;
1334
-
1335 // --- Carbohydrate Model --- //
+
1335 float ground_clipping_height = -99999;
1336
-
1337 void accumulateShootPhotosynthesis();
+
1337 void validateShootTypes( ShootParameters &shoot_parameters ) const;
1338
-
1339 void subtractShootMaintenanceCarbon(float dt );
-
1340 void subtractShootGrowthCarbon();
-
1341
-
1342 void checkCarbonPool_abortbuds();
-
1343
-
1344 // --- Plant Library --- //
-
1345
-
1346 void initializeAlmondTreeShoots();
-
1347
-
1348 uint buildAlmondTree( const helios::vec3 &base_position, float age );
-
1349
-
1350 void initializeAsparagusShoots();
-
1351
-
1352 uint buildAsparagusPlant( const helios::vec3 &base_position, float age );
-
1353
-
1354 void initializeBindweedShoots();
-
1355
-
1356 uint buildBindweedPlant( const helios::vec3 &base_position, float age );
-
1357
-
1358 void initializeBeanShoots();
+
1339 void parseStringShoot(const std::string &LString_shoot, uint plantID, int parentID, uint parent_node, const std::map<std::string, PhytomerParameters> &phytomer_parameters, ShootParameters &shoot_parameters);
+
1340
+
1341 void parseShootArgument(const std::string &shoot_argument, const std::map<std::string, PhytomerParameters> &phytomer_parameters, ShootParameters &shoot_parameters, AxisRotation &base_rotation, std::string &phytomer_label);
+
1342
+
1343 void parseInternodeArgument(const std::string &internode_argument, float &internode_radius, float &internode_length, PhytomerParameters &phytomer_parameters);
+
1344
+
1345 void parsePetioleArgument(const std::string& petiole_argument, PhytomerParameters &phytomer_parameters );
+
1346
+
1347 void parseLeafArgument(const std::string& leaf_argument, PhytomerParameters &phytomer_parameters );
+
1348
+
1349// void shiftDownstreamShoots(uint plantID, std::vector<std::shared_ptr<Shoot>> &shoot_tree, std::shared_ptr<Shoot> parent_shoot_ptr, const helios::vec3 &base_position );
+
1350
+
1351 void initializeDefaultShoots( const std::string &plant_label );
+
1352
+
1353 bool detectGroundCollision(uint objID);
+
1354
+
1355 bool detectGroundCollision(const std::vector<uint> &objID);
+
1356
+
1358 std::map<std::string,bool> output_object_data;
1359
-
1360 uint buildBeanPlant( const helios::vec3 &base_position, float age );
+
1360 // --- Carbohydrate Model --- //
1361
-
1362 void initializeCheeseweedShoots();
+
1362 void accumulateShootPhotosynthesis();
1363
-
1364 uint buildCheeseweedPlant( const helios::vec3 &base_position, float age );
-
1365
-
1366 void initializeCowpeaShoots();
-
1367
-
1368 uint buildCowpeaPlant( const helios::vec3 &base_position, float age );
-
1369
-
1370 void initializePuncturevineShoots();
-
1371
-
1372 uint buildPuncturevinePlant( const helios::vec3 &base_position, float age );
-
1373
-
1374 void initializeEasternRedbudShoots();
-
1375
-
1376 uint buildEasternRedbudPlant( const helios::vec3 &base_position, float age );
-
1377
-
1378 void initializeRomaineLettuceShoots();
-
1379
-
1380 uint buildRomaineLettucePlant( const helios::vec3 &base_position, float age );
-
1381
-
1382 void initializeSoybeanShoots();
-
1383
-
1384 uint buildSoybeanPlant( const helios::vec3 &base_position, float age );
-
1385
-
1386 void initializeSorghumShoots();
-
1387
-
1388 uint buildSorghumPlant( const helios::vec3 &base_position, float age );
-
1389
-
1390 void initializeStrawberryShoots();
-
1391
-
1392 uint buildStrawberryPlant( const helios::vec3 &base_position, float age );
-
1393
-
1394 void initializeSugarbeetShoots();
-
1395
-
1396 uint buildSugarbeetPlant( const helios::vec3 &base_position, float age );
-
1397
-
1398 void initializeTomatoShoots();
-
1399
-
1400 uint buildTomatoPlant( const helios::vec3 &base_position, float age );
-
1401
-
1402 void initializeWheatShoots();
-
1403
-
1404 uint buildWheatPlant( const helios::vec3 &base_position, float age );
-
1405
+
1364 void subtractShootMaintenanceCarbon(float dt );
+
1365 void subtractShootGrowthCarbon();
+
1366
+
1367 void checkCarbonPool_abortbuds();
+
1368
+
1369 // --- Plant Library --- //
+
1370
+
1371 void initializeAlmondTreeShoots();
+
1372
+
1373 uint buildAlmondTree( const helios::vec3 &base_position );
+
1374
+
1375 void initializeAppleTreeShoots();
+
1376
+
1377 uint buildAppleTree( const helios::vec3 &base_position );
+
1378
+
1379 void initializeAsparagusShoots();
+
1380
+
1381 uint buildAsparagusPlant( const helios::vec3 &base_position );
+
1382
+
1383 void initializeBindweedShoots();
+
1384
+
1385 uint buildBindweedPlant( const helios::vec3 &base_position );
+
1386
+
1387 void initializeBeanShoots();
+
1388
+
1389 uint buildBeanPlant( const helios::vec3 &base_position );
+
1390
+
1391 void initializeCheeseweedShoots();
+
1392
+
1393 uint buildCheeseweedPlant( const helios::vec3 &base_position );
+
1394
+
1395 void initializeCowpeaShoots();
+
1396
+
1397 uint buildCowpeaPlant( const helios::vec3 &base_position );
+
1398
+
1399 void initializeGrapevineVSPShoots();
+
1400
+
1401 uint buildGrapevineVSP( const helios::vec3 &base_position );
+
1402
+
1403 void initializeOliveTreeShoots();
+
1404
+
1405 uint buildOliveTree( const helios::vec3 &base_position );
1406
-
1407};
-
+
1407 void initializePistachioTreeShoots();
1408
-
1409#include "Assets.h"
+
1409 uint buildPistachioTree( const helios::vec3 &base_position );
1410
-
1411#endif //PLANT_ARCHITECTURE
+
1411 void initializePuncturevineShoots();
+
1412
+
1413 uint buildPuncturevinePlant( const helios::vec3 &base_position );
+
1414
+
1415 void initializeEasternRedbudShoots();
+
1416
+
1417 uint buildEasternRedbudPlant( const helios::vec3 &base_position );
+
1418
+
1419 void initializeRomaineLettuceShoots();
+
1420
+
1421 uint buildRomaineLettucePlant( const helios::vec3 &base_position );
+
1422
+
1423 void initializeSoybeanShoots();
+
1424
+
1425 uint buildSoybeanPlant( const helios::vec3 &base_position );
+
1426
+
1427 void initializeSorghumShoots();
+
1428
+
1429 uint buildSorghumPlant( const helios::vec3 &base_position );
+
1430
+
1431 void initializeStrawberryShoots();
+
1432
+
1433 uint buildStrawberryPlant( const helios::vec3 &base_position );
+
1434
+
1435 void initializeSugarbeetShoots();
+
1436
+
1437 uint buildSugarbeetPlant( const helios::vec3 &base_position );
+
1438
+
1439 void initializeTomatoShoots();
+
1440
+
1441 uint buildTomatoPlant( const helios::vec3 &base_position );
+
1442
+
1443 void initializeWheatShoots();
+
1444
+
1445 uint buildWheatPlant( const helios::vec3 &base_position );
+
1446
+
1447
+
1448};
+
+
1449
+
1450#include "Assets.h"
+
1451
+
1452#endif //PLANT_ARCHITECTURE
makeTubeFromCones
std::vector< uint > makeTubeFromCones(uint radial_subdivisions, const std::vector< helios::vec3 > &vertices, const std::vector< float > &radii, const std::vector< helios::RGBcolor > &colors, helios::Context *context_ptr)
Add geometry to the Context consisting of a series of Cone objects to form a tube-like shape.
- -
PlantArchitecture::addPlantInstance
uint addPlantInstance(const helios::vec3 &base_position, float current_age)
Create an instance of a plant.
Definition PlantArchitecture.cpp:2558
-
PlantArchitecture::addChildShoot
uint addChildShoot(uint plantID, int parent_shoot_ID, uint parent_node_index, uint current_node_number, const AxisRotation &shoot_base_rotation, float internode_radius, float internode_length_max, float internode_length_scale_factor_fraction, float leaf_scale_factor_fraction, float radius_taper, const std::string &shoot_type_label, uint petiole_index=0)
Manually add a child shoot at the axillary bud of a phytomer.
Definition PlantArchitecture.cpp:1943
-
PlantArchitecture::appendPhytomerToShoot
int appendPhytomerToShoot(uint plantID, uint shootID, const PhytomerParameters &phytomer_parameters, float internode_radius, float internode_length_max, float internode_length_scale_factor_fraction, float leaf_scale_factor_fraction)
Add a new phytomer at the terminal bud of a shoot.
Definition PlantArchitecture.cpp:2025
-
PlantArchitecture::getCurrentShootParameters
std::map< std::string, ShootParameters > getCurrentShootParameters()
Get the shoot parameters structure for all shoot types in the current plant model.
Definition PlantLibrary.cpp:85
-
PlantArchitecture::getPlantFlowerObjectIDs
std::vector< uint > getPlantFlowerObjectIDs(uint plantID) const
Get object IDs for all inflorescence objects for a given plant.
Definition PlantArchitecture.cpp:2504
-
PlantArchitecture::updateCurrentShootParameters
void updateCurrentShootParameters(const std::string &shoot_type_label, const ShootParameters &params)
Update the parameters of a single shoot type in the current plant model.
Definition PlantLibrary.cpp:92
-
PlantArchitecture::appendShoot
uint appendShoot(uint plantID, int parent_shoot_ID, uint current_node_number, const AxisRotation &base_rotation, float internode_radius, float internode_length_max, float internode_length_scale_factor_fraction, float leaf_scale_factor_fraction, float radius_taper, const std::string &shoot_type_label)
Manually append a new shoot at the end of an existing shoot. This is used when the characteristics of...
Definition PlantArchitecture.cpp:1898
-
PlantArchitecture::enableGroundClipping
void enableGroundClipping(float ground_height=0.f)
Enable automatic removal of organs that are below the ground plane.
Definition PlantArchitecture.cpp:2105
-
PlantArchitecture::addBaseStemShoot
uint addBaseStemShoot(uint plantID, uint current_node_number, const AxisRotation &base_rotation, float internode_radius, float internode_length_max, float internode_length_scale_factor_fraction, float leaf_scale_factor_fraction, float radius_taper, const std::string &shoot_type_label)
Define the stem/trunk shoot (base of plant) to start a new plant. This requires a plant instance has ...
Definition PlantArchitecture.cpp:1866
-
PlantArchitecture::getAllPlantUUIDs
std::vector< uint > getAllPlantUUIDs(uint plantID) const
Get primitive UUIDs for all primitives in a given plant.
Definition PlantArchitecture.cpp:2416
-
PlantArchitecture::getPlantInternodeObjectIDs
std::vector< uint > getPlantInternodeObjectIDs(uint plantID) const
Get object IDs for all internode (Tube) objects for a given plant.
Definition PlantArchitecture.cpp:2420
-
PlantArchitecture::buildPlantCanopyFromLibrary
std::vector< uint > buildPlantCanopyFromLibrary(const helios::vec3 &canopy_center_position, const helios::vec2 &plant_spacing_xy, const helios::int2 &plant_count_xy, float age)
Build a canopy of regularly spaced plants based on the model currently loaded from the library.
Definition PlantArchitecture.cpp:217
+ +
PlantArchitecture::addPlantInstance
uint addPlantInstance(const helios::vec3 &base_position, float current_age)
Create an instance of a plant.
Definition PlantArchitecture.cpp:2568
+
PlantArchitecture::addChildShoot
uint addChildShoot(uint plantID, int parent_shoot_ID, uint parent_node_index, uint current_node_number, const AxisRotation &shoot_base_rotation, float internode_radius, float internode_length_max, float internode_length_scale_factor_fraction, float leaf_scale_factor_fraction, float radius_taper, const std::string &shoot_type_label, uint petiole_index=0)
Manually add a child shoot at the axillary bud of a phytomer.
Definition PlantArchitecture.cpp:1976
+
PlantArchitecture::appendPhytomerToShoot
int appendPhytomerToShoot(uint plantID, uint shootID, const PhytomerParameters &phytomer_parameters, float internode_radius, float internode_length_max, float internode_length_scale_factor_fraction, float leaf_scale_factor_fraction)
Add a new phytomer at the terminal bud of a shoot.
Definition PlantArchitecture.cpp:2058
+
PlantArchitecture::getCurrentShootParameters
std::map< std::string, ShootParameters > getCurrentShootParameters()
Get the shoot parameters structure for all shoot types in the current plant model.
Definition PlantLibrary.cpp:93
+
PlantArchitecture::getPlantFlowerObjectIDs
std::vector< uint > getPlantFlowerObjectIDs(uint plantID) const
Get object IDs for all inflorescence objects for a given plant.
Definition PlantArchitecture.cpp:2514
+
PlantArchitecture::updateCurrentShootParameters
void updateCurrentShootParameters(const std::string &shoot_type_label, const ShootParameters &params)
Update the parameters of a single shoot type in the current plant model.
Definition PlantLibrary.cpp:100
+
PlantArchitecture::appendShoot
uint appendShoot(uint plantID, int parent_shoot_ID, uint current_node_number, const AxisRotation &base_rotation, float internode_radius, float internode_length_max, float internode_length_scale_factor_fraction, float leaf_scale_factor_fraction, float radius_taper, const std::string &shoot_type_label)
Manually append a new shoot at the end of an existing shoot. This is used when the characteristics of...
Definition PlantArchitecture.cpp:1931
+
PlantArchitecture::enableGroundClipping
void enableGroundClipping(float ground_height=0.f)
Enable automatic removal of organs that are below the ground plane.
Definition PlantArchitecture.cpp:2133
+
PlantArchitecture::addBaseStemShoot
uint addBaseStemShoot(uint plantID, uint current_node_number, const AxisRotation &base_rotation, float internode_radius, float internode_length_max, float internode_length_scale_factor_fraction, float leaf_scale_factor_fraction, float radius_taper, const std::string &shoot_type_label)
Define the stem/trunk shoot (base of plant) to start a new plant. This requires a plant instance has ...
Definition PlantArchitecture.cpp:1899
+
PlantArchitecture::getAllPlantUUIDs
std::vector< uint > getAllPlantUUIDs(uint plantID) const
Get primitive UUIDs for all primitives in a given plant.
Definition PlantArchitecture.cpp:2426
+
PlantArchitecture::setPlantPhenologicalThresholds
void setPlantPhenologicalThresholds(uint plantID, float time_to_dormancy_break, float time_to_flower_initiation, float time_to_flower_opening, float time_to_fruit_set, float time_to_fruit_maturity, float time_to_senescence, bool is_evergreen=false)
Specify the threshold values for plant phenological stages.
Definition PlantArchitecture.cpp:2657
+
PlantArchitecture::getPlantInternodeObjectIDs
std::vector< uint > getPlantInternodeObjectIDs(uint plantID) const
Get object IDs for all internode (Tube) objects for a given plant.
Definition PlantArchitecture.cpp:2430
+
PlantArchitecture::buildPlantCanopyFromLibrary
std::vector< uint > buildPlantCanopyFromLibrary(const helios::vec3 &canopy_center_position, const helios::vec2 &plant_spacing_xy, const helios::int2 &plant_count_xy, float age)
Build a canopy of regularly spaced plants based on the model currently loaded from the library.
Definition PlantArchitecture.cpp:216
PlantArchitecture::selfTest
static int selfTest()
Unit test routines.
Definition selfTest.cpp:21
-
PlantArchitecture::disablePeduncleContextBuild
void disablePeduncleContextBuild()
Do not build peduncle primitive geometry in the Context.
Definition PlantArchitecture.cpp:2101
-
PlantArchitecture::deletePlantInstance
void deletePlantInstance(uint plantID)
Delete an existing plant instance.
Definition PlantArchitecture.cpp:2627
-
PlantArchitecture::enableEpicormicChildShoots
void enableEpicormicChildShoots(uint plantID, const std::string &epicormic_shoot_type_label, float epicormic_probability_perlength_perday)
Enable shoot type to produce epicormic child shoots (water sprouts)
Definition PlantArchitecture.cpp:2079
-
PlantArchitecture::defineShootType
void defineShootType(const std::string &shoot_type_label, const ShootParameters &shoot_params)
Define a new shoot type based on a set of ShootParameters.
Definition PlantArchitecture.cpp:236
-
PlantArchitecture::getPlantFruitObjectIDs
std::vector< uint > getPlantFruitObjectIDs(uint plantID) const
Get object IDs for all fruit objects for a given plant.
Definition PlantArchitecture.cpp:2531
-
PlantArchitecture::disablePetioleContextBuild
void disablePetioleContextBuild()
Do not build petiole primitive geometry in the Context.
Definition PlantArchitecture.cpp:2097
+
PlantArchitecture::disablePeduncleContextBuild
void disablePeduncleContextBuild()
Do not build peduncle primitive geometry in the Context.
Definition PlantArchitecture.cpp:2129
+
PlantArchitecture::deletePlantInstance
void deletePlantInstance(uint plantID)
Delete an existing plant instance.
Definition PlantArchitecture.cpp:2637
+
PlantArchitecture::enableEpicormicChildShoots
void enableEpicormicChildShoots(uint plantID, const std::string &epicormic_shoot_type_label, float epicormic_probability_perlength_perday)
Enable shoot type to produce epicormic child shoots (water sprouts)
Definition PlantArchitecture.cpp:2107
+
PlantArchitecture::defineShootType
void defineShootType(const std::string &shoot_type_label, const ShootParameters &shoot_params)
Define a new shoot type based on a set of ShootParameters.
Definition PlantArchitecture.cpp:235
+
PlantArchitecture::getPlantFruitObjectIDs
std::vector< uint > getPlantFruitObjectIDs(uint plantID) const
Get object IDs for all fruit objects for a given plant.
Definition PlantArchitecture.cpp:2541
+
PlantArchitecture::disablePetioleContextBuild
void disablePetioleContextBuild()
Do not build petiole primitive geometry in the Context.
Definition PlantArchitecture.cpp:2125
PlantArchitecture::PlantArchitecture
PlantArchitecture(helios::Context *context_ptr)
Main architectural model class constructor.
Definition PlantArchitecture.cpp:87
PlantArchitecture::buildPlantInstanceFromLibrary
uint buildPlantInstanceFromLibrary(const helios::vec3 &base_position, float age)
Build a plant instance based on the model currently loaded from the library.
Definition PlantLibrary.cpp:27
-
PlantArchitecture::optionalOutputObjectData
void optionalOutputObjectData(const std::string &object_data_label)
Add optional output object data values to the Context.
Definition PlantArchitecture.cpp:3088
-
PlantArchitecture::duplicatePlantInstance
uint duplicatePlantInstance(uint plantID, const helios::vec3 &base_position, const AxisRotation &base_rotation, float current_age)
Duplicate an existing plant instance and specify its base position and age.
Definition PlantArchitecture.cpp:2574
-
PlantArchitecture::getAllPlantObjectIDs
std::vector< uint > getAllPlantObjectIDs(uint plantID) const
Get object IDs for all organs objects for a given plant.
Definition PlantArchitecture.cpp:2386
+
PlantArchitecture::optionalOutputObjectData
void optionalOutputObjectData(const std::string &object_data_label)
Add optional output object data values to the Context.
Definition PlantArchitecture.cpp:3108
+
PlantArchitecture::duplicatePlantInstance
uint duplicatePlantInstance(uint plantID, const helios::vec3 &base_position, const AxisRotation &base_rotation, float current_age)
Duplicate an existing plant instance and specify its base position and age.
Definition PlantArchitecture.cpp:2584
+
PlantArchitecture::getAllPlantObjectIDs
std::vector< uint > getAllPlantObjectIDs(uint plantID) const
Get object IDs for all organs objects for a given plant.
Definition PlantArchitecture.cpp:2396
PlantArchitecture::loadPlantModelFromLibrary
void loadPlantModelFromLibrary(const std::string &plant_label)
Load an existing plant model from the library.
Definition PlantLibrary.cpp:20
-
PlantArchitecture::addEpicormicShoot
uint addEpicormicShoot(uint plantID, int parent_shoot_ID, float parent_position_fraction, uint current_node_number, float zenith_perturbation_degrees, float internode_radius, float internode_length_max, float internode_length_scale_factor_fraction, float leaf_scale_factor_fraction, float radius_taper, const std::string &shoot_type_label)
Manually add a child epicormic shoot (water sprout) at an arbitrary position along the shoot.
Definition PlantArchitecture.cpp:1987
-
PlantArchitecture::setPlantPhenologicalThresholds
void setPlantPhenologicalThresholds(uint plantID, float time_to_leaf_out, float time_to_flower_initiation, float time_to_flower_opening, float time_to_fruit_set, float time_to_fruit_maturity, float time_to_senescence)
Specify the threshold values for plant phenological stages.
Definition PlantArchitecture.cpp:2647
-
PlantArchitecture::getPlantPetioleObjectIDs
std::vector< uint > getPlantPetioleObjectIDs(uint plantID) const
Get object IDs for all petiole (Tube) objects for a given plant.
Definition PlantArchitecture.cpp:2438
-
PlantArchitecture::disableInternodeContextBuild
void disableInternodeContextBuild()
Do not build internode primitive geometry in the Context.
Definition PlantArchitecture.cpp:2093
-
PlantArchitecture::getPlantPeduncleObjectIDs
std::vector< uint > getPlantPeduncleObjectIDs(uint plantID) const
Get object IDs for all peduncle (Tube) objects for a given plant.
Definition PlantArchitecture.cpp:2480
-
PlantArchitecture::advanceTime
void advanceTime(float dt)
Advance plant growth by a specified time interval for all plants.
Definition PlantArchitecture.cpp:2671
-
PlantArchitecture::getPlantLeafObjectIDs
std::vector< uint > getPlantLeafObjectIDs(uint plantID) const
Get object IDs for all leaf objects for a given plant.
Definition PlantArchitecture.cpp:2459
+
PlantArchitecture::addEpicormicShoot
uint addEpicormicShoot(uint plantID, int parent_shoot_ID, float parent_position_fraction, uint current_node_number, float zenith_perturbation_degrees, float internode_radius, float internode_length_max, float internode_length_scale_factor_fraction, float leaf_scale_factor_fraction, float radius_taper, const std::string &shoot_type_label)
Manually add a child epicormic shoot (water sprout) at an arbitrary position along the shoot.
Definition PlantArchitecture.cpp:2020
+
PlantArchitecture::sumPlantLeafArea
float sumPlantLeafArea(uint plantID) const
Sum the one-sided leaf area of all leaves in the plant.
Definition PlantArchitecture.cpp:2263
+
PlantArchitecture::getPlantPetioleObjectIDs
std::vector< uint > getPlantPetioleObjectIDs(uint plantID) const
Get object IDs for all petiole (Tube) objects for a given plant.
Definition PlantArchitecture.cpp:2448
+
PlantArchitecture::disableInternodeContextBuild
void disableInternodeContextBuild()
Do not build internode primitive geometry in the Context.
Definition PlantArchitecture.cpp:2121
+
PlantArchitecture::getPlantPeduncleObjectIDs
std::vector< uint > getPlantPeduncleObjectIDs(uint plantID) const
Get object IDs for all peduncle (Tube) objects for a given plant.
Definition PlantArchitecture.cpp:2490
+
PlantArchitecture::advanceTime
void advanceTime(float dt)
Advance plant growth by a specified time interval for all plants.
Definition PlantArchitecture.cpp:2682
+
PlantArchitecture::getPlantLeafObjectIDs
std::vector< uint > getPlantLeafObjectIDs(uint plantID) const
Get object IDs for all leaf objects for a given plant.
Definition PlantArchitecture.cpp:2469
helios::Context
Stores the state associated with simulation.
Definition Context.h:1882
helios::mean
float mean(const std::vector< float > &vect)
Mean value of a vector of floats.
Definition global.cpp:1002
- - - -
Phytomer::setInternodeMaxLength
void setInternodeMaxLength(float internode_length_max_new)
Set the fully-elongated (maximum) internode length.
Definition PlantArchitecture.cpp:1575
-
Phytomer::petiole_vertices
std::vector< std::vector< helios::vec3 > > petiole_vertices
Coordinates of internode tube segments. Index is tube segment within internode.
Definition PlantArchitecture.h:730
-
Phytomer::setInternodeMaxRadius
void setInternodeMaxRadius(float internode_radius_max_new)
Set the maximum radius of the internode.
Definition PlantArchitecture.cpp:1580
-
Phytomer::time_since_dormancy
float time_since_dormancy
Time since the phytomer last broke dormancy (=0 if currently dormant)
Definition PlantArchitecture.h:760
-
Phytomer::shoot_index
helios::int3 shoot_index
.x = index of phytomer along shoot, .y = current number of phytomers on parent shoot,...
Definition PlantArchitecture.h:751
-
Phytomer::setLeafScaleFraction
void setLeafScaleFraction(float leaf_scale_factor_fraction)
Set the leaf scale as a fraction of its total fully-elongated scale factor. Value is uniformly applie...
Definition PlantArchitecture.cpp:1586
-
Phytomer::age
float age
Time since the phytomer was created.
Definition PlantArchitecture.h:758
-
Phytomer::setLeafPrototypeScale
void setLeafPrototypeScale(float leaf_prototype_scale)
Set the fully-elongated (maximum) leaf prototype scale. Value is uniformly applied for all leaves/lea...
Definition PlantArchitecture.cpp:1656
-
Phytomer::scaleInternodeMaxLength
void scaleInternodeMaxLength(float scale_factor)
Scale the fully-elongated (maximum) internode length as a fraction of its current fully-elongated len...
Definition PlantArchitecture.cpp:1564
- + + + +
Phytomer::setInternodeMaxLength
void setInternodeMaxLength(float internode_length_max_new)
Set the fully-elongated (maximum) internode length.
Definition PlantArchitecture.cpp:1597
+
Phytomer::petiole_vertices
std::vector< std::vector< helios::vec3 > > petiole_vertices
Coordinates of internode tube segments. Index is tube segment within internode.
Definition PlantArchitecture.h:746
+
Phytomer::setInternodeMaxRadius
void setInternodeMaxRadius(float internode_radius_max_new)
Set the maximum radius of the internode.
Definition PlantArchitecture.cpp:1602
+
Phytomer::time_since_dormancy
float time_since_dormancy
Time since the phytomer last broke dormancy (=0 if currently dormant)
Definition PlantArchitecture.h:776
+
Phytomer::shoot_index
helios::int3 shoot_index
.x = index of phytomer along shoot, .y = current number of phytomers on parent shoot,...
Definition PlantArchitecture.h:767
+
Phytomer::setLeafScaleFraction
void setLeafScaleFraction(float leaf_scale_factor_fraction)
Set the leaf scale as a fraction of its total fully-elongated scale factor. Value is uniformly applie...
Definition PlantArchitecture.cpp:1608
+
Phytomer::age
float age
Time since the phytomer was created.
Definition PlantArchitecture.h:774
+
Phytomer::setLeafPrototypeScale
void setLeafPrototypeScale(float leaf_prototype_scale)
Set the fully-elongated (maximum) leaf prototype scale. Value is uniformly applied for all leaves/lea...
Definition PlantArchitecture.cpp:1678
+
Phytomer::scaleInternodeMaxLength
void scaleInternodeMaxLength(float scale_factor)
Scale the fully-elongated (maximum) internode length as a fraction of its current fully-elongated len...
Definition PlantArchitecture.cpp:1586
+
PhytomerParameters::PhytomerParameters
PhytomerParameters()
Default constructor - does not set random number generator.
Definition PlantArchitecture.cpp:101
-
PhytomerParameters::phytomer_callback_function
void(* phytomer_callback_function)(std::shared_ptr< Phytomer > phytomer_ptr)
Definition PlantArchitecture.h:489
-
PhytomerParameters::phytomer_creation_function
void(* phytomer_creation_function)(std::shared_ptr< Phytomer > phytomer_ptr, uint shoot_node_index, uint parent_shoot_node_index, uint shoot_max_nodes, float plant_age)
Definition PlantArchitecture.h:483
- +
PhytomerParameters::phytomer_callback_function
void(* phytomer_callback_function)(std::shared_ptr< Phytomer > phytomer_ptr)
Definition PlantArchitecture.h:502
+
PhytomerParameters::phytomer_creation_function
void(* phytomer_creation_function)(std::shared_ptr< Phytomer > phytomer_ptr, uint shoot_node_index, uint parent_shoot_node_index, uint shoot_max_nodes, float plant_age)
Definition PlantArchitecture.h:496
+
RandomParameter_float
Definition PlantArchitecture.h:27
RandomParameter_float::RandomParameter_float
RandomParameter_float()
Constructor initializing to a constant default value of 0.
Definition PlantArchitecture.h:34
RandomParameter_float::RandomParameter_float
RandomParameter_float(std::minstd_rand0 *rand_generator)
Constructor initializing the random number generator.
Definition PlantArchitecture.h:56
RandomParameter_float::RandomParameter_float
RandomParameter_float(float val)
Constructor initializing to a constant value.
Definition PlantArchitecture.h:45
-
RandomParameter_int
Definition PlantArchitecture.h:140
- -
Shoot::updateShootNodes
void updateShootNodes(bool update_context_geometry=true)
Recalculate and apply the shoot's origin position and shift all downstream shoots.
Definition PlantArchitecture.cpp:661
-
Shoot::sampleChildShootType
bool sampleChildShootType(std::string &child_shoot_type_label) const
Randomly sample the type of a child shoot based on the probabilities defined in the shoot parameters.
Definition PlantArchitecture.cpp:1778
-
Shoot::appendPhytomer
int appendPhytomer(float internode_radius, float internode_length_max, float internode_length_scale_factor_fraction, float leaf_scale_factor_fraction)
Append a phytomer at the shoot apex.
Definition PlantArchitecture.cpp:408
-
Shoot::sampleEpicormicShoot
uint sampleEpicormicShoot(float dt, std::vector< float > &epicormic_positions_fraction)
Randomly sample whether the shoot should produce an epicormic shoot (water sprout) over timestep.
Definition PlantArchitecture.cpp:1821
- -
ShootParameters::ShootParameters
ShootParameters()
Default constructor - does not set random number generator.
Definition PlantArchitecture.cpp:157
- -
helios::RGBcolor
R-G-B color vector.
Definition helios_vector_types.h:841
+
RandomParameter_int
Definition PlantArchitecture.h:143
+ +
Shoot::updateShootNodes
void updateShootNodes(bool update_context_geometry=true)
Recalculate and apply the shoot's origin position and shift all downstream shoots.
Definition PlantArchitecture.cpp:679
+
Shoot::sampleChildShootType
bool sampleChildShootType(std::string &child_shoot_type_label) const
Randomly sample the type of a child shoot based on the probabilities defined in the shoot parameters.
Definition PlantArchitecture.cpp:1812
+
Shoot::appendPhytomer
int appendPhytomer(float internode_radius, float internode_length_max, float internode_length_scale_factor_fraction, float leaf_scale_factor_fraction)
Append a phytomer at the shoot apex.
Definition PlantArchitecture.cpp:407
+
Shoot::sampleEpicormicShoot
uint sampleEpicormicShoot(float dt, std::vector< float > &epicormic_positions_fraction)
Randomly sample whether the shoot should produce an epicormic shoot (water sprout) over timestep.
Definition PlantArchitecture.cpp:1854
+ +
ShootParameters::ShootParameters
ShootParameters()
Default constructor - does not set random number generator.
Definition PlantArchitecture.cpp:156
+ +
helios::RGBcolor
R-G-B color vector.
Definition helios_vector_types.h:844
helios::int2
Vector of two elements of type 'int'.
Definition helios_vector_types.h:44
helios::int3
Vector of three elements of type 'int'.
Definition helios_vector_types.h:146
helios::vec2
Vector of two elements of type 'float'.
Definition helios_vector_types.h:346
-
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:502
+
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:503
diff --git a/doc/html/_plant_architecture_doc.html b/doc/html/_plant_architecture_doc.html index 9f8a6a296..dd907f9a4 100644 --- a/doc/html/_plant_architecture_doc.html +++ b/doc/html/_plant_architecture_doc.html @@ -38,7 +38,7 @@
@@ -225,9 +225,14 @@ -

Known Issues

+
+ +
+

Known Issues

    -
  • Growing the plant over time is pretty slow. Nothing has been done yet to optimize efficiency. It may be helpful to lower the subdivision count on leaves and stems/branches.
    • +
  • This plug-in is under active development and changes much more frequently than other plug-ins, and backward compatability is not necessarily maintained. Please check the release notes for each version to see what has changed and how to modify your code to accommodate changes that break backward compatability.
    • +
  • The phyllochron and phenological threshold values (e.g., time to flowering) in the plant library are currently arbitrary and not necessarily reflective of reality. This will be updated in a future release.
    • +
  • Computational efficiency has been improved substantially, but some models may still be a bit slow to generate. This will be improved in the future. For now, you can decrease subdivision counts, or prevent the plant from flowering/fruiting (these take a lot of primitives and computational power).

Data Structures

struct  BaseCanopyParameters
 Base struct class for Canopy parameters. More...
 
struct  HomogeneousCanopyParameters
 Parameters defining the homogeneous canopy. More...
 
struct  ConicalCrownsCanopyParameters
 Parameters defining the canopy with conical crowns. More...
 
struct  BaseGrapeVineParameters
 
struct  VSPGrapevineParameters
 Parameters defining the grapevine canopy with vertical shoot positioned (VSP) trellis. More...
 
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@@ -413,24 +418,22 @@

- + - + - - - - - + - + - + - + + +
— inflorescence —
flowers_per_rachis RandomParameter_int - Number of flowers per peduncle (rachis).
flowers_per_peduncle RandomParameter_int - Number of flowers per peduncle (rachis).
flower_offset RandomParameter_float - If peduncle has multiple flowers/fruit (flowers_per_rachis>1), this sets the spacing between adjacent flowers/fruit along the peduncle as a fraction of the peduncle length.
flower_offset RandomParameter_float - If peduncle has multiple flowers/fruit (flowers_per_peduncle>1), this sets the spacing between adjacent flowers/fruit along the peduncle as a fraction of the peduncle length.
flower_arrangement_pattern std::string - Pattern of flower arrangement on the peduncle (rachis): one of "alternate" or "opposite". Only used if flowers_per_rachis > 1.
pitch RandomParameter_float degrees Angle of the fruit axis with respect to its parent peduncle axis.
roll RandomParameter_float degrees Rotation angle of the fruit about it's own axis (x-axis of fruit prototype).
flower_prototype_scale RandomParameter_float - Scaling factor applied to the flower prototype. Usually the prototype has unit length, so this sets the physical length of the flower.
roll RandomParameter_float degrees Rotation angle of the fruit about it's own axis (x-axis of fruit prototype).
flower_prototype_function function pointer - Pointer to a function that generates the flower prototype model. Function takes arguments ( helios::Context*, uint subdivisions, bool flower_is_open ) and returns an object ID (uint).
flower_prototype_scale RandomParameter_float - Scaling factor applied to the flower prototype. Usually the prototype has unit length, so this sets the physical length of the flower.
fruit_prototype_scale RandomParameter_float - Scaling factor applied to the fruit prototype. Usually the prototype has unit length, so this sets the physical length of the fruit.
flower_prototype_function function pointer - Pointer to a function that generates the flower prototype model. Function takes arguments ( helios::Context*, uint subdivisions, bool flower_is_open ) and returns an object ID (uint).
fruit_prototype_function function pointer - Pointer to a function that generates the fruit prototype model. Function takes arguments ( helios::Context*, uint subdivisions, float time_since_fruit_set ) and returns an object ID (uint).
fruit_prototype_scale RandomParameter_float - Scaling factor applied to the fruit prototype. Usually the prototype has unit length, so this sets the physical length of the fruit.
fruit_prototype_function function pointer - Pointer to a function that generates the fruit prototype model. Function takes arguments ( helios::Context*, uint subdivisions, float time_since_fruit_set ) and returns an object ID (uint).
unique_prototypes uint - Number of unique flower/fruit prototypes to generate per shoot type. If = 0, every leaf will be unique. Increasing this value gives more variability across the plant, but it will take longer to initially generate the plant model.

The phytomer parameters are stored in a data structure (struct) called PhytomerParameters. This structure has sub-member structs for each of internode, leaf, petiole, and inflorescence, each containing the parameters for that element type as designated in the table above. Below is an example of how to set a few of the parameters:

@@ -441,7 +444,7 @@

phytomer.leaf.pitch = 0.1;
phytomer.leaf.prototype_scale = 0.1;
phytomer.peduncle.length = 0.1;
- +

The figure below provides some examples of how various shoot growth patterns (e.g., alternate, opposite) can be created by varying the model parameters.

@@ -470,7 +473,7 @@

return context_ptr->addPolymeshObject( UUIDs );
}
helios::Context::loadOBJ
std::vector< uint > loadOBJ(const char *filename, bool silent=false)
Load geometry contained in a Wavefront OBJ file (.obj). Model will be placed at the origin without an...
Definition Context_fileIO.cpp:3734
-
helios::Context::addPolymeshObject
uint addPolymeshObject(const std::vector< uint > &UUIDs)
Add new Polymesh Compound Object.
Definition Context.cpp:5276
+
helios::Context::addPolymeshObject
uint addPolymeshObject(const std::vector< uint > &UUIDs)
Add new Polymesh Compound Object.
Definition Context.cpp:5343

A generic leaf prototype function is given in the file Assets.cpp, which creates a leaf from a mesh of triangles, and has adjustable parameters to add leaf curvature, folding, and waves. The advantage of this approach is that each leaf will have random variation, since the leaf is generated procedurally. The disadvantage is that it may not look as detailed as a leaf created outside Helios (e.g., in Blender) that has detailed sculpting of leaf texture, for example.

uint someLeafPrototype( helios::Context* context_ptr, uint subdivisions, int compound_leaf_index, uint shoot_node_index, uint shoot_max_nodes ){
@@ -504,7 +507,7 @@

Inflorescence

The term 'inflorescence' used to denote the peduncle and flowers together. The peduncle is the supporting structure that connects the internode to the flowers. In this model, we do not distinguish between the peduncle (part between the internode and first flower) and the rachis (part that connects adjacent flowers when there are multiple flowers per inflorescence) - this is all considered the peduncle for simplicity.

-

If flowers_per_rachis is greater than 1, the flowers are arranged along the peduncle in a pattern specified by the parameter flower_arrangement_pattern (the two options are "alternate" and "opposite"). The flower_offset parameter specifies the spacing between adjacent flowers along the peduncle.

+

If flowers_per_peduncle is greater than 1, the flowers are arranged along the peduncle in a pattern specified by the parameter flower_arrangement_pattern (the two options are "alternate" and "opposite"). The flower_offset parameter specifies the spacing between adjacent flowers along the peduncle.

The sketch below shows an example of one parameter set for the infloresence.

@@ -555,7 +558,7 @@

elongation_rate RandomParameter_float 0.2 meter/meter/day Relative rate of elongation of the internode of the shoot. Units are meters of elongation per meter of maximum internode length per day. -girth_growth_rate RandomParameter_float 0.0001 meter/day Rate of increase of the internode radius of the shoot. Units are meters of increase in internode radius per day. +girth_area_factor RandomParameter_float 0 cm^2 branch area / m^2 downstream leaf area Cross-sectional area of internode (girth), determined by the amount of downstream leaf area. The girth will only increase and does not decrease if leaves are lost. Set this factor to 0 to prevent girth scaling. vegetative_bud_break_time RandomParameter_float 5 days Amount of time after the bud is created or after dormancy is broken for the vegetative bud to break. @@ -672,7 +675,7 @@

return 0;
}
- +

Modifying Parameters of a Plant from the Library

Building a plant from the library with modified parameters is similar to above, except that the parameters are modified before calling the PlantArchitecture::buildPlantInstanceFromLibrary() method. After calling PlantArchitecture::loadPlantModelFromLibrary(), the parameters can be queried (at the shoot level), modified, and then set.

@@ -686,7 +689,7 @@

plantarchitecture.updateCurrentShootParameters( "trunk", shoot_parameters );
plantarchitecture.buildPlantInstanceFromLibrary( nullorigin, 0 );
- +

Below is an example of modifying the parameters for all shoot types:

plantarchitecture.loadPlantModelFromLibrary( "almond" );
@@ -701,7 +704,7 @@

plantarchitecture.buildPlantInstanceFromLibrary( nullorigin, 0 );

Modifying Phenological Threshold Parameters

-

Thresholds determining phenological transitions are set using the PlantArchitecture::setPlantPhenologicalThresholds() method. The thresholds are in arbitrary time units, which should be consistent with the timestep units and units of other parameters. The table below describes each of the phenological parameters. Setting any parameter to a negative value will skip that phenological stage.

+

Thresholds determining phenological transitions are set using the PlantArchitecture::setPlantPhenologicalThresholds() method. The thresholds are in arbitrary time units, which should be consistent with the timestep units and units of other parameters. The table below describes each of the phenological parameters. Setting any parameter to a negative value will skip that phenological stage.

diff --git a/doc/html/_plant_library_8cpp.html b/doc/html/_plant_library_8cpp.html index a9a53b954..2848ff711 100644 --- a/doc/html/_plant_library_8cpp.html +++ b/doc/html/_plant_library_8cpp.html @@ -38,7 +38,7 @@ diff --git a/doc/html/_plant_library_8cpp_source.html b/doc/html/_plant_library_8cpp_source.html index 180e11d85..794932df3 100644 --- a/doc/html/_plant_library_8cpp_source.html +++ b/doc/html/_plant_library_8cpp_source.html @@ -38,7 +38,7 @@ @@ -127,1862 +127,2440 @@
32
33 uint plantID = 0;
34 if( current_plant_model == "almond" ) {
-
35 plantID = buildAlmondTree(base_position, age);
-
36 }else if( current_plant_model == "asparagus" ) {
-
37 plantID = buildAsparagusPlant(base_position, age);
-
38 }else if( current_plant_model == "bindweed" ) {
-
39 plantID = buildBindweedPlant(base_position, age);
-
40 }else if( current_plant_model == "bean" ) {
-
41 plantID = buildBeanPlant(base_position, age);
-
42 }else if( current_plant_model == "cheeseweed" ) {
-
43 plantID = buildCheeseweedPlant(base_position, age);
-
44 }else if( current_plant_model == "cowpea" ) {
-
45 plantID = buildCowpeaPlant(base_position, age);
-
46 }else if( current_plant_model == "puncturevine" ) {
-
47 plantID = buildPuncturevinePlant(base_position, age);
-
48 }else if( current_plant_model == "easternredbud" ) {
-
49 plantID = buildEasternRedbudPlant(base_position, age);
-
50 }else if( current_plant_model == "romainelettuce" ) {
-
51 plantID = buildRomaineLettucePlant(base_position, age);
-
52 }else if( current_plant_model == "sorghum" ) {
-
53 plantID = buildSorghumPlant(base_position, age);
-
54 }else if( current_plant_model == "soybean" ) {
-
55 plantID = buildSoybeanPlant(base_position, age);
-
56 }else if( current_plant_model == "strawberry" ) {
-
57 plantID = buildStrawberryPlant(base_position, age);
-
58 }else if( current_plant_model == "sugarbeet" ) {
-
59 plantID = buildSugarbeetPlant(base_position, age);
-
60 }else if( current_plant_model == "tomato" ) {
-
61 plantID = buildTomatoPlant(base_position, age);
-
62 }else if( current_plant_model == "wheat" ) {
-
63 plantID = buildWheatPlant(base_position, age);
-
64 }else{
-
65 assert(true); //shouldn't be here
-
66 }
-
67
-
68 if( age>0 ){
-
69 advanceTime( plantID, age);
-
70 }
-
71
-
72 return plantID;
-
73
-
74}
- +
35 plantID = buildAlmondTree(base_position);
+
36 }else if( current_plant_model == "apple" ) {
+
37 plantID = buildAppleTree(base_position);
+
38 }else if( current_plant_model == "asparagus" ) {
+
39 plantID = buildAsparagusPlant(base_position);
+
40 }else if( current_plant_model == "bindweed" ) {
+
41 plantID = buildBindweedPlant(base_position);
+
42 }else if( current_plant_model == "bean" ) {
+
43 plantID = buildBeanPlant(base_position);
+
44 }else if( current_plant_model == "cheeseweed" ) {
+
45 plantID = buildCheeseweedPlant(base_position);
+
46 }else if( current_plant_model == "cowpea" ) {
+
47 plantID = buildCowpeaPlant(base_position);
+
48 }else if( current_plant_model == "grapevine_VSP" ) {
+
49 plantID = buildGrapevineVSP(base_position);
+
50 }else if( current_plant_model == "olive" ) {
+
51 plantID = buildOliveTree(base_position);
+
52 }else if( current_plant_model == "pistachio" ) {
+
53 plantID = buildPistachioTree(base_position);
+
54 }else if( current_plant_model == "puncturevine" ) {
+
55 plantID = buildPuncturevinePlant(base_position);
+
56 }else if( current_plant_model == "easternredbud" ) {
+
57 plantID = buildEasternRedbudPlant(base_position);
+
58 }else if( current_plant_model == "romainelettuce" ) {
+
59 plantID = buildRomaineLettucePlant(base_position);
+
60 }else if( current_plant_model == "sorghum" ) {
+
61 plantID = buildSorghumPlant(base_position);
+
62 }else if( current_plant_model == "soybean" ) {
+
63 plantID = buildSoybeanPlant(base_position);
+
64 }else if( current_plant_model == "strawberry" ) {
+
65 plantID = buildStrawberryPlant(base_position);
+
66 }else if( current_plant_model == "sugarbeet" ) {
+
67 plantID = buildSugarbeetPlant(base_position);
+
68 }else if( current_plant_model == "tomato" ) {
+
69 plantID = buildTomatoPlant(base_position);
+
70 }else if( current_plant_model == "wheat" ) {
+
71 plantID = buildWheatPlant(base_position);
+
72 }else{
+
73 assert(true); //shouldn't be here
+
74 }
75
-
-
76ShootParameters PlantArchitecture::getCurrentShootParameters( const std::string &shoot_type_label ){
-
77
-
78 if( shoot_types.find(shoot_type_label) == shoot_types.end() ){
-
79 helios_runtime_error("ERROR (PlantArchitecture::getCurrentShootParameters): shoot type label of " + shoot_type_label + " does not exist in the current shoot parameters.");
-
80 }
+
76 if( age>0 ){
+
77 advanceTime( plantID, age);
+
78 }
+
79
+
80 return plantID;
81
-
82 return shoot_types.at(shoot_type_label);
-
83}
+
82}
-
84
-
-
85std::map<std::string, ShootParameters> PlantArchitecture::getCurrentShootParameters(){
-
86 if( shoot_types.empty() ){
-
87 std::cerr << "WARNING (PlantArchitecture::getCurrentShootParameters): No plant models have been loaded. You need to first load a plant model from the library (see loadPlantModelFromLibrary()) or manually add shoot parameters (see updateCurrentShootParameters())." << std::endl;
+
83
+
+
84ShootParameters PlantArchitecture::getCurrentShootParameters( const std::string &shoot_type_label ){
+
85
+
86 if( shoot_types.find(shoot_type_label) == shoot_types.end() ){
+
87 helios_runtime_error("ERROR (PlantArchitecture::getCurrentShootParameters): shoot type label of " + shoot_type_label + " does not exist in the current shoot parameters.");
88 }
-
89 return shoot_types;
-
90}
-
-
91
-
-
92void PlantArchitecture::updateCurrentShootParameters( const std::string &shoot_type_label, const ShootParameters &params ){
-
93 shoot_types[shoot_type_label] = params;
-
94}
+
89
+
90 return shoot_types.at(shoot_type_label);
+
91}
-
95
-
-
96void PlantArchitecture::updateCurrentShootParameters( const std::map<std::string, ShootParameters> &params ){
-
97 shoot_types = params;
+
92
+
+
93std::map<std::string, ShootParameters> PlantArchitecture::getCurrentShootParameters(){
+
94 if( shoot_types.empty() ){
+
95 std::cerr << "WARNING (PlantArchitecture::getCurrentShootParameters): No plant models have been loaded. You need to first load a plant model from the library (see loadPlantModelFromLibrary()) or manually add shoot parameters (see updateCurrentShootParameters())." << std::endl;
+
96 }
+
97 return shoot_types;
98}
99
-
100void PlantArchitecture::initializeDefaultShoots( const std::string &plant_label ){
-
101
-
102 if( plant_label == "almond" ) {
-
103 initializeAlmondTreeShoots();
-
104 }else if( plant_label == "asparagus" ) {
-
105 initializeAsparagusShoots();
-
106 }else if( plant_label == "bindweed" ) {
-
107 initializeBindweedShoots();
-
108 }else if( plant_label == "bean" ) {
-
109 initializeBeanShoots();
-
110 }else if( plant_label == "cheeseweed" ) {
-
111 initializeCheeseweedShoots();
-
112 }else if( plant_label == "cowpea" ) {
-
113 initializeCowpeaShoots();
-
114 }else if( plant_label == "puncturevine" ) {
-
115 initializePuncturevineShoots();
-
116 }else if( plant_label == "easternredbud" ) {
-
117 initializeEasternRedbudShoots();
-
118 }else if( plant_label == "romainelettuce" ) {
-
119 initializeRomaineLettuceShoots();
-
120 }else if( plant_label == "sorghum" ) {
-
121 initializeSorghumShoots();
-
122 }else if( plant_label == "soybean" ) {
-
123 initializeSoybeanShoots();
-
124 }else if( plant_label == "strawberry" ) {
-
125 initializeStrawberryShoots();
-
126 }else if( plant_label == "sugarbeet" ) {
-
127 initializeSugarbeetShoots();
-
128 }else if( plant_label == "tomato" ) {
-
129 initializeTomatoShoots();
-
130 }else if( plant_label == "wheat" ) {
-
131 initializeWheatShoots();
-
132 }else{
-
133 helios_runtime_error("ERROR (PlantArchitecture::loadPlantModelFromLibrary): plant label of " + plant_label + " does not exist in the library.");
-
134 }
-
135
-
136}
-
137
-
138void PlantArchitecture::initializeAlmondTreeShoots(){
-
139
-
140 // ---- Phytomer Parameters ---- //
-
141
-
142 PhytomerParameters phytomer_parameters_almond(context_ptr->getRandomGenerator());
-
143
-
144 phytomer_parameters_almond.internode.pitch = 0;
-
145 phytomer_parameters_almond.internode.phyllotactic_angle.uniformDistribution( 130, 145 );
-
146 phytomer_parameters_almond.internode.length_segments = 1;
-
147 phytomer_parameters_almond.internode.image_texture = "plugins/plantarchitecture/assets/textures/AlmondBark.jpg";
-
148 phytomer_parameters_almond.internode.max_floral_buds_per_petiole = 3;
-
149
-
150 phytomer_parameters_almond.petiole.petioles_per_internode = 1;
-
151 phytomer_parameters_almond.petiole.pitch = -50;
-
152 phytomer_parameters_almond.petiole.taper = 0.1;
-
153 phytomer_parameters_almond.petiole.curvature = 0;
-
154 phytomer_parameters_almond.petiole.length = 0.04;
-
155 phytomer_parameters_almond.petiole.radius = 0.0005;
-
156 phytomer_parameters_almond.petiole.length_segments = 1;
-
157 phytomer_parameters_almond.petiole.radial_subdivisions = 3;
-
158 phytomer_parameters_almond.petiole.color = make_RGBcolor(0.61,0.5,0.24);
+
+
100void PlantArchitecture::updateCurrentShootParameters( const std::string &shoot_type_label, const ShootParameters &params ){
+
101 shoot_types[shoot_type_label] = params;
+
102}
+
+
103
+
+
104void PlantArchitecture::updateCurrentShootParameters( const std::map<std::string, ShootParameters> &params ){
+
105 shoot_types = params;
+
106}
+
+
107
+
108void PlantArchitecture::initializeDefaultShoots( const std::string &plant_label ){
+
109
+
110 if( plant_label == "almond" ) {
+
111 initializeAlmondTreeShoots();
+
112 }else if( plant_label == "apple" ) {
+
113 initializeAppleTreeShoots();
+
114 }else if( plant_label == "asparagus" ) {
+
115 initializeAsparagusShoots();
+
116 }else if( plant_label == "bindweed" ) {
+
117 initializeBindweedShoots();
+
118 }else if( plant_label == "bean" ) {
+
119 initializeBeanShoots();
+
120 }else if( plant_label == "cheeseweed" ) {
+
121 initializeCheeseweedShoots();
+
122 }else if( plant_label == "cowpea" ) {
+
123 initializeCowpeaShoots();
+
124 }else if( plant_label == "grapevine_VSP" ) {
+
125 initializeGrapevineVSPShoots();
+
126 }else if( plant_label == "olive" ) {
+
127 initializeOliveTreeShoots();
+
128 }else if( plant_label == "pistachio" ) {
+
129 initializePistachioTreeShoots();
+
130 }else if( plant_label == "puncturevine" ) {
+
131 initializePuncturevineShoots();
+
132 }else if( plant_label == "easternredbud" ) {
+
133 initializeEasternRedbudShoots();
+
134 }else if( plant_label == "romainelettuce" ) {
+
135 initializeRomaineLettuceShoots();
+
136 }else if( plant_label == "sorghum" ) {
+
137 initializeSorghumShoots();
+
138 }else if( plant_label == "soybean" ) {
+
139 initializeSoybeanShoots();
+
140 }else if( plant_label == "strawberry" ) {
+
141 initializeStrawberryShoots();
+
142 }else if( plant_label == "sugarbeet" ) {
+
143 initializeSugarbeetShoots();
+
144 }else if( plant_label == "tomato" ) {
+
145 initializeTomatoShoots();
+
146 }else if( plant_label == "wheat" ) {
+
147 initializeWheatShoots();
+
148 }else{
+
149 helios_runtime_error("ERROR (PlantArchitecture::loadPlantModelFromLibrary): plant label of " + plant_label + " does not exist in the library.");
+
150 }
+
151
+
152}
+
153
+
154void PlantArchitecture::initializeAlmondTreeShoots(){
+
155
+
156 // ---- Phytomer Parameters ---- //
+
157
+
158 PhytomerParameters phytomer_parameters_almond(context_ptr->getRandomGenerator());
159
-
160 phytomer_parameters_almond.leaf.leaves_per_petiole = 1;
-
161 phytomer_parameters_almond.leaf.prototype_function = AlmondLeafPrototype;
-
162 phytomer_parameters_almond.leaf.prototype_scale = 0.09;
-
163 phytomer_parameters_almond.leaf.unique_prototypes = 1;
-
164
-
165 phytomer_parameters_almond.peduncle.length = 0.005;
-
166 phytomer_parameters_almond.peduncle.radius = 0.0005;
-
167 phytomer_parameters_almond.peduncle.pitch = 90;
-
168 phytomer_parameters_almond.peduncle.roll = 90;
-
169 phytomer_parameters_almond.peduncle.length_segments = 1;
-
170
-
171 phytomer_parameters_almond.inflorescence.flowers_per_rachis = 1;
-
172 phytomer_parameters_almond.inflorescence.pitch = 0;
-
173 phytomer_parameters_almond.inflorescence.roll = 0;
-
174 phytomer_parameters_almond.inflorescence.flower_prototype_scale = 0.03;
-
175 phytomer_parameters_almond.inflorescence.flower_prototype_function = AlmondFlowerPrototype;
-
176 phytomer_parameters_almond.inflorescence.fruit_prototype_scale = 0.05;
-
177 phytomer_parameters_almond.inflorescence.fruit_prototype_function = AlmondFruitPrototype;
-
178
-
179 // ---- Shoot Parameters ---- //
+
160 phytomer_parameters_almond.internode.pitch = 0;
+
161 phytomer_parameters_almond.internode.phyllotactic_angle.uniformDistribution( 130, 145 );
+
162 phytomer_parameters_almond.internode.length_segments = 1;
+
163 phytomer_parameters_almond.internode.image_texture = "plugins/plantarchitecture/assets/textures/AlmondBark.jpg";
+
164 phytomer_parameters_almond.internode.max_floral_buds_per_petiole = 3;
+
165
+
166 phytomer_parameters_almond.petiole.petioles_per_internode = 1;
+
167 phytomer_parameters_almond.petiole.pitch = -50;
+
168 phytomer_parameters_almond.petiole.taper = 0.1;
+
169 phytomer_parameters_almond.petiole.curvature = 0;
+
170 phytomer_parameters_almond.petiole.length = 0.04;
+
171 phytomer_parameters_almond.petiole.radius = 0.0005;
+
172 phytomer_parameters_almond.petiole.length_segments = 1;
+
173 phytomer_parameters_almond.petiole.radial_subdivisions = 3;
+
174 phytomer_parameters_almond.petiole.color = make_RGBcolor(0.61,0.5,0.24);
+
175
+
176 phytomer_parameters_almond.leaf.leaves_per_petiole = 1;
+
177 phytomer_parameters_almond.leaf.prototype_function = AlmondLeafPrototype;
+
178 phytomer_parameters_almond.leaf.prototype_scale = 0.08;
+
179 phytomer_parameters_almond.leaf.unique_prototypes = 1;
180
-
181 // Trunk
-
182 ShootParameters shoot_parameters_trunk(context_ptr->getRandomGenerator());
-
183 shoot_parameters_trunk.phytomer_parameters = phytomer_parameters_almond;
-
184 shoot_parameters_trunk.phytomer_parameters.internode.phyllotactic_angle = 0;
-
185 shoot_parameters_trunk.phytomer_parameters.internode.radial_subdivisions = 14;
-
186 shoot_parameters_trunk.max_nodes = 20;
-
187 shoot_parameters_trunk.girth_growth_rate = 0.00075;
-
188 shoot_parameters_trunk.internode_radius_initial = 0.01;
-
189 shoot_parameters_trunk.vegetative_bud_break_probability = 0;
-
190 shoot_parameters_trunk.vegetative_bud_break_time = 0;
-
191 shoot_parameters_trunk.tortuosity = 6;
-
192 shoot_parameters_trunk.internode_length_max = 0.05;
-
193 shoot_parameters_trunk.internode_length_decay_rate = 0;
-
194 shoot_parameters_trunk.defineChildShootTypes({"scaffold"},{1});
-
195
-
196 // Proleptic shoots
-
197 ShootParameters shoot_parameters_proleptic(context_ptr->getRandomGenerator());
-
198 shoot_parameters_proleptic.phytomer_parameters = phytomer_parameters_almond;
-
199 shoot_parameters_proleptic.phytomer_parameters.internode.color = make_RGBcolor(0.3,0.2,0.2);
-
200 shoot_parameters_proleptic.phytomer_parameters.phytomer_creation_function = AlmondPhytomerCreationFunction;
-
201 shoot_parameters_proleptic.phytomer_parameters.phytomer_callback_function = AlmondPhytomerCallbackFunction;
-
202 shoot_parameters_proleptic.max_nodes = 40;
-
203 shoot_parameters_proleptic.phyllochron = 0.9;
-
204 shoot_parameters_proleptic.elongation_rate = 0.25;
-
205 shoot_parameters_proleptic.girth_growth_rate = 0.00045;
-
206 shoot_parameters_proleptic.vegetative_bud_break_probability = 0.15;
-
207 shoot_parameters_proleptic.vegetative_bud_break_time = 0;
-
208 shoot_parameters_proleptic.leaf_flush_count = 1;
-
209 shoot_parameters_proleptic.gravitropic_curvature = 300;
-
210 shoot_parameters_proleptic.tortuosity = 15;
-
211 shoot_parameters_proleptic.internode_radius_initial = 0.004;
-
212 shoot_parameters_proleptic.insertion_angle_tip.uniformDistribution( 20, 25);
-
213 shoot_parameters_proleptic.insertion_angle_decay_rate = 15;
-
214 shoot_parameters_proleptic.internode_length_max = 0.04;
-
215 shoot_parameters_proleptic.internode_length_min = 0.003;
-
216 shoot_parameters_proleptic.internode_length_decay_rate = 0.004;
-
217 shoot_parameters_proleptic.fruit_set_probability = 0.5;
-
218 shoot_parameters_proleptic.flower_bud_break_probability = 0.3;
-
219 shoot_parameters_proleptic.max_terminal_floral_buds = 4;
-
220 shoot_parameters_proleptic.flowers_require_dormancy = true;
-
221 shoot_parameters_proleptic.growth_requires_dormancy = true;
-
222 shoot_parameters_proleptic.determinate_shoot_growth = false;
-
223 shoot_parameters_proleptic.defineChildShootTypes({"proleptic","sylleptic"},{1.0,0.});
-
224
-
225 // Sylleptic shoots
-
226 ShootParameters shoot_parameters_sylleptic = shoot_parameters_proleptic;
-
227// shoot_parameters_sylleptic.phytomer_parameters.internode.color = RGB::red;
-
228 shoot_parameters_sylleptic.phytomer_parameters.internode.image_texture = "";
-
229 shoot_parameters_sylleptic.phytomer_parameters.leaf.prototype_scale = 0.12;
-
230 shoot_parameters_sylleptic.phytomer_parameters.leaf.pitch.uniformDistribution(-45, -20);
-
231 shoot_parameters_sylleptic.insertion_angle_tip = 0;
-
232 shoot_parameters_sylleptic.insertion_angle_decay_rate = 0;
-
233 shoot_parameters_sylleptic.phyllochron = 0.9;
-
234 shoot_parameters_sylleptic.vegetative_bud_break_probability = 0.1;
-
235 shoot_parameters_sylleptic.gravitropic_curvature= 600;
-
236 shoot_parameters_sylleptic.internode_length_max = 0.06;
-
237 shoot_parameters_sylleptic.flowers_require_dormancy = true;
-
238 shoot_parameters_sylleptic.growth_requires_dormancy = true;
-
239 shoot_parameters_sylleptic.defineChildShootTypes({"proleptic"},{1.0});
+
181 phytomer_parameters_almond.peduncle.length = 0.005;
+
182 phytomer_parameters_almond.peduncle.radius = 0.0005;
+
183 phytomer_parameters_almond.peduncle.pitch = 90;
+
184 phytomer_parameters_almond.peduncle.roll = 90;
+
185 phytomer_parameters_almond.peduncle.length_segments = 1;
+
186
+
187 phytomer_parameters_almond.inflorescence.flowers_per_peduncle = 1;
+
188 phytomer_parameters_almond.inflorescence.pitch = 0;
+
189 phytomer_parameters_almond.inflorescence.roll = 0;
+
190 phytomer_parameters_almond.inflorescence.flower_prototype_scale = 0.03;
+
191 phytomer_parameters_almond.inflorescence.flower_prototype_function = AlmondFlowerPrototype;
+
192 phytomer_parameters_almond.inflorescence.fruit_prototype_scale = 0.05;
+
193 phytomer_parameters_almond.inflorescence.fruit_prototype_function = AlmondFruitPrototype;
+
194
+
195 // ---- Shoot Parameters ---- //
+
196
+
197 // Trunk
+
198 ShootParameters shoot_parameters_trunk(context_ptr->getRandomGenerator());
+
199 shoot_parameters_trunk.phytomer_parameters = phytomer_parameters_almond;
+
200 shoot_parameters_trunk.phytomer_parameters.internode.phyllotactic_angle = 0;
+
201 shoot_parameters_trunk.phytomer_parameters.internode.radial_subdivisions = 24;
+
202 shoot_parameters_trunk.max_nodes = 20;
+
203 shoot_parameters_trunk.girth_area_factor = 35.f;
+
204 shoot_parameters_trunk.internode_radius_initial = 0.01;
+
205 shoot_parameters_trunk.vegetative_bud_break_probability = 0;
+
206 shoot_parameters_trunk.vegetative_bud_break_time = 0;
+
207 shoot_parameters_trunk.tortuosity = 6;
+
208 shoot_parameters_trunk.internode_length_max = 0.05;
+
209 shoot_parameters_trunk.internode_length_decay_rate = 0;
+
210 shoot_parameters_trunk.defineChildShootTypes({"scaffold"},{1});
+
211
+
212 // Proleptic shoots
+
213 ShootParameters shoot_parameters_proleptic(context_ptr->getRandomGenerator());
+
214 shoot_parameters_proleptic.phytomer_parameters = phytomer_parameters_almond;
+
215 shoot_parameters_proleptic.phytomer_parameters.internode.color = make_RGBcolor(0.3,0.2,0.2);
+
216 shoot_parameters_proleptic.phytomer_parameters.phytomer_creation_function = AlmondPhytomerCreationFunction;
+
217 shoot_parameters_proleptic.phytomer_parameters.phytomer_callback_function = AlmondPhytomerCallbackFunction;
+
218 shoot_parameters_proleptic.max_nodes = 40;
+
219 shoot_parameters_proleptic.phyllochron = 0.9;
+
220 shoot_parameters_proleptic.elongation_rate = 0.25;
+
221 shoot_parameters_proleptic.girth_area_factor = 35.f;
+
222 shoot_parameters_proleptic.vegetative_bud_break_probability = 0.15;
+
223 shoot_parameters_proleptic.vegetative_bud_break_time = 0;
+
224 shoot_parameters_proleptic.leaf_flush_count = 1;
+
225 shoot_parameters_proleptic.gravitropic_curvature = 300;
+
226 shoot_parameters_proleptic.tortuosity = 15;
+
227 shoot_parameters_proleptic.internode_radius_initial = 0.004;
+
228 shoot_parameters_proleptic.insertion_angle_tip.uniformDistribution( 20, 25);
+
229 shoot_parameters_proleptic.insertion_angle_decay_rate = 15;
+
230 shoot_parameters_proleptic.internode_length_max = 0.04;
+
231 shoot_parameters_proleptic.internode_length_min = 0.003;
+
232 shoot_parameters_proleptic.internode_length_decay_rate = 0.004;
+
233 shoot_parameters_proleptic.fruit_set_probability = 0.5;
+
234 shoot_parameters_proleptic.flower_bud_break_probability = 0.3;
+
235 shoot_parameters_proleptic.max_terminal_floral_buds = 4;
+
236 shoot_parameters_proleptic.flowers_require_dormancy = true;
+
237 shoot_parameters_proleptic.growth_requires_dormancy = true;
+
238 shoot_parameters_proleptic.determinate_shoot_growth = false;
+
239 shoot_parameters_proleptic.defineChildShootTypes({"proleptic","sylleptic"},{1.0,0.});
240
-
241 // Main scaffolds
-
242 ShootParameters shoot_parameters_scaffold = shoot_parameters_proleptic;
-
243// shoot_parameters_scaffold.phytomer_parameters.internode.color = RGB::blue;
-
244 shoot_parameters_scaffold.phytomer_parameters.internode.radial_subdivisions = 10;
-
245 shoot_parameters_scaffold.max_nodes = 40;
-
246 shoot_parameters_scaffold.gravitropic_curvature = 300;
-
247 shoot_parameters_scaffold.internode_length_max = 0.04;
-
248 shoot_parameters_scaffold.tortuosity = 7;
-
249 shoot_parameters_scaffold.girth_growth_rate = 0.0005;
-
250 shoot_parameters_scaffold.defineChildShootTypes({"proleptic"},{1.0});
-
251
-
252 defineShootType("trunk", shoot_parameters_trunk);
-
253 defineShootType("scaffold", shoot_parameters_scaffold);
-
254 defineShootType("proleptic", shoot_parameters_proleptic);
-
255 defineShootType("sylleptic", shoot_parameters_sylleptic);
+
241 // Sylleptic shoots
+
242 ShootParameters shoot_parameters_sylleptic = shoot_parameters_proleptic;
+
243// shoot_parameters_sylleptic.phytomer_parameters.internode.color = RGB::red;
+
244 shoot_parameters_sylleptic.phytomer_parameters.internode.image_texture = "";
+
245 shoot_parameters_sylleptic.phytomer_parameters.leaf.prototype_scale = 0.12;
+
246 shoot_parameters_sylleptic.phytomer_parameters.leaf.pitch.uniformDistribution(-45, -20);
+
247 shoot_parameters_sylleptic.insertion_angle_tip = 0;
+
248 shoot_parameters_sylleptic.insertion_angle_decay_rate = 0;
+
249 shoot_parameters_sylleptic.phyllochron = 0.9;
+
250 shoot_parameters_sylleptic.vegetative_bud_break_probability = 0.1;
+
251 shoot_parameters_sylleptic.gravitropic_curvature= 600;
+
252 shoot_parameters_sylleptic.internode_length_max = 0.06;
+
253 shoot_parameters_sylleptic.flowers_require_dormancy = true;
+
254 shoot_parameters_sylleptic.growth_requires_dormancy = true;
+
255 shoot_parameters_sylleptic.defineChildShootTypes({"proleptic"},{1.0});
256
-
257}
-
258
-
259uint PlantArchitecture::buildAlmondTree(const helios::vec3 &base_position, float age) {
-
260
-
261 if( shoot_types.empty() ){
-
262 //automatically initialize almond tree shoots
-
263 initializeAlmondTreeShoots();
-
264 }
-
265
-
266 uint plantID = addPlantInstance(base_position, age);
-
267
-
268// enableEpicormicChildShoots(plantID,"sylleptic",0.001);
-
269
-
270 uint uID_trunk = addBaseStemShoot(plantID, 19, make_AxisRotation(context_ptr->randu(0.f, 0.05f * M_PI), context_ptr->randu(0.f, 2.f * M_PI), 0.f * M_PI), 0.015, 0.04, 1.f, 1.f, 0, "trunk");
-
271 appendPhytomerToShoot( plantID, uID_trunk, shoot_types.at("trunk").phytomer_parameters, 0, 0.01, 1, 1);
-
272
-
273 plant_instances.at(plantID).shoot_tree.at(uID_trunk)->meristem_is_alive = false;
-
274
-
275 auto phytomers = plant_instances.at(plantID).shoot_tree.at(uID_trunk)->phytomers;
-
276 for( const auto & phytomer : phytomers ){
-
277 phytomer->removeLeaf();
-
278 phytomer->setVegetativeBudState(BUD_DEAD);
-
279 phytomer->setFloralBudState(BUD_DEAD);
-
280 }
-
281
-
282 uint Nscaffolds = 4;//context_ptr->randu(4,5);
-
283
-
284 for( int i=0; i<Nscaffolds; i++ ) {
-
285// float pitch = context_ptr->randu(deg2rad(25), deg2rad(35))+i*deg2rad(7.f);
-
286 float pitch = context_ptr->randu(deg2rad(45), deg2rad(55));
-
287 uint uID_shoot = addChildShoot( plantID, uID_trunk, getShootNodeCount(plantID,uID_trunk)-i-1, context_ptr->randu(7, 9), make_AxisRotation(pitch, (float(i) + context_ptr->randu(-0.2f, 0.2f)) / float(Nscaffolds) * 2 * M_PI, 0), 0.007, 0.06, 1.f, 1.f, 0.5, "scaffold", 0);
-
288
-
289// plant_instances.at(plantID).shoot_tree.at(uID_shoot)->breakDormancy();
-
290
-
291// uint blind_nodes = context_ptr->randu(4,5);
-
292// for( int b=0; b<blind_nodes; b++){
-
293// if( b<plant_instances.at(plantID).shoot_tree.at(uID_shoot)->phytomers.size() ) {
-
294// plant_instances.at(plantID).shoot_tree.at(uID_shoot)->phytomers.at(b)->removeLeaf();
-
295// plant_instances.at(plantID).shoot_tree.at(uID_shoot)->phytomers.at(b)->setFloralBudState(BUD_DEAD);
-
296// plant_instances.at(plantID).shoot_tree.at(uID_shoot)->phytomers.at(b)->setVegetativeBudState(BUD_DEAD);
-
297// }
-
298// }
-
299
-
300 }
-
301
-
302 makePlantDormant(plantID);
+
257 // Main scaffolds
+
258 ShootParameters shoot_parameters_scaffold = shoot_parameters_proleptic;
+
259// shoot_parameters_scaffold.phytomer_parameters.internode.color = RGB::blue;
+
260 shoot_parameters_scaffold.phytomer_parameters.internode.radial_subdivisions = 10;
+
261 shoot_parameters_scaffold.max_nodes = 40;
+
262 shoot_parameters_scaffold.gravitropic_curvature = 300;
+
263 shoot_parameters_scaffold.internode_length_max = 0.04;
+
264 shoot_parameters_scaffold.tortuosity = 7;
+
265 shoot_parameters_scaffold.defineChildShootTypes({"proleptic"},{1.0});
+
266
+
267 defineShootType("trunk", shoot_parameters_trunk);
+
268 defineShootType("scaffold", shoot_parameters_scaffold);
+
269 defineShootType("proleptic", shoot_parameters_proleptic);
+
270 defineShootType("sylleptic", shoot_parameters_sylleptic);
+
271
+
272}
+
273
+
274uint PlantArchitecture::buildAlmondTree(const helios::vec3 &base_position) {
+
275
+
276 if( shoot_types.empty() ){
+
277 //automatically initialize almond tree shoots
+
278 initializeAlmondTreeShoots();
+
279 }
+
280
+
281 uint plantID = addPlantInstance(base_position, 0);
+
282
+
283// enableEpicormicChildShoots(plantID,"sylleptic",0.001);
+
284
+
285 uint uID_trunk = addBaseStemShoot(plantID, 19, make_AxisRotation(context_ptr->randu(0.f, 0.05f * M_PI), context_ptr->randu(0.f, 2.f * M_PI), 0.f * M_PI), 0.015, 0.04, 1.f, 1.f, 0, "trunk");
+
286 appendPhytomerToShoot( plantID, uID_trunk, shoot_types.at("trunk").phytomer_parameters, 0, 0.01, 1, 1);
+
287
+
288 plant_instances.at(plantID).shoot_tree.at(uID_trunk)->meristem_is_alive = false;
+
289
+
290 auto phytomers = plant_instances.at(plantID).shoot_tree.at(uID_trunk)->phytomers;
+
291 for( const auto & phytomer : phytomers ){
+
292 phytomer->removeLeaf();
+
293 phytomer->setVegetativeBudState(BUD_DEAD);
+
294 phytomer->setFloralBudState(BUD_DEAD);
+
295 }
+
296
+
297 uint Nscaffolds = 4;//context_ptr->randu(4,5);
+
298
+
299 for( int i=0; i<Nscaffolds; i++ ) {
+
300// float pitch = context_ptr->randu(deg2rad(25), deg2rad(35))+i*deg2rad(7.f);
+
301 float pitch = context_ptr->randu(deg2rad(45), deg2rad(55));
+
302 uint uID_shoot = addChildShoot( plantID, uID_trunk, getShootNodeCount(plantID,uID_trunk)-i-1, context_ptr->randu(7, 9), make_AxisRotation(pitch, (float(i) + context_ptr->randu(-0.2f, 0.2f)) / float(Nscaffolds) * 2 * M_PI, 0), 0.007, 0.06, 1.f, 1.f, 0.5, "scaffold", 0);
303
-
304 setPlantPhenologicalThresholds(plantID, 0, -1, 1, 3, 8, 20);
+
304// plant_instances.at(plantID).shoot_tree.at(uID_shoot)->breakDormancy();
305
-
306 return plantID;
-
307
-
308}
-
309
-
310void PlantArchitecture::initializeAsparagusShoots() {
-
311
-
312 // ---- Phytomer Parameters ---- //
-
313
-
314 PhytomerParameters phytomer_parameters(context_ptr->getRandomGenerator());
-
315
-
316 phytomer_parameters.internode.pitch = 1;
-
317 phytomer_parameters.internode.phyllotactic_angle.uniformDistribution(127.5, 147.5);
-
318 phytomer_parameters.internode.max_floral_buds_per_petiole = 0;
-
319 phytomer_parameters.internode.max_vegetative_buds_per_petiole = 1;
-
320 phytomer_parameters.internode.color = RGB::forestgreen;
-
321 phytomer_parameters.internode.length_segments = 2;
+
306// uint blind_nodes = context_ptr->randu(4,5);
+
307// for( int b=0; b<blind_nodes; b++){
+
308// if( b<plant_instances.at(plantID).shoot_tree.at(uID_shoot)->phytomers.size() ) {
+
309// plant_instances.at(plantID).shoot_tree.at(uID_shoot)->phytomers.at(b)->removeLeaf();
+
310// plant_instances.at(plantID).shoot_tree.at(uID_shoot)->phytomers.at(b)->setFloralBudState(BUD_DEAD);
+
311// plant_instances.at(plantID).shoot_tree.at(uID_shoot)->phytomers.at(b)->setVegetativeBudState(BUD_DEAD);
+
312// }
+
313// }
+
314
+
315 }
+
316
+
317 makePlantDormant(plantID);
+
318
+
319 setPlantPhenologicalThresholds(plantID, 0, -1, 1, 3, 8, 20, false);
+
320
+
321 return plantID;
322
-
323 phytomer_parameters.petiole.petioles_per_internode = 1;
-
324 phytomer_parameters.petiole.pitch = 90;
-
325 phytomer_parameters.petiole.radius = 0.0001;
-
326 phytomer_parameters.petiole.length = 0.0005;
-
327 phytomer_parameters.petiole.taper = 0.5;
-
328 phytomer_parameters.petiole.curvature = 0;
-
329 phytomer_parameters.petiole.color = phytomer_parameters.internode.color;
-
330 phytomer_parameters.petiole.length_segments = 1;
-
331 phytomer_parameters.petiole.radial_subdivisions = 5;
-
332
-
333 phytomer_parameters.leaf.leaves_per_petiole = 5;
-
334 phytomer_parameters.leaf.pitch.normalDistribution(-5, 30);
-
335 phytomer_parameters.leaf.yaw = 30;
-
336 phytomer_parameters.leaf.roll = 0;
-
337 phytomer_parameters.leaf.leaflet_offset = 0;
-
338 phytomer_parameters.leaf.leaflet_scale = 0.9;
-
339 phytomer_parameters.leaf.prototype_function = AsparagusLeafPrototype;
-
340 phytomer_parameters.leaf.prototype_scale.uniformDistribution(0.018, 0.02);
-
341// phytomer_parameters.leaf.subdivisions = 6;
-
342
-
343 phytomer_parameters.peduncle.length = 0.17;
-
344 phytomer_parameters.peduncle.radius = 0.0015;
-
345 phytomer_parameters.peduncle.pitch.uniformDistribution(0, 30);
-
346 phytomer_parameters.peduncle.roll = 90;
-
347 phytomer_parameters.peduncle.curvature.uniformDistribution(50, 250);
-
348 phytomer_parameters.peduncle.length_segments = 6;
-
349 phytomer_parameters.peduncle.radial_subdivisions = 6;
-
350
-
351 phytomer_parameters.inflorescence.flowers_per_rachis.uniformDistribution(1, 3);
-
352 phytomer_parameters.inflorescence.flower_offset = 0.;
-
353 phytomer_parameters.inflorescence.flower_arrangement_pattern = "opposite";
-
354 phytomer_parameters.inflorescence.pitch.uniformDistribution(50, 70);
-
355 phytomer_parameters.inflorescence.roll.uniformDistribution(-20, 20);
-
356 phytomer_parameters.inflorescence.flower_prototype_scale = 0.015;
-
357 phytomer_parameters.inflorescence.fruit_prototype_scale.uniformDistribution(0.02, 0.025);
-
358 phytomer_parameters.inflorescence.fruit_gravity_factor_fraction.uniformDistribution(0., 0.5);
-
359
-
360 // ---- Shoot Parameters ---- //
-
361
-
362 ShootParameters shoot_parameters(context_ptr->getRandomGenerator());
-
363 shoot_parameters.phytomer_parameters = phytomer_parameters;
-
364 shoot_parameters.phytomer_parameters.phytomer_creation_function = AsparagusPhytomerCreationFunction;
-
365
-
366 shoot_parameters.max_nodes = 20;
-
367 shoot_parameters.internode_radius_initial = 0.0001;
-
368 shoot_parameters.internode_radius_max = 0.0003;
-
369 shoot_parameters.insertion_angle_tip.uniformDistribution(40, 70);
-
370// shoot_parameters.child_insertion_angle_decay_rate = 0; (default)
-
371 shoot_parameters.internode_length_max = 0.015;
-
372// shoot_parameters.child_internode_length_min = 0.0; (default)
-
373// shoot_parameters.child_internode_length_decay_rate = 0; (default)
-
374 shoot_parameters.base_roll = 90;
-
375 shoot_parameters.base_yaw.uniformDistribution(-20, 20);
-
376 shoot_parameters.gravitropic_curvature = -200;
-
377
-
378 shoot_parameters.phyllochron = 1;
-
379// shoot_parameters.leaf_flush_count = 1; (default)
-
380 shoot_parameters.elongation_rate = 0.15;
-
381 shoot_parameters.girth_growth_rate = 0.00005;
-
382 shoot_parameters.vegetative_bud_break_time = 5;
-
383 shoot_parameters.vegetative_bud_break_probability = 0.25;
-
384// shoot_parameters.max_terminal_floral_buds = 0; (default)
-
385// shoot_parameters.flower_bud_break_probability.uniformDistribution(0.1, 0.2);
-
386 shoot_parameters.fruit_set_probability = 0.;
-
387// shoot_parameters.flowers_require_dormancy = false; (default)
-
388// shoot_parameters.growth_requires_dormancy = false; (default)
-
389// shoot_parameters.determinate_shoot_growth = true; (default)
-
390
-
391 shoot_parameters.defineChildShootTypes({"main"}, {1.0});
-
392
-
393 defineShootType("main", shoot_parameters);
-
394
-
395}
-
396
-
397uint PlantArchitecture::buildAsparagusPlant(const helios::vec3 &base_position, float age) {
-
398
-
399 if (shoot_types.empty()) {
-
400 //automatically initialize asparagus plant shoots
-
401 initializeAsparagusShoots();
-
402 }
-
403
-
404 uint plantID = addPlantInstance(base_position, age);
-
405
-
406 uint uID_stem = addBaseStemShoot(plantID, 1, make_AxisRotation(0, 0.f, 0.f), 0.0003, 0.015, 1, 0.1, 0.1, "main");
-
407
-
408 breakPlantDormancy(plantID);
-
409
-
410 setPlantPhenologicalThresholds(plantID, 0, -1, -1, -1, 5, 100);
-
411
-
412 return plantID;
-
413
-
414}
-
415
-
416void PlantArchitecture::initializeBindweedShoots() {
-
417
-
418 // ---- Phytomer Parameters ---- //
-
419
-
420 PhytomerParameters phytomer_parameters_bindweed(context_ptr->getRandomGenerator());
-
421
-
422 phytomer_parameters_bindweed.internode.pitch.uniformDistribution(0,15);
-
423 phytomer_parameters_bindweed.internode.phyllotactic_angle = 180.f;
-
424 phytomer_parameters_bindweed.internode.color = make_RGBcolor(0.64, 0.71, 0.53);
-
425 phytomer_parameters_bindweed.internode.length_segments = 1;
+
323}
+
324
+
325void PlantArchitecture::initializeAppleTreeShoots(){
+
326
+
327 // ---- Phytomer Parameters ---- //
+
328
+
329 PhytomerParameters phytomer_parameters_apple(context_ptr->getRandomGenerator());
+
330
+
331 phytomer_parameters_apple.internode.pitch = 0;
+
332 phytomer_parameters_apple.internode.phyllotactic_angle.uniformDistribution( 130, 145 );
+
333 phytomer_parameters_apple.internode.length_segments = 1;
+
334 phytomer_parameters_apple.internode.image_texture = "plugins/plantarchitecture/assets/textures/WesternRedbudBark.jpg";
+
335 phytomer_parameters_apple.internode.max_floral_buds_per_petiole = 1;
+
336
+
337 phytomer_parameters_apple.petiole.petioles_per_internode = 1;
+
338 phytomer_parameters_apple.petiole.pitch.uniformDistribution(-25,-40);
+
339 phytomer_parameters_apple.petiole.taper = 0.1;
+
340 phytomer_parameters_apple.petiole.curvature = 0;
+
341 phytomer_parameters_apple.petiole.length = 0.04;
+
342 phytomer_parameters_apple.petiole.radius = 0.00075;
+
343 phytomer_parameters_apple.petiole.length_segments = 1;
+
344 phytomer_parameters_apple.petiole.radial_subdivisions = 3;
+
345 phytomer_parameters_apple.petiole.color = make_RGBcolor(0.61,0.5,0.24);
+
346
+
347 phytomer_parameters_apple.leaf.leaves_per_petiole = 1;
+
348 phytomer_parameters_apple.leaf.prototype_function = AppleLeafPrototype;
+
349 phytomer_parameters_apple.leaf.prototype_scale = 0.12;
+
350 phytomer_parameters_apple.leaf.unique_prototypes = 1;
+
351
+
352 phytomer_parameters_apple.peduncle.length = 0.04;
+
353 phytomer_parameters_apple.peduncle.radius = 0.001;
+
354 phytomer_parameters_apple.peduncle.pitch = 90;
+
355 phytomer_parameters_apple.peduncle.roll = 90;
+
356 phytomer_parameters_apple.peduncle.length_segments = 1;
+
357
+
358 phytomer_parameters_apple.inflorescence.flowers_per_peduncle = 1;
+
359 phytomer_parameters_apple.inflorescence.pitch = 0;
+
360 phytomer_parameters_apple.inflorescence.roll = 0;
+
361 phytomer_parameters_apple.inflorescence.flower_prototype_scale = 0.03;
+
362 phytomer_parameters_apple.inflorescence.flower_prototype_function = AppleFlowerPrototype;
+
363 phytomer_parameters_apple.inflorescence.fruit_prototype_scale = 0.1;
+
364 phytomer_parameters_apple.inflorescence.fruit_prototype_function = AppleFruitPrototype;
+
365 phytomer_parameters_apple.inflorescence.fruit_gravity_factor_fraction = 0.5;
+
366
+
367 // ---- Shoot Parameters ---- //
+
368
+
369 // Trunk
+
370 ShootParameters shoot_parameters_trunk(context_ptr->getRandomGenerator());
+
371 shoot_parameters_trunk.phytomer_parameters = phytomer_parameters_apple;
+
372 shoot_parameters_trunk.phytomer_parameters.internode.phyllotactic_angle = 0;
+
373 shoot_parameters_trunk.phytomer_parameters.internode.radial_subdivisions = 24;
+
374 shoot_parameters_trunk.max_nodes = 20;
+
375 shoot_parameters_trunk.girth_area_factor = 16.f;
+
376 shoot_parameters_trunk.internode_radius_initial = 0.01;
+
377 shoot_parameters_trunk.vegetative_bud_break_probability = 0;
+
378 shoot_parameters_trunk.vegetative_bud_break_time = 0;
+
379 shoot_parameters_trunk.tortuosity = 6;
+
380 shoot_parameters_trunk.internode_length_max = 0.05;
+
381 shoot_parameters_trunk.internode_length_decay_rate = 0;
+
382 shoot_parameters_trunk.defineChildShootTypes({"scaffold"},{1});
+
383
+
384 // Proleptic shoots
+
385 ShootParameters shoot_parameters_proleptic(context_ptr->getRandomGenerator());
+
386 shoot_parameters_proleptic.phytomer_parameters = phytomer_parameters_apple;
+
387 shoot_parameters_proleptic.phytomer_parameters.internode.color = make_RGBcolor(0.3,0.2,0.2);
+
388 shoot_parameters_proleptic.phytomer_parameters.phytomer_creation_function = AlmondPhytomerCreationFunction;
+
389 shoot_parameters_proleptic.phytomer_parameters.phytomer_callback_function = AlmondPhytomerCallbackFunction;
+
390 shoot_parameters_proleptic.max_nodes = 40;
+
391 shoot_parameters_proleptic.phyllochron = 0.9;
+
392 shoot_parameters_proleptic.elongation_rate = 0.25;
+
393 shoot_parameters_proleptic.girth_area_factor = 20.f;
+
394 shoot_parameters_proleptic.vegetative_bud_break_probability = 0.15;
+
395 shoot_parameters_proleptic.vegetative_bud_break_time = 0;
+
396 shoot_parameters_proleptic.leaf_flush_count = 1;
+
397 shoot_parameters_proleptic.gravitropic_curvature = 500;
+
398 shoot_parameters_proleptic.tortuosity = 20;
+
399 shoot_parameters_proleptic.internode_radius_initial = 0.006;
+
400 shoot_parameters_proleptic.insertion_angle_tip.uniformDistribution( 20, 25);
+
401 shoot_parameters_proleptic.insertion_angle_decay_rate = 20;
+
402 shoot_parameters_proleptic.internode_length_max = 0.035;
+
403 shoot_parameters_proleptic.internode_length_min = 0.01;
+
404 shoot_parameters_proleptic.internode_length_decay_rate = 0.004;
+
405 shoot_parameters_proleptic.fruit_set_probability = 0.4;
+
406 shoot_parameters_proleptic.flower_bud_break_probability = 0.3;
+
407 shoot_parameters_proleptic.max_terminal_floral_buds = 4;
+
408 shoot_parameters_proleptic.flowers_require_dormancy = true;
+
409 shoot_parameters_proleptic.growth_requires_dormancy = true;
+
410 shoot_parameters_proleptic.determinate_shoot_growth = false;
+
411 shoot_parameters_proleptic.defineChildShootTypes({"proleptic","sylleptic"},{1.0,0.});
+
412
+
413 // Sylleptic shoots
+
414 ShootParameters shoot_parameters_sylleptic = shoot_parameters_proleptic;
+
415 shoot_parameters_sylleptic.phytomer_parameters.internode.image_texture = "";
+
416 shoot_parameters_sylleptic.phytomer_parameters.leaf.prototype_scale = 0.12;
+
417 shoot_parameters_sylleptic.phytomer_parameters.leaf.pitch.uniformDistribution(-45, -20);
+
418 shoot_parameters_sylleptic.insertion_angle_tip = 0;
+
419 shoot_parameters_sylleptic.insertion_angle_decay_rate = 0;
+
420 shoot_parameters_sylleptic.vegetative_bud_break_probability = 0.1;
+
421 shoot_parameters_sylleptic.gravitropic_curvature= 600;
+
422 shoot_parameters_sylleptic.internode_length_max = 0.06;
+
423 shoot_parameters_sylleptic.flowers_require_dormancy = true;
+
424 shoot_parameters_sylleptic.growth_requires_dormancy = true;
+
425 shoot_parameters_sylleptic.defineChildShootTypes({"proleptic"},{1.0});
426
-
427 phytomer_parameters_bindweed.petiole.petioles_per_internode = 1;
-
428 phytomer_parameters_bindweed.petiole.pitch.uniformDistribution(80, 100);
-
429 phytomer_parameters_bindweed.petiole.radius = 0.001;
-
430 phytomer_parameters_bindweed.petiole.length = 0.005;
-
431 phytomer_parameters_bindweed.petiole.taper = 0;
-
432 phytomer_parameters_bindweed.petiole.curvature = 0;
-
433 phytomer_parameters_bindweed.petiole.color = phytomer_parameters_bindweed.internode.color;
-
434 phytomer_parameters_bindweed.petiole.length_segments = 1;
+
427 // Main scaffolds
+
428 ShootParameters shoot_parameters_scaffold = shoot_parameters_proleptic;
+
429 shoot_parameters_scaffold.phytomer_parameters.internode.radial_subdivisions = 10;
+
430 shoot_parameters_scaffold.max_nodes = 40;
+
431 shoot_parameters_scaffold.gravitropic_curvature = 400;
+
432 shoot_parameters_scaffold.internode_length_max = 0.04;
+
433 shoot_parameters_scaffold.tortuosity = 10;
+
434 shoot_parameters_scaffold.defineChildShootTypes({"proleptic"},{1.0});
435
-
436 phytomer_parameters_bindweed.leaf.leaves_per_petiole = 1;
-
437 phytomer_parameters_bindweed.leaf.pitch.uniformDistribution(5, 30);
-
438 phytomer_parameters_bindweed.leaf.yaw = 0;
-
439 phytomer_parameters_bindweed.leaf.roll = 90;
-
440 phytomer_parameters_bindweed.leaf.prototype_function = BindweedLeafPrototype;
-
441 phytomer_parameters_bindweed.leaf.prototype_scale = 0.04;
+
436 defineShootType("trunk", shoot_parameters_trunk);
+
437 defineShootType("scaffold", shoot_parameters_scaffold);
+
438 defineShootType("proleptic", shoot_parameters_proleptic);
+
439 defineShootType("sylleptic", shoot_parameters_sylleptic);
+
440
+
441}
442
-
443 phytomer_parameters_bindweed.peduncle.length = 0.001;
-
444 phytomer_parameters_bindweed.inflorescence.flowers_per_rachis = 1;
-
445 phytomer_parameters_bindweed.inflorescence.pitch = -90.f;
-
446 phytomer_parameters_bindweed.inflorescence.flower_prototype_function = BindweedFlowerPrototype;
-
447 phytomer_parameters_bindweed.inflorescence.flower_prototype_scale = 0.03;
-
448
-
449 // ---- Shoot Parameters ---- //
-
450
-
451 ShootParameters shoot_parameters_primary(context_ptr->getRandomGenerator());
-
452 shoot_parameters_primary.phytomer_parameters = phytomer_parameters_bindweed;
-
453 shoot_parameters_primary.vegetative_bud_break_probability = 0.25;
-
454 shoot_parameters_primary.vegetative_bud_break_time = 1;
-
455 shoot_parameters_primary.base_roll = 90;
-
456 shoot_parameters_primary.internode_radius_initial = 0.001;
-
457 shoot_parameters_primary.phyllochron = 1;
-
458 shoot_parameters_primary.elongation_rate = 0.25;
-
459 shoot_parameters_primary.girth_growth_rate = 0.;
-
460 shoot_parameters_primary.internode_length_max = 0.03;
-
461 shoot_parameters_primary.internode_length_decay_rate = 0;
-
462 shoot_parameters_primary.insertion_angle_tip.uniformDistribution(50, 80);
-
463 shoot_parameters_primary.flowers_require_dormancy = false;
-
464 shoot_parameters_primary.growth_requires_dormancy = false;
-
465 shoot_parameters_primary.flower_bud_break_probability = 0.2;
-
466 shoot_parameters_primary.determinate_shoot_growth = false;
-
467 shoot_parameters_primary.max_nodes = 15;
-
468 shoot_parameters_primary.gravitropic_curvature = 20;
-
469 shoot_parameters_primary.tortuosity = 0;
-
470 shoot_parameters_primary.defineChildShootTypes({"secondary_bindweed"}, {1.f});
+
443uint PlantArchitecture::buildAppleTree(const helios::vec3 &base_position) {
+
444
+
445 if( shoot_types.empty() ){
+
446 //automatically initialize almond tree shoots
+
447 initializeAlmondTreeShoots();
+
448 }
+
449
+
450 uint plantID = addPlantInstance(base_position, 0);
+
451
+
452// enableEpicormicChildShoots(plantID,"sylleptic",0.001);
+
453
+
454 uint uID_trunk = addBaseStemShoot(plantID, 19, make_AxisRotation(context_ptr->randu(0.f, 0.05f * M_PI), context_ptr->randu(0.f, 2.f * M_PI), 0.f * M_PI), 0.015, 0.04, 1.f, 1.f, 0, "trunk");
+
455 appendPhytomerToShoot( plantID, uID_trunk, shoot_types.at("trunk").phytomer_parameters, 0, 0.01, 1, 1);
+
456
+
457 plant_instances.at(plantID).shoot_tree.at(uID_trunk)->meristem_is_alive = false;
+
458
+
459 auto phytomers = plant_instances.at(plantID).shoot_tree.at(uID_trunk)->phytomers;
+
460 for( const auto & phytomer : phytomers ){
+
461 phytomer->removeLeaf();
+
462 phytomer->setVegetativeBudState(BUD_DEAD);
+
463 phytomer->setFloralBudState(BUD_DEAD);
+
464 }
+
465
+
466 uint Nscaffolds = 4;//context_ptr->randu(4,5);
+
467
+
468 for( int i=0; i<Nscaffolds; i++ ) {
+
469 float pitch = context_ptr->randu(deg2rad(45), deg2rad(55));
+
470 uint uID_shoot = addChildShoot( plantID, uID_trunk, getShootNodeCount(plantID,uID_trunk)-i-1, context_ptr->randu(7, 9), make_AxisRotation(pitch, (float(i) + context_ptr->randu(-0.2f, 0.2f)) / float(Nscaffolds) * 2 * M_PI, 0), 0.007, 0.06, 1.f, 1.f, 0.5, "scaffold", 0);
471
-
472 ShootParameters shoot_parameters_base = shoot_parameters_primary;
-
473 shoot_parameters_base.phytomer_parameters = phytomer_parameters_bindweed;
-
474 shoot_parameters_base.phytomer_parameters.internode.phyllotactic_angle.uniformDistribution(137.5-10,137.5+10);
-
475 shoot_parameters_base.phytomer_parameters.petiole.petioles_per_internode = 0;
-
476 shoot_parameters_base.phytomer_parameters.internode.pitch = 0;
-
477 shoot_parameters_base.phytomer_parameters.petiole.pitch = 0;
-
478 shoot_parameters_base.vegetative_bud_break_probability = 1.0;
-
479 shoot_parameters_base.vegetative_bud_break_time = 1;
-
480 shoot_parameters_base.internode_radius_initial = 0.01;
-
481 shoot_parameters_base.phyllochron = 1;
-
482 shoot_parameters_base.elongation_rate = 0.25;
-
483 shoot_parameters_base.girth_growth_rate = 0.;
-
484 shoot_parameters_base.gravitropic_curvature = 0;
-
485 shoot_parameters_base.internode_length_max = 0.01;
-
486 shoot_parameters_base.internode_length_decay_rate = 0;
-
487 shoot_parameters_base.insertion_angle_tip = 95;
-
488 shoot_parameters_base.insertion_angle_decay_rate = 0;
-
489 shoot_parameters_base.internode_radius_initial = 0.001;
-
490 shoot_parameters_base.flowers_require_dormancy = false;
-
491 shoot_parameters_base.growth_requires_dormancy = false;
-
492 shoot_parameters_base.flower_bud_break_probability = 0.0;
-
493 shoot_parameters_base.max_nodes.uniformDistribution(3,5);
-
494 shoot_parameters_base.defineChildShootTypes({"primary_bindweed"},{1.f});
-
495
-
496 ShootParameters shoot_parameters_children = shoot_parameters_primary;
-
497 shoot_parameters_children.base_roll = 90;
-
498
-
499 defineShootType("base_bindweed", shoot_parameters_base);
-
500 defineShootType("primary_bindweed", shoot_parameters_primary);
-
501 defineShootType("secondary_bindweed", shoot_parameters_children);
-
502
-
503}
+
472 }
+
473
+
474 makePlantDormant(plantID);
+
475
+
476 setPlantPhenologicalThresholds(plantID, 0, -1, 1, 3, 8, 20, false);
+
477
+
478 return plantID;
+
479
+
480}
+
481
+
482void PlantArchitecture::initializeAsparagusShoots() {
+
483
+
484 // ---- Phytomer Parameters ---- //
+
485
+
486 PhytomerParameters phytomer_parameters(context_ptr->getRandomGenerator());
+
487
+
488 phytomer_parameters.internode.pitch = 1;
+
489 phytomer_parameters.internode.phyllotactic_angle.uniformDistribution(127.5, 147.5);
+
490 phytomer_parameters.internode.max_floral_buds_per_petiole = 0;
+
491 phytomer_parameters.internode.max_vegetative_buds_per_petiole = 1;
+
492 phytomer_parameters.internode.color = RGB::forestgreen;
+
493 phytomer_parameters.internode.length_segments = 2;
+
494
+
495 phytomer_parameters.petiole.petioles_per_internode = 1;
+
496 phytomer_parameters.petiole.pitch = 90;
+
497 phytomer_parameters.petiole.radius = 0.0001;
+
498 phytomer_parameters.petiole.length = 0.0005;
+
499 phytomer_parameters.petiole.taper = 0.5;
+
500 phytomer_parameters.petiole.curvature = 0;
+
501 phytomer_parameters.petiole.color = phytomer_parameters.internode.color;
+
502 phytomer_parameters.petiole.length_segments = 1;
+
503 phytomer_parameters.petiole.radial_subdivisions = 5;
504
-
505uint PlantArchitecture::buildBindweedPlant(const helios::vec3 &base_position, float age) {
-
506
-
507 if (shoot_types.empty()) {
-
508 //automatically initialize bindweed plant shoots
-
509 initializeBindweedShoots();
-
510 }
-
511
-
512 uint plantID = addPlantInstance(base_position, age);
-
513
-
514 uint uID_stem = addBaseStemShoot(plantID, 3, make_AxisRotation(0, 0.f, 0.f), 0.001, 0.001, 1, 1, 0, "base_bindweed");
-
515
-
516 breakPlantDormancy(plantID);
-
517
-
518 setPlantPhenologicalThresholds(plantID, 0, -1, 7, 1000, 5, 100);
-
519
-
520 return plantID;
-
521
-
522}
-
523
-
524void PlantArchitecture::initializeBeanShoots() {
-
525
-
526 PhytomerParameters phytomer_parameters_trifoliate(context_ptr->getRandomGenerator());
-
527
-
528 phytomer_parameters_trifoliate.internode.pitch = 20;
-
529 phytomer_parameters_trifoliate.internode.phyllotactic_angle.uniformDistribution(145, 215);
-
530 phytomer_parameters_trifoliate.internode.max_floral_buds_per_petiole = 1;
-
531 phytomer_parameters_trifoliate.internode.max_vegetative_buds_per_petiole = 1;
-
532 phytomer_parameters_trifoliate.internode.color = make_RGBcolor(0.2,0.25,0.05);
-
533 phytomer_parameters_trifoliate.internode.length_segments = 5;
-
534
-
535 phytomer_parameters_trifoliate.petiole.petioles_per_internode = 1;
-
536 phytomer_parameters_trifoliate.petiole.pitch.uniformDistribution(30,70);
-
537 phytomer_parameters_trifoliate.petiole.radius = 0.003;
-
538 phytomer_parameters_trifoliate.petiole.length.uniformDistribution(0.12,0.16);
-
539 phytomer_parameters_trifoliate.petiole.taper = 0.25;
-
540 phytomer_parameters_trifoliate.petiole.curvature.uniformDistribution(-100,200);
-
541 phytomer_parameters_trifoliate.petiole.color = make_RGBcolor(0.28,0.35,0.07);
-
542 phytomer_parameters_trifoliate.petiole.length_segments = 5;
-
543 phytomer_parameters_trifoliate.petiole.radial_subdivisions = 6;
-
544
-
545 phytomer_parameters_trifoliate.leaf.leaves_per_petiole = 3;
-
546 phytomer_parameters_trifoliate.leaf.pitch.normalDistribution(0, 10);
-
547 phytomer_parameters_trifoliate.leaf.yaw = 10;
-
548 phytomer_parameters_trifoliate.leaf.roll = -15;
-
549 phytomer_parameters_trifoliate.leaf.leaflet_offset = 0.2;
-
550 phytomer_parameters_trifoliate.leaf.leaflet_scale = 0.9;
-
551 phytomer_parameters_trifoliate.leaf.prototype_function = BeanLeafPrototype_trifoliate;
-
552 phytomer_parameters_trifoliate.leaf.prototype_scale.uniformDistribution(0.11,0.13);
-
553 phytomer_parameters_trifoliate.leaf.subdivisions = 10;
-
554 phytomer_parameters_trifoliate.leaf.unique_prototypes = 5;
-
555
-
556 phytomer_parameters_trifoliate.peduncle.length = 0.04;
-
557 phytomer_parameters_trifoliate.peduncle.radius = 0.001;
-
558 phytomer_parameters_trifoliate.peduncle.pitch.uniformDistribution(0, 40);
-
559 phytomer_parameters_trifoliate.peduncle.roll = 90;
-
560 phytomer_parameters_trifoliate.peduncle.curvature.uniformDistribution(-500, 500);
-
561 phytomer_parameters_trifoliate.peduncle.length_segments = 1;
-
562 phytomer_parameters_trifoliate.peduncle.radial_subdivisions = 6;
-
563
-
564 phytomer_parameters_trifoliate.inflorescence.flowers_per_rachis.uniformDistribution(1, 4);
-
565 phytomer_parameters_trifoliate.inflorescence.flower_offset = 0.2;
-
566 phytomer_parameters_trifoliate.inflorescence.flower_arrangement_pattern = "opposite";
-
567 phytomer_parameters_trifoliate.inflorescence.pitch.uniformDistribution(50,70);
-
568 phytomer_parameters_trifoliate.inflorescence.roll.uniformDistribution(-20,20);
-
569 phytomer_parameters_trifoliate.inflorescence.flower_prototype_scale = 0.015;
-
570 phytomer_parameters_trifoliate.inflorescence.flower_prototype_function = BeanFlowerPrototype;
-
571 phytomer_parameters_trifoliate.inflorescence.fruit_prototype_scale.uniformDistribution(0.08,0.1);
-
572 phytomer_parameters_trifoliate.inflorescence.fruit_prototype_function = BeanFruitPrototype;
-
573 phytomer_parameters_trifoliate.inflorescence.fruit_gravity_factor_fraction.uniformDistribution(0.8,1.0);
-
574
-
575 PhytomerParameters phytomer_parameters_unifoliate = phytomer_parameters_trifoliate;
-
576 phytomer_parameters_unifoliate.internode.pitch = 0;
-
577 phytomer_parameters_unifoliate.internode.max_vegetative_buds_per_petiole = 0;
-
578 phytomer_parameters_unifoliate.internode.max_floral_buds_per_petiole = 0;
-
579 phytomer_parameters_unifoliate.petiole.petioles_per_internode = 2;
-
580 phytomer_parameters_unifoliate.petiole.length = 0.001;
-
581 phytomer_parameters_unifoliate.petiole.radius = 0.0004;
-
582 phytomer_parameters_unifoliate.petiole.pitch.uniformDistribution(60,80);
-
583 phytomer_parameters_unifoliate.leaf.leaves_per_petiole = 1;
-
584 phytomer_parameters_unifoliate.leaf.prototype_scale = 0.02;
-
585 phytomer_parameters_unifoliate.leaf.pitch.uniformDistribution(-10, 10);
-
586 phytomer_parameters_unifoliate.leaf.prototype_function = BeanLeafPrototype_unifoliate;
+
505 phytomer_parameters.leaf.leaves_per_petiole = 5;
+
506 phytomer_parameters.leaf.pitch.normalDistribution(-5, 30);
+
507 phytomer_parameters.leaf.yaw = 30;
+
508 phytomer_parameters.leaf.roll = 0;
+
509 phytomer_parameters.leaf.leaflet_offset = 0;
+
510 phytomer_parameters.leaf.leaflet_scale = 0.9;
+
511 phytomer_parameters.leaf.prototype_function = AsparagusLeafPrototype;
+
512 phytomer_parameters.leaf.prototype_scale.uniformDistribution(0.018, 0.02);
+
513// phytomer_parameters.leaf.subdivisions = 6;
+
514
+
515 phytomer_parameters.peduncle.length = 0.17;
+
516 phytomer_parameters.peduncle.radius = 0.0015;
+
517 phytomer_parameters.peduncle.pitch.uniformDistribution(0, 30);
+
518 phytomer_parameters.peduncle.roll = 90;
+
519 phytomer_parameters.peduncle.curvature.uniformDistribution(50, 250);
+
520 phytomer_parameters.peduncle.length_segments = 6;
+
521 phytomer_parameters.peduncle.radial_subdivisions = 6;
+
522
+
523 phytomer_parameters.inflorescence.flowers_per_peduncle.uniformDistribution(1, 3);
+
524 phytomer_parameters.inflorescence.flower_offset = 0.;
+
525 phytomer_parameters.inflorescence.pitch.uniformDistribution(50, 70);
+
526 phytomer_parameters.inflorescence.roll.uniformDistribution(-20, 20);
+
527 phytomer_parameters.inflorescence.flower_prototype_scale = 0.015;
+
528 phytomer_parameters.inflorescence.fruit_prototype_scale.uniformDistribution(0.02, 0.025);
+
529 phytomer_parameters.inflorescence.fruit_gravity_factor_fraction.uniformDistribution(0., 0.5);
+
530
+
531 // ---- Shoot Parameters ---- //
+
532
+
533 ShootParameters shoot_parameters(context_ptr->getRandomGenerator());
+
534 shoot_parameters.phytomer_parameters = phytomer_parameters;
+
535 shoot_parameters.phytomer_parameters.phytomer_creation_function = AsparagusPhytomerCreationFunction;
+
536
+
537 shoot_parameters.max_nodes = 20;
+
538 shoot_parameters.internode_radius_initial = 0.0001;
+
539 shoot_parameters.internode_radius_max = 0.0003;
+
540 shoot_parameters.insertion_angle_tip.uniformDistribution(40, 70);
+
541// shoot_parameters.child_insertion_angle_decay_rate = 0; (default)
+
542 shoot_parameters.internode_length_max = 0.015;
+
543// shoot_parameters.child_internode_length_min = 0.0; (default)
+
544// shoot_parameters.child_internode_length_decay_rate = 0; (default)
+
545 shoot_parameters.base_roll = 90;
+
546 shoot_parameters.base_yaw.uniformDistribution(-20, 20);
+
547 shoot_parameters.gravitropic_curvature = -200;
+
548
+
549 shoot_parameters.phyllochron = 1;
+
550// shoot_parameters.leaf_flush_count = 1; (default)
+
551 shoot_parameters.elongation_rate = 0.15;
+
552// shoot_parameters.girth_growth_rate = 0.00005;
+
553 shoot_parameters.girth_area_factor = 30;
+
554 shoot_parameters.vegetative_bud_break_time = 5;
+
555 shoot_parameters.vegetative_bud_break_probability = 0.25;
+
556// shoot_parameters.max_terminal_floral_buds = 0; (default)
+
557// shoot_parameters.flower_bud_break_probability.uniformDistribution(0.1, 0.2);
+
558 shoot_parameters.fruit_set_probability = 0.;
+
559// shoot_parameters.flowers_require_dormancy = false; (default)
+
560// shoot_parameters.growth_requires_dormancy = false; (default)
+
561// shoot_parameters.determinate_shoot_growth = true; (default)
+
562
+
563 shoot_parameters.defineChildShootTypes({"main"}, {1.0});
+
564
+
565 defineShootType("main", shoot_parameters);
+
566
+
567}
+
568
+
569uint PlantArchitecture::buildAsparagusPlant(const helios::vec3 &base_position) {
+
570
+
571 if (shoot_types.empty()) {
+
572 //automatically initialize asparagus plant shoots
+
573 initializeAsparagusShoots();
+
574 }
+
575
+
576 uint plantID = addPlantInstance(base_position, 0);
+
577
+
578 uint uID_stem = addBaseStemShoot(plantID, 1, make_AxisRotation(0, 0.f, 0.f), 0.0003, 0.015, 1, 0.1, 0.1, "main");
+
579
+
580 breakPlantDormancy(plantID);
+
581
+
582 setPlantPhenologicalThresholds(plantID, 0, -1, -1, -1, 5, 100, false);
+
583
+
584 return plantID;
+
585
+
586}
587
-
588 // ---- Shoot Parameters ---- //
+
588void PlantArchitecture::initializeBindweedShoots() {
589
-
590 ShootParameters shoot_parameters_trifoliate(context_ptr->getRandomGenerator());
-
591 shoot_parameters_trifoliate.phytomer_parameters = phytomer_parameters_trifoliate;
-
592 shoot_parameters_trifoliate.phytomer_parameters.phytomer_creation_function = BeanPhytomerCreationFunction;
+
590 // ---- Phytomer Parameters ---- //
+
591
+
592 PhytomerParameters phytomer_parameters_bindweed(context_ptr->getRandomGenerator());
593
-
594 shoot_parameters_trifoliate.max_nodes = 25;
-
595 shoot_parameters_trifoliate.internode_radius_initial = 0.0005;
-
596 shoot_parameters_trifoliate.internode_radius_max = 0.003;
-
597 shoot_parameters_trifoliate.insertion_angle_tip.uniformDistribution(40,60);
-
598// shoot_parameters_trifoliate.child_insertion_angle_decay_rate = 0; (default)
-
599 shoot_parameters_trifoliate.internode_length_max = 0.03;
-
600// shoot_parameters_trifoliate.child_internode_length_min = 0.0; (default)
-
601// shoot_parameters_trifoliate.child_internode_length_decay_rate = 0; (default)
-
602 shoot_parameters_trifoliate.base_roll = 90;
-
603 shoot_parameters_trifoliate.base_yaw.uniformDistribution(-20,20);
-
604 shoot_parameters_trifoliate.gravitropic_curvature = 300;
-
605
-
606 shoot_parameters_trifoliate.phyllochron = 1;
-
607// shoot_parameters_trifoliate.leaf_flush_count = 1; (default)
-
608 shoot_parameters_trifoliate.elongation_rate = 0.1;
-
609 shoot_parameters_trifoliate.girth_growth_rate = 0.0003;
-
610 shoot_parameters_trifoliate.vegetative_bud_break_time = 3;
-
611 shoot_parameters_trifoliate.vegetative_bud_break_probability = 0.25;
-
612// shoot_parameters_trifoliate.max_terminal_floral_buds = 0; (default)
-
613 shoot_parameters_trifoliate.flower_bud_break_probability.uniformDistribution(0.8,1.0);
-
614 shoot_parameters_trifoliate.fruit_set_probability = 0.4;
-
615// shoot_parameters_trifoliate.flowers_require_dormancy = false; (default)
-
616// shoot_parameters_trifoliate.growth_requires_dormancy = false; (default)
-
617// shoot_parameters_trifoliate.determinate_shoot_growth = true; (default)
-
618
-
619 shoot_parameters_trifoliate.defineChildShootTypes({"trifoliate"},{1.0});
+
594 phytomer_parameters_bindweed.internode.pitch.uniformDistribution(0,15);
+
595 phytomer_parameters_bindweed.internode.phyllotactic_angle = 180.f;
+
596 phytomer_parameters_bindweed.internode.color = make_RGBcolor(0.64, 0.71, 0.53);
+
597 phytomer_parameters_bindweed.internode.length_segments = 1;
+
598
+
599 phytomer_parameters_bindweed.petiole.petioles_per_internode = 1;
+
600 phytomer_parameters_bindweed.petiole.pitch.uniformDistribution(80, 100);
+
601 phytomer_parameters_bindweed.petiole.radius = 0.001;
+
602 phytomer_parameters_bindweed.petiole.length = 0.005;
+
603 phytomer_parameters_bindweed.petiole.taper = 0;
+
604 phytomer_parameters_bindweed.petiole.curvature = 0;
+
605 phytomer_parameters_bindweed.petiole.color = phytomer_parameters_bindweed.internode.color;
+
606 phytomer_parameters_bindweed.petiole.length_segments = 1;
+
607
+
608 phytomer_parameters_bindweed.leaf.leaves_per_petiole = 1;
+
609 phytomer_parameters_bindweed.leaf.pitch.uniformDistribution(5, 30);
+
610 phytomer_parameters_bindweed.leaf.yaw = 0;
+
611 phytomer_parameters_bindweed.leaf.roll = 90;
+
612 phytomer_parameters_bindweed.leaf.prototype_function = BindweedLeafPrototype;
+
613 phytomer_parameters_bindweed.leaf.prototype_scale = 0.04;
+
614
+
615 phytomer_parameters_bindweed.peduncle.length = 0.001;
+
616 phytomer_parameters_bindweed.inflorescence.flowers_per_peduncle = 1;
+
617 phytomer_parameters_bindweed.inflorescence.pitch = -90.f;
+
618 phytomer_parameters_bindweed.inflorescence.flower_prototype_function = BindweedFlowerPrototype;
+
619 phytomer_parameters_bindweed.inflorescence.flower_prototype_scale = 0.03;
620
-
621
-
622 ShootParameters shoot_parameters_unifoliate = shoot_parameters_trifoliate;
-
623 shoot_parameters_unifoliate.phytomer_parameters = phytomer_parameters_unifoliate;
-
624 shoot_parameters_unifoliate.max_nodes = 1;
-
625 shoot_parameters_unifoliate.vegetative_bud_break_probability = 0;
-
626 shoot_parameters_unifoliate.flower_bud_break_probability = 0;
-
627 shoot_parameters_unifoliate.insertion_angle_tip = 0;
-
628 shoot_parameters_unifoliate.insertion_angle_decay_rate = 0;
-
629 shoot_parameters_unifoliate.vegetative_bud_break_time = 1;
-
630 shoot_parameters_unifoliate.defineChildShootTypes({"trifoliate"},{1.0});
-
631
-
632 defineShootType("unifoliate",shoot_parameters_unifoliate);
-
633 defineShootType("trifoliate",shoot_parameters_trifoliate);
-
634
-
635
-
636}
-
637
-
638uint PlantArchitecture::buildBeanPlant(const helios::vec3 &base_position, float age) {
-
639
-
640 if (shoot_types.empty()) {
-
641 //automatically initialize bean plant shoots
-
642 initializeBeanShoots();
-
643 }
-
644
-
645 uint plantID = addPlantInstance(base_position, age);
-
646
-
647 AxisRotation base_rotation = make_AxisRotation(context_ptr->randu(0.f, 0.05f * M_PI), context_ptr->randu(0.f, 2.f * M_PI), context_ptr->randu(0.f, 2.f * M_PI));
-
648 uint uID_unifoliate = addBaseStemShoot(plantID, 1, base_rotation, 0.0005, 0.01, 0.01, 0.01, 0, "unifoliate");
-
649
-
650 appendShoot(plantID, uID_unifoliate, 1, make_AxisRotation(0, 0, 0.5f * M_PI), shoot_types.at("trifoliate").internode_radius_initial.val(), shoot_types.at("trifoliate").internode_length_max.val(), 0.1, 0.1, 0, "trifoliate");
-
651
-
652 breakPlantDormancy(plantID);
-
653
-
654 setPlantPhenologicalThresholds(plantID, 0, 15, 3, 3, 5, 100);
-
655
-
656 return plantID;
-
657
-
658}
-
659
-
660void PlantArchitecture::initializeCheeseweedShoots() {
-
661
-
662 // ---- Phytomer Parameters ---- //
-
663
-
664 PhytomerParameters phytomer_parameters_cheeseweed(context_ptr->getRandomGenerator());
-
665
-
666 phytomer_parameters_cheeseweed.internode.pitch = 0;
-
667 phytomer_parameters_cheeseweed.internode.phyllotactic_angle.uniformDistribution( 127.5f, 147.5);
-
668 phytomer_parameters_cheeseweed.internode.color = make_RGBcolor(0.60, 0.65, 0.40);
-
669 phytomer_parameters_cheeseweed.internode.length_segments = 1;
+
621 // ---- Shoot Parameters ---- //
+
622
+
623 ShootParameters shoot_parameters_primary(context_ptr->getRandomGenerator());
+
624 shoot_parameters_primary.phytomer_parameters = phytomer_parameters_bindweed;
+
625 shoot_parameters_primary.vegetative_bud_break_probability = 0.25;
+
626 shoot_parameters_primary.vegetative_bud_break_time = 1;
+
627 shoot_parameters_primary.base_roll = 90;
+
628 shoot_parameters_primary.internode_radius_initial = 0.001;
+
629 shoot_parameters_primary.phyllochron = 1;
+
630 shoot_parameters_primary.elongation_rate = 0.25;
+
631 shoot_parameters_primary.girth_area_factor = 0;
+
632 shoot_parameters_primary.internode_length_max = 0.03;
+
633 shoot_parameters_primary.internode_length_decay_rate = 0;
+
634 shoot_parameters_primary.insertion_angle_tip.uniformDistribution(50, 80);
+
635 shoot_parameters_primary.flowers_require_dormancy = false;
+
636 shoot_parameters_primary.growth_requires_dormancy = false;
+
637 shoot_parameters_primary.flower_bud_break_probability = 0.2;
+
638 shoot_parameters_primary.determinate_shoot_growth = false;
+
639 shoot_parameters_primary.max_nodes = 15;
+
640 shoot_parameters_primary.gravitropic_curvature = 20;
+
641 shoot_parameters_primary.tortuosity = 0;
+
642 shoot_parameters_primary.defineChildShootTypes({"secondary_bindweed"}, {1.f});
+
643
+
644 ShootParameters shoot_parameters_base = shoot_parameters_primary;
+
645 shoot_parameters_base.phytomer_parameters = phytomer_parameters_bindweed;
+
646 shoot_parameters_base.phytomer_parameters.internode.phyllotactic_angle.uniformDistribution(137.5-10,137.5+10);
+
647 shoot_parameters_base.phytomer_parameters.petiole.petioles_per_internode = 0;
+
648 shoot_parameters_base.phytomer_parameters.internode.pitch = 0;
+
649 shoot_parameters_base.phytomer_parameters.petiole.pitch = 0;
+
650 shoot_parameters_base.vegetative_bud_break_probability = 1.0;
+
651 shoot_parameters_base.vegetative_bud_break_time = 1;
+
652 shoot_parameters_base.internode_radius_initial = 0.01;
+
653 shoot_parameters_base.phyllochron = 1;
+
654 shoot_parameters_base.elongation_rate = 0.25;
+
655 shoot_parameters_base.girth_area_factor = 0.f;
+
656 shoot_parameters_base.gravitropic_curvature = 0;
+
657 shoot_parameters_base.internode_length_max = 0.01;
+
658 shoot_parameters_base.internode_length_decay_rate = 0;
+
659 shoot_parameters_base.insertion_angle_tip = 95;
+
660 shoot_parameters_base.insertion_angle_decay_rate = 0;
+
661 shoot_parameters_base.internode_radius_initial = 0.001;
+
662 shoot_parameters_base.flowers_require_dormancy = false;
+
663 shoot_parameters_base.growth_requires_dormancy = false;
+
664 shoot_parameters_base.flower_bud_break_probability = 0.0;
+
665 shoot_parameters_base.max_nodes.uniformDistribution(3,5);
+
666 shoot_parameters_base.defineChildShootTypes({"primary_bindweed"},{1.f});
+
667
+
668 ShootParameters shoot_parameters_children = shoot_parameters_primary;
+
669 shoot_parameters_children.base_roll = 90;
670
-
671 phytomer_parameters_cheeseweed.petiole.petioles_per_internode = 1;
-
672 phytomer_parameters_cheeseweed.petiole.pitch.uniformDistribution(45, 75);
-
673 phytomer_parameters_cheeseweed.petiole.radius = 0.00075;
-
674 phytomer_parameters_cheeseweed.petiole.length.uniformDistribution(0.02,0.06);
-
675 phytomer_parameters_cheeseweed.petiole.taper = 0;
-
676 phytomer_parameters_cheeseweed.petiole.curvature = -300;
-
677 phytomer_parameters_cheeseweed.petiole.length_segments = 5;
-
678 phytomer_parameters_cheeseweed.petiole.color = phytomer_parameters_cheeseweed.internode.color;
-
679
-
680 phytomer_parameters_cheeseweed.leaf.leaves_per_petiole = 1;
-
681 phytomer_parameters_cheeseweed.leaf.pitch.uniformDistribution(-30, 0);
-
682 phytomer_parameters_cheeseweed.leaf.yaw = 0;
-
683 phytomer_parameters_cheeseweed.leaf.roll = 0;
-
684 phytomer_parameters_cheeseweed.leaf.prototype_function = CheeseweedLeafPrototype;
-
685 phytomer_parameters_cheeseweed.leaf.prototype_scale = 0.035;
-
686
-
687 // ---- Shoot Parameters ---- //
-
688
-
689 ShootParameters shoot_parameters_base(context_ptr->getRandomGenerator());
-
690 shoot_parameters_base.phytomer_parameters = phytomer_parameters_cheeseweed;
-
691 shoot_parameters_base.vegetative_bud_break_probability = 0.2;
-
692 shoot_parameters_base.vegetative_bud_break_time = 3;
-
693 shoot_parameters_base.internode_radius_initial = 0.0005;
-
694 shoot_parameters_base.internode_radius_max = 0.001;
-
695 shoot_parameters_base.phyllochron = 1;
-
696 shoot_parameters_base.elongation_rate = 0.2;
-
697 shoot_parameters_base.girth_growth_rate = 0.0002;
-
698 shoot_parameters_base.gravitropic_curvature = 0;
-
699 shoot_parameters_base.internode_length_max = 0.0015;
-
700 shoot_parameters_base.internode_length_decay_rate = 0;
-
701 shoot_parameters_base.flowers_require_dormancy = false;
-
702 shoot_parameters_base.growth_requires_dormancy = false;
-
703 shoot_parameters_base.flower_bud_break_probability = 0.;
-
704 shoot_parameters_base.max_nodes = 8;
-
705
-
706 defineShootType("base", shoot_parameters_base);
-
707
-
708}
-
709
-
710uint PlantArchitecture::buildCheeseweedPlant(const helios::vec3 &base_position, float age) {
-
711
-
712 if (shoot_types.empty()) {
-
713 //automatically initialize cheeseweed plant shoots
-
714 initializeCheeseweedShoots();
-
715 }
+
671 defineShootType("base_bindweed", shoot_parameters_base);
+
672 defineShootType("primary_bindweed", shoot_parameters_primary);
+
673 defineShootType("secondary_bindweed", shoot_parameters_children);
+
674
+
675}
+
676
+
677uint PlantArchitecture::buildBindweedPlant(const helios::vec3 &base_position) {
+
678
+
679 if (shoot_types.empty()) {
+
680 //automatically initialize bindweed plant shoots
+
681 initializeBindweedShoots();
+
682 }
+
683
+
684 uint plantID = addPlantInstance(base_position, 0);
+
685
+
686 uint uID_stem = addBaseStemShoot(plantID, 3, make_AxisRotation(0, 0.f, 0.f), 0.001, 0.001, 1, 1, 0, "base_bindweed");
+
687
+
688 breakPlantDormancy(plantID);
+
689
+
690 setPlantPhenologicalThresholds(plantID, 0, -1, 7, 1000, 5, 100, false);
+
691
+
692 return plantID;
+
693
+
694}
+
695
+
696void PlantArchitecture::initializeBeanShoots() {
+
697
+
698 PhytomerParameters phytomer_parameters_trifoliate(context_ptr->getRandomGenerator());
+
699
+
700 phytomer_parameters_trifoliate.internode.pitch = 20;
+
701 phytomer_parameters_trifoliate.internode.phyllotactic_angle.uniformDistribution(145, 215);
+
702 phytomer_parameters_trifoliate.internode.max_floral_buds_per_petiole = 1;
+
703 phytomer_parameters_trifoliate.internode.max_vegetative_buds_per_petiole = 1;
+
704 phytomer_parameters_trifoliate.internode.color = make_RGBcolor(0.2,0.25,0.05);
+
705 phytomer_parameters_trifoliate.internode.length_segments = 5;
+
706
+
707 phytomer_parameters_trifoliate.petiole.petioles_per_internode = 1;
+
708 phytomer_parameters_trifoliate.petiole.pitch.uniformDistribution(30,70);
+
709 phytomer_parameters_trifoliate.petiole.radius = 0.0025;
+
710 phytomer_parameters_trifoliate.petiole.length.uniformDistribution(0.12,0.16);
+
711 phytomer_parameters_trifoliate.petiole.taper = 0.25;
+
712 phytomer_parameters_trifoliate.petiole.curvature.uniformDistribution(-100,200);
+
713 phytomer_parameters_trifoliate.petiole.color = make_RGBcolor(0.28,0.35,0.07);
+
714 phytomer_parameters_trifoliate.petiole.length_segments = 5;
+
715 phytomer_parameters_trifoliate.petiole.radial_subdivisions = 6;
716
-
717 uint plantID = addPlantInstance(base_position, age);
-
718
-
719 uint uID_stem = addBaseStemShoot(plantID, 1, make_AxisRotation(0, 0.f, 0.f), 0.0001, 0.0025, 0.1, 0.1, 0, "base");
-
720
-
721 breakPlantDormancy(plantID);
-
722
-
723 setPlantPhenologicalThresholds(plantID, 0, 1000, 3, 1000, 5, 100);
-
724
-
725 return plantID;
-
726
-
727}
-
728
-
729void PlantArchitecture::initializeCowpeaShoots() {
-
730
-
731 // ---- Phytomer Parameters ---- //
-
732
-
733 PhytomerParameters phytomer_parameters_trifoliate(context_ptr->getRandomGenerator());
-
734
-
735 phytomer_parameters_trifoliate.internode.pitch = 20;
-
736 phytomer_parameters_trifoliate.internode.phyllotactic_angle.uniformDistribution(145, 215);
-
737 phytomer_parameters_trifoliate.internode.max_floral_buds_per_petiole = 1;
-
738 phytomer_parameters_trifoliate.internode.max_vegetative_buds_per_petiole = 1;
-
739 phytomer_parameters_trifoliate.internode.color = make_RGBcolor(0.15, 0.2, 0.1);
-
740 phytomer_parameters_trifoliate.internode.length_segments = 2;
-
741
-
742 phytomer_parameters_trifoliate.petiole.petioles_per_internode = 1;
-
743 phytomer_parameters_trifoliate.petiole.pitch.uniformDistribution(45,60);
-
744 phytomer_parameters_trifoliate.petiole.radius = 0.0015;
-
745 phytomer_parameters_trifoliate.petiole.length.uniformDistribution(0.08,0.1);
-
746 phytomer_parameters_trifoliate.petiole.taper = 0.25;
-
747 phytomer_parameters_trifoliate.petiole.curvature.uniformDistribution(-200,-50);
-
748 phytomer_parameters_trifoliate.petiole.color = make_RGBcolor(0.17,0.25,0.07);
-
749 phytomer_parameters_trifoliate.petiole.length_segments = 5;
-
750 phytomer_parameters_trifoliate.petiole.radial_subdivisions = 6;
-
751
-
752 phytomer_parameters_trifoliate.leaf.leaves_per_petiole = 3;
-
753 phytomer_parameters_trifoliate.leaf.pitch.normalDistribution(0, 10);
-
754 phytomer_parameters_trifoliate.leaf.yaw = 10;
-
755 phytomer_parameters_trifoliate.leaf.roll = -15;
-
756 phytomer_parameters_trifoliate.leaf.leaflet_offset = 0.4;
-
757 phytomer_parameters_trifoliate.leaf.leaflet_scale = 0.9;
-
758 phytomer_parameters_trifoliate.leaf.prototype_function = CowpeaLeafPrototype_trifoliate;
-
759 phytomer_parameters_trifoliate.leaf.prototype_scale.uniformDistribution(0.09,0.1);
-
760 phytomer_parameters_trifoliate.leaf.subdivisions = 6;
-
761 phytomer_parameters_trifoliate.leaf.unique_prototypes = 5;
-
762
-
763 phytomer_parameters_trifoliate.peduncle.length = 0.17;
-
764 phytomer_parameters_trifoliate.peduncle.radius = 0.0015;
-
765 phytomer_parameters_trifoliate.peduncle.pitch.uniformDistribution(0, 30);
-
766 phytomer_parameters_trifoliate.peduncle.roll = 90;
-
767 phytomer_parameters_trifoliate.peduncle.curvature.uniformDistribution(50, 250);
-
768 phytomer_parameters_trifoliate.peduncle.color = make_RGBcolor(0.15, 0.25, 0.1);
-
769 phytomer_parameters_trifoliate.peduncle.length_segments = 6;
-
770 phytomer_parameters_trifoliate.peduncle.radial_subdivisions = 6;
-
771
-
772 phytomer_parameters_trifoliate.inflorescence.flowers_per_rachis = 3;//.uniformDistribution(1, 3);
-
773 phytomer_parameters_trifoliate.inflorescence.flower_offset = 0.;
-
774 phytomer_parameters_trifoliate.inflorescence.flower_arrangement_pattern = "opposite";
-
775 phytomer_parameters_trifoliate.inflorescence.pitch.uniformDistribution(50,70);
-
776 phytomer_parameters_trifoliate.inflorescence.roll.uniformDistribution(-20,20);
-
777 phytomer_parameters_trifoliate.inflorescence.flower_prototype_scale = 0.015;
-
778 phytomer_parameters_trifoliate.inflorescence.flower_prototype_function = CowpeaFlowerPrototype;
-
779 phytomer_parameters_trifoliate.inflorescence.fruit_prototype_scale.uniformDistribution(0.02,0.025);
-
780 phytomer_parameters_trifoliate.inflorescence.fruit_prototype_function = CowpeaFruitPrototype;
-
781 phytomer_parameters_trifoliate.inflorescence.fruit_gravity_factor_fraction.uniformDistribution(0.,0.5);
-
782
-
783 PhytomerParameters phytomer_parameters_unifoliate = phytomer_parameters_trifoliate;
-
784 phytomer_parameters_unifoliate.internode.pitch = 0;
-
785 phytomer_parameters_unifoliate.internode.max_vegetative_buds_per_petiole = 0;
-
786 phytomer_parameters_unifoliate.internode.max_floral_buds_per_petiole = 0;
-
787 phytomer_parameters_unifoliate.petiole.petioles_per_internode = 2;
-
788 phytomer_parameters_unifoliate.petiole.length = 0.001;
-
789 phytomer_parameters_unifoliate.petiole.radius = 0.0004;
-
790 phytomer_parameters_unifoliate.petiole.pitch.uniformDistribution(60,80);
-
791 phytomer_parameters_unifoliate.leaf.leaves_per_petiole = 1;
-
792 phytomer_parameters_unifoliate.leaf.prototype_scale = 0.01;
-
793 phytomer_parameters_unifoliate.leaf.pitch.uniformDistribution(-10, 10);
-
794 phytomer_parameters_unifoliate.leaf.prototype_function = CowpeaLeafPrototype_unifoliate;
-
795
-
796 // ---- Shoot Parameters ---- //
-
797
-
798 ShootParameters shoot_parameters_trifoliate(context_ptr->getRandomGenerator());
-
799 shoot_parameters_trifoliate.phytomer_parameters = phytomer_parameters_trifoliate;
-
800 shoot_parameters_trifoliate.phytomer_parameters.phytomer_creation_function = CowpeaPhytomerCreationFunction;
-
801
-
802 shoot_parameters_trifoliate.max_nodes = 20;
-
803 shoot_parameters_trifoliate.internode_radius_initial = 0.00025;
-
804 shoot_parameters_trifoliate.internode_radius_max = 0.0025;
-
805 shoot_parameters_trifoliate.insertion_angle_tip.uniformDistribution(40,70);
-
806// shoot_parameters_trifoliate.child_insertion_angle_decay_rate = 0; (default)
-
807 shoot_parameters_trifoliate.internode_length_max = 0.02;
-
808// shoot_parameters_trifoliate.child_internode_length_min = 0.0; (default)
-
809// shoot_parameters_trifoliate.child_internode_length_decay_rate = 0; (default)
-
810 shoot_parameters_trifoliate.base_roll = 90;
-
811 shoot_parameters_trifoliate.base_yaw.uniformDistribution(-20,20);
-
812 shoot_parameters_trifoliate.gravitropic_curvature = 200;
-
813
-
814 shoot_parameters_trifoliate.phyllochron = 1;
-
815// shoot_parameters_trifoliate.leaf_flush_count = 1; (default)
-
816 shoot_parameters_trifoliate.elongation_rate = 0.1;
-
817 shoot_parameters_trifoliate.girth_growth_rate = 0.0003;
-
818 shoot_parameters_trifoliate.vegetative_bud_break_time = 3;
-
819 shoot_parameters_trifoliate.vegetative_bud_break_probability = 0.5;
-
820// shoot_parameters_trifoliate.max_terminal_floral_buds = 0; (default)
-
821 shoot_parameters_trifoliate.flower_bud_break_probability.uniformDistribution(0.1,0.2);
-
822 shoot_parameters_trifoliate.fruit_set_probability = 0.5;
-
823// shoot_parameters_trifoliate.flowers_require_dormancy = false; (default)
-
824// shoot_parameters_trifoliate.growth_requires_dormancy = false; (default)
-
825// shoot_parameters_trifoliate.determinate_shoot_growth = true; (default)
-
826
-
827 shoot_parameters_trifoliate.defineChildShootTypes({"trifoliate"},{1.0});
-
828
+
717 phytomer_parameters_trifoliate.leaf.leaves_per_petiole = 3;
+
718 phytomer_parameters_trifoliate.leaf.pitch.normalDistribution(0, 20);
+
719 phytomer_parameters_trifoliate.leaf.yaw = 10;
+
720 phytomer_parameters_trifoliate.leaf.roll = -15;
+
721 phytomer_parameters_trifoliate.leaf.leaflet_offset = 0.2;
+
722 phytomer_parameters_trifoliate.leaf.leaflet_scale = 0.9;
+
723 phytomer_parameters_trifoliate.leaf.prototype_function = BeanLeafPrototype_trifoliate;
+
724 phytomer_parameters_trifoliate.leaf.prototype_scale.uniformDistribution(0.09,0.11);
+
725 phytomer_parameters_trifoliate.leaf.subdivisions = 12;
+
726 phytomer_parameters_trifoliate.leaf.unique_prototypes = 5;
+
727
+
728 phytomer_parameters_trifoliate.peduncle.length = 0.04;
+
729 phytomer_parameters_trifoliate.peduncle.radius = 0.00075;
+
730 phytomer_parameters_trifoliate.peduncle.pitch.uniformDistribution(0, 40);
+
731 phytomer_parameters_trifoliate.peduncle.roll = 90;
+
732 phytomer_parameters_trifoliate.peduncle.curvature.uniformDistribution(-500, 500);
+
733 phytomer_parameters_trifoliate.peduncle.length_segments = 1;
+
734 phytomer_parameters_trifoliate.peduncle.radial_subdivisions = 6;
+
735
+
736 phytomer_parameters_trifoliate.inflorescence.flowers_per_peduncle.uniformDistribution(1, 4);
+
737 phytomer_parameters_trifoliate.inflorescence.flower_offset = 0.2;
+
738 phytomer_parameters_trifoliate.inflorescence.pitch.uniformDistribution(50,70);
+
739 phytomer_parameters_trifoliate.inflorescence.roll.uniformDistribution(-20,20);
+
740 phytomer_parameters_trifoliate.inflorescence.flower_prototype_scale = 0.015;
+
741 phytomer_parameters_trifoliate.inflorescence.flower_prototype_function = BeanFlowerPrototype;
+
742 phytomer_parameters_trifoliate.inflorescence.fruit_prototype_scale.uniformDistribution(0.08,0.1);
+
743 phytomer_parameters_trifoliate.inflorescence.fruit_prototype_function = BeanFruitPrototype;
+
744 phytomer_parameters_trifoliate.inflorescence.fruit_gravity_factor_fraction.uniformDistribution(0.8,1.0);
+
745
+
746 PhytomerParameters phytomer_parameters_unifoliate = phytomer_parameters_trifoliate;
+
747 phytomer_parameters_unifoliate.internode.pitch = 0;
+
748 phytomer_parameters_unifoliate.internode.max_vegetative_buds_per_petiole = 0;
+
749 phytomer_parameters_unifoliate.internode.max_floral_buds_per_petiole = 0;
+
750 phytomer_parameters_unifoliate.petiole.petioles_per_internode = 2;
+
751 phytomer_parameters_unifoliate.petiole.length = 0.001;
+
752 phytomer_parameters_unifoliate.petiole.radius = 0.0004;
+
753 phytomer_parameters_unifoliate.petiole.pitch.uniformDistribution(50,70);
+
754 phytomer_parameters_unifoliate.leaf.leaves_per_petiole = 1;
+
755 phytomer_parameters_unifoliate.leaf.prototype_scale = 0.02;
+
756 phytomer_parameters_unifoliate.leaf.pitch.uniformDistribution(-10, 10);
+
757 phytomer_parameters_unifoliate.leaf.prototype_function = BeanLeafPrototype_unifoliate;
+
758
+
759 // ---- Shoot Parameters ---- //
+
760
+
761 ShootParameters shoot_parameters_trifoliate(context_ptr->getRandomGenerator());
+
762 shoot_parameters_trifoliate.phytomer_parameters = phytomer_parameters_trifoliate;
+
763 shoot_parameters_trifoliate.phytomer_parameters.phytomer_creation_function = BeanPhytomerCreationFunction;
+
764
+
765 shoot_parameters_trifoliate.max_nodes = 25;
+
766 shoot_parameters_trifoliate.internode_radius_initial = 0.0005;
+
767 shoot_parameters_trifoliate.internode_radius_max = 0.003;
+
768 shoot_parameters_trifoliate.insertion_angle_tip.uniformDistribution(40,60);
+
769// shoot_parameters_trifoliate.child_insertion_angle_decay_rate = 0; (default)
+
770 shoot_parameters_trifoliate.internode_length_max = 0.03;
+
771// shoot_parameters_trifoliate.child_internode_length_min = 0.0; (default)
+
772// shoot_parameters_trifoliate.child_internode_length_decay_rate = 0; (default)
+
773 shoot_parameters_trifoliate.base_roll = 90;
+
774 shoot_parameters_trifoliate.base_yaw.uniformDistribution(-20,20);
+
775 shoot_parameters_trifoliate.gravitropic_curvature = 300;
+
776
+
777 shoot_parameters_trifoliate.phyllochron = 1;
+
778// shoot_parameters_trifoliate.leaf_flush_count = 1; (default)
+
779 shoot_parameters_trifoliate.elongation_rate = 0.1;
+
780 shoot_parameters_trifoliate.girth_area_factor = 25.f;
+
781 shoot_parameters_trifoliate.vegetative_bud_break_time = 3;
+
782 shoot_parameters_trifoliate.vegetative_bud_break_probability = 0.2;
+
783// shoot_parameters_trifoliate.max_terminal_floral_buds = 0; (default)
+
784 shoot_parameters_trifoliate.flower_bud_break_probability.uniformDistribution(0.8,1.0);
+
785 shoot_parameters_trifoliate.fruit_set_probability = 0.4;
+
786// shoot_parameters_trifoliate.flowers_require_dormancy = false; (default)
+
787// shoot_parameters_trifoliate.growth_requires_dormancy = false; (default)
+
788// shoot_parameters_trifoliate.determinate_shoot_growth = true; (default)
+
789
+
790 shoot_parameters_trifoliate.defineChildShootTypes({"trifoliate"},{1.0});
+
791
+
792
+
793 ShootParameters shoot_parameters_unifoliate = shoot_parameters_trifoliate;
+
794 shoot_parameters_unifoliate.phytomer_parameters = phytomer_parameters_unifoliate;
+
795 shoot_parameters_unifoliate.phytomer_parameters.phytomer_creation_function = nullptr;
+
796 shoot_parameters_unifoliate.max_nodes = 1;
+
797 shoot_parameters_unifoliate.vegetative_bud_break_probability = 0;
+
798 shoot_parameters_unifoliate.flower_bud_break_probability = 0;
+
799 shoot_parameters_unifoliate.insertion_angle_tip = 0;
+
800 shoot_parameters_unifoliate.insertion_angle_decay_rate = 0;
+
801 shoot_parameters_unifoliate.vegetative_bud_break_time = 1;
+
802 shoot_parameters_unifoliate.defineChildShootTypes({"trifoliate"},{1.0});
+
803
+
804 defineShootType("unifoliate",shoot_parameters_unifoliate);
+
805 defineShootType("trifoliate",shoot_parameters_trifoliate);
+
806
+
807
+
808}
+
809
+
810uint PlantArchitecture::buildBeanPlant(const helios::vec3 &base_position) {
+
811
+
812 if (shoot_types.empty()) {
+
813 //automatically initialize bean plant shoots
+
814 initializeBeanShoots();
+
815 }
+
816
+
817 uint plantID = addPlantInstance(base_position, 0);
+
818
+
819 AxisRotation base_rotation = make_AxisRotation(context_ptr->randu(0.f, 0.05f * M_PI), context_ptr->randu(0.f, 2.f * M_PI), context_ptr->randu(0.f, 2.f * M_PI));
+
820 uint uID_unifoliate = addBaseStemShoot(plantID, 1, base_rotation, 0.0005, 0.01, 0.01, 0.01, 0, "unifoliate");
+
821
+
822 appendShoot(plantID, uID_unifoliate, 1, make_AxisRotation(0, 0, 0.5f * M_PI), shoot_types.at("trifoliate").internode_radius_initial.val(), shoot_types.at("trifoliate").internode_length_max.val(), 0.1, 0.1, 0, "trifoliate");
+
823
+
824 breakPlantDormancy(plantID);
+
825
+
826 setPlantPhenologicalThresholds(plantID, 0, 15, 3, 3, 5, 100, false);
+
827
+
828 return plantID;
829
-
830 ShootParameters shoot_parameters_unifoliate = shoot_parameters_trifoliate;
-
831 shoot_parameters_unifoliate.phytomer_parameters = phytomer_parameters_unifoliate;
-
832 shoot_parameters_unifoliate.max_nodes = 1;
-
833 shoot_parameters_unifoliate.vegetative_bud_break_probability = 0;
-
834 shoot_parameters_unifoliate.flower_bud_break_probability = 0;
-
835 shoot_parameters_unifoliate.insertion_angle_tip = 0;
-
836 shoot_parameters_unifoliate.insertion_angle_decay_rate = 0;
-
837 shoot_parameters_unifoliate.vegetative_bud_break_time = 1;
-
838 shoot_parameters_unifoliate.defineChildShootTypes({"trifoliate"},{1.0});
-
839
-
840 defineShootType("unifoliate",shoot_parameters_unifoliate);
-
841 defineShootType("trifoliate",shoot_parameters_trifoliate);
+
830}
+
831
+
832void PlantArchitecture::initializeCheeseweedShoots() {
+
833
+
834 // ---- Phytomer Parameters ---- //
+
835
+
836 PhytomerParameters phytomer_parameters_cheeseweed(context_ptr->getRandomGenerator());
+
837
+
838 phytomer_parameters_cheeseweed.internode.pitch = 0;
+
839 phytomer_parameters_cheeseweed.internode.phyllotactic_angle.uniformDistribution( 127.5f, 147.5);
+
840 phytomer_parameters_cheeseweed.internode.color = make_RGBcolor(0.60, 0.65, 0.40);
+
841 phytomer_parameters_cheeseweed.internode.length_segments = 1;
842
-
843}
-
844
-
845uint PlantArchitecture::buildCowpeaPlant(const helios::vec3 &base_position, float age) {
-
846
-
847 if (shoot_types.empty()) {
-
848 //automatically initialize cowpea plant shoots
-
849 initializeCowpeaShoots();
-
850 }
+
843 phytomer_parameters_cheeseweed.petiole.petioles_per_internode = 1;
+
844 phytomer_parameters_cheeseweed.petiole.pitch.uniformDistribution(45, 75);
+
845 phytomer_parameters_cheeseweed.petiole.radius = 0.00075;
+
846 phytomer_parameters_cheeseweed.petiole.length.uniformDistribution(0.02,0.06);
+
847 phytomer_parameters_cheeseweed.petiole.taper = 0;
+
848 phytomer_parameters_cheeseweed.petiole.curvature = -300;
+
849 phytomer_parameters_cheeseweed.petiole.length_segments = 5;
+
850 phytomer_parameters_cheeseweed.petiole.color = phytomer_parameters_cheeseweed.internode.color;
851
-
852 uint plantID = addPlantInstance(base_position, age);
-
853
-
854 AxisRotation base_rotation = make_AxisRotation(context_ptr->randu(0.f, 0.05f * M_PI), context_ptr->randu(0.f, 2.f * M_PI), context_ptr->randu(0.f, 2.f * M_PI));
-
855 uint uID_unifoliate = addBaseStemShoot(plantID, 1, base_rotation, 0.0005, 0.02, 0.01, 0.01, 0, "unifoliate");
-
856
-
857 appendShoot(plantID, uID_unifoliate, 1, make_AxisRotation(0, 0, 0.5f * M_PI), shoot_types.at("trifoliate").internode_radius_initial.val(), shoot_types.at("trifoliate").internode_length_max.val(), 0.1, 0.1, 0, "trifoliate");
+
852 phytomer_parameters_cheeseweed.leaf.leaves_per_petiole = 1;
+
853 phytomer_parameters_cheeseweed.leaf.pitch.uniformDistribution(-30, 0);
+
854 phytomer_parameters_cheeseweed.leaf.yaw = 0;
+
855 phytomer_parameters_cheeseweed.leaf.roll = 0;
+
856 phytomer_parameters_cheeseweed.leaf.prototype_function = CheeseweedLeafPrototype;
+
857 phytomer_parameters_cheeseweed.leaf.prototype_scale = 0.035;
858
-
859 breakPlantDormancy(plantID);
+
859 // ---- Shoot Parameters ---- //
860
-
861 setPlantPhenologicalThresholds(plantID, 0, 16, 3, 3, 5, 100);
-
862
-
863 return plantID;
-
864
-
865}
-
866
-
867void PlantArchitecture::initializePuncturevineShoots() {
-
868
-
869 // ---- Phytomer Parameters ---- //
-
870
-
871 PhytomerParameters phytomer_parameters_puncturevine(context_ptr->getRandomGenerator());
-
872
-
873 phytomer_parameters_puncturevine.internode.pitch.uniformDistribution(0,15);
-
874 phytomer_parameters_puncturevine.internode.phyllotactic_angle = 180.f;
-
875 phytomer_parameters_puncturevine.internode.color = make_RGBcolor(0.55, 0.52, 0.39);
-
876 phytomer_parameters_puncturevine.internode.length_segments = 1;
+
861 ShootParameters shoot_parameters_base(context_ptr->getRandomGenerator());
+
862 shoot_parameters_base.phytomer_parameters = phytomer_parameters_cheeseweed;
+
863 shoot_parameters_base.vegetative_bud_break_probability = 0.2;
+
864 shoot_parameters_base.vegetative_bud_break_time = 3;
+
865 shoot_parameters_base.internode_radius_initial = 0.0005;
+
866 shoot_parameters_base.internode_radius_max = 0.001;
+
867 shoot_parameters_base.phyllochron = 1;
+
868 shoot_parameters_base.elongation_rate = 0.2;
+
869 shoot_parameters_base.girth_area_factor = 20.f;
+
870 shoot_parameters_base.gravitropic_curvature = 0;
+
871 shoot_parameters_base.internode_length_max = 0.0015;
+
872 shoot_parameters_base.internode_length_decay_rate = 0;
+
873 shoot_parameters_base.flowers_require_dormancy = false;
+
874 shoot_parameters_base.growth_requires_dormancy = false;
+
875 shoot_parameters_base.flower_bud_break_probability = 0.;
+
876 shoot_parameters_base.max_nodes = 8;
877
-
878 phytomer_parameters_puncturevine.petiole.petioles_per_internode = 1;
-
879 phytomer_parameters_puncturevine.petiole.pitch.uniformDistribution(80, 100);
-
880 phytomer_parameters_puncturevine.petiole.radius = 0.0003;
-
881 phytomer_parameters_puncturevine.petiole.length = 0.025;
-
882 phytomer_parameters_puncturevine.petiole.taper = 0;
-
883 phytomer_parameters_puncturevine.petiole.curvature = 0;
-
884 phytomer_parameters_puncturevine.petiole.color = phytomer_parameters_puncturevine.internode.color;
-
885 phytomer_parameters_puncturevine.petiole.length_segments = 1;
-
886
-
887 phytomer_parameters_puncturevine.leaf.leaves_per_petiole = 11;
-
888 phytomer_parameters_puncturevine.leaf.pitch.uniformDistribution(-10,10);
-
889 phytomer_parameters_puncturevine.leaf.yaw = 30;
-
890 phytomer_parameters_puncturevine.leaf.roll.uniformDistribution(-5,5);
-
891 phytomer_parameters_puncturevine.leaf.prototype_function = PuncturevineLeafPrototype;
-
892 phytomer_parameters_puncturevine.leaf.prototype_scale = 0.008;
-
893 phytomer_parameters_puncturevine.leaf.leaflet_offset = 0.15;
-
894 phytomer_parameters_puncturevine.leaf.leaflet_scale = 1;
-
895 phytomer_parameters_puncturevine.leaf.subdivisions = 3;
+
878 defineShootType("base", shoot_parameters_base);
+
879
+
880}
+
881
+
882uint PlantArchitecture::buildCheeseweedPlant(const helios::vec3 &base_position) {
+
883
+
884 if (shoot_types.empty()) {
+
885 //automatically initialize cheeseweed plant shoots
+
886 initializeCheeseweedShoots();
+
887 }
+
888
+
889 uint plantID = addPlantInstance(base_position, 0);
+
890
+
891 uint uID_stem = addBaseStemShoot(plantID, 1, make_AxisRotation(0, 0.f, 0.f), 0.0001, 0.0025, 0.1, 0.1, 0, "base");
+
892
+
893 breakPlantDormancy(plantID);
+
894
+
895 setPlantPhenologicalThresholds(plantID, 0, 1000, 3, 1000, 5, 100, false);
896
-
897 phytomer_parameters_puncturevine.peduncle.length = 0.001;
-
898 phytomer_parameters_puncturevine.inflorescence.flowers_per_rachis = 1;
-
899 phytomer_parameters_puncturevine.inflorescence.pitch = -90.f;
-
900 phytomer_parameters_puncturevine.inflorescence.flower_prototype_function = PuncturevineFlowerPrototype;
-
901 phytomer_parameters_puncturevine.inflorescence.flower_prototype_scale = 0.006;
+
897 return plantID;
+
898
+
899}
+
900
+
901void PlantArchitecture::initializeCowpeaShoots() {
902
-
903 // ---- Shoot Parameters ---- //
+
903 // ---- Phytomer Parameters ---- //
904
-
905 ShootParameters shoot_parameters_primary(context_ptr->getRandomGenerator());
-
906 shoot_parameters_primary.phytomer_parameters = phytomer_parameters_puncturevine;
-
907 shoot_parameters_primary.vegetative_bud_break_probability = 0.3;
-
908 shoot_parameters_primary.vegetative_bud_break_time = 3;
-
909 shoot_parameters_primary.base_roll = 90;
-
910 shoot_parameters_primary.internode_radius_initial = 0.001;
-
911 shoot_parameters_primary.phyllochron = 1;
-
912 shoot_parameters_primary.elongation_rate = 0.2;
-
913 shoot_parameters_primary.girth_growth_rate = 0.;
-
914 shoot_parameters_primary.internode_length_max = 0.02;
-
915 shoot_parameters_primary.internode_length_decay_rate = 0;
-
916 shoot_parameters_primary.insertion_angle_tip.uniformDistribution(50, 80);
-
917 shoot_parameters_primary.flowers_require_dormancy = false;
-
918 shoot_parameters_primary.growth_requires_dormancy = false;
-
919 shoot_parameters_primary.flower_bud_break_probability = 0.2;
-
920 shoot_parameters_primary.determinate_shoot_growth = false;
-
921 shoot_parameters_primary.max_nodes = 15;
-
922 shoot_parameters_primary.gravitropic_curvature = 20;
-
923 shoot_parameters_primary.tortuosity = 0;
-
924 shoot_parameters_primary.defineChildShootTypes({"secondary_puncturevine"}, {1.f});
-
925
-
926 ShootParameters shoot_parameters_base = shoot_parameters_primary;
-
927 shoot_parameters_base.phytomer_parameters = phytomer_parameters_puncturevine;
-
928 shoot_parameters_base.phytomer_parameters.internode.phyllotactic_angle.uniformDistribution(137.5-10,137.5+10);
-
929 shoot_parameters_base.phytomer_parameters.petiole.petioles_per_internode = 0;
-
930 shoot_parameters_base.phytomer_parameters.internode.pitch = 0;
-
931 shoot_parameters_base.phytomer_parameters.petiole.pitch = 0;
-
932 shoot_parameters_base.vegetative_bud_break_probability = 1;
-
933 shoot_parameters_base.vegetative_bud_break_time = 1;
-
934 shoot_parameters_base.internode_radius_initial = 0.001;
-
935 shoot_parameters_base.phyllochron = 1;
-
936 shoot_parameters_base.elongation_rate = 0.25;
-
937 shoot_parameters_base.girth_growth_rate = 0.;
-
938 shoot_parameters_base.gravitropic_curvature = 0;
-
939 shoot_parameters_base.internode_length_max = 0.01;
-
940 shoot_parameters_base.internode_length_decay_rate = 0;
-
941 shoot_parameters_base.insertion_angle_tip = 90;
-
942 shoot_parameters_base.insertion_angle_decay_rate = 0;
-
943 shoot_parameters_base.internode_radius_initial = 0.0005;
-
944 shoot_parameters_base.flowers_require_dormancy = false;
-
945 shoot_parameters_base.growth_requires_dormancy = false;
-
946 shoot_parameters_base.flower_bud_break_probability = 0.0;
-
947 shoot_parameters_base.max_nodes.uniformDistribution(3,5);
-
948 shoot_parameters_base.defineChildShootTypes({"primary_puncturevine"},{1.f});
-
949
-
950 ShootParameters shoot_parameters_children = shoot_parameters_primary;
-
951 shoot_parameters_children.base_roll = 0;
-
952
-
953 defineShootType("base_puncturevine", shoot_parameters_base);
-
954 defineShootType("primary_puncturevine", shoot_parameters_primary);
-
955 defineShootType("secondary_puncturevine", shoot_parameters_children);
-
956
-
957}
-
958
-
959uint PlantArchitecture::buildPuncturevinePlant(const helios::vec3 &base_position, float age) {
-
960
-
961 if (shoot_types.empty()) {
-
962 //automatically initialize puncturevine plant shoots
-
963 initializePuncturevineShoots();
-
964 }
-
965
-
966 uint plantID = addPlantInstance(base_position, age);
-
967
-
968 uint uID_stem = addBaseStemShoot(plantID, 3, make_AxisRotation(0, 0.f, 0.f), 0.001, 0.001, 1, 1, 0, "base_puncturevine");
-
969
-
970 breakPlantDormancy(plantID);
-
971
-
972 setPlantPhenologicalThresholds(plantID, 0, -1, 7, 1000, 5, 100);
-
973
-
974 return plantID;
-
975
-
976}
-
977
-
978void PlantArchitecture::initializeEasternRedbudShoots() {
-
979
-
980 // ---- Phytomer Parameters ---- //
-
981
-
982 PhytomerParameters phytomer_parameters_redbud(context_ptr->getRandomGenerator());
-
983
-
984 phytomer_parameters_redbud.internode.pitch = 15;
-
985 phytomer_parameters_redbud.internode.phyllotactic_angle.uniformDistribution(170,190);
-
986// phytomer_parameters_redbud.internode.color = make_RGBcolor(0.55, 0.52, 0.39);
-
987 phytomer_parameters_redbud.internode.image_texture = "plugins/plantarchitecture/assets/textures/WesternRedbudBark.jpg";
-
988 phytomer_parameters_redbud.internode.color.scale(0.3);
-
989 phytomer_parameters_redbud.internode.length_segments = 1;
-
990 phytomer_parameters_redbud.internode.max_floral_buds_per_petiole = 5;
-
991
-
992 phytomer_parameters_redbud.petiole.petioles_per_internode = 1;
-
993 phytomer_parameters_redbud.petiole.color = make_RGBcolor(0.65, 0.52, 0.39);
-
994 phytomer_parameters_redbud.petiole.pitch.uniformDistribution(20, 40);
-
995 phytomer_parameters_redbud.petiole.radius = 0.0017;
-
996 phytomer_parameters_redbud.petiole.length = 0.05;
-
997 phytomer_parameters_redbud.petiole.taper = 0;
-
998 phytomer_parameters_redbud.petiole.curvature = 0;
-
999 phytomer_parameters_redbud.petiole.length_segments = 1;
+
905 PhytomerParameters phytomer_parameters_trifoliate(context_ptr->getRandomGenerator());
+
906
+
907 phytomer_parameters_trifoliate.internode.pitch = 20;
+
908 phytomer_parameters_trifoliate.internode.phyllotactic_angle.uniformDistribution(145, 215);
+
909 phytomer_parameters_trifoliate.internode.max_floral_buds_per_petiole = 1;
+
910 phytomer_parameters_trifoliate.internode.max_vegetative_buds_per_petiole = 1;
+
911 phytomer_parameters_trifoliate.internode.color = make_RGBcolor(0.15, 0.2, 0.1);
+
912 phytomer_parameters_trifoliate.internode.length_segments = 2;
+
913
+
914 phytomer_parameters_trifoliate.petiole.petioles_per_internode = 1;
+
915 phytomer_parameters_trifoliate.petiole.pitch.uniformDistribution(45,60);
+
916 phytomer_parameters_trifoliate.petiole.radius = 0.0015;
+
917 phytomer_parameters_trifoliate.petiole.length.uniformDistribution(0.08,0.1);
+
918 phytomer_parameters_trifoliate.petiole.taper = 0.25;
+
919 phytomer_parameters_trifoliate.petiole.curvature.uniformDistribution(-200,-50);
+
920 phytomer_parameters_trifoliate.petiole.color = make_RGBcolor(0.17,0.25,0.07);
+
921 phytomer_parameters_trifoliate.petiole.length_segments = 5;
+
922 phytomer_parameters_trifoliate.petiole.radial_subdivisions = 6;
+
923
+
924 phytomer_parameters_trifoliate.leaf.leaves_per_petiole = 3;
+
925 phytomer_parameters_trifoliate.leaf.pitch.normalDistribution(0, 10);
+
926 phytomer_parameters_trifoliate.leaf.yaw = 10;
+
927 phytomer_parameters_trifoliate.leaf.roll = -15;
+
928 phytomer_parameters_trifoliate.leaf.leaflet_offset = 0.4;
+
929 phytomer_parameters_trifoliate.leaf.leaflet_scale = 0.9;
+
930 phytomer_parameters_trifoliate.leaf.prototype_function = CowpeaLeafPrototype_trifoliate;
+
931 phytomer_parameters_trifoliate.leaf.prototype_scale.uniformDistribution(0.09,0.1);
+
932 phytomer_parameters_trifoliate.leaf.subdivisions = 6;
+
933 phytomer_parameters_trifoliate.leaf.unique_prototypes = 5;
+
934
+
935 phytomer_parameters_trifoliate.peduncle.length = 0.17;
+
936 phytomer_parameters_trifoliate.peduncle.radius = 0.0015;
+
937 phytomer_parameters_trifoliate.peduncle.pitch.uniformDistribution(0, 30);
+
938 phytomer_parameters_trifoliate.peduncle.roll = 90;
+
939 phytomer_parameters_trifoliate.peduncle.curvature.uniformDistribution(50, 250);
+
940 phytomer_parameters_trifoliate.peduncle.color = make_RGBcolor(0.15, 0.25, 0.1);
+
941 phytomer_parameters_trifoliate.peduncle.length_segments = 6;
+
942 phytomer_parameters_trifoliate.peduncle.radial_subdivisions = 6;
+
943
+
944 phytomer_parameters_trifoliate.inflorescence.flowers_per_peduncle = 3;//.uniformDistribution(1, 3);
+
945 phytomer_parameters_trifoliate.inflorescence.flower_offset = 0.;
+
946 phytomer_parameters_trifoliate.inflorescence.pitch.uniformDistribution(50,70);
+
947 phytomer_parameters_trifoliate.inflorescence.roll.uniformDistribution(-20,20);
+
948 phytomer_parameters_trifoliate.inflorescence.flower_prototype_scale = 0.015;
+
949 phytomer_parameters_trifoliate.inflorescence.flower_prototype_function = CowpeaFlowerPrototype;
+
950 phytomer_parameters_trifoliate.inflorescence.fruit_prototype_scale.uniformDistribution(0.025,0.03);
+
951 phytomer_parameters_trifoliate.inflorescence.fruit_prototype_function = CowpeaFruitPrototype;
+
952 phytomer_parameters_trifoliate.inflorescence.fruit_gravity_factor_fraction.uniformDistribution(0.,0.5);
+
953
+
954 PhytomerParameters phytomer_parameters_unifoliate = phytomer_parameters_trifoliate;
+
955 phytomer_parameters_unifoliate.internode.pitch = 0;
+
956 phytomer_parameters_unifoliate.internode.max_vegetative_buds_per_petiole = 0;
+
957 phytomer_parameters_unifoliate.internode.max_floral_buds_per_petiole = 0;
+
958 phytomer_parameters_unifoliate.petiole.petioles_per_internode = 2;
+
959 phytomer_parameters_unifoliate.petiole.length = 0.001;
+
960 phytomer_parameters_unifoliate.petiole.radius = 0.0004;
+
961 phytomer_parameters_unifoliate.petiole.pitch.uniformDistribution(60,80);
+
962 phytomer_parameters_unifoliate.leaf.leaves_per_petiole = 1;
+
963 phytomer_parameters_unifoliate.leaf.prototype_scale = 0.01;
+
964 phytomer_parameters_unifoliate.leaf.pitch.uniformDistribution(-10, 10);
+
965 phytomer_parameters_unifoliate.leaf.prototype_function = CowpeaLeafPrototype_unifoliate;
+
966
+
967 // ---- Shoot Parameters ---- //
+
968
+
969 ShootParameters shoot_parameters_trifoliate(context_ptr->getRandomGenerator());
+
970 shoot_parameters_trifoliate.phytomer_parameters = phytomer_parameters_trifoliate;
+
971 shoot_parameters_trifoliate.phytomer_parameters.phytomer_creation_function = CowpeaPhytomerCreationFunction;
+
972
+
973 shoot_parameters_trifoliate.max_nodes = 20;
+
974 shoot_parameters_trifoliate.internode_radius_initial = 0.00025;
+
975 shoot_parameters_trifoliate.internode_radius_max = 0.0025;
+
976 shoot_parameters_trifoliate.insertion_angle_tip.uniformDistribution(40,70);
+
977// shoot_parameters_trifoliate.child_insertion_angle_decay_rate = 0; (default)
+
978 shoot_parameters_trifoliate.internode_length_max = 0.02;
+
979// shoot_parameters_trifoliate.child_internode_length_min = 0.0; (default)
+
980// shoot_parameters_trifoliate.child_internode_length_decay_rate = 0; (default)
+
981 shoot_parameters_trifoliate.base_roll = 90;
+
982 shoot_parameters_trifoliate.base_yaw.uniformDistribution(-20,20);
+
983 shoot_parameters_trifoliate.gravitropic_curvature = 200;
+
984
+
985 shoot_parameters_trifoliate.phyllochron = 1;
+
986// shoot_parameters_trifoliate.leaf_flush_count = 1; (default)
+
987 shoot_parameters_trifoliate.elongation_rate = 0.1;
+
988 shoot_parameters_trifoliate.girth_area_factor = 20.f;
+
989 shoot_parameters_trifoliate.vegetative_bud_break_time = 3;
+
990 shoot_parameters_trifoliate.vegetative_bud_break_probability = 0.5;
+
991// shoot_parameters_trifoliate.max_terminal_floral_buds = 0; (default)
+
992 shoot_parameters_trifoliate.flower_bud_break_probability.uniformDistribution(0.2,0.3);
+
993 shoot_parameters_trifoliate.fruit_set_probability = 0.5;
+
994// shoot_parameters_trifoliate.flowers_require_dormancy = false; (default)
+
995// shoot_parameters_trifoliate.growth_requires_dormancy = false; (default)
+
996// shoot_parameters_trifoliate.determinate_shoot_growth = true; (default)
+
997
+
998 shoot_parameters_trifoliate.defineChildShootTypes({"trifoliate"},{1.0});
+
999
1000
-
1001 phytomer_parameters_redbud.leaf.leaves_per_petiole = 1;
-
1002 phytomer_parameters_redbud.leaf.pitch.uniformDistribution(-110, -80);
-
1003 phytomer_parameters_redbud.leaf.yaw = 0;
-
1004 phytomer_parameters_redbud.leaf.roll.uniformDistribution(-5, 5);
-
1005 phytomer_parameters_redbud.leaf.prototype_function = RedbudLeafPrototype;
-
1006 phytomer_parameters_redbud.leaf.prototype_scale = 0.1;
-
1007 phytomer_parameters_redbud.leaf.subdivisions = 5;
-
1008
-
1009 phytomer_parameters_redbud.peduncle.length = 0.02;
-
1010 phytomer_parameters_redbud.peduncle.pitch.uniformDistribution(50,90);
-
1011 phytomer_parameters_redbud.peduncle.color = make_RGBcolor(0.32, 0.05, 0.13);
-
1012
-
1013 phytomer_parameters_redbud.inflorescence.flowers_per_rachis = 1;
-
1014 phytomer_parameters_redbud.inflorescence.pitch = 0;
-
1015 phytomer_parameters_redbud.inflorescence.flower_prototype_function = RedbudFlowerPrototype;
-
1016 phytomer_parameters_redbud.inflorescence.flower_prototype_scale = 0.04;
-
1017 phytomer_parameters_redbud.inflorescence.fruit_prototype_function = RedbudFruitPrototype;
-
1018 phytomer_parameters_redbud.inflorescence.fruit_prototype_scale = 0.1;
-
1019 phytomer_parameters_redbud.inflorescence.fruit_gravity_factor_fraction = 0.7;
-
1020
-
1021 phytomer_parameters_redbud.phytomer_creation_function = RedbudPhytomerCreationFunction;
-
1022 phytomer_parameters_redbud.phytomer_callback_function = RedbudPhytomerCallbackFunction;
-
1023
-
1024 // ---- Shoot Parameters ---- //
-
1025
-
1026 ShootParameters shoot_parameters_main(context_ptr->getRandomGenerator());
-
1027 shoot_parameters_main.phytomer_parameters = phytomer_parameters_redbud;
-
1028 shoot_parameters_main.vegetative_bud_break_probability = 1.0;
-
1029 shoot_parameters_main.vegetative_bud_break_time = 1;
-
1030 shoot_parameters_main.phyllochron = 1.5;
-
1031 shoot_parameters_main.elongation_rate = 0.17;
-
1032 shoot_parameters_main.girth_growth_rate = 0.00045;
-
1033 shoot_parameters_main.gravitropic_curvature = 300;
-
1034 shoot_parameters_main.tortuosity = 20;
-
1035 shoot_parameters_main.internode_length_max = 0.04;
-
1036 shoot_parameters_main.internode_length_decay_rate = 0.005;
-
1037 shoot_parameters_main.insertion_angle_tip = 75;
-
1038 shoot_parameters_main.insertion_angle_decay_rate = 10;
-
1039 shoot_parameters_main.internode_radius_initial = 0.0015;
-
1040 shoot_parameters_main.internode_radius_max = 0.02;
-
1041 shoot_parameters_main.flowers_require_dormancy = true;
-
1042 shoot_parameters_main.growth_requires_dormancy = true;
-
1043 shoot_parameters_main.determinate_shoot_growth = false;
-
1044 shoot_parameters_main.max_terminal_floral_buds = 0;
-
1045 shoot_parameters_main.flower_bud_break_probability = 0.8;
-
1046 shoot_parameters_main.fruit_set_probability = 0.3;
-
1047 shoot_parameters_main.max_nodes = 30;
-
1048 shoot_parameters_main.base_roll = 90;
-
1049
-
1050 ShootParameters shoot_parameters_trunk = shoot_parameters_main;
-
1051 shoot_parameters_trunk.phytomer_parameters.internode.pitch = 0;
-
1052 shoot_parameters_trunk.phytomer_parameters.internode.radial_subdivisions = 15;
-
1053 shoot_parameters_trunk.phytomer_parameters.internode.max_floral_buds_per_petiole = 0;
-
1054 shoot_parameters_trunk.internode_radius_max = 1;
-
1055 shoot_parameters_trunk.phyllochron = 1.25;
-
1056 shoot_parameters_trunk.insertion_angle_tip = 60;
-
1057 shoot_parameters_trunk.max_nodes = 45;
-
1058 shoot_parameters_trunk.tortuosity = 5;
-
1059 shoot_parameters_trunk.defineChildShootTypes({"eastern_redbud_shoot"},{1.f});
-
1060
-
1061 defineShootType("eastern_redbud_trunk", shoot_parameters_trunk);
-
1062 defineShootType("eastern_redbud_shoot", shoot_parameters_main);
-
1063
-
1064}
-
1065
-
1066void PlantArchitecture::initializeRomaineLettuceShoots() {
-
1067
-
1068 // ---- Phytomer Parameters ---- //
-
1069
-
1070 PhytomerParameters phytomer_parameters(context_ptr->getRandomGenerator());
-
1071
-
1072 phytomer_parameters.internode.pitch = 0;
-
1073 phytomer_parameters.internode.phyllotactic_angle = 137.5;
-
1074 phytomer_parameters.internode.color = make_RGBcolor(0.402,0.423,0.413);
-
1075 phytomer_parameters.internode.length_segments = 1;
-
1076 phytomer_parameters.internode.radial_subdivisions = 10;
-
1077
-
1078 phytomer_parameters.petiole.petioles_per_internode = 1;
-
1079 phytomer_parameters.petiole.pitch.uniformDistribution(0,30);
-
1080 phytomer_parameters.petiole.radius = 0.001;
-
1081 phytomer_parameters.petiole.length = 0.001;
-
1082 phytomer_parameters.petiole.length_segments = 1;
-
1083 phytomer_parameters.petiole.radial_subdivisions = 3;
-
1084 phytomer_parameters.petiole.color = RGB::red;
+
1001 ShootParameters shoot_parameters_unifoliate = shoot_parameters_trifoliate;
+
1002 shoot_parameters_unifoliate.phytomer_parameters = phytomer_parameters_unifoliate;
+
1003 shoot_parameters_unifoliate.max_nodes = 1;
+
1004 shoot_parameters_unifoliate.vegetative_bud_break_probability = 0;
+
1005 shoot_parameters_unifoliate.flower_bud_break_probability = 0;
+
1006 shoot_parameters_unifoliate.insertion_angle_tip = 0;
+
1007 shoot_parameters_unifoliate.insertion_angle_decay_rate = 0;
+
1008 shoot_parameters_unifoliate.vegetative_bud_break_time = 1;
+
1009 shoot_parameters_unifoliate.defineChildShootTypes({"trifoliate"},{1.0});
+
1010
+
1011 defineShootType("unifoliate",shoot_parameters_unifoliate);
+
1012 defineShootType("trifoliate",shoot_parameters_trifoliate);
+
1013
+
1014}
+
1015
+
1016uint PlantArchitecture::buildCowpeaPlant(const helios::vec3 &base_position) {
+
1017
+
1018 if (shoot_types.empty()) {
+
1019 //automatically initialize cowpea plant shoots
+
1020 initializeCowpeaShoots();
+
1021 }
+
1022
+
1023 uint plantID = addPlantInstance(base_position, 0);
+
1024
+
1025 AxisRotation base_rotation = make_AxisRotation(context_ptr->randu(0.f, 0.05f * M_PI), context_ptr->randu(0.f, 2.f * M_PI), context_ptr->randu(0.f, 2.f * M_PI));
+
1026 uint uID_unifoliate = addBaseStemShoot(plantID, 1, base_rotation, 0.0005, 0.02, 0.01, 0.01, 0, "unifoliate");
+
1027
+
1028 appendShoot(plantID, uID_unifoliate, 1, make_AxisRotation(0, 0, 0.5f * M_PI), shoot_types.at("trifoliate").internode_radius_initial.val(), shoot_types.at("trifoliate").internode_length_max.val(), 0.1, 0.1, 0, "trifoliate");
+
1029
+
1030 breakPlantDormancy(plantID);
+
1031
+
1032 setPlantPhenologicalThresholds(plantID, 0, 18, 3, 3, 5, 100, false);
+
1033
+
1034 return plantID;
+
1035
+
1036}
+
1037
+
1038void PlantArchitecture::initializeGrapevineVSPShoots() {
+
1039
+
1040 // ---- Phytomer Parameters ---- //
+
1041
+
1042 PhytomerParameters phytomer_parameters_grapevine(context_ptr->getRandomGenerator());
+
1043
+
1044 phytomer_parameters_grapevine.internode.pitch = 20;
+
1045 phytomer_parameters_grapevine.internode.phyllotactic_angle.uniformDistribution(170, 190);
+
1046 phytomer_parameters_grapevine.internode.color = make_RGBcolor(0.65, 0.52, 0.39);
+
1047 phytomer_parameters_grapevine.internode.length_segments = 3;//1;
+
1048 phytomer_parameters_grapevine.internode.max_floral_buds_per_petiole = 1;
+
1049 phytomer_parameters_grapevine.internode.max_vegetative_buds_per_petiole = 1;
+
1050
+
1051 phytomer_parameters_grapevine.petiole.petioles_per_internode = 1;
+
1052 phytomer_parameters_grapevine.petiole.color = make_RGBcolor(0.65, 0.52, 0.39);
+
1053 phytomer_parameters_grapevine.petiole.pitch.uniformDistribution(45, 70);
+
1054 phytomer_parameters_grapevine.petiole.radius = 0.0025;
+
1055 phytomer_parameters_grapevine.petiole.length = 0.1;
+
1056 phytomer_parameters_grapevine.petiole.taper = 0;
+
1057 phytomer_parameters_grapevine.petiole.curvature = 0;
+
1058 phytomer_parameters_grapevine.petiole.length_segments = 1;
+
1059
+
1060 phytomer_parameters_grapevine.leaf.leaves_per_petiole = 1;
+
1061 phytomer_parameters_grapevine.leaf.pitch.uniformDistribution(-110, -80);
+
1062 phytomer_parameters_grapevine.leaf.yaw.uniformDistribution(-20, 20);
+
1063 phytomer_parameters_grapevine.leaf.roll.uniformDistribution(-5, 5);
+
1064 phytomer_parameters_grapevine.leaf.prototype_function = GrapevineLeafPrototype;
+
1065 phytomer_parameters_grapevine.leaf.prototype_scale = 0.2;
+
1066 phytomer_parameters_grapevine.leaf.subdivisions = 5;
+
1067 phytomer_parameters_grapevine.leaf.unique_prototypes = 10;
+
1068
+
1069 phytomer_parameters_grapevine.peduncle.length = 0.08;
+
1070 phytomer_parameters_grapevine.peduncle.pitch.uniformDistribution(50, 90);
+
1071 phytomer_parameters_grapevine.peduncle.color = make_RGBcolor(0.32, 0.05, 0.13);
+
1072
+
1073 phytomer_parameters_grapevine.inflorescence.flowers_per_peduncle = 1;
+
1074 phytomer_parameters_grapevine.inflorescence.pitch = 0;
+
1075// phytomer_parameters_grapevine.inflorescence.flower_prototype_function = GrapevineFlowerPrototype;
+
1076 phytomer_parameters_grapevine.inflorescence.flower_prototype_scale = 0.04;
+
1077// phytomer_parameters_grapevine.inflorescence.fruit_prototype_function = GrapevineFruitPrototype;
+
1078 phytomer_parameters_grapevine.inflorescence.fruit_prototype_scale = 0.04;
+
1079 phytomer_parameters_grapevine.inflorescence.fruit_gravity_factor_fraction = 0.9;
+
1080
+
1081 phytomer_parameters_grapevine.phytomer_creation_function = GrapevinePhytomerCreationFunction;
+
1082// phytomer_parameters_grapevine.phytomer_callback_function = GrapevinePhytomerCallbackFunction;
+
1083
+
1084 // ---- Shoot Parameters ---- //
1085
-
1086 phytomer_parameters.leaf.leaves_per_petiole = 1;
-
1087 phytomer_parameters.leaf.pitch = 0;
-
1088 phytomer_parameters.leaf.yaw = 0;
-
1089 phytomer_parameters.leaf.roll = 0;
-
1090 phytomer_parameters.leaf.prototype_function = RomaineLettuceLeafPrototype;
-
1091 phytomer_parameters.leaf.prototype_scale.uniformDistribution(0.15,0.25);
-
1092 phytomer_parameters.leaf.subdivisions = 30;
-
1093
-
1094 phytomer_parameters.phytomer_creation_function = RomaineLettucePhytomerCreationFunction;
-
1095
-
1096 // ---- Shoot Parameters ---- //
-
1097
-
1098 ShootParameters shoot_parameters_mainstem(context_ptr->getRandomGenerator());
-
1099 shoot_parameters_mainstem.phytomer_parameters = phytomer_parameters;
-
1100 shoot_parameters_mainstem.vegetative_bud_break_probability = 0;
-
1101 shoot_parameters_mainstem.internode_radius_initial = 0.01;
-
1102 shoot_parameters_mainstem.phyllochron = 1;
-
1103 shoot_parameters_mainstem.elongation_rate = 0.15;
-
1104 shoot_parameters_mainstem.girth_growth_rate = 0;
-
1105 shoot_parameters_mainstem.gravitropic_curvature = 10;
-
1106 shoot_parameters_mainstem.internode_length_max = 0.001;
-
1107 shoot_parameters_mainstem.internode_length_decay_rate = 0;
-
1108 shoot_parameters_mainstem.flowers_require_dormancy = false;
-
1109 shoot_parameters_mainstem.growth_requires_dormancy = false;
-
1110 shoot_parameters_mainstem.flower_bud_break_probability = 0.0;
-
1111 shoot_parameters_mainstem.max_nodes = 25;
-
1112
-
1113 defineShootType("mainstem",shoot_parameters_mainstem);
-
1114
-
1115
-
1116}
-
1117
-
1118uint PlantArchitecture::buildRomaineLettucePlant(const helios::vec3 &base_position, float age) {
-
1119
-
1120 if (shoot_types.empty()) {
-
1121 //automatically initialize sugarbeet plant shoots
-
1122 initializeSugarbeetShoots();
-
1123 }
+
1086 ShootParameters shoot_parameters_main(context_ptr->getRandomGenerator());
+
1087 shoot_parameters_main.phytomer_parameters = phytomer_parameters_grapevine;
+
1088 shoot_parameters_main.vegetative_bud_break_probability = 0.1;
+
1089 shoot_parameters_main.vegetative_bud_break_time = 1;
+
1090 shoot_parameters_main.phyllochron = 0.5;
+
1091 shoot_parameters_main.elongation_rate = 0.15;
+
1092 shoot_parameters_main.girth_area_factor = 4.f;
+
1093 shoot_parameters_main.gravitropic_curvature = 300;
+
1094 shoot_parameters_main.tortuosity = 20;
+
1095 shoot_parameters_main.internode_length_max.uniformDistribution(0.075,0.1);
+
1096 shoot_parameters_main.internode_length_decay_rate = 0;
+
1097 shoot_parameters_main.insertion_angle_tip = 45;
+
1098 shoot_parameters_main.insertion_angle_decay_rate = 0;
+
1099 shoot_parameters_main.internode_radius_initial = 0.003;
+
1100 shoot_parameters_main.internode_radius_max = 0.02;
+
1101 shoot_parameters_main.flowers_require_dormancy = false;
+
1102 shoot_parameters_main.growth_requires_dormancy = false;
+
1103 shoot_parameters_main.determinate_shoot_growth = false;
+
1104 shoot_parameters_main.max_terminal_floral_buds = 0;
+
1105 shoot_parameters_main.flower_bud_break_probability = 0.5;
+
1106 shoot_parameters_main.fruit_set_probability = 0.2;
+
1107 shoot_parameters_main.max_nodes = 30;
+
1108 shoot_parameters_main.base_roll = 90;
+
1109 shoot_parameters_main.base_yaw = 0;
+
1110
+
1111 ShootParameters shoot_parameters_cane = shoot_parameters_main;
+
1112// shoot_parameters_cane.phytomer_parameters.internode.image_texture = "plugins/plantarchitecture/assets/textures/GrapeBark.jpg";
+
1113 shoot_parameters_cane.phytomer_parameters.internode.pitch = 0;
+
1114 shoot_parameters_cane.phytomer_parameters.internode.radial_subdivisions = 15;
+
1115 shoot_parameters_cane.phytomer_parameters.internode.max_floral_buds_per_petiole = 0;
+
1116 shoot_parameters_cane.phytomer_parameters.internode.phyllotactic_angle = 0;
+
1117 shoot_parameters_cane.internode_radius_max = 0.1;
+
1118 shoot_parameters_cane.insertion_angle_tip.uniformDistribution(60, 120);
+
1119 shoot_parameters_cane.max_nodes = 9;
+
1120 shoot_parameters_cane.tortuosity = 1.5;
+
1121 shoot_parameters_cane.gravitropic_curvature = 10;
+
1122 shoot_parameters_cane.vegetative_bud_break_probability = 1.0;
+
1123 shoot_parameters_cane.defineChildShootTypes({"grapevine_shoot"},{1.f});
1124
-
1125 uint plantID = addPlantInstance(base_position, age);
-
1126
-
1127 uint uID_stem = addBaseStemShoot(plantID, 3, make_AxisRotation(context_ptr->randu(0.f, 0.03f * M_PI), context_ptr->randu(0.f, 2.f * M_PI), 0.25f * M_PI), 0.005, 0.001, 1, 1, 0, "mainstem");
-
1128
-
1129 breakPlantDormancy(plantID);
-
1130
-
1131 setPlantPhenologicalThresholds(plantID, 0, 1000, 10, 60, 5, 100);
-
1132
-
1133 return plantID;
-
1134
-
1135}
-
1136
-
1137uint PlantArchitecture::buildEasternRedbudPlant(const helios::vec3 &base_position, float age) {
+
1125 ShootParameters shoot_parameters_trunk = shoot_parameters_main;
+
1126 shoot_parameters_trunk.phytomer_parameters.internode.image_texture = "plugins/plantarchitecture/assets/textures/GrapeBark.jpg";
+
1127 shoot_parameters_trunk.phytomer_parameters.internode.pitch = 0;
+
1128 shoot_parameters_trunk.phytomer_parameters.internode.phyllotactic_angle = 0;
+
1129 shoot_parameters_trunk.phytomer_parameters.internode.radial_subdivisions = 25;
+
1130 shoot_parameters_trunk.phytomer_parameters.internode.max_floral_buds_per_petiole = 0;
+
1131 shoot_parameters_trunk.internode_radius_max = 1;
+
1132 shoot_parameters_trunk.phyllochron = 1.25;
+
1133 shoot_parameters_trunk.insertion_angle_tip = 90;
+
1134 shoot_parameters_trunk.max_nodes = 18;
+
1135 shoot_parameters_trunk.tortuosity = 1;
+
1136 shoot_parameters_trunk.vegetative_bud_break_probability = 0;
+
1137 shoot_parameters_trunk.defineChildShootTypes({"grapevine_shoot"},{1.f});
1138
-
1139 if (shoot_types.empty()) {
-
1140 //automatically initialize redbud plant shoots
-
1141 initializeEasternRedbudShoots();
-
1142 }
-
1143
-
1144 uint plantID = addPlantInstance(base_position, age);
-
1145
-
1146 uint uID_stem = addBaseStemShoot(plantID, 16, make_AxisRotation(context_ptr->randu(0,0.1*M_PI), context_ptr->randu(0,2*M_PI), context_ptr->randu(0,2*M_PI)), 0.0075, 0.05, 1, 1, 0.4, "eastern_redbud_trunk");
-
1147
-
1148 makePlantDormant(plantID);
-
1149
-
1150 removeShootLeaves( plantID, uID_stem );
+
1139 defineShootType("grapevine_trunk", shoot_parameters_trunk);
+
1140 defineShootType("grapevine_cane", shoot_parameters_cane);
+
1141 defineShootType("grapevine_shoot", shoot_parameters_main);
+
1142
+
1143}
+
1144
+
1145uint PlantArchitecture::buildGrapevineVSP(const helios::vec3 &base_position) {
+
1146
+
1147 if (shoot_types.empty()) {
+
1148 //automatically initialize redbud plant shoots
+
1149 initializeGrapevineVSPShoots();
+
1150 }
1151
-
1152 setPlantPhenologicalThresholds(plantID, 0, -1, 1, 3, 3, 12);
+
1152 uint plantID = addPlantInstance(base_position, 0);
1153
-
1154 return plantID;
-
1155
-
1156}
-
1157
-
1158void PlantArchitecture::initializeSorghumShoots() {
+
1154 uint uID_stem = addBaseStemShoot(plantID, 17, make_AxisRotation(context_ptr->randu(0,0.05*M_PI), 0, 0), 0.04, 0.05, 1, 1, 0.1, "grapevine_trunk");
+
1155 //appendPhytomerToShoot( plantID, uID_stem, getCurrentShootParameters("grapevine_trunk").phytomer_parameters, 1e-3, 0.1, 1, 1 );
+
1156
+
1157 uint uID_cane_L = appendShoot( plantID, uID_stem, 8, make_AxisRotation(context_ptr->randu(float(0.45f*M_PI),0.52f*M_PI),0,M_PI), 0.015, 0.15, 1, 1, 0.6, "grapevine_cane" );
+
1158 uint uID_cane_R = appendShoot( plantID, uID_stem, 8, make_AxisRotation(context_ptr->randu(float(0.45f*M_PI),0.52f*M_PI),M_PI,M_PI), 0.015, 0.15, 1, 1, 0.6, "grapevine_cane" );
1159
-
1160 // ---- Phytomer Parameters ---- //
+
1160// makePlantDormant(plantID);
1161
-
1162 PhytomerParameters phytomer_parameters_sorghum(context_ptr->getRandomGenerator());
-
1163
-
1164 phytomer_parameters_sorghum.internode.pitch = 0;
-
1165 phytomer_parameters_sorghum.internode.phyllotactic_angle.uniformDistribution(170,190);
-
1166 phytomer_parameters_sorghum.internode.color = make_RGBcolor(0.09,0.13,0.06);
-
1167 phytomer_parameters_sorghum.internode.length_segments = 2;
-
1168 phytomer_parameters_sorghum.internode.radial_subdivisions = 10;
-
1169 phytomer_parameters_sorghum.internode.max_floral_buds_per_petiole = 0;
-
1170 phytomer_parameters_sorghum.internode.max_vegetative_buds_per_petiole = 0;
+
1162 removeShootLeaves( plantID, uID_stem );
+
1163 removeShootLeaves( plantID, uID_cane_L );
+
1164 removeShootLeaves( plantID, uID_cane_R );
+
1165
+
1166 setPlantPhenologicalThresholds(plantID, 0, -1, -1, 5, 8, 25, false);
+
1167
+
1168 return plantID;
+
1169
+
1170}
1171
-
1172 phytomer_parameters_sorghum.petiole.petioles_per_internode = 1;
-
1173 phytomer_parameters_sorghum.petiole.pitch.uniformDistribution(-40,-20);
-
1174 phytomer_parameters_sorghum.petiole.radius = 0.0;
-
1175 phytomer_parameters_sorghum.petiole.length = 0.05;
-
1176 phytomer_parameters_sorghum.petiole.taper = 0;
-
1177 phytomer_parameters_sorghum.petiole.curvature = 0;
-
1178 phytomer_parameters_sorghum.petiole.length_segments = 1;
-
1179
-
1180 phytomer_parameters_sorghum.leaf.leaves_per_petiole = 1;
-
1181 phytomer_parameters_sorghum.leaf.pitch = 0;
-
1182 phytomer_parameters_sorghum.leaf.yaw = 0;
-
1183 phytomer_parameters_sorghum.leaf.roll = 0;
-
1184 phytomer_parameters_sorghum.leaf.prototype_function = SorghumLeafPrototype;
-
1185 phytomer_parameters_sorghum.leaf.prototype_scale = 0.6;
-
1186 phytomer_parameters_sorghum.leaf.subdivisions = 50;
-
1187 phytomer_parameters_sorghum.leaf.unique_prototypes = 10;
-
1188
-
1189 phytomer_parameters_sorghum.peduncle.length = 0.3;
-
1190 phytomer_parameters_sorghum.peduncle.radius = 0.008;
-
1191 phytomer_parameters_sorghum.peduncle.color = phytomer_parameters_sorghum.internode.color;
-
1192 phytomer_parameters_sorghum.peduncle.radial_subdivisions = 10;
+
1172void PlantArchitecture::initializeOliveTreeShoots(){
+
1173
+
1174 // ---- Phytomer Parameters ---- //
+
1175
+
1176 PhytomerParameters phytomer_parameters_olive(context_ptr->getRandomGenerator());
+
1177
+
1178 phytomer_parameters_olive.internode.pitch = 0;
+
1179 phytomer_parameters_olive.internode.phyllotactic_angle.uniformDistribution(80, 100 );
+
1180 phytomer_parameters_olive.internode.length_segments = 1;
+
1181 phytomer_parameters_olive.internode.image_texture = "plugins/plantarchitecture/assets/textures/OliveBark.jpg";
+
1182 phytomer_parameters_olive.internode.max_floral_buds_per_petiole = 3;
+
1183
+
1184 phytomer_parameters_olive.petiole.petioles_per_internode = 2;
+
1185 phytomer_parameters_olive.petiole.pitch.uniformDistribution(-40,-20);
+
1186 phytomer_parameters_olive.petiole.taper = 0.1;
+
1187 phytomer_parameters_olive.petiole.curvature = 0;
+
1188 phytomer_parameters_olive.petiole.length = 0.01;
+
1189 phytomer_parameters_olive.petiole.radius = 0.0005;
+
1190 phytomer_parameters_olive.petiole.length_segments = 1;
+
1191 phytomer_parameters_olive.petiole.radial_subdivisions = 3;
+
1192 phytomer_parameters_olive.petiole.color = make_RGBcolor(0.61, 0.5, 0.24);
1193
-
1194 phytomer_parameters_sorghum.inflorescence.flowers_per_rachis = 1;
-
1195 phytomer_parameters_sorghum.inflorescence.pitch = 0;
-
1196 phytomer_parameters_sorghum.inflorescence.roll = 0;
-
1197 phytomer_parameters_sorghum.inflorescence.fruit_prototype_scale = 0.16;
-
1198 phytomer_parameters_sorghum.inflorescence.fruit_prototype_function = SorghumPaniclePrototype;
+
1194 phytomer_parameters_olive.leaf.leaves_per_petiole = 1;
+
1195 phytomer_parameters_olive.leaf.prototype_function = OliveLeafPrototype;
+
1196 phytomer_parameters_olive.leaf.prototype_scale = 0.07;
+
1197 phytomer_parameters_olive.leaf.unique_prototypes = 1;
+
1198 phytomer_parameters_olive.leaf.subdivisions = 1;
1199
-
1200 phytomer_parameters_sorghum.phytomer_creation_function = SorghumPhytomerCreationFunction;
-
1201
-
1202 // ---- Shoot Parameters ---- //
-
1203
-
1204 ShootParameters shoot_parameters_mainstem(context_ptr->getRandomGenerator());
-
1205 shoot_parameters_mainstem.phytomer_parameters = phytomer_parameters_sorghum;
-
1206 shoot_parameters_mainstem.vegetative_bud_break_probability = 0;
-
1207 shoot_parameters_mainstem.flower_bud_break_probability = 1;
-
1208 shoot_parameters_mainstem.internode_radius_initial = 0.003;
-
1209 shoot_parameters_mainstem.phyllochron = 1;
-
1210 shoot_parameters_mainstem.elongation_rate = 0.15;
-
1211 shoot_parameters_mainstem.girth_growth_rate = 0.0015;
-
1212 shoot_parameters_mainstem.internode_radius_max = 0.015;
-
1213 shoot_parameters_mainstem.gravitropic_curvature.uniformDistribution(-1000,-400);
-
1214 shoot_parameters_mainstem.internode_length_max = 0.26;
-
1215 shoot_parameters_mainstem.internode_length_decay_rate = 0;
-
1216 shoot_parameters_mainstem.flowers_require_dormancy = false;
-
1217 shoot_parameters_mainstem.growth_requires_dormancy = false;
-
1218 shoot_parameters_mainstem.determinate_shoot_growth = false;
-
1219 shoot_parameters_mainstem.flower_bud_break_probability = 1.0;
-
1220 shoot_parameters_mainstem.fruit_set_probability = 1.0;
-
1221 shoot_parameters_mainstem.defineChildShootTypes({"mainstem"},{1.0});
-
1222 shoot_parameters_mainstem.max_nodes = 15;
-
1223 shoot_parameters_mainstem.max_terminal_floral_buds = 1;
-
1224
-
1225 defineShootType("mainstem",shoot_parameters_mainstem);
-
1226
-
1227}
-
1228
-
1229uint PlantArchitecture::buildSorghumPlant(const helios::vec3 &base_position, float age) {
-
1230
-
1231 if (shoot_types.empty()) {
-
1232 //automatically initialize sorghum plant shoots
-
1233 initializeSorghumShoots();
-
1234 }
-
1235
-
1236 uint plantID = addPlantInstance(base_position - make_vec3(0,0,0.025), age);
-
1237
-
1238 uint uID_stem = addBaseStemShoot(plantID, 1, make_AxisRotation(context_ptr->randu(0.f, 0.075f * M_PI), context_ptr->randu(0.f, 2.f * M_PI), context_ptr->randu(0.f, 2.f * M_PI)), 0.003, 0.06, 0.01, 0.01, 0, "mainstem");
-
1239
-
1240 breakPlantDormancy(plantID);
-
1241
-
1242 setPlantPhenologicalThresholds(plantID, 0, -1, -1, 2, 5, 100);
-
1243
-
1244 return plantID;
-
1245
-
1246}
-
1247
-
1248void PlantArchitecture::initializeSoybeanShoots() {
-
1249
-
1250 PhytomerParameters phytomer_parameters_trifoliate(context_ptr->getRandomGenerator());
-
1251
-
1252 phytomer_parameters_trifoliate.internode.pitch = 20;
-
1253 phytomer_parameters_trifoliate.internode.phyllotactic_angle.uniformDistribution(145, 215);
-
1254 phytomer_parameters_trifoliate.internode.max_floral_buds_per_petiole = 1;
-
1255 phytomer_parameters_trifoliate.internode.max_vegetative_buds_per_petiole = 1;
-
1256 phytomer_parameters_trifoliate.internode.color = make_RGBcolor(0.2,0.25,0.05);
-
1257 phytomer_parameters_trifoliate.internode.length_segments = 5;
-
1258
-
1259 phytomer_parameters_trifoliate.petiole.petioles_per_internode = 1;
-
1260 phytomer_parameters_trifoliate.petiole.pitch.uniformDistribution(25,50);
-
1261 phytomer_parameters_trifoliate.petiole.radius = 0.003;
-
1262 phytomer_parameters_trifoliate.petiole.length.uniformDistribution(0.12,0.16);
-
1263 phytomer_parameters_trifoliate.petiole.taper = 0.25;
-
1264 phytomer_parameters_trifoliate.petiole.curvature.uniformDistribution(-250,450);
-
1265 phytomer_parameters_trifoliate.petiole.color = phytomer_parameters_trifoliate.internode.color;
-
1266 phytomer_parameters_trifoliate.petiole.length_segments = 5;
-
1267 phytomer_parameters_trifoliate.petiole.radial_subdivisions = 6;
-
1268
-
1269 phytomer_parameters_trifoliate.leaf.leaves_per_petiole = 3;
-
1270 phytomer_parameters_trifoliate.leaf.pitch.uniformDistribution(-10, 20);
-
1271 phytomer_parameters_trifoliate.leaf.yaw = 10;
-
1272 phytomer_parameters_trifoliate.leaf.roll = -15;
-
1273 phytomer_parameters_trifoliate.leaf.leaflet_offset = 0.5;
-
1274 phytomer_parameters_trifoliate.leaf.leaflet_scale = 0.9;
-
1275 phytomer_parameters_trifoliate.leaf.prototype_function = SoybeanLeafPrototype_trifoliate;
-
1276 phytomer_parameters_trifoliate.leaf.prototype_scale.uniformDistribution(0.12,0.16);
-
1277 phytomer_parameters_trifoliate.leaf.subdivisions = 8;
-
1278 phytomer_parameters_trifoliate.leaf.unique_prototypes = 5;
-
1279
-
1280 phytomer_parameters_trifoliate.peduncle.length = 0.01;
-
1281 phytomer_parameters_trifoliate.peduncle.radius = 0.001;
-
1282 phytomer_parameters_trifoliate.peduncle.pitch.uniformDistribution(0, 40);
-
1283 phytomer_parameters_trifoliate.peduncle.roll = 90;
-
1284 phytomer_parameters_trifoliate.peduncle.curvature.uniformDistribution(-500, 500);
-
1285 phytomer_parameters_trifoliate.peduncle.length_segments = 1;
-
1286 phytomer_parameters_trifoliate.peduncle.radial_subdivisions = 6;
+
1200 phytomer_parameters_olive.peduncle.length = 0.065;
+
1201 phytomer_parameters_olive.peduncle.radius = 0.001;
+
1202 phytomer_parameters_olive.peduncle.pitch = 60;
+
1203 phytomer_parameters_olive.peduncle.roll = 0;
+
1204 phytomer_parameters_olive.peduncle.length_segments = 1;
+
1205 phytomer_parameters_olive.peduncle.color = make_RGBcolor(0.7, 0.72, 0.7);
+
1206
+
1207 phytomer_parameters_olive.inflorescence.flowers_per_peduncle = 10;
+
1208 phytomer_parameters_olive.inflorescence.flower_offset = 0.13;
+
1209 phytomer_parameters_olive.inflorescence.pitch.uniformDistribution(80,100);
+
1210 phytomer_parameters_olive.inflorescence.roll.uniformDistribution(0,360);
+
1211 phytomer_parameters_olive.inflorescence.flower_prototype_scale = 0.01;
+
1212// phytomer_parameters_olive.inflorescence.flower_prototype_function = OliveFlowerPrototype;
+
1213 phytomer_parameters_olive.inflorescence.fruit_prototype_scale = 0.025;
+
1214 phytomer_parameters_olive.inflorescence.fruit_prototype_function = OliveFruitPrototype;
+
1215
+
1216 // ---- Shoot Parameters ---- //
+
1217
+
1218 // Trunk
+
1219 ShootParameters shoot_parameters_trunk(context_ptr->getRandomGenerator());
+
1220 shoot_parameters_trunk.phytomer_parameters = phytomer_parameters_olive;
+
1221 shoot_parameters_trunk.phytomer_parameters.internode.phyllotactic_angle = 0;
+
1222 shoot_parameters_trunk.phytomer_parameters.internode.radial_subdivisions = 20;
+
1223 shoot_parameters_trunk.max_nodes = 20;
+
1224 shoot_parameters_trunk.girth_area_factor = 3.f;
+
1225 shoot_parameters_trunk.internode_radius_initial = 0.01;
+
1226 shoot_parameters_trunk.vegetative_bud_break_probability = 0;
+
1227 shoot_parameters_trunk.vegetative_bud_break_time = 0;
+
1228 shoot_parameters_trunk.tortuosity = 6;
+
1229 shoot_parameters_trunk.internode_length_max = 0.05;
+
1230 shoot_parameters_trunk.internode_length_decay_rate = 0;
+
1231 shoot_parameters_trunk.defineChildShootTypes({"scaffold"},{1});
+
1232
+
1233 // Proleptic shoots
+
1234 ShootParameters shoot_parameters_proleptic(context_ptr->getRandomGenerator());
+
1235 shoot_parameters_proleptic.phytomer_parameters = phytomer_parameters_olive;
+
1236// shoot_parameters_proleptic.phytomer_parameters.phytomer_creation_function = OlivePhytomerCreationFunction;
+
1237 shoot_parameters_proleptic.phytomer_parameters.phytomer_callback_function = OlivePhytomerCallbackFunction;
+
1238 shoot_parameters_proleptic.max_nodes = 20;
+
1239 shoot_parameters_proleptic.phyllochron = 1.0;
+
1240 shoot_parameters_proleptic.elongation_rate = 0.25;
+
1241 shoot_parameters_proleptic.girth_area_factor = 5.f;
+
1242 shoot_parameters_proleptic.vegetative_bud_break_probability = 0.15;
+
1243 shoot_parameters_proleptic.vegetative_bud_break_time = 0;
+
1244 shoot_parameters_proleptic.leaf_flush_count = 1;
+
1245 shoot_parameters_proleptic.gravitropic_curvature = 450;
+
1246 shoot_parameters_proleptic.tortuosity = 25;
+
1247 shoot_parameters_proleptic.internode_radius_initial = 0.002;
+
1248 shoot_parameters_proleptic.insertion_angle_tip.uniformDistribution( 15, 25);
+
1249 shoot_parameters_proleptic.insertion_angle_decay_rate = 2;
+
1250 shoot_parameters_proleptic.internode_length_max = 0.05;
+
1251 shoot_parameters_proleptic.internode_length_min = 0.03;
+
1252 shoot_parameters_proleptic.internode_length_decay_rate = 0.004;
+
1253 shoot_parameters_proleptic.fruit_set_probability = 0.25;
+
1254 shoot_parameters_proleptic.flower_bud_break_probability = 0.25;
+
1255 shoot_parameters_proleptic.max_terminal_floral_buds = 4;
+
1256 shoot_parameters_proleptic.flowers_require_dormancy = true;
+
1257 shoot_parameters_proleptic.growth_requires_dormancy = true;
+
1258 shoot_parameters_proleptic.determinate_shoot_growth = false;
+
1259 shoot_parameters_proleptic.defineChildShootTypes({"proleptic"},{1.0});
+
1260
+
1261 // Main scaffolds
+
1262 ShootParameters shoot_parameters_scaffold = shoot_parameters_proleptic;
+
1263 shoot_parameters_scaffold.phytomer_parameters.internode.radial_subdivisions = 10;
+
1264 shoot_parameters_scaffold.max_nodes = 12;
+
1265 shoot_parameters_scaffold.gravitropic_curvature = 700;
+
1266 shoot_parameters_scaffold.internode_length_max = 0.04;
+
1267 shoot_parameters_scaffold.tortuosity = 10;
+
1268 shoot_parameters_scaffold.defineChildShootTypes({"proleptic"},{1.0});
+
1269
+
1270 defineShootType("trunk", shoot_parameters_trunk);
+
1271 defineShootType("scaffold", shoot_parameters_scaffold);
+
1272 defineShootType("proleptic", shoot_parameters_proleptic);
+
1273
+
1274}
+
1275
+
1276uint PlantArchitecture::buildOliveTree(const helios::vec3 &base_position) {
+
1277
+
1278 if( shoot_types.empty() ){
+
1279 //automatically initialize almond tree shoots
+
1280 initializeOliveTreeShoots();
+
1281 }
+
1282
+
1283 uint plantID = addPlantInstance(base_position, 0);
+
1284
+
1285 uint uID_trunk = addBaseStemShoot(plantID, 19, make_AxisRotation(context_ptr->randu(0.f, 0.05f * M_PI), context_ptr->randu(0.f, 2.f * M_PI), context_ptr->randu(0.f, 2.f * M_PI)), 0.015, 0.008, 1.f, 1.f, 0, "trunk");
+
1286 appendPhytomerToShoot( plantID, uID_trunk, shoot_types.at("trunk").phytomer_parameters, 0, 0.01, 1, 1);
1287
-
1288 phytomer_parameters_trifoliate.inflorescence.flowers_per_rachis.uniformDistribution(1, 4);
-
1289 phytomer_parameters_trifoliate.inflorescence.flower_offset = 0.2;
-
1290 phytomer_parameters_trifoliate.inflorescence.flower_arrangement_pattern = "opposite";
-
1291 phytomer_parameters_trifoliate.inflorescence.pitch.uniformDistribution(50,70);
-
1292 phytomer_parameters_trifoliate.inflorescence.roll.uniformDistribution(-20,20);
-
1293 phytomer_parameters_trifoliate.inflorescence.flower_prototype_scale = 0.015;
-
1294 phytomer_parameters_trifoliate.inflorescence.flower_prototype_function = SoybeanFlowerPrototype;
-
1295 phytomer_parameters_trifoliate.inflorescence.fruit_prototype_scale.uniformDistribution(0.08,0.1);
-
1296 phytomer_parameters_trifoliate.inflorescence.fruit_prototype_function = SoybeanFruitPrototype;
-
1297 phytomer_parameters_trifoliate.inflorescence.fruit_gravity_factor_fraction.uniformDistribution(0.8,1.0);
+
1288 plant_instances.at(plantID).shoot_tree.at(uID_trunk)->meristem_is_alive = false;
+
1289
+
1290 auto phytomers = plant_instances.at(plantID).shoot_tree.at(uID_trunk)->phytomers;
+
1291 for( const auto & phytomer : phytomers ){
+
1292 phytomer->removeLeaf();
+
1293 phytomer->setVegetativeBudState(BUD_DEAD);
+
1294 phytomer->setFloralBudState(BUD_DEAD);
+
1295 }
+
1296
+
1297 uint Nscaffolds = 4;//context_ptr->randu(4,5);
1298
-
1299 PhytomerParameters phytomer_parameters_unifoliate = phytomer_parameters_trifoliate;
-
1300 phytomer_parameters_unifoliate.internode.pitch = 0;
-
1301 phytomer_parameters_unifoliate.internode.max_vegetative_buds_per_petiole = 0;
-
1302 phytomer_parameters_unifoliate.internode.max_floral_buds_per_petiole = 0;
-
1303 phytomer_parameters_unifoliate.petiole.petioles_per_internode = 2;
-
1304 phytomer_parameters_unifoliate.petiole.length = 0.01;
-
1305 phytomer_parameters_unifoliate.petiole.radius = 0.001;
-
1306 phytomer_parameters_unifoliate.petiole.pitch.uniformDistribution(60,80);
-
1307 phytomer_parameters_unifoliate.leaf.leaves_per_petiole = 1;
-
1308 phytomer_parameters_unifoliate.leaf.prototype_scale = 0.02;
-
1309 phytomer_parameters_unifoliate.leaf.pitch.uniformDistribution(-10, 10);
-
1310 phytomer_parameters_unifoliate.leaf.prototype_function = SoybeanLeafPrototype_unifoliate;
-
1311
-
1312 // ---- Shoot Parameters ---- //
-
1313
-
1314 ShootParameters shoot_parameters_trifoliate(context_ptr->getRandomGenerator());
-
1315 shoot_parameters_trifoliate.phytomer_parameters = phytomer_parameters_trifoliate;
-
1316 shoot_parameters_trifoliate.phytomer_parameters.phytomer_creation_function = BeanPhytomerCreationFunction;
-
1317
-
1318 shoot_parameters_trifoliate.max_nodes = 20;
-
1319 shoot_parameters_trifoliate.internode_radius_initial = 0.001;
-
1320 shoot_parameters_trifoliate.internode_radius_max = 0.004;
-
1321 shoot_parameters_trifoliate.insertion_angle_tip.uniformDistribution(40,60);
-
1322// shoot_parameters_trifoliate.child_insertion_angle_decay_rate = 0; (default)
-
1323 shoot_parameters_trifoliate.internode_length_max = 0.035;
-
1324// shoot_parameters_trifoliate.child_internode_length_min = 0.0; (default)
-
1325// shoot_parameters_trifoliate.child_internode_length_decay_rate = 0; (default)
-
1326 shoot_parameters_trifoliate.base_roll = 90;
-
1327 shoot_parameters_trifoliate.base_yaw.uniformDistribution(-20,20);
-
1328 shoot_parameters_trifoliate.gravitropic_curvature = 200;
-
1329
-
1330 shoot_parameters_trifoliate.phyllochron = 1;
-
1331// shoot_parameters_trifoliate.leaf_flush_count = 1; (default)
-
1332 shoot_parameters_trifoliate.elongation_rate = 0.15;
-
1333 shoot_parameters_trifoliate.girth_growth_rate = 0.0003;
-
1334 shoot_parameters_trifoliate.vegetative_bud_break_time = 3;
-
1335 shoot_parameters_trifoliate.vegetative_bud_break_probability = 0.25;
-
1336// shoot_parameters_trifoliate.max_terminal_floral_buds = 0; (default)
-
1337 shoot_parameters_trifoliate.flower_bud_break_probability.uniformDistribution(0.8,1.0);
-
1338 shoot_parameters_trifoliate.fruit_set_probability = 0.4;
-
1339// shoot_parameters_trifoliate.flowers_require_dormancy = false; (default)
-
1340// shoot_parameters_trifoliate.growth_requires_dormancy = false; (default)
-
1341// shoot_parameters_trifoliate.determinate_shoot_growth = true; (default)
-
1342
-
1343 shoot_parameters_trifoliate.defineChildShootTypes({"trifoliate"},{1.0});
+
1299 for( int i=0; i<Nscaffolds; i++ ) {
+
1300 float pitch = context_ptr->randu(deg2rad(30), deg2rad(35));
+
1301 uint uID_shoot = addChildShoot( plantID, uID_trunk, getShootNodeCount(plantID,uID_trunk)-i-1, context_ptr->randu(5, 7), make_AxisRotation(pitch, (float(i) + context_ptr->randu(-0.2f, 0.2f)) / float(Nscaffolds) * 2 * M_PI, 0), 0.007, 0.06, 1.f, 1.f, 0.5, "scaffold", 0);
+
1302
+
1303 }
+
1304
+
1305 makePlantDormant(plantID);
+
1306
+
1307 setPlantPhenologicalThresholds(plantID, 0, -1, 1, 3, 8, 20, true);
+
1308
+
1309 return plantID;
+
1310
+
1311}
+
1312
+
1313void PlantArchitecture::initializePistachioTreeShoots(){
+
1314
+
1315 // ---- Phytomer Parameters ---- //
+
1316
+
1317 PhytomerParameters phytomer_parameters_pistachio(context_ptr->getRandomGenerator());
+
1318
+
1319 phytomer_parameters_pistachio.internode.pitch = 0;
+
1320 phytomer_parameters_pistachio.internode.phyllotactic_angle.uniformDistribution(160, 200);
+
1321 phytomer_parameters_pistachio.internode.length_segments = 1;
+
1322 phytomer_parameters_pistachio.internode.image_texture = "plugins/plantarchitecture/assets/textures/OliveBark.jpg";
+
1323 phytomer_parameters_pistachio.internode.max_floral_buds_per_petiole = 3;
+
1324
+
1325 phytomer_parameters_pistachio.petiole.petioles_per_internode = 2;
+
1326 phytomer_parameters_pistachio.petiole.pitch.uniformDistribution(-45, -60);
+
1327 phytomer_parameters_pistachio.petiole.taper = 0.1;
+
1328 phytomer_parameters_pistachio.petiole.curvature.uniformDistribution(-800,800);
+
1329 phytomer_parameters_pistachio.petiole.length = 0.075;
+
1330 phytomer_parameters_pistachio.petiole.radius = 0.001;
+
1331 phytomer_parameters_pistachio.petiole.length_segments = 1;
+
1332 phytomer_parameters_pistachio.petiole.radial_subdivisions = 3;
+
1333 phytomer_parameters_pistachio.petiole.color = make_RGBcolor(0.6, 0.6, 0.4);
+
1334
+
1335 phytomer_parameters_pistachio.leaf.leaves_per_petiole = 3;
+
1336 phytomer_parameters_pistachio.leaf.prototype_function = PistachioLeafPrototype;
+
1337 phytomer_parameters_pistachio.leaf.prototype_scale = 0.08;
+
1338 phytomer_parameters_pistachio.leaf.leaflet_offset = 0.3;
+
1339 phytomer_parameters_pistachio.leaf.leaflet_scale = 0.75;
+
1340 phytomer_parameters_pistachio.leaf.pitch.uniformDistribution(-20,20);
+
1341 phytomer_parameters_pistachio.leaf.roll.uniformDistribution(-20,20);
+
1342 phytomer_parameters_pistachio.leaf.unique_prototypes = 5;
+
1343 phytomer_parameters_pistachio.leaf.subdivisions = 3;
1344
-
1345
-
1346 ShootParameters shoot_parameters_unifoliate = shoot_parameters_trifoliate;
-
1347 shoot_parameters_unifoliate.phytomer_parameters = phytomer_parameters_unifoliate;
-
1348 shoot_parameters_unifoliate.max_nodes = 1;
-
1349 shoot_parameters_unifoliate.vegetative_bud_break_probability = 0;
-
1350 shoot_parameters_unifoliate.flower_bud_break_probability = 0;
-
1351 shoot_parameters_unifoliate.insertion_angle_tip = 0;
-
1352 shoot_parameters_unifoliate.insertion_angle_decay_rate = 0;
-
1353 shoot_parameters_unifoliate.vegetative_bud_break_time = 1;
-
1354 shoot_parameters_unifoliate.defineChildShootTypes({"trifoliate"},{1.0});
-
1355
-
1356 defineShootType("unifoliate",shoot_parameters_unifoliate);
-
1357 defineShootType("trifoliate",shoot_parameters_trifoliate);
-
1358
-
1359// PhytomerParameters phytomer_parameters_trifoliate(context_ptr->getRandomGenerator());
-
1360//
-
1361// phytomer_parameters_trifoliate.internode.pitch = 20;
-
1362// phytomer_parameters_trifoliate.internode.phyllotactic_angle.uniformDistribution(145, 215);
-
1363// phytomer_parameters_trifoliate.internode.max_floral_buds_per_petiole = 1;
-
1364// phytomer_parameters_trifoliate.internode.max_vegetative_buds_per_petiole = 1;
-
1365// phytomer_parameters_trifoliate.internode.color = make_RGBcolor(0.2,0.25,0.05);
-
1366// phytomer_parameters_trifoliate.internode.length_segments = 5;
-
1367//
-
1368// phytomer_parameters_trifoliate.petiole.petioles_per_internode = 1;
-
1369// phytomer_parameters_trifoliate.petiole.pitch.uniformDistribution(30,70);
-
1370// phytomer_parameters_trifoliate.petiole.radius = 0.003;
-
1371// phytomer_parameters_trifoliate.petiole.length.uniformDistribution(0.12,0.16);
-
1372// phytomer_parameters_trifoliate.petiole.taper = 0.25;
-
1373// phytomer_parameters_trifoliate.petiole.curvature.uniformDistribution(-100,200);
-
1374// phytomer_parameters_trifoliate.petiole.color = make_RGBcolor(0.28,0.35,0.07);
-
1375// phytomer_parameters_trifoliate.petiole.length_segments = 5;
-
1376// phytomer_parameters_trifoliate.petiole.radial_subdivisions = 6;
-
1377//
-
1378// phytomer_parameters_trifoliate.leaf.leaves_per_petiole = 3;
-
1379// phytomer_parameters_trifoliate.leaf.pitch.normalDistribution(0, 10);
-
1380// phytomer_parameters_trifoliate.leaf.yaw = 10;
-
1381// phytomer_parameters_trifoliate.leaf.roll = -15;
-
1382// phytomer_parameters_trifoliate.leaf.leaflet_offset = 0.2;
-
1383// phytomer_parameters_trifoliate.leaf.leaflet_scale = 0.9;
-
1384// phytomer_parameters_trifoliate.leaf.prototype_function = SoybeanLeafPrototype_trifoliate;
-
1385// phytomer_parameters_trifoliate.leaf.prototype_scale.uniformDistribution(0.11,0.13);
-
1386// phytomer_parameters_trifoliate.leaf.subdivisions = 10;
-
1387// phytomer_parameters_trifoliate.leaf.unique_prototypes = 5;
-
1388//
-
1389// phytomer_parameters_trifoliate.peduncle.length = 0.04;
-
1390// phytomer_parameters_trifoliate.peduncle.radius = 0.001;
-
1391// phytomer_parameters_trifoliate.peduncle.pitch.uniformDistribution(0, 40);
-
1392// phytomer_parameters_trifoliate.peduncle.roll = 90;
-
1393// phytomer_parameters_trifoliate.peduncle.curvature.uniformDistribution(-500, 500);
-
1394// phytomer_parameters_trifoliate.peduncle.length_segments = 1;
-
1395// phytomer_parameters_trifoliate.peduncle.radial_subdivisions = 6;
-
1396//
-
1397// phytomer_parameters_trifoliate.inflorescence.flowers_per_rachis.uniformDistribution(1, 4);
-
1398// phytomer_parameters_trifoliate.inflorescence.flower_offset = 0.2;
-
1399// phytomer_parameters_trifoliate.inflorescence.flower_arrangement_pattern = "opposite";
-
1400// phytomer_parameters_trifoliate.inflorescence.pitch.uniformDistribution(50,70);
-
1401// phytomer_parameters_trifoliate.inflorescence.roll.uniformDistribution(-20,20);
-
1402// phytomer_parameters_trifoliate.inflorescence.flower_prototype_scale = 0.015;
-
1403// phytomer_parameters_trifoliate.inflorescence.flower_prototype_function = BeanFlowerPrototype;
-
1404// phytomer_parameters_trifoliate.inflorescence.fruit_prototype_scale.uniformDistribution(0.08,0.1);
-
1405// phytomer_parameters_trifoliate.inflorescence.fruit_prototype_function = BeanFruitPrototype;
-
1406// phytomer_parameters_trifoliate.inflorescence.fruit_gravity_factor_fraction.uniformDistribution(0.8,1.0);
-
1407//
-
1408// PhytomerParameters phytomer_parameters_unifoliate = phytomer_parameters_trifoliate;
-
1409// phytomer_parameters_unifoliate.internode.pitch = 0;
-
1410// phytomer_parameters_unifoliate.internode.max_vegetative_buds_per_petiole = 0;
-
1411// phytomer_parameters_unifoliate.internode.max_floral_buds_per_petiole = 0;
-
1412// phytomer_parameters_unifoliate.petiole.petioles_per_internode = 2;
-
1413// phytomer_parameters_unifoliate.petiole.length = 0.001;
-
1414// phytomer_parameters_unifoliate.petiole.radius = 0.0004;
-
1415// phytomer_parameters_unifoliate.petiole.pitch.uniformDistribution(60,80);
-
1416// phytomer_parameters_unifoliate.leaf.leaves_per_petiole = 1;
-
1417// phytomer_parameters_unifoliate.leaf.prototype_scale = 0.02;
-
1418// phytomer_parameters_unifoliate.leaf.pitch.uniformDistribution(-10, 10);
-
1419// phytomer_parameters_unifoliate.leaf.prototype_function = BeanLeafPrototype_unifoliate;
-
1420//
-
1421// // ---- Shoot Parameters ---- //
-
1422//
-
1423// ShootParameters shoot_parameters_trifoliate(context_ptr->getRandomGenerator());
-
1424// shoot_parameters_trifoliate.phytomer_parameters = phytomer_parameters_trifoliate;
-
1425// shoot_parameters_trifoliate.phytomer_parameters.phytomer_creation_function = BeanPhytomerCreationFunction;
-
1426//
-
1427// shoot_parameters_trifoliate.max_nodes = 25;
-
1428// shoot_parameters_trifoliate.internode_radius_initial = 0.0005;
-
1429// shoot_parameters_trifoliate.internode_radius_max = 0.003;
-
1430// shoot_parameters_trifoliate.insertion_angle_tip.uniformDistribution(40,60);
-
1432// shoot_parameters_trifoliate.internode_length_max = 0.03;
-
1435// shoot_parameters_trifoliate.base_roll = 90;
-
1436// shoot_parameters_trifoliate.base_yaw.uniformDistribution(-20,20);
-
1437// shoot_parameters_trifoliate.gravitropic_curvature = 300;
-
1438//
-
1439// shoot_parameters_trifoliate.phyllochron = 1;
-
1441// shoot_parameters_trifoliate.elongation_rate = 0.1;
-
1442// shoot_parameters_trifoliate.girth_growth_rate = 0.00025;
-
1443// shoot_parameters_trifoliate.vegetative_bud_break_time = 3;
-
1444// shoot_parameters_trifoliate.vegetative_bud_break_probability = 0.25;
-
1446// shoot_parameters_trifoliate.flower_bud_break_probability.uniformDistribution(0.8,1.0);
-
1447// shoot_parameters_trifoliate.fruit_set_probability = 0.4;
-
1451//
-
1452// shoot_parameters_trifoliate.defineChildShootTypes({"trifoliate"},{1.0});
-
1453//
-
1454//
-
1455// ShootParameters shoot_parameters_unifoliate = shoot_parameters_trifoliate;
-
1456// shoot_parameters_unifoliate.phytomer_parameters = phytomer_parameters_unifoliate;
-
1457// shoot_parameters_unifoliate.max_nodes = 1;
-
1458// shoot_parameters_unifoliate.vegetative_bud_break_probability = 0;
-
1459// shoot_parameters_unifoliate.flower_bud_break_probability = 0;
-
1460// shoot_parameters_unifoliate.insertion_angle_tip = 0;
-
1461// shoot_parameters_unifoliate.insertion_angle_decay_rate = 0;
-
1462// shoot_parameters_unifoliate.vegetative_bud_break_time = 1;
-
1463// shoot_parameters_unifoliate.defineChildShootTypes({"trifoliate"},{1.0});
-
1464//
-
1465// defineShootType("unifoliate",shoot_parameters_unifoliate);
-
1466// defineShootType("trifoliate",shoot_parameters_trifoliate);
+
1345 phytomer_parameters_pistachio.peduncle.length = 0.1;
+
1346 phytomer_parameters_pistachio.peduncle.radius = 0.001;
+
1347 phytomer_parameters_pistachio.peduncle.pitch = 60;
+
1348 phytomer_parameters_pistachio.peduncle.roll = 0;
+
1349 phytomer_parameters_pistachio.peduncle.length_segments = 1;
+
1350 phytomer_parameters_pistachio.peduncle.curvature.uniformDistribution(500,900);
+
1351 phytomer_parameters_pistachio.peduncle.color = make_RGBcolor(0.7, 0.72, 0.7);
+
1352
+
1353 phytomer_parameters_pistachio.inflorescence.flowers_per_peduncle = 16;
+
1354 phytomer_parameters_pistachio.inflorescence.flower_offset = 0.08;
+
1355 phytomer_parameters_pistachio.inflorescence.pitch.uniformDistribution(50, 70);
+
1356 phytomer_parameters_pistachio.inflorescence.roll.uniformDistribution(0, 360);
+
1357 phytomer_parameters_pistachio.inflorescence.flower_prototype_scale = 0.025;
+
1358// phytomer_parameters_pistachio.inflorescence.flower_prototype_function = PistachioFlowerPrototype;
+
1359 phytomer_parameters_pistachio.inflorescence.fruit_prototype_scale = 0.025;
+
1360 phytomer_parameters_pistachio.inflorescence.fruit_prototype_function = PistachioFruitPrototype;
+
1361
+
1362 // ---- Shoot Parameters ---- //
+
1363
+
1364 // Trunk
+
1365 ShootParameters shoot_parameters_trunk(context_ptr->getRandomGenerator());
+
1366 shoot_parameters_trunk.phytomer_parameters = phytomer_parameters_pistachio;
+
1367 shoot_parameters_trunk.phytomer_parameters.internode.phyllotactic_angle = 180;
+
1368 shoot_parameters_trunk.phytomer_parameters.internode.radial_subdivisions = 20;
+
1369 shoot_parameters_trunk.max_nodes = 20;
+
1370 shoot_parameters_trunk.girth_area_factor = 5.f;
+
1371 shoot_parameters_trunk.internode_radius_initial = 0.01;
+
1372 shoot_parameters_trunk.vegetative_bud_break_probability = 0;
+
1373 shoot_parameters_trunk.vegetative_bud_break_time = 0;
+
1374 shoot_parameters_trunk.tortuosity = 5;
+
1375 shoot_parameters_trunk.internode_length_max = 0.05;
+
1376 shoot_parameters_trunk.internode_length_decay_rate = 0;
+
1377 shoot_parameters_trunk.defineChildShootTypes({"proleptic"},{1});
+
1378
+
1379 // Proleptic shoots
+
1380 ShootParameters shoot_parameters_proleptic(context_ptr->getRandomGenerator());
+
1381 shoot_parameters_proleptic.phytomer_parameters = phytomer_parameters_pistachio;
+
1382 shoot_parameters_proleptic.phytomer_parameters.phytomer_creation_function = PistachioPhytomerCreationFunction;
+
1383 shoot_parameters_proleptic.phytomer_parameters.phytomer_callback_function = PistachioPhytomerCallbackFunction;
+
1384 shoot_parameters_proleptic.max_nodes = 20;
+
1385 shoot_parameters_proleptic.phyllochron = 1;
+
1386 shoot_parameters_proleptic.elongation_rate = 0.25;
+
1387 shoot_parameters_proleptic.girth_area_factor = 10.f;
+
1388 shoot_parameters_proleptic.vegetative_bud_break_probability = 0.15;
+
1389 shoot_parameters_proleptic.vegetative_bud_break_time = 0;
+
1390 shoot_parameters_proleptic.leaf_flush_count = 1;
+
1391 shoot_parameters_proleptic.gravitropic_curvature = 500;
+
1392 shoot_parameters_proleptic.tortuosity = 15;
+
1393 shoot_parameters_proleptic.internode_radius_initial = 0.002;
+
1394 shoot_parameters_proleptic.insertion_angle_tip.uniformDistribution( 45, 55);
+
1395 shoot_parameters_proleptic.insertion_angle_decay_rate = 10;
+
1396 shoot_parameters_proleptic.internode_length_max = 0.04;
+
1397 shoot_parameters_proleptic.internode_length_min = 0.02;
+
1398 shoot_parameters_proleptic.internode_length_decay_rate = 0.005;
+
1399 shoot_parameters_proleptic.fruit_set_probability = 0.35;
+
1400 shoot_parameters_proleptic.flower_bud_break_probability = 0.35;
+
1401 shoot_parameters_proleptic.max_terminal_floral_buds = 4;
+
1402 shoot_parameters_proleptic.flowers_require_dormancy = true;
+
1403 shoot_parameters_proleptic.growth_requires_dormancy = true;
+
1404 shoot_parameters_proleptic.determinate_shoot_growth = false;
+
1405
+
1406 defineShootType("trunk", shoot_parameters_trunk);
+
1407 defineShootType("proleptic", shoot_parameters_proleptic);
+
1408
+
1409}
+
1410
+
1411uint PlantArchitecture::buildPistachioTree(const helios::vec3 &base_position) {
+
1412
+
1413 if( shoot_types.empty() ){
+
1414 //automatically initialize almond tree shoots
+
1415 initializePistachioTreeShoots();
+
1416 }
+
1417
+
1418 uint plantID = addPlantInstance(base_position, 0);
+
1419
+
1420 uint uID_trunk = addBaseStemShoot(plantID, 19, make_AxisRotation(context_ptr->randu(0.f, 0.05f * M_PI), context_ptr->randu(0.f, 2.f * M_PI), context_ptr->randu(0.f, 2.f * M_PI)), 0.015, 0.03, 1.f, 1.f, 0, "trunk");
+
1421 appendPhytomerToShoot( plantID, uID_trunk, shoot_types.at("trunk").phytomer_parameters, 0, 0.01, 1, 1);
+
1422
+
1423 plant_instances.at(plantID).shoot_tree.at(uID_trunk)->meristem_is_alive = false;
+
1424
+
1425 auto phytomers = plant_instances.at(plantID).shoot_tree.at(uID_trunk)->phytomers;
+
1426 for( const auto & phytomer : phytomers ){
+
1427 phytomer->removeLeaf();
+
1428 phytomer->setVegetativeBudState(BUD_DEAD);
+
1429 phytomer->setFloralBudState(BUD_DEAD);
+
1430 }
+
1431
+
1432 uint Nscaffolds = 4;//context_ptr->randu(4,5);
+
1433
+
1434 for( int i=0; i<Nscaffolds; i++ ) {
+
1435 float pitch = context_ptr->randu(deg2rad(65), deg2rad(80));
+
1436 uint uID_shoot = addChildShoot( plantID, uID_trunk, getShootNodeCount(plantID,uID_trunk)-i-1, 1, make_AxisRotation(pitch, (float(i) + context_ptr->randu(-0.2f, 0.2f)) / float(Nscaffolds) * 2 * M_PI, 0), 0.007, 0.06, 1.f, 1.f, 0.5, "proleptic", 0);
+
1437
+
1438 }
+
1439
+
1440 makePlantDormant(plantID);
+
1441
+
1442 setPlantPhenologicalThresholds(plantID, 0, -1, -1, 4, 8, 20, false);
+
1443
+
1444 return plantID;
+
1445
+
1446}
+
1447
+
1448void PlantArchitecture::initializePuncturevineShoots() {
+
1449
+
1450 // ---- Phytomer Parameters ---- //
+
1451
+
1452 PhytomerParameters phytomer_parameters_puncturevine(context_ptr->getRandomGenerator());
+
1453
+
1454 phytomer_parameters_puncturevine.internode.pitch.uniformDistribution(0,15);
+
1455 phytomer_parameters_puncturevine.internode.phyllotactic_angle = 180.f;
+
1456 phytomer_parameters_puncturevine.internode.color = make_RGBcolor(0.55, 0.52, 0.39);
+
1457 phytomer_parameters_puncturevine.internode.length_segments = 1;
+
1458
+
1459 phytomer_parameters_puncturevine.petiole.petioles_per_internode = 1;
+
1460 phytomer_parameters_puncturevine.petiole.pitch.uniformDistribution(80, 100);
+
1461 phytomer_parameters_puncturevine.petiole.radius = 0.0003;
+
1462 phytomer_parameters_puncturevine.petiole.length = 0.025;
+
1463 phytomer_parameters_puncturevine.petiole.taper = 0;
+
1464 phytomer_parameters_puncturevine.petiole.curvature = 0;
+
1465 phytomer_parameters_puncturevine.petiole.color = phytomer_parameters_puncturevine.internode.color;
+
1466 phytomer_parameters_puncturevine.petiole.length_segments = 1;
1467
-
1468
-
1469}
-
1470
-
1471uint PlantArchitecture::buildSoybeanPlant(const helios::vec3 &base_position, float age) {
-
1472
-
1473 if (shoot_types.empty()) {
-
1474 //automatically initialize bean plant shoots
-
1475 initializeSoybeanShoots();
-
1476 }
+
1468 phytomer_parameters_puncturevine.leaf.leaves_per_petiole = 11;
+
1469 phytomer_parameters_puncturevine.leaf.pitch.uniformDistribution(-10,10);
+
1470 phytomer_parameters_puncturevine.leaf.yaw = 30;
+
1471 phytomer_parameters_puncturevine.leaf.roll.uniformDistribution(-5,5);
+
1472 phytomer_parameters_puncturevine.leaf.prototype_function = PuncturevineLeafPrototype;
+
1473 phytomer_parameters_puncturevine.leaf.prototype_scale = 0.008;
+
1474 phytomer_parameters_puncturevine.leaf.leaflet_offset = 0.15;
+
1475 phytomer_parameters_puncturevine.leaf.leaflet_scale = 1;
+
1476 phytomer_parameters_puncturevine.leaf.subdivisions = 3;
1477
-
1478 uint plantID = addPlantInstance(base_position, age);
-
1479
-
1480 AxisRotation base_rotation = make_AxisRotation(context_ptr->randu(0.f, 0.05f * M_PI), context_ptr->randu(0.f, 2.f * M_PI), context_ptr->randu(0.f, 2.f * M_PI));
-
1481 uint uID_unifoliate = addBaseStemShoot(plantID, 1, base_rotation, 0.0005, 0.01, 0.01, 0.01, 0, "unifoliate");
-
1482
-
1483 appendShoot(plantID, uID_unifoliate, 1, make_AxisRotation(0, 0, 0.5f * M_PI), shoot_types.at("trifoliate").internode_radius_initial.val(), shoot_types.at("trifoliate").internode_length_max.val(), 0.1, 0.1, 0, "trifoliate");
-
1484
-
1485 breakPlantDormancy(plantID);
-
1486
-
1487 setPlantPhenologicalThresholds(plantID, 0, 15, 3, 3, 5, 100);
-
1488
-
1489 return plantID;
-
1490
-
1491}
-
1492
-
1493void PlantArchitecture::initializeStrawberryShoots() {
-
1494
-
1495 // ---- Phytomer Parameters ---- //
-
1496
-
1497 PhytomerParameters phytomer_parameters(context_ptr->getRandomGenerator());
-
1498
-
1499 phytomer_parameters.internode.pitch = 10;
-
1500 phytomer_parameters.internode.phyllotactic_angle.uniformDistribution(80,100);
-
1501 phytomer_parameters.internode.color = make_RGBcolor(0.38, 0.48, 0.1);
-
1502 phytomer_parameters.internode.length_segments = 1;
-
1503
-
1504 phytomer_parameters.petiole.petioles_per_internode = 1;
-
1505 phytomer_parameters.petiole.pitch.uniformDistribution(10,45);
-
1506 phytomer_parameters.petiole.radius = 0.003;
-
1507 phytomer_parameters.petiole.length = 0.2;
-
1508 phytomer_parameters.petiole.taper = 0.5;
-
1509 phytomer_parameters.petiole.curvature.uniformDistribution(-200,100);
-
1510 phytomer_parameters.petiole.color = make_RGBcolor(0.24, 0.28, 0.08);
-
1511 phytomer_parameters.petiole.length_segments = 5;
-
1512
-
1513 phytomer_parameters.leaf.leaves_per_petiole = 3;
-
1514 phytomer_parameters.leaf.pitch.uniformDistribution(-30,-15);
-
1515 phytomer_parameters.leaf.yaw = 20;
-
1516 phytomer_parameters.leaf.roll = -30;
-
1517 phytomer_parameters.leaf.leaflet_offset = 0.01;
-
1518 phytomer_parameters.leaf.leaflet_scale = 1.0;
-
1519 phytomer_parameters.leaf.prototype_function = StrawberryLeafPrototype;
-
1520 phytomer_parameters.leaf.prototype_scale = 0.1;
-
1521 phytomer_parameters.leaf.subdivisions = 6;
-
1522 phytomer_parameters.leaf.unique_prototypes = 5;
-
1523
-
1524 phytomer_parameters.peduncle.length = 0.17;
-
1525 phytomer_parameters.peduncle.radius = 0.00075;
-
1526 phytomer_parameters.peduncle.pitch = 35;
-
1527 phytomer_parameters.peduncle.roll = 0;
-
1528 phytomer_parameters.peduncle.curvature = -200;
-
1529 phytomer_parameters.peduncle.length_segments = 5;
-
1530 phytomer_parameters.peduncle.radial_subdivisions = 6;
-
1531 phytomer_parameters.peduncle.color = phytomer_parameters.petiole.color;
+
1478 phytomer_parameters_puncturevine.peduncle.length = 0.001;
+
1479 phytomer_parameters_puncturevine.inflorescence.flowers_per_peduncle = 1;
+
1480 phytomer_parameters_puncturevine.inflorescence.pitch = -90.f;
+
1481 phytomer_parameters_puncturevine.inflorescence.flower_prototype_function = PuncturevineFlowerPrototype;
+
1482 phytomer_parameters_puncturevine.inflorescence.flower_prototype_scale = 0.006;
+
1483
+
1484 // ---- Shoot Parameters ---- //
+
1485
+
1486 ShootParameters shoot_parameters_primary(context_ptr->getRandomGenerator());
+
1487 shoot_parameters_primary.phytomer_parameters = phytomer_parameters_puncturevine;
+
1488 shoot_parameters_primary.vegetative_bud_break_probability = 0.3;
+
1489 shoot_parameters_primary.vegetative_bud_break_time = 3;
+
1490 shoot_parameters_primary.base_roll = 90;
+
1491 shoot_parameters_primary.internode_radius_initial = 0.001;
+
1492 shoot_parameters_primary.phyllochron = 1;
+
1493 shoot_parameters_primary.elongation_rate = 0.2;
+
1494 shoot_parameters_primary.girth_area_factor = 0.f;
+
1495 shoot_parameters_primary.internode_length_max = 0.02;
+
1496 shoot_parameters_primary.internode_length_decay_rate = 0;
+
1497 shoot_parameters_primary.insertion_angle_tip.uniformDistribution(50, 80);
+
1498 shoot_parameters_primary.flowers_require_dormancy = false;
+
1499 shoot_parameters_primary.growth_requires_dormancy = false;
+
1500 shoot_parameters_primary.flower_bud_break_probability = 0.2;
+
1501 shoot_parameters_primary.determinate_shoot_growth = false;
+
1502 shoot_parameters_primary.max_nodes = 15;
+
1503 shoot_parameters_primary.gravitropic_curvature = 20;
+
1504 shoot_parameters_primary.tortuosity = 0;
+
1505 shoot_parameters_primary.defineChildShootTypes({"secondary_puncturevine"}, {1.f});
+
1506
+
1507 ShootParameters shoot_parameters_base = shoot_parameters_primary;
+
1508 shoot_parameters_base.phytomer_parameters = phytomer_parameters_puncturevine;
+
1509 shoot_parameters_base.phytomer_parameters.internode.phyllotactic_angle.uniformDistribution(137.5-10,137.5+10);
+
1510 shoot_parameters_base.phytomer_parameters.petiole.petioles_per_internode = 0;
+
1511 shoot_parameters_base.phytomer_parameters.internode.pitch = 0;
+
1512 shoot_parameters_base.phytomer_parameters.petiole.pitch = 0;
+
1513 shoot_parameters_base.vegetative_bud_break_probability = 1;
+
1514 shoot_parameters_base.vegetative_bud_break_time = 1;
+
1515 shoot_parameters_base.internode_radius_initial = 0.001;
+
1516 shoot_parameters_base.phyllochron = 1;
+
1517 shoot_parameters_base.elongation_rate = 0.25;
+
1518 shoot_parameters_base.gravitropic_curvature = 0;
+
1519 shoot_parameters_base.internode_length_max = 0.01;
+
1520 shoot_parameters_base.internode_length_decay_rate = 0;
+
1521 shoot_parameters_base.insertion_angle_tip = 90;
+
1522 shoot_parameters_base.insertion_angle_decay_rate = 0;
+
1523 shoot_parameters_base.internode_radius_initial = 0.0005;
+
1524 shoot_parameters_base.flowers_require_dormancy = false;
+
1525 shoot_parameters_base.growth_requires_dormancy = false;
+
1526 shoot_parameters_base.flower_bud_break_probability = 0.0;
+
1527 shoot_parameters_base.max_nodes.uniformDistribution(3,5);
+
1528 shoot_parameters_base.defineChildShootTypes({"primary_puncturevine"},{1.f});
+
1529
+
1530 ShootParameters shoot_parameters_children = shoot_parameters_primary;
+
1531 shoot_parameters_children.base_roll = 0;
1532
-
1533 phytomer_parameters.inflorescence.flowers_per_rachis.uniformDistribution(1,3);
-
1534 phytomer_parameters.inflorescence.flower_offset = 0.2;
-
1535 phytomer_parameters.inflorescence.flower_arrangement_pattern = "alternate";
-
1536 phytomer_parameters.inflorescence.pitch = 70;
-
1537 phytomer_parameters.inflorescence.roll = 90;
-
1538 phytomer_parameters.inflorescence.flower_prototype_scale = 0.04;
-
1539 phytomer_parameters.inflorescence.flower_prototype_function = StrawberryFlowerPrototype;
-
1540 phytomer_parameters.inflorescence.fruit_prototype_scale = 0.06;
-
1541 phytomer_parameters.inflorescence.fruit_prototype_function = StrawberryFruitPrototype;
-
1542 phytomer_parameters.inflorescence.fruit_gravity_factor_fraction = 0.65;
-
1543
-
1544 // ---- Shoot Parameters ---- //
+
1533 defineShootType("base_puncturevine", shoot_parameters_base);
+
1534 defineShootType("primary_puncturevine", shoot_parameters_primary);
+
1535 defineShootType("secondary_puncturevine", shoot_parameters_children);
+
1536
+
1537}
+
1538
+
1539uint PlantArchitecture::buildPuncturevinePlant(const helios::vec3 &base_position) {
+
1540
+
1541 if (shoot_types.empty()) {
+
1542 //automatically initialize puncturevine plant shoots
+
1543 initializePuncturevineShoots();
+
1544 }
1545
-
1546 ShootParameters shoot_parameters(context_ptr->getRandomGenerator());
-
1547 shoot_parameters.phytomer_parameters = phytomer_parameters;
-
1548
-
1549 shoot_parameters.max_nodes = 15;
-
1550 shoot_parameters.internode_radius_initial = 0.001;
-
1551 shoot_parameters.internode_radius_max = 0.005;
-
1552 shoot_parameters.insertion_angle_tip = 40;
-
1553 shoot_parameters.insertion_angle_decay_rate = 0;
-
1554 shoot_parameters.internode_length_max = 0.01;
-
1555 shoot_parameters.internode_length_decay_rate = 0;
-
1556 shoot_parameters.internode_length_min = 0.0;
-
1557 shoot_parameters.base_roll = 90;
-
1558 shoot_parameters.base_yaw.uniformDistribution(-20,20);
-
1559 shoot_parameters.gravitropic_curvature.uniformDistribution(-10,0);
-
1560 shoot_parameters.tortuosity = 0;
+
1546 uint plantID = addPlantInstance(base_position, 0);
+
1547
+
1548 uint uID_stem = addBaseStemShoot(plantID, 3, make_AxisRotation(0, 0.f, 0.f), 0.001, 0.001, 1, 1, 0, "base_puncturevine");
+
1549
+
1550 breakPlantDormancy(plantID);
+
1551
+
1552 setPlantPhenologicalThresholds(plantID, 0, -1, 7, 1000, 5, 100, false);
+
1553
+
1554 return plantID;
+
1555
+
1556}
+
1557
+
1558void PlantArchitecture::initializeEasternRedbudShoots() {
+
1559
+
1560 // ---- Phytomer Parameters ---- //
1561
-
1562 shoot_parameters.phyllochron = 1.;
-
1563 shoot_parameters.leaf_flush_count = 1;
-
1564 shoot_parameters.elongation_rate = 0.1;
-
1565 shoot_parameters.girth_growth_rate = 0.0003;
-
1566 shoot_parameters.vegetative_bud_break_time = 3;
-
1567 shoot_parameters.vegetative_bud_break_probability = 0.25;
-
1568 shoot_parameters.flower_bud_break_probability = 1;
-
1569 shoot_parameters.fruit_set_probability = 0.5;
-
1570 shoot_parameters.flowers_require_dormancy = false;
-
1571 shoot_parameters.growth_requires_dormancy = false;
-
1572 shoot_parameters.determinate_shoot_growth = true;
-
1573
-
1574 shoot_parameters.defineChildShootTypes({"mainstem"},{1.0});
-
1575
-
1576 defineShootType("mainstem",shoot_parameters);
-
1577
-
1578}
-
1579
-
1580uint PlantArchitecture::buildStrawberryPlant(const helios::vec3 &base_position, float age) {
-
1581
-
1582 if (shoot_types.empty()) {
-
1583 //automatically initialize strawberry plant shoots
-
1584 initializeStrawberryShoots();
-
1585 }
-
1586
-
1587 uint plantID = addPlantInstance(base_position, age);
+
1562 PhytomerParameters phytomer_parameters_redbud(context_ptr->getRandomGenerator());
+
1563
+
1564 phytomer_parameters_redbud.internode.pitch = 15;
+
1565 phytomer_parameters_redbud.internode.phyllotactic_angle.uniformDistribution(170,190);
+
1566// phytomer_parameters_redbud.internode.color = make_RGBcolor(0.55, 0.52, 0.39);
+
1567 phytomer_parameters_redbud.internode.image_texture = "plugins/plantarchitecture/assets/textures/WesternRedbudBark.jpg";
+
1568 phytomer_parameters_redbud.internode.color.scale(0.3);
+
1569 phytomer_parameters_redbud.internode.length_segments = 1;
+
1570 phytomer_parameters_redbud.internode.max_floral_buds_per_petiole = 5;
+
1571
+
1572 phytomer_parameters_redbud.petiole.petioles_per_internode = 1;
+
1573 phytomer_parameters_redbud.petiole.color = make_RGBcolor(0.65, 0.52, 0.39);
+
1574 phytomer_parameters_redbud.petiole.pitch.uniformDistribution(20, 40);
+
1575 phytomer_parameters_redbud.petiole.radius = 0.0017;
+
1576 phytomer_parameters_redbud.petiole.length = 0.05;
+
1577 phytomer_parameters_redbud.petiole.taper = 0;
+
1578 phytomer_parameters_redbud.petiole.curvature = 0;
+
1579 phytomer_parameters_redbud.petiole.length_segments = 1;
+
1580
+
1581 phytomer_parameters_redbud.leaf.leaves_per_petiole = 1;
+
1582 phytomer_parameters_redbud.leaf.pitch.uniformDistribution(-110, -80);
+
1583 phytomer_parameters_redbud.leaf.yaw = 0;
+
1584 phytomer_parameters_redbud.leaf.roll.uniformDistribution(-5, 5);
+
1585 phytomer_parameters_redbud.leaf.prototype_function = RedbudLeafPrototype;
+
1586 phytomer_parameters_redbud.leaf.prototype_scale = 0.1;
+
1587 phytomer_parameters_redbud.leaf.subdivisions = 5;
1588
-
1589 AxisRotation base_rotation = make_AxisRotation(0, context_ptr->randu(0.f, 2.f * M_PI), context_ptr->randu(0.f, 2.f * M_PI));
-
1590 uint uID_stem = addBaseStemShoot(plantID, 1, base_rotation, 0.001, 0.004, 0.01, 0.01, 0, "mainstem");
-
1591
-
1592 breakPlantDormancy(plantID);
-
1593
-
1594 setPlantPhenologicalThresholds(plantID, 0, -1, 10, 3, 1, 100);
-
1595
-
1596 return plantID;
-
1597
-
1598}
-
1599
-
1600void PlantArchitecture::initializeSugarbeetShoots() {
-
1601
-
1602 // ---- Phytomer Parameters ---- //
+
1589 phytomer_parameters_redbud.peduncle.length = 0.02;
+
1590 phytomer_parameters_redbud.peduncle.pitch.uniformDistribution(50,90);
+
1591 phytomer_parameters_redbud.peduncle.color = make_RGBcolor(0.32, 0.05, 0.13);
+
1592
+
1593 phytomer_parameters_redbud.inflorescence.flowers_per_peduncle = 1;
+
1594 phytomer_parameters_redbud.inflorescence.pitch = 0;
+
1595 phytomer_parameters_redbud.inflorescence.flower_prototype_function = RedbudFlowerPrototype;
+
1596 phytomer_parameters_redbud.inflorescence.flower_prototype_scale = 0.04;
+
1597 phytomer_parameters_redbud.inflorescence.fruit_prototype_function = RedbudFruitPrototype;
+
1598 phytomer_parameters_redbud.inflorescence.fruit_prototype_scale = 0.1;
+
1599 phytomer_parameters_redbud.inflorescence.fruit_gravity_factor_fraction = 0.7;
+
1600
+
1601 phytomer_parameters_redbud.phytomer_creation_function = RedbudPhytomerCreationFunction;
+
1602 phytomer_parameters_redbud.phytomer_callback_function = RedbudPhytomerCallbackFunction;
1603
-
1604 PhytomerParameters phytomer_parameters_sugarbeet(context_ptr->getRandomGenerator());
+
1604 // ---- Shoot Parameters ---- //
1605
-
1606 phytomer_parameters_sugarbeet.internode.pitch = 0;
-
1607 phytomer_parameters_sugarbeet.internode.phyllotactic_angle = 137.5;
-
1608 phytomer_parameters_sugarbeet.internode.color = make_RGBcolor(0.44,0.58,0.19);
-
1609 phytomer_parameters_sugarbeet.internode.length_segments = 2;
-
1610
-
1611 phytomer_parameters_sugarbeet.petiole.petioles_per_internode = 1;
-
1612 phytomer_parameters_sugarbeet.petiole.pitch.uniformDistribution(0,40);
-
1613 phytomer_parameters_sugarbeet.petiole.radius = 0.005;
-
1614 phytomer_parameters_sugarbeet.petiole.length.uniformDistribution(0.15,0.2);
-
1615 phytomer_parameters_sugarbeet.petiole.taper = 0.6;
-
1616 phytomer_parameters_sugarbeet.petiole.curvature.uniformDistribution(-300,100);
-
1617 phytomer_parameters_sugarbeet.petiole.color = phytomer_parameters_sugarbeet.internode.color;
-
1618 phytomer_parameters_sugarbeet.petiole.length_segments = 8;
-
1619
-
1620 phytomer_parameters_sugarbeet.leaf.leaves_per_petiole = 1;
-
1621 phytomer_parameters_sugarbeet.leaf.pitch.uniformDistribution(-10,0);
-
1622 phytomer_parameters_sugarbeet.leaf.yaw.uniformDistribution(-5,5);
-
1623 phytomer_parameters_sugarbeet.leaf.roll.uniformDistribution(-15,15);
-
1624 phytomer_parameters_sugarbeet.leaf.prototype_function = SugarbeetLeafPrototype;
-
1625 phytomer_parameters_sugarbeet.leaf.prototype_scale.uniformDistribution(0.15,0.25);
-
1626 phytomer_parameters_sugarbeet.leaf.subdivisions = 40;
-
1627
-
1628 // ---- Shoot Parameters ---- //
+
1606 ShootParameters shoot_parameters_main(context_ptr->getRandomGenerator());
+
1607 shoot_parameters_main.phytomer_parameters = phytomer_parameters_redbud;
+
1608 shoot_parameters_main.vegetative_bud_break_probability = 1.0;
+
1609 shoot_parameters_main.vegetative_bud_break_time = 1;
+
1610 shoot_parameters_main.phyllochron = 1.5;
+
1611 shoot_parameters_main.elongation_rate = 0.17;
+
1612 shoot_parameters_main.girth_area_factor = 3.f;
+
1613 shoot_parameters_main.gravitropic_curvature = 300;
+
1614 shoot_parameters_main.tortuosity = 20;
+
1615 shoot_parameters_main.internode_length_max = 0.04;
+
1616 shoot_parameters_main.internode_length_decay_rate = 0.005;
+
1617 shoot_parameters_main.insertion_angle_tip = 75;
+
1618 shoot_parameters_main.insertion_angle_decay_rate = 10;
+
1619 shoot_parameters_main.internode_radius_initial = 0.0015;
+
1620 shoot_parameters_main.internode_radius_max = 0.02;
+
1621 shoot_parameters_main.flowers_require_dormancy = true;
+
1622 shoot_parameters_main.growth_requires_dormancy = true;
+
1623 shoot_parameters_main.determinate_shoot_growth = false;
+
1624 shoot_parameters_main.max_terminal_floral_buds = 0;
+
1625 shoot_parameters_main.flower_bud_break_probability = 0.8;
+
1626 shoot_parameters_main.fruit_set_probability = 0.3;
+
1627 shoot_parameters_main.max_nodes = 30;
+
1628 shoot_parameters_main.base_roll = 90;
1629
-
1630 ShootParameters shoot_parameters_mainstem(context_ptr->getRandomGenerator());
-
1631 shoot_parameters_mainstem.phytomer_parameters = phytomer_parameters_sugarbeet;
-
1632 shoot_parameters_mainstem.vegetative_bud_break_probability = 0;
-
1633 shoot_parameters_mainstem.internode_radius_initial = 0.005;
-
1634 shoot_parameters_mainstem.phyllochron = 1;
-
1635 shoot_parameters_mainstem.elongation_rate = 0.25;
-
1636 shoot_parameters_mainstem.girth_growth_rate = 0;
-
1637 shoot_parameters_mainstem.gravitropic_curvature = 10;
-
1638 shoot_parameters_mainstem.internode_length_max = 0.001;
-
1639 shoot_parameters_mainstem.internode_length_decay_rate = 0;
-
1640 shoot_parameters_mainstem.flowers_require_dormancy = false;
-
1641 shoot_parameters_mainstem.growth_requires_dormancy = false;
-
1642 shoot_parameters_mainstem.flower_bud_break_probability = 0.0;
-
1643 shoot_parameters_mainstem.max_nodes = 30;
-
1644
-
1645 defineShootType("mainstem",shoot_parameters_mainstem);
-
1646
+
1630 ShootParameters shoot_parameters_trunk = shoot_parameters_main;
+
1631 shoot_parameters_trunk.phytomer_parameters.internode.pitch = 0;
+
1632 shoot_parameters_trunk.phytomer_parameters.internode.radial_subdivisions = 15;
+
1633 shoot_parameters_trunk.phytomer_parameters.internode.max_floral_buds_per_petiole = 0;
+
1634 shoot_parameters_trunk.internode_radius_max = 1;
+
1635 shoot_parameters_trunk.phyllochron = 1.25;
+
1636 shoot_parameters_trunk.insertion_angle_tip = 60;
+
1637 shoot_parameters_trunk.max_nodes = 45;
+
1638 shoot_parameters_trunk.tortuosity = 5;
+
1639 shoot_parameters_trunk.defineChildShootTypes({"eastern_redbud_shoot"},{1.f});
+
1640
+
1641 defineShootType("eastern_redbud_trunk", shoot_parameters_trunk);
+
1642 defineShootType("eastern_redbud_shoot", shoot_parameters_main);
+
1643
+
1644}
+
1645
+
1646uint PlantArchitecture::buildEasternRedbudPlant(const helios::vec3 &base_position) {
1647
-
1648}
-
1649
-
1650uint PlantArchitecture::buildSugarbeetPlant(const helios::vec3 &base_position, float age) {
-
1651
-
1652 if (shoot_types.empty()) {
-
1653 //automatically initialize sugarbeet plant shoots
-
1654 initializeSugarbeetShoots();
-
1655 }
+
1648 if (shoot_types.empty()) {
+
1649 //automatically initialize redbud plant shoots
+
1650 initializeEasternRedbudShoots();
+
1651 }
+
1652
+
1653 uint plantID = addPlantInstance(base_position, 0);
+
1654
+
1655 uint uID_stem = addBaseStemShoot(plantID, 16, make_AxisRotation(context_ptr->randu(0,0.1*M_PI), context_ptr->randu(0,2*M_PI), context_ptr->randu(0,2*M_PI)), 0.0075, 0.05, 1, 1, 0.4, "eastern_redbud_trunk");
1656
-
1657 uint plantID = addPlantInstance(base_position, age);
+
1657 makePlantDormant(plantID);
1658
-
1659 uint uID_stem = addBaseStemShoot(plantID, 3, make_AxisRotation(context_ptr->randu(0.f, 0.01f * M_PI), 0.f * context_ptr->randu(0.f, 2.f * M_PI), 0.25f * M_PI), 0.005, 0.001, 1, 1, 0, "mainstem");
+
1659 removeShootLeaves( plantID, uID_stem );
1660
-
1661 breakPlantDormancy(plantID);
+
1661 setPlantPhenologicalThresholds(plantID, 0, -1, 1, 3, 3, 12, false);
1662
-
1663 setPlantPhenologicalThresholds(plantID, 0, 1000, 10, 60, 5, 100);
+
1663 return plantID;
1664
-
1665 return plantID;
+
1665}
1666
-
1667}
+
1667void PlantArchitecture::initializeRomaineLettuceShoots() {
1668
-
1669void PlantArchitecture::initializeTomatoShoots() {
+
1669 // ---- Phytomer Parameters ---- //
1670
-
1671 // ---- Phytomer Parameters ---- //
+
1671 PhytomerParameters phytomer_parameters(context_ptr->getRandomGenerator());
1672
-
1673 PhytomerParameters phytomer_parameters(context_ptr->getRandomGenerator());
-
1674
-
1675 phytomer_parameters.internode.pitch = 10;
-
1676 phytomer_parameters.internode.phyllotactic_angle.uniformDistribution(145, 215);
-
1677 phytomer_parameters.internode.color = make_RGBcolor(0.213, 0.270, 0.056);
-
1678 phytomer_parameters.internode.length_segments = 1;
-
1679
-
1680 phytomer_parameters.petiole.petioles_per_internode = 1;
-
1681 phytomer_parameters.petiole.pitch.uniformDistribution(45,60);
-
1682 phytomer_parameters.petiole.radius = 0.002;
-
1683 phytomer_parameters.petiole.length = 0.3;
-
1684 phytomer_parameters.petiole.taper = 0.15;
-
1685 phytomer_parameters.petiole.curvature.uniformDistribution(-150,-50);
-
1686 phytomer_parameters.petiole.color = phytomer_parameters.internode.color;
-
1687 phytomer_parameters.petiole.length_segments = 5;
-
1688
-
1689 phytomer_parameters.leaf.leaves_per_petiole = 7;
-
1690 phytomer_parameters.leaf.pitch.uniformDistribution(-30, 5);
-
1691 phytomer_parameters.leaf.yaw = 10;
-
1692 phytomer_parameters.leaf.roll = 0;
-
1693 phytomer_parameters.leaf.leaflet_offset = 0.15;
-
1694 phytomer_parameters.leaf.leaflet_scale = 0.7;
-
1695 phytomer_parameters.leaf.prototype_function = TomatoLeafPrototype;
-
1696 phytomer_parameters.leaf.prototype_scale.uniformDistribution(0.1,0.14);
-
1697 phytomer_parameters.leaf.subdivisions = 6;
-
1698 phytomer_parameters.leaf.unique_prototypes = 5;
-
1699
-
1700 phytomer_parameters.peduncle.length = 0.16;
-
1701 phytomer_parameters.peduncle.radius = 0.0015;
-
1702 phytomer_parameters.peduncle.pitch = 20;
-
1703 phytomer_parameters.peduncle.roll = 0;
-
1704 phytomer_parameters.peduncle.curvature = -700;
-
1705 phytomer_parameters.peduncle.color = phytomer_parameters.internode.color;
-
1706 phytomer_parameters.peduncle.length_segments = 5;
-
1707 phytomer_parameters.peduncle.radial_subdivisions = 8;
-
1708
-
1709 phytomer_parameters.inflorescence.flowers_per_rachis = 8;
-
1710 phytomer_parameters.inflorescence.flower_offset = 0.15;
-
1711 phytomer_parameters.inflorescence.flower_arrangement_pattern = "opposite";
-
1712 phytomer_parameters.inflorescence.pitch = 90;
-
1713 phytomer_parameters.inflorescence.roll.uniformDistribution(-30,30);
-
1714 phytomer_parameters.inflorescence.flower_prototype_scale = 0.03;
-
1715 phytomer_parameters.inflorescence.flower_prototype_function = TomatoFlowerPrototype;
-
1716 phytomer_parameters.inflorescence.fruit_prototype_scale = 0.04;
-
1717 phytomer_parameters.inflorescence.fruit_prototype_function = TomatoFruitPrototype;
-
1718 phytomer_parameters.inflorescence.fruit_gravity_factor_fraction = 0.5;
-
1719
-
1720 // ---- Shoot Parameters ---- //
-
1721
-
1722 ShootParameters shoot_parameters(context_ptr->getRandomGenerator());
-
1723 shoot_parameters.phytomer_parameters = phytomer_parameters;
-
1724 shoot_parameters.phytomer_parameters.phytomer_creation_function = TomatoPhytomerCreationFunction;
+
1673 phytomer_parameters.internode.pitch = 0;
+
1674 phytomer_parameters.internode.phyllotactic_angle = 137.5;
+
1675 phytomer_parameters.internode.color = make_RGBcolor(0.402,0.423,0.413);
+
1676 phytomer_parameters.internode.length_segments = 1;
+
1677 phytomer_parameters.internode.radial_subdivisions = 10;
+
1678
+
1679 phytomer_parameters.petiole.petioles_per_internode = 1;
+
1680 phytomer_parameters.petiole.pitch.uniformDistribution(0,30);
+
1681 phytomer_parameters.petiole.radius = 0.001;
+
1682 phytomer_parameters.petiole.length = 0.001;
+
1683 phytomer_parameters.petiole.length_segments = 1;
+
1684 phytomer_parameters.petiole.radial_subdivisions = 3;
+
1685 phytomer_parameters.petiole.color = RGB::red;
+
1686
+
1687 phytomer_parameters.leaf.leaves_per_petiole = 1;
+
1688 phytomer_parameters.leaf.pitch = 0;
+
1689 phytomer_parameters.leaf.yaw = 0;
+
1690 phytomer_parameters.leaf.roll = 0;
+
1691 phytomer_parameters.leaf.prototype_function = RomaineLettuceLeafPrototype;
+
1692 phytomer_parameters.leaf.prototype_scale.uniformDistribution(0.15,0.25);
+
1693 phytomer_parameters.leaf.subdivisions = 30;
+
1694
+
1695 phytomer_parameters.phytomer_creation_function = RomaineLettucePhytomerCreationFunction;
+
1696
+
1697 // ---- Shoot Parameters ---- //
+
1698
+
1699 ShootParameters shoot_parameters_mainstem(context_ptr->getRandomGenerator());
+
1700 shoot_parameters_mainstem.phytomer_parameters = phytomer_parameters;
+
1701 shoot_parameters_mainstem.vegetative_bud_break_probability = 0;
+
1702 shoot_parameters_mainstem.internode_radius_initial = 0.01;
+
1703 shoot_parameters_mainstem.phyllochron = 1;
+
1704 shoot_parameters_mainstem.elongation_rate = 0.15;
+
1705 shoot_parameters_mainstem.girth_area_factor = 0.f;
+
1706 shoot_parameters_mainstem.gravitropic_curvature = 10;
+
1707 shoot_parameters_mainstem.internode_length_max = 0.001;
+
1708 shoot_parameters_mainstem.internode_length_decay_rate = 0;
+
1709 shoot_parameters_mainstem.flowers_require_dormancy = false;
+
1710 shoot_parameters_mainstem.growth_requires_dormancy = false;
+
1711 shoot_parameters_mainstem.flower_bud_break_probability = 0.0;
+
1712 shoot_parameters_mainstem.max_nodes = 25;
+
1713
+
1714 defineShootType("mainstem",shoot_parameters_mainstem);
+
1715
+
1716
+
1717}
+
1718
+
1719uint PlantArchitecture::buildRomaineLettucePlant(const helios::vec3 &base_position) {
+
1720
+
1721 if (shoot_types.empty()) {
+
1722 //automatically initialize sugarbeet plant shoots
+
1723 initializeSugarbeetShoots();
+
1724 }
1725
-
1726 shoot_parameters.max_nodes = 20;
-
1727 shoot_parameters.internode_radius_initial = 0.001;
-
1728 shoot_parameters.internode_radius_max = 0.009;
-
1729 shoot_parameters.insertion_angle_tip = 30;
-
1730 shoot_parameters.insertion_angle_decay_rate = 0;
-
1731 shoot_parameters.internode_length_max = 0.04;
-
1732 shoot_parameters.internode_length_min = 0.0;
-
1733 shoot_parameters.internode_length_decay_rate = 0;
-
1734 shoot_parameters.base_roll = 90;
-
1735 shoot_parameters.base_yaw.uniformDistribution(-20,20);
-
1736 shoot_parameters.gravitropic_curvature = -20;
-
1737 shoot_parameters.tortuosity = 0;
-
1738
-
1739 shoot_parameters.phyllochron = 1;
-
1740 shoot_parameters.leaf_flush_count = 1;
-
1741 shoot_parameters.elongation_rate = 0.1;
-
1742 shoot_parameters.girth_growth_rate = 0.0002;
-
1743 shoot_parameters.vegetative_bud_break_time = 3;
-
1744 shoot_parameters.vegetative_bud_break_probability = 0.6;
-
1745 shoot_parameters.flower_bud_break_probability = 0.5;
-
1746 shoot_parameters.fruit_set_probability = 0.5;
-
1747 shoot_parameters.flowers_require_dormancy = false;
-
1748 shoot_parameters.growth_requires_dormancy = false;
-
1749 shoot_parameters.determinate_shoot_growth = true;
-
1750
-
1751 shoot_parameters.defineChildShootTypes({"mainstem"},{1.0});
-
1752
-
1753 defineShootType("mainstem",shoot_parameters);
-
1754
-
1755}
-
1756
-
1757uint PlantArchitecture::buildTomatoPlant(const helios::vec3 &base_position, float age) {
-
1758
-
1759 if (shoot_types.empty()) {
-
1760 //automatically initialize tomato plant shoots
-
1761 initializeTomatoShoots();
-
1762 }
-
1763
-
1764 uint plantID = addPlantInstance(base_position, age);
-
1765
-
1766 AxisRotation base_rotation = make_AxisRotation(0, context_ptr->randu(0.f, 2.f * M_PI), context_ptr->randu(0.f, 2.f * M_PI));
-
1767 uint uID_stem = addBaseStemShoot(plantID, 1, base_rotation, 0.002, 0.04, 0.01, 0.01, 0, "mainstem");
+
1726 uint plantID = addPlantInstance(base_position, 0);
+
1727
+
1728 uint uID_stem = addBaseStemShoot(plantID, 3, make_AxisRotation(context_ptr->randu(0.f, 0.03f * M_PI), context_ptr->randu(0.f, 2.f * M_PI), 0.25f * M_PI), 0.005, 0.001, 1, 1, 0, "mainstem");
+
1729
+
1730 breakPlantDormancy(plantID);
+
1731
+
1732 setPlantPhenologicalThresholds(plantID, 0, 1000, 10, 60, 5, 100, false);
+
1733
+
1734 return plantID;
+
1735
+
1736}
+
1737
+
1738void PlantArchitecture::initializeSorghumShoots() {
+
1739
+
1740 // ---- Phytomer Parameters ---- //
+
1741
+
1742 PhytomerParameters phytomer_parameters_sorghum(context_ptr->getRandomGenerator());
+
1743
+
1744 phytomer_parameters_sorghum.internode.pitch = 0;
+
1745 phytomer_parameters_sorghum.internode.phyllotactic_angle.uniformDistribution(170,190);
+
1746 phytomer_parameters_sorghum.internode.color = make_RGBcolor(0.09,0.13,0.06);
+
1747 phytomer_parameters_sorghum.internode.length_segments = 2;
+
1748 phytomer_parameters_sorghum.internode.radial_subdivisions = 10;
+
1749 phytomer_parameters_sorghum.internode.max_floral_buds_per_petiole = 0;
+
1750 phytomer_parameters_sorghum.internode.max_vegetative_buds_per_petiole = 0;
+
1751
+
1752 phytomer_parameters_sorghum.petiole.petioles_per_internode = 1;
+
1753 phytomer_parameters_sorghum.petiole.pitch.uniformDistribution(-40,-20);
+
1754 phytomer_parameters_sorghum.petiole.radius = 0.0;
+
1755 phytomer_parameters_sorghum.petiole.length = 0.05;
+
1756 phytomer_parameters_sorghum.petiole.taper = 0;
+
1757 phytomer_parameters_sorghum.petiole.curvature = 0;
+
1758 phytomer_parameters_sorghum.petiole.length_segments = 1;
+
1759
+
1760 phytomer_parameters_sorghum.leaf.leaves_per_petiole = 1;
+
1761 phytomer_parameters_sorghum.leaf.pitch = 0;
+
1762 phytomer_parameters_sorghum.leaf.yaw = 0;
+
1763 phytomer_parameters_sorghum.leaf.roll = 0;
+
1764 phytomer_parameters_sorghum.leaf.prototype_function = SorghumLeafPrototype;
+
1765 phytomer_parameters_sorghum.leaf.prototype_scale = 0.6;
+
1766 phytomer_parameters_sorghum.leaf.subdivisions = 50;
+
1767 phytomer_parameters_sorghum.leaf.unique_prototypes = 10;
1768
-
1769 breakPlantDormancy(plantID);
-
1770
-
1771 setPlantPhenologicalThresholds(plantID, 0, -1, 10, 3, 2, 100);
-
1772
-
1773 return plantID;
-
1774
-
1775}
-
1776
-
1777void PlantArchitecture::initializeWheatShoots() {
-
1778
-
1779 // ---- Phytomer Parameters ---- //
-
1780
-
1781 PhytomerParameters phytomer_parameters_wheat(context_ptr->getRandomGenerator());
-
1782
-
1783 phytomer_parameters_wheat.internode.pitch = 0;
-
1784 phytomer_parameters_wheat.internode.phyllotactic_angle.uniformDistribution(67,77);
-
1785 phytomer_parameters_wheat.internode.color = make_RGBcolor(0.27,0.31,0.16);
-
1786 phytomer_parameters_wheat.internode.length_segments = 1;
-
1787 phytomer_parameters_wheat.internode.radial_subdivisions = 6;
-
1788 phytomer_parameters_wheat.internode.max_floral_buds_per_petiole = 0;
-
1789 phytomer_parameters_wheat.internode.max_vegetative_buds_per_petiole = 0;
-
1790
-
1791 phytomer_parameters_wheat.petiole.petioles_per_internode = 1;
-
1792 phytomer_parameters_wheat.petiole.pitch.uniformDistribution(-40,-20);
-
1793 phytomer_parameters_wheat.petiole.radius = 0.0;
-
1794 phytomer_parameters_wheat.petiole.length = 0.01;
-
1795 phytomer_parameters_wheat.petiole.taper = 0;
-
1796 phytomer_parameters_wheat.petiole.curvature = 0;
-
1797 phytomer_parameters_wheat.petiole.length_segments = 1;
-
1798
-
1799 phytomer_parameters_wheat.leaf.leaves_per_petiole = 1;
-
1800 phytomer_parameters_wheat.leaf.pitch = 0;
-
1801 phytomer_parameters_wheat.leaf.yaw = 0;
-
1802 phytomer_parameters_wheat.leaf.roll = 0;
-
1803 phytomer_parameters_wheat.leaf.prototype_function = WheatLeafPrototype;
-
1804 phytomer_parameters_wheat.leaf.prototype_scale = 0.1;
-
1805 phytomer_parameters_wheat.leaf.subdivisions = 20;
-
1806 phytomer_parameters_wheat.leaf.unique_prototypes = 10;
-
1807
-
1808 phytomer_parameters_wheat.peduncle.length = 0.07;
-
1809 phytomer_parameters_wheat.peduncle.radius = 0.002;
-
1810 phytomer_parameters_wheat.peduncle.color = phytomer_parameters_wheat.internode.color;
-
1811 phytomer_parameters_wheat.peduncle.curvature = -200;
-
1812 phytomer_parameters_wheat.peduncle.radial_subdivisions = 6;
-
1813
-
1814 phytomer_parameters_wheat.inflorescence.flowers_per_rachis = 1;
-
1815 phytomer_parameters_wheat.inflorescence.pitch = 0;
-
1816 phytomer_parameters_wheat.inflorescence.roll = 0;
-
1817 phytomer_parameters_wheat.inflorescence.fruit_prototype_scale = 0.1;
-
1818 phytomer_parameters_wheat.inflorescence.fruit_prototype_function = WheatSpikePrototype;
+
1769 phytomer_parameters_sorghum.peduncle.length = 0.3;
+
1770 phytomer_parameters_sorghum.peduncle.radius = 0.008;
+
1771 phytomer_parameters_sorghum.peduncle.color = phytomer_parameters_sorghum.internode.color;
+
1772 phytomer_parameters_sorghum.peduncle.radial_subdivisions = 10;
+
1773
+
1774 phytomer_parameters_sorghum.inflorescence.flowers_per_peduncle = 1;
+
1775 phytomer_parameters_sorghum.inflorescence.pitch = 0;
+
1776 phytomer_parameters_sorghum.inflorescence.roll = 0;
+
1777 phytomer_parameters_sorghum.inflorescence.fruit_prototype_scale = 0.16;
+
1778 phytomer_parameters_sorghum.inflorescence.fruit_prototype_function = SorghumPaniclePrototype;
+
1779
+
1780 phytomer_parameters_sorghum.phytomer_creation_function = SorghumPhytomerCreationFunction;
+
1781
+
1782 // ---- Shoot Parameters ---- //
+
1783
+
1784 ShootParameters shoot_parameters_mainstem(context_ptr->getRandomGenerator());
+
1785 shoot_parameters_mainstem.phytomer_parameters = phytomer_parameters_sorghum;
+
1786 shoot_parameters_mainstem.vegetative_bud_break_probability = 0;
+
1787 shoot_parameters_mainstem.flower_bud_break_probability = 1;
+
1788 shoot_parameters_mainstem.internode_radius_initial = 0.003;
+
1789 shoot_parameters_mainstem.phyllochron = 1;
+
1790 shoot_parameters_mainstem.elongation_rate = 0.15;
+
1791 shoot_parameters_mainstem.girth_area_factor = 5.f;
+
1792 shoot_parameters_mainstem.internode_radius_max = 0.015;
+
1793 shoot_parameters_mainstem.gravitropic_curvature.uniformDistribution(-1000,-400);
+
1794 shoot_parameters_mainstem.internode_length_max = 0.26;
+
1795 shoot_parameters_mainstem.internode_length_decay_rate = 0;
+
1796 shoot_parameters_mainstem.flowers_require_dormancy = false;
+
1797 shoot_parameters_mainstem.growth_requires_dormancy = false;
+
1798 shoot_parameters_mainstem.determinate_shoot_growth = false;
+
1799 shoot_parameters_mainstem.flower_bud_break_probability = 1.0;
+
1800 shoot_parameters_mainstem.fruit_set_probability = 1.0;
+
1801 shoot_parameters_mainstem.defineChildShootTypes({"mainstem"},{1.0});
+
1802 shoot_parameters_mainstem.max_nodes = 15;
+
1803 shoot_parameters_mainstem.max_terminal_floral_buds = 1;
+
1804
+
1805 defineShootType("mainstem",shoot_parameters_mainstem);
+
1806
+
1807}
+
1808
+
1809uint PlantArchitecture::buildSorghumPlant(const helios::vec3 &base_position) {
+
1810
+
1811 if (shoot_types.empty()) {
+
1812 //automatically initialize sorghum plant shoots
+
1813 initializeSorghumShoots();
+
1814 }
+
1815
+
1816 uint plantID = addPlantInstance(base_position - make_vec3(0,0,0.025), 0);
+
1817
+
1818 uint uID_stem = addBaseStemShoot(plantID, 1, make_AxisRotation(context_ptr->randu(0.f, 0.075f * M_PI), context_ptr->randu(0.f, 2.f * M_PI), context_ptr->randu(0.f, 2.f * M_PI)), 0.003, 0.06, 0.01, 0.01, 0, "mainstem");
1819
-
1820 phytomer_parameters_wheat.phytomer_creation_function = WheatPhytomerCreationFunction;
+
1820 breakPlantDormancy(plantID);
1821
-
1822 // ---- Shoot Parameters ---- //
+
1822 setPlantPhenologicalThresholds(plantID, 0, -1, -1, 2, 5, 100, false);
1823
-
1824 ShootParameters shoot_parameters_mainstem(context_ptr->getRandomGenerator());
-
1825 shoot_parameters_mainstem.phytomer_parameters = phytomer_parameters_wheat;
-
1826 shoot_parameters_mainstem.vegetative_bud_break_probability = 0;
-
1827 shoot_parameters_mainstem.flower_bud_break_probability = 1;
-
1828 shoot_parameters_mainstem.internode_radius_initial = 0.001;
-
1829 shoot_parameters_mainstem.phyllochron = 1;
-
1830 shoot_parameters_mainstem.elongation_rate = 0.15;
-
1831 shoot_parameters_mainstem.girth_growth_rate = 0.0015;
-
1832 shoot_parameters_mainstem.internode_radius_max = 0.0025;
-
1833 shoot_parameters_mainstem.gravitropic_curvature.uniformDistribution(-2000,-800);
-
1834 shoot_parameters_mainstem.internode_length_max = 0.025;
-
1835 shoot_parameters_mainstem.internode_length_decay_rate = 0;
-
1836 shoot_parameters_mainstem.flowers_require_dormancy = false;
-
1837 shoot_parameters_mainstem.growth_requires_dormancy = false;
-
1838 shoot_parameters_mainstem.determinate_shoot_growth = false;
-
1839 shoot_parameters_mainstem.flower_bud_break_probability = 1.0;
-
1840 shoot_parameters_mainstem.fruit_set_probability = 1.0;
-
1841 shoot_parameters_mainstem.defineChildShootTypes({"mainstem"},{1.0});
-
1842 shoot_parameters_mainstem.max_nodes = 15;
-
1843 shoot_parameters_mainstem.max_terminal_floral_buds = 1;
-
1844
-
1845 defineShootType("mainstem",shoot_parameters_mainstem);
-
1846
-
1847}
+
1824 return plantID;
+
1825
+
1826}
+
1827
+
1828void PlantArchitecture::initializeSoybeanShoots() {
+
1829
+
1830 PhytomerParameters phytomer_parameters_trifoliate(context_ptr->getRandomGenerator());
+
1831
+
1832 phytomer_parameters_trifoliate.internode.pitch = 20;
+
1833 phytomer_parameters_trifoliate.internode.phyllotactic_angle.uniformDistribution(145, 215);
+
1834 phytomer_parameters_trifoliate.internode.max_floral_buds_per_petiole = 1;
+
1835 phytomer_parameters_trifoliate.internode.max_vegetative_buds_per_petiole = 1;
+
1836 phytomer_parameters_trifoliate.internode.color = make_RGBcolor(0.2,0.25,0.05);
+
1837 phytomer_parameters_trifoliate.internode.length_segments = 5;
+
1838
+
1839 phytomer_parameters_trifoliate.petiole.petioles_per_internode = 1;
+
1840 phytomer_parameters_trifoliate.petiole.pitch.uniformDistribution(25,50);
+
1841 phytomer_parameters_trifoliate.petiole.radius = 0.003;
+
1842 phytomer_parameters_trifoliate.petiole.length.uniformDistribution(0.12,0.16);
+
1843 phytomer_parameters_trifoliate.petiole.taper = 0.25;
+
1844 phytomer_parameters_trifoliate.petiole.curvature.uniformDistribution(-250,450);
+
1845 phytomer_parameters_trifoliate.petiole.color = phytomer_parameters_trifoliate.internode.color;
+
1846 phytomer_parameters_trifoliate.petiole.length_segments = 5;
+
1847 phytomer_parameters_trifoliate.petiole.radial_subdivisions = 6;
1848
-
1849uint PlantArchitecture::buildWheatPlant(const helios::vec3 &base_position, float age) {
-
1850
-
1851 if (shoot_types.empty()) {
-
1852 //automatically initialize wheat plant shoots
-
1853 initializeWheatShoots();
-
1854 }
-
1855
-
1856 uint plantID = addPlantInstance(base_position - make_vec3(0,0,0.025), age);
-
1857
-
1858 uint uID_stem = addBaseStemShoot(plantID, 1, make_AxisRotation(context_ptr->randu(0.f, 0.1f * M_PI), context_ptr->randu(0.f, 2.f * M_PI), context_ptr->randu(0.f, 2.f * M_PI)), 0.001, 0.025, 0.01, 0.01, 0, "mainstem");
+
1849 phytomer_parameters_trifoliate.leaf.leaves_per_petiole = 3;
+
1850 phytomer_parameters_trifoliate.leaf.pitch.uniformDistribution(-10, 20);
+
1851 phytomer_parameters_trifoliate.leaf.yaw = 10;
+
1852 phytomer_parameters_trifoliate.leaf.roll = -15;
+
1853 phytomer_parameters_trifoliate.leaf.leaflet_offset = 0.5;
+
1854 phytomer_parameters_trifoliate.leaf.leaflet_scale = 0.9;
+
1855 phytomer_parameters_trifoliate.leaf.prototype_function = SoybeanLeafPrototype_trifoliate;
+
1856 phytomer_parameters_trifoliate.leaf.prototype_scale.uniformDistribution(0.12,0.16);
+
1857 phytomer_parameters_trifoliate.leaf.subdivisions = 8;
+
1858 phytomer_parameters_trifoliate.leaf.unique_prototypes = 5;
1859
-
1860 breakPlantDormancy(plantID);
-
1861
-
1862 setPlantPhenologicalThresholds(plantID, 0, -1, -1, 2, 5, 100);
-
1863
-
1864 return plantID;
-
1865
-
1866}
+
1860 phytomer_parameters_trifoliate.peduncle.length = 0.01;
+
1861 phytomer_parameters_trifoliate.peduncle.radius = 0.001;
+
1862 phytomer_parameters_trifoliate.peduncle.pitch.uniformDistribution(0, 40);
+
1863 phytomer_parameters_trifoliate.peduncle.roll = 90;
+
1864 phytomer_parameters_trifoliate.peduncle.curvature.uniformDistribution(-500, 500);
+
1865 phytomer_parameters_trifoliate.peduncle.length_segments = 1;
+
1866 phytomer_parameters_trifoliate.peduncle.radial_subdivisions = 6;
+
1867
+
1868 phytomer_parameters_trifoliate.inflorescence.flowers_per_peduncle.uniformDistribution(1, 4);
+
1869 phytomer_parameters_trifoliate.inflorescence.flower_offset = 0.2;
+
1870 phytomer_parameters_trifoliate.inflorescence.pitch.uniformDistribution(50,70);
+
1871 phytomer_parameters_trifoliate.inflorescence.roll.uniformDistribution(-20,20);
+
1872 phytomer_parameters_trifoliate.inflorescence.flower_prototype_scale = 0.015;
+
1873 phytomer_parameters_trifoliate.inflorescence.flower_prototype_function = SoybeanFlowerPrototype;
+
1874 phytomer_parameters_trifoliate.inflorescence.fruit_prototype_scale.uniformDistribution(0.08,0.1);
+
1875 phytomer_parameters_trifoliate.inflorescence.fruit_prototype_function = SoybeanFruitPrototype;
+
1876 phytomer_parameters_trifoliate.inflorescence.fruit_gravity_factor_fraction.uniformDistribution(0.8,1.0);
+
1877
+
1878 PhytomerParameters phytomer_parameters_unifoliate = phytomer_parameters_trifoliate;
+
1879 phytomer_parameters_unifoliate.internode.pitch = 0;
+
1880 phytomer_parameters_unifoliate.internode.max_vegetative_buds_per_petiole = 0;
+
1881 phytomer_parameters_unifoliate.internode.max_floral_buds_per_petiole = 0;
+
1882 phytomer_parameters_unifoliate.petiole.petioles_per_internode = 2;
+
1883 phytomer_parameters_unifoliate.petiole.length = 0.01;
+
1884 phytomer_parameters_unifoliate.petiole.radius = 0.001;
+
1885 phytomer_parameters_unifoliate.petiole.pitch.uniformDistribution(60,80);
+
1886 phytomer_parameters_unifoliate.leaf.leaves_per_petiole = 1;
+
1887 phytomer_parameters_unifoliate.leaf.prototype_scale = 0.02;
+
1888 phytomer_parameters_unifoliate.leaf.pitch.uniformDistribution(-10, 10);
+
1889 phytomer_parameters_unifoliate.leaf.prototype_function = SoybeanLeafPrototype_unifoliate;
+
1890
+
1891 // ---- Shoot Parameters ---- //
+
1892
+
1893 ShootParameters shoot_parameters_trifoliate(context_ptr->getRandomGenerator());
+
1894 shoot_parameters_trifoliate.phytomer_parameters = phytomer_parameters_trifoliate;
+
1895 shoot_parameters_trifoliate.phytomer_parameters.phytomer_creation_function = BeanPhytomerCreationFunction;
+
1896
+
1897 shoot_parameters_trifoliate.max_nodes = 20;
+
1898 shoot_parameters_trifoliate.internode_radius_initial = 0.001;
+
1899 shoot_parameters_trifoliate.internode_radius_max = 0.004;
+
1900 shoot_parameters_trifoliate.insertion_angle_tip.uniformDistribution(40,60);
+
1901// shoot_parameters_trifoliate.child_insertion_angle_decay_rate = 0; (default)
+
1902 shoot_parameters_trifoliate.internode_length_max = 0.035;
+
1903// shoot_parameters_trifoliate.child_internode_length_min = 0.0; (default)
+
1904// shoot_parameters_trifoliate.child_internode_length_decay_rate = 0; (default)
+
1905 shoot_parameters_trifoliate.base_roll = 90;
+
1906 shoot_parameters_trifoliate.base_yaw.uniformDistribution(-20,20);
+
1907 shoot_parameters_trifoliate.gravitropic_curvature = 200;
+
1908
+
1909 shoot_parameters_trifoliate.phyllochron = 1;
+
1910// shoot_parameters_trifoliate.leaf_flush_count = 1; (default)
+
1911 shoot_parameters_trifoliate.elongation_rate = 0.15;
+
1912 shoot_parameters_trifoliate.girth_area_factor = 25.f;
+
1913 shoot_parameters_trifoliate.vegetative_bud_break_time = 3;
+
1914 shoot_parameters_trifoliate.vegetative_bud_break_probability = 0.25;
+
1915// shoot_parameters_trifoliate.max_terminal_floral_buds = 0; (default)
+
1916 shoot_parameters_trifoliate.flower_bud_break_probability.uniformDistribution(0.8,1.0);
+
1917 shoot_parameters_trifoliate.fruit_set_probability = 0.4;
+
1918// shoot_parameters_trifoliate.flowers_require_dormancy = false; (default)
+
1919// shoot_parameters_trifoliate.growth_requires_dormancy = false; (default)
+
1920// shoot_parameters_trifoliate.determinate_shoot_growth = true; (default)
+
1921
+
1922 shoot_parameters_trifoliate.defineChildShootTypes({"trifoliate"},{1.0});
+
1923
+
1924
+
1925 ShootParameters shoot_parameters_unifoliate = shoot_parameters_trifoliate;
+
1926 shoot_parameters_unifoliate.phytomer_parameters = phytomer_parameters_unifoliate;
+
1927 shoot_parameters_unifoliate.max_nodes = 1;
+
1928 shoot_parameters_unifoliate.vegetative_bud_break_probability = 0;
+
1929 shoot_parameters_unifoliate.flower_bud_break_probability = 0;
+
1930 shoot_parameters_unifoliate.insertion_angle_tip = 0;
+
1931 shoot_parameters_unifoliate.insertion_angle_decay_rate = 0;
+
1932 shoot_parameters_unifoliate.vegetative_bud_break_time = 1;
+
1933 shoot_parameters_unifoliate.defineChildShootTypes({"trifoliate"},{1.0});
+
1934
+
1935 defineShootType("unifoliate",shoot_parameters_unifoliate);
+
1936 defineShootType("trifoliate",shoot_parameters_trifoliate);
+
1937
+
1938// PhytomerParameters phytomer_parameters_trifoliate(context_ptr->getRandomGenerator());
+
1939//
+
1940// phytomer_parameters_trifoliate.internode.pitch = 20;
+
1941// phytomer_parameters_trifoliate.internode.phyllotactic_angle.uniformDistribution(145, 215);
+
1942// phytomer_parameters_trifoliate.internode.max_floral_buds_per_petiole = 1;
+
1943// phytomer_parameters_trifoliate.internode.max_vegetative_buds_per_petiole = 1;
+
1944// phytomer_parameters_trifoliate.internode.color = make_RGBcolor(0.2,0.25,0.05);
+
1945// phytomer_parameters_trifoliate.internode.length_segments = 5;
+
1946//
+
1947// phytomer_parameters_trifoliate.petiole.petioles_per_internode = 1;
+
1948// phytomer_parameters_trifoliate.petiole.pitch.uniformDistribution(30,70);
+
1949// phytomer_parameters_trifoliate.petiole.radius = 0.003;
+
1950// phytomer_parameters_trifoliate.petiole.length.uniformDistribution(0.12,0.16);
+
1951// phytomer_parameters_trifoliate.petiole.taper = 0.25;
+
1952// phytomer_parameters_trifoliate.petiole.curvature.uniformDistribution(-100,200);
+
1953// phytomer_parameters_trifoliate.petiole.color = make_RGBcolor(0.28,0.35,0.07);
+
1954// phytomer_parameters_trifoliate.petiole.length_segments = 5;
+
1955// phytomer_parameters_trifoliate.petiole.radial_subdivisions = 6;
+
1956//
+
1957// phytomer_parameters_trifoliate.leaf.leaves_per_petiole = 3;
+
1958// phytomer_parameters_trifoliate.leaf.pitch.normalDistribution(0, 10);
+
1959// phytomer_parameters_trifoliate.leaf.yaw = 10;
+
1960// phytomer_parameters_trifoliate.leaf.roll = -15;
+
1961// phytomer_parameters_trifoliate.leaf.leaflet_offset = 0.2;
+
1962// phytomer_parameters_trifoliate.leaf.leaflet_scale = 0.9;
+
1963// phytomer_parameters_trifoliate.leaf.prototype_function = SoybeanLeafPrototype_trifoliate;
+
1964// phytomer_parameters_trifoliate.leaf.prototype_scale.uniformDistribution(0.11,0.13);
+
1965// phytomer_parameters_trifoliate.leaf.subdivisions = 10;
+
1966// phytomer_parameters_trifoliate.leaf.unique_prototypes = 5;
+
1967//
+
1968// phytomer_parameters_trifoliate.peduncle.length = 0.04;
+
1969// phytomer_parameters_trifoliate.peduncle.radius = 0.001;
+
1970// phytomer_parameters_trifoliate.peduncle.pitch.uniformDistribution(0, 40);
+
1971// phytomer_parameters_trifoliate.peduncle.roll = 90;
+
1972// phytomer_parameters_trifoliate.peduncle.curvature.uniformDistribution(-500, 500);
+
1973// phytomer_parameters_trifoliate.peduncle.length_segments = 1;
+
1974// phytomer_parameters_trifoliate.peduncle.radial_subdivisions = 6;
+
1975//
+
1976// phytomer_parameters_trifoliate.inflorescence.flowers_per_rachis.uniformDistribution(1, 4);
+
1977// phytomer_parameters_trifoliate.inflorescence.flower_offset = 0.2;
+
1978// phytomer_parameters_trifoliate.inflorescence.flower_arrangement_pattern = "opposite";
+
1979// phytomer_parameters_trifoliate.inflorescence.pitch.uniformDistribution(50,70);
+
1980// phytomer_parameters_trifoliate.inflorescence.roll.uniformDistribution(-20,20);
+
1981// phytomer_parameters_trifoliate.inflorescence.flower_prototype_scale = 0.015;
+
1982// phytomer_parameters_trifoliate.inflorescence.flower_prototype_function = BeanFlowerPrototype;
+
1983// phytomer_parameters_trifoliate.inflorescence.fruit_prototype_scale.uniformDistribution(0.08,0.1);
+
1984// phytomer_parameters_trifoliate.inflorescence.fruit_prototype_function = BeanFruitPrototype;
+
1985// phytomer_parameters_trifoliate.inflorescence.fruit_gravity_factor_fraction.uniformDistribution(0.8,1.0);
+
1986//
+
1987// PhytomerParameters phytomer_parameters_unifoliate = phytomer_parameters_trifoliate;
+
1988// phytomer_parameters_unifoliate.internode.pitch = 0;
+
1989// phytomer_parameters_unifoliate.internode.max_vegetative_buds_per_petiole = 0;
+
1990// phytomer_parameters_unifoliate.internode.max_floral_buds_per_petiole = 0;
+
1991// phytomer_parameters_unifoliate.petiole.petioles_per_internode = 2;
+
1992// phytomer_parameters_unifoliate.petiole.length = 0.001;
+
1993// phytomer_parameters_unifoliate.petiole.radius = 0.0004;
+
1994// phytomer_parameters_unifoliate.petiole.pitch.uniformDistribution(60,80);
+
1995// phytomer_parameters_unifoliate.leaf.leaves_per_petiole = 1;
+
1996// phytomer_parameters_unifoliate.leaf.prototype_scale = 0.02;
+
1997// phytomer_parameters_unifoliate.leaf.pitch.uniformDistribution(-10, 10);
+
1998// phytomer_parameters_unifoliate.leaf.prototype_function = BeanLeafPrototype_unifoliate;
+
1999//
+
2000// // ---- Shoot Parameters ---- //
+
2001//
+
2002// ShootParameters shoot_parameters_trifoliate(context_ptr->getRandomGenerator());
+
2003// shoot_parameters_trifoliate.phytomer_parameters = phytomer_parameters_trifoliate;
+
2004// shoot_parameters_trifoliate.phytomer_parameters.phytomer_creation_function = BeanPhytomerCreationFunction;
+
2005//
+
2006// shoot_parameters_trifoliate.max_nodes = 25;
+
2007// shoot_parameters_trifoliate.internode_radius_initial = 0.0005;
+
2008// shoot_parameters_trifoliate.internode_radius_max = 0.003;
+
2009// shoot_parameters_trifoliate.insertion_angle_tip.uniformDistribution(40,60);
+
2011// shoot_parameters_trifoliate.internode_length_max = 0.03;
+
2014// shoot_parameters_trifoliate.base_roll = 90;
+
2015// shoot_parameters_trifoliate.base_yaw.uniformDistribution(-20,20);
+
2016// shoot_parameters_trifoliate.gravitropic_curvature = 300;
+
2017//
+
2018// shoot_parameters_trifoliate.phyllochron = 1;
+
2020// shoot_parameters_trifoliate.elongation_rate = 0.1;
+
2021// shoot_parameters_trifoliate.girth_growth_rate = 0.00025;
+
2022// shoot_parameters_trifoliate.vegetative_bud_break_time = 3;
+
2023// shoot_parameters_trifoliate.vegetative_bud_break_probability = 0.25;
+
2025// shoot_parameters_trifoliate.flower_bud_break_probability.uniformDistribution(0.8,1.0);
+
2026// shoot_parameters_trifoliate.fruit_set_probability = 0.4;
+
2030//
+
2031// shoot_parameters_trifoliate.defineChildShootTypes({"trifoliate"},{1.0});
+
2032//
+
2033//
+
2034// ShootParameters shoot_parameters_unifoliate = shoot_parameters_trifoliate;
+
2035// shoot_parameters_unifoliate.phytomer_parameters = phytomer_parameters_unifoliate;
+
2036// shoot_parameters_unifoliate.max_nodes = 1;
+
2037// shoot_parameters_unifoliate.vegetative_bud_break_probability = 0;
+
2038// shoot_parameters_unifoliate.flower_bud_break_probability = 0;
+
2039// shoot_parameters_unifoliate.insertion_angle_tip = 0;
+
2040// shoot_parameters_unifoliate.insertion_angle_decay_rate = 0;
+
2041// shoot_parameters_unifoliate.vegetative_bud_break_time = 1;
+
2042// shoot_parameters_unifoliate.defineChildShootTypes({"trifoliate"},{1.0});
+
2043//
+
2044// defineShootType("unifoliate",shoot_parameters_unifoliate);
+
2045// defineShootType("trifoliate",shoot_parameters_trifoliate);
+
2046
+
2047
+
2048}
+
2049
+
2050uint PlantArchitecture::buildSoybeanPlant(const helios::vec3 &base_position) {
+
2051
+
2052 if (shoot_types.empty()) {
+
2053 //automatically initialize bean plant shoots
+
2054 initializeSoybeanShoots();
+
2055 }
+
2056
+
2057 uint plantID = addPlantInstance(base_position, 0);
+
2058
+
2059 AxisRotation base_rotation = make_AxisRotation(context_ptr->randu(0.f, 0.05f * M_PI), context_ptr->randu(0.f, 2.f * M_PI), context_ptr->randu(0.f, 2.f * M_PI));
+
2060 uint uID_unifoliate = addBaseStemShoot(plantID, 1, base_rotation, 0.0005, 0.01, 0.01, 0.01, 0, "unifoliate");
+
2061
+
2062 appendShoot(plantID, uID_unifoliate, 1, make_AxisRotation(0, 0, 0.5f * M_PI), shoot_types.at("trifoliate").internode_radius_initial.val(), shoot_types.at("trifoliate").internode_length_max.val(), 0.1, 0.1, 0, "trifoliate");
+
2063
+
2064 breakPlantDormancy(plantID);
+
2065
+
2066 setPlantPhenologicalThresholds(plantID, 0, 15, 3, 3, 5, 100, false);
+
2067
+
2068 return plantID;
+
2069
+
2070}
+
2071
+
2072void PlantArchitecture::initializeStrawberryShoots() {
+
2073
+
2074 // ---- Phytomer Parameters ---- //
+
2075
+
2076 PhytomerParameters phytomer_parameters(context_ptr->getRandomGenerator());
+
2077
+
2078 phytomer_parameters.internode.pitch = 10;
+
2079 phytomer_parameters.internode.phyllotactic_angle.uniformDistribution(80,100);
+
2080 phytomer_parameters.internode.color = make_RGBcolor(0.38, 0.48, 0.1);
+
2081 phytomer_parameters.internode.length_segments = 1;
+
2082
+
2083 phytomer_parameters.petiole.petioles_per_internode = 1;
+
2084 phytomer_parameters.petiole.pitch.uniformDistribution(10,45);
+
2085 phytomer_parameters.petiole.radius = 0.003;
+
2086 phytomer_parameters.petiole.length = 0.2;
+
2087 phytomer_parameters.petiole.taper = 0.5;
+
2088 phytomer_parameters.petiole.curvature.uniformDistribution(-200,100);
+
2089 phytomer_parameters.petiole.color = make_RGBcolor(0.24, 0.28, 0.08);
+
2090 phytomer_parameters.petiole.length_segments = 5;
+
2091
+
2092 phytomer_parameters.leaf.leaves_per_petiole = 3;
+
2093 phytomer_parameters.leaf.pitch.uniformDistribution(-30,-15);
+
2094 phytomer_parameters.leaf.yaw = 20;
+
2095 phytomer_parameters.leaf.roll = -30;
+
2096 phytomer_parameters.leaf.leaflet_offset = 0.01;
+
2097 phytomer_parameters.leaf.leaflet_scale = 1.0;
+
2098 phytomer_parameters.leaf.prototype_function = StrawberryLeafPrototype;
+
2099 phytomer_parameters.leaf.prototype_scale = 0.1;
+
2100 phytomer_parameters.leaf.subdivisions = 6;
+
2101 phytomer_parameters.leaf.unique_prototypes = 5;
+
2102
+
2103 phytomer_parameters.peduncle.length = 0.17;
+
2104 phytomer_parameters.peduncle.radius = 0.00075;
+
2105 phytomer_parameters.peduncle.pitch = 35;
+
2106 phytomer_parameters.peduncle.roll = 0;
+
2107 phytomer_parameters.peduncle.curvature = -200;
+
2108 phytomer_parameters.peduncle.length_segments = 5;
+
2109 phytomer_parameters.peduncle.radial_subdivisions = 6;
+
2110 phytomer_parameters.peduncle.color = phytomer_parameters.petiole.color;
+
2111
+
2112 phytomer_parameters.inflorescence.flowers_per_peduncle.uniformDistribution(1, 3);
+
2113 phytomer_parameters.inflorescence.flower_offset = 0.2;
+
2114 phytomer_parameters.inflorescence.pitch = 70;
+
2115 phytomer_parameters.inflorescence.roll = 90;
+
2116 phytomer_parameters.inflorescence.flower_prototype_scale = 0.04;
+
2117 phytomer_parameters.inflorescence.flower_prototype_function = StrawberryFlowerPrototype;
+
2118 phytomer_parameters.inflorescence.fruit_prototype_scale = 0.06;
+
2119 phytomer_parameters.inflorescence.fruit_prototype_function = StrawberryFruitPrototype;
+
2120 phytomer_parameters.inflorescence.fruit_gravity_factor_fraction = 0.65;
+
2121
+
2122 // ---- Shoot Parameters ---- //
+
2123
+
2124 ShootParameters shoot_parameters(context_ptr->getRandomGenerator());
+
2125 shoot_parameters.phytomer_parameters = phytomer_parameters;
+
2126
+
2127 shoot_parameters.max_nodes = 15;
+
2128 shoot_parameters.internode_radius_initial = 0.001;
+
2129 shoot_parameters.internode_radius_max = 0.005;
+
2130 shoot_parameters.insertion_angle_tip = 40;
+
2131 shoot_parameters.insertion_angle_decay_rate = 0;
+
2132 shoot_parameters.internode_length_max = 0.01;
+
2133 shoot_parameters.internode_length_decay_rate = 0;
+
2134 shoot_parameters.internode_length_min = 0.0;
+
2135 shoot_parameters.base_roll = 90;
+
2136 shoot_parameters.base_yaw.uniformDistribution(-20,20);
+
2137 shoot_parameters.gravitropic_curvature.uniformDistribution(-10,0);
+
2138 shoot_parameters.tortuosity = 0;
+
2139
+
2140 shoot_parameters.phyllochron = 1.;
+
2141 shoot_parameters.leaf_flush_count = 1;
+
2142 shoot_parameters.elongation_rate = 0.1;
+
2143 shoot_parameters.girth_area_factor = 10.f;
+
2144 shoot_parameters.vegetative_bud_break_time = 3;
+
2145 shoot_parameters.vegetative_bud_break_probability = 0.25;
+
2146 shoot_parameters.flower_bud_break_probability = 1;
+
2147 shoot_parameters.fruit_set_probability = 0.5;
+
2148 shoot_parameters.flowers_require_dormancy = false;
+
2149 shoot_parameters.growth_requires_dormancy = false;
+
2150 shoot_parameters.determinate_shoot_growth = true;
+
2151
+
2152 shoot_parameters.defineChildShootTypes({"mainstem"},{1.0});
+
2153
+
2154 defineShootType("mainstem",shoot_parameters);
+
2155
+
2156}
+
2157
+
2158uint PlantArchitecture::buildStrawberryPlant(const helios::vec3 &base_position) {
+
2159
+
2160 if (shoot_types.empty()) {
+
2161 //automatically initialize strawberry plant shoots
+
2162 initializeStrawberryShoots();
+
2163 }
+
2164
+
2165 uint plantID = addPlantInstance(base_position, 0);
+
2166
+
2167 AxisRotation base_rotation = make_AxisRotation(0, context_ptr->randu(0.f, 2.f * M_PI), context_ptr->randu(0.f, 2.f * M_PI));
+
2168 uint uID_stem = addBaseStemShoot(plantID, 1, base_rotation, 0.001, 0.004, 0.01, 0.01, 0, "mainstem");
+
2169
+
2170 breakPlantDormancy(plantID);
+
2171
+
2172 setPlantPhenologicalThresholds(plantID, 0, -1, 10, 3, 1, 100, false);
+
2173
+
2174 return plantID;
+
2175
+
2176}
+
2177
+
2178void PlantArchitecture::initializeSugarbeetShoots() {
+
2179
+
2180 // ---- Phytomer Parameters ---- //
+
2181
+
2182 PhytomerParameters phytomer_parameters_sugarbeet(context_ptr->getRandomGenerator());
+
2183
+
2184 phytomer_parameters_sugarbeet.internode.pitch = 0;
+
2185 phytomer_parameters_sugarbeet.internode.phyllotactic_angle = 137.5;
+
2186 phytomer_parameters_sugarbeet.internode.color = make_RGBcolor(0.44,0.58,0.19);
+
2187 phytomer_parameters_sugarbeet.internode.length_segments = 2;
+
2188
+
2189 phytomer_parameters_sugarbeet.petiole.petioles_per_internode = 1;
+
2190 phytomer_parameters_sugarbeet.petiole.pitch.uniformDistribution(0,40);
+
2191 phytomer_parameters_sugarbeet.petiole.radius = 0.005;
+
2192 phytomer_parameters_sugarbeet.petiole.length.uniformDistribution(0.15,0.2);
+
2193 phytomer_parameters_sugarbeet.petiole.taper = 0.6;
+
2194 phytomer_parameters_sugarbeet.petiole.curvature.uniformDistribution(-300,100);
+
2195 phytomer_parameters_sugarbeet.petiole.color = phytomer_parameters_sugarbeet.internode.color;
+
2196 phytomer_parameters_sugarbeet.petiole.length_segments = 8;
+
2197
+
2198 phytomer_parameters_sugarbeet.leaf.leaves_per_petiole = 1;
+
2199 phytomer_parameters_sugarbeet.leaf.pitch.uniformDistribution(-10,0);
+
2200 phytomer_parameters_sugarbeet.leaf.yaw.uniformDistribution(-5,5);
+
2201 phytomer_parameters_sugarbeet.leaf.roll.uniformDistribution(-15,15);
+
2202 phytomer_parameters_sugarbeet.leaf.prototype_function = SugarbeetLeafPrototype;
+
2203 phytomer_parameters_sugarbeet.leaf.prototype_scale.uniformDistribution(0.15,0.25);
+
2204 phytomer_parameters_sugarbeet.leaf.subdivisions = 40;
+
2205
+
2206 // ---- Shoot Parameters ---- //
+
2207
+
2208 ShootParameters shoot_parameters_mainstem(context_ptr->getRandomGenerator());
+
2209 shoot_parameters_mainstem.phytomer_parameters = phytomer_parameters_sugarbeet;
+
2210 shoot_parameters_mainstem.vegetative_bud_break_probability = 0;
+
2211 shoot_parameters_mainstem.internode_radius_initial = 0.005;
+
2212 shoot_parameters_mainstem.phyllochron = 1;
+
2213 shoot_parameters_mainstem.elongation_rate = 0.25;
+
2214 shoot_parameters_mainstem.girth_area_factor = 20.f;
+
2215 shoot_parameters_mainstem.gravitropic_curvature = 10;
+
2216 shoot_parameters_mainstem.internode_length_max = 0.001;
+
2217 shoot_parameters_mainstem.internode_length_decay_rate = 0;
+
2218 shoot_parameters_mainstem.flowers_require_dormancy = false;
+
2219 shoot_parameters_mainstem.growth_requires_dormancy = false;
+
2220 shoot_parameters_mainstem.flower_bud_break_probability = 0.0;
+
2221 shoot_parameters_mainstem.max_nodes = 30;
+
2222
+
2223 defineShootType("mainstem",shoot_parameters_mainstem);
+
2224
+
2225
+
2226}
+
2227
+
2228uint PlantArchitecture::buildSugarbeetPlant(const helios::vec3 &base_position) {
+
2229
+
2230 if (shoot_types.empty()) {
+
2231 //automatically initialize sugarbeet plant shoots
+
2232 initializeSugarbeetShoots();
+
2233 }
+
2234
+
2235 uint plantID = addPlantInstance(base_position, 0);
+
2236
+
2237 uint uID_stem = addBaseStemShoot(plantID, 3, make_AxisRotation(context_ptr->randu(0.f, 0.01f * M_PI), 0.f * context_ptr->randu(0.f, 2.f * M_PI), 0.25f * M_PI), 0.005, 0.001, 1, 1, 0, "mainstem");
+
2238
+
2239 breakPlantDormancy(plantID);
+
2240
+
2241 setPlantPhenologicalThresholds(plantID, 0, 1000, 10, 60, 5, 100, false);
+
2242
+
2243 return plantID;
+
2244
+
2245}
+
2246
+
2247void PlantArchitecture::initializeTomatoShoots() {
+
2248
+
2249 // ---- Phytomer Parameters ---- //
+
2250
+
2251 PhytomerParameters phytomer_parameters(context_ptr->getRandomGenerator());
+
2252
+
2253 phytomer_parameters.internode.pitch = 10;
+
2254 phytomer_parameters.internode.phyllotactic_angle.uniformDistribution(145, 215);
+
2255 phytomer_parameters.internode.color = make_RGBcolor(0.213, 0.270, 0.056);
+
2256 phytomer_parameters.internode.length_segments = 1;
+
2257
+
2258 phytomer_parameters.petiole.petioles_per_internode = 1;
+
2259 phytomer_parameters.petiole.pitch.uniformDistribution(45,60);
+
2260 phytomer_parameters.petiole.radius = 0.002;
+
2261 phytomer_parameters.petiole.length = 0.2;
+
2262 phytomer_parameters.petiole.taper = 0.15;
+
2263 phytomer_parameters.petiole.curvature.uniformDistribution(-150,-50);
+
2264 phytomer_parameters.petiole.color = phytomer_parameters.internode.color;
+
2265 phytomer_parameters.petiole.length_segments = 5;
+
2266
+
2267 phytomer_parameters.leaf.leaves_per_petiole = 7;
+
2268 phytomer_parameters.leaf.pitch.uniformDistribution(-30, 5);
+
2269 phytomer_parameters.leaf.yaw = 10;
+
2270 phytomer_parameters.leaf.roll = 0;
+
2271 phytomer_parameters.leaf.leaflet_offset = 0.15;
+
2272 phytomer_parameters.leaf.leaflet_scale = 0.7;
+
2273 phytomer_parameters.leaf.prototype_function = TomatoLeafPrototype;
+
2274 phytomer_parameters.leaf.prototype_scale.uniformDistribution(0.1,0.14);
+
2275 phytomer_parameters.leaf.subdivisions = 6;
+
2276 phytomer_parameters.leaf.unique_prototypes = 5;
+
2277
+
2278 phytomer_parameters.peduncle.length = 0.16;
+
2279 phytomer_parameters.peduncle.radius = 0.0015;
+
2280 phytomer_parameters.peduncle.pitch = 20;
+
2281 phytomer_parameters.peduncle.roll = 0;
+
2282 phytomer_parameters.peduncle.curvature = -700;
+
2283 phytomer_parameters.peduncle.color = phytomer_parameters.internode.color;
+
2284 phytomer_parameters.peduncle.length_segments = 5;
+
2285 phytomer_parameters.peduncle.radial_subdivisions = 8;
+
2286
+
2287 phytomer_parameters.inflorescence.flowers_per_peduncle = 8;
+
2288 phytomer_parameters.inflorescence.flower_offset = 0.15;
+
2289 phytomer_parameters.inflorescence.pitch = 90;
+
2290 phytomer_parameters.inflorescence.roll.uniformDistribution(-30,30);
+
2291 phytomer_parameters.inflorescence.flower_prototype_scale = 0.03;
+
2292 phytomer_parameters.inflorescence.flower_prototype_function = TomatoFlowerPrototype;
+
2293 phytomer_parameters.inflorescence.fruit_prototype_scale = 0.04;
+
2294 phytomer_parameters.inflorescence.fruit_prototype_function = TomatoFruitPrototype;
+
2295 phytomer_parameters.inflorescence.fruit_gravity_factor_fraction = 0.5;
+
2296
+
2297 // ---- Shoot Parameters ---- //
+
2298
+
2299 ShootParameters shoot_parameters(context_ptr->getRandomGenerator());
+
2300 shoot_parameters.phytomer_parameters = phytomer_parameters;
+
2301 shoot_parameters.phytomer_parameters.phytomer_creation_function = TomatoPhytomerCreationFunction;
+
2302
+
2303 shoot_parameters.max_nodes = 20;
+
2304 shoot_parameters.internode_radius_initial = 0.001;
+
2305 shoot_parameters.internode_radius_max = 0.009;
+
2306 shoot_parameters.insertion_angle_tip = 30;
+
2307 shoot_parameters.insertion_angle_decay_rate = 0;
+
2308 shoot_parameters.internode_length_max = 0.04;
+
2309 shoot_parameters.internode_length_min = 0.0;
+
2310 shoot_parameters.internode_length_decay_rate = 0;
+
2311 shoot_parameters.base_roll = 90;
+
2312 shoot_parameters.base_yaw.uniformDistribution(-20,20);
+
2313 shoot_parameters.gravitropic_curvature = -20;
+
2314 shoot_parameters.tortuosity = 0;
+
2315
+
2316 shoot_parameters.phyllochron = 1;
+
2317 shoot_parameters.leaf_flush_count = 1;
+
2318 shoot_parameters.elongation_rate = 0.1;
+
2319 shoot_parameters.girth_area_factor = 3.f;
+
2320 shoot_parameters.vegetative_bud_break_time = 3;
+
2321 shoot_parameters.vegetative_bud_break_probability = 0.6;
+
2322 shoot_parameters.flower_bud_break_probability = 0.5;
+
2323 shoot_parameters.fruit_set_probability = 0.5;
+
2324 shoot_parameters.flowers_require_dormancy = false;
+
2325 shoot_parameters.growth_requires_dormancy = false;
+
2326 shoot_parameters.determinate_shoot_growth = true;
+
2327
+
2328 shoot_parameters.defineChildShootTypes({"mainstem"},{1.0});
+
2329
+
2330 defineShootType("mainstem",shoot_parameters);
+
2331
+
2332}
+
2333
+
2334uint PlantArchitecture::buildTomatoPlant(const helios::vec3 &base_position) {
+
2335
+
2336 if (shoot_types.empty()) {
+
2337 //automatically initialize tomato plant shoots
+
2338 initializeTomatoShoots();
+
2339 }
+
2340
+
2341 uint plantID = addPlantInstance(base_position, 0);
+
2342
+
2343 AxisRotation base_rotation = make_AxisRotation(0, context_ptr->randu(0.f, 2.f * M_PI), context_ptr->randu(0.f, 2.f * M_PI));
+
2344 uint uID_stem = addBaseStemShoot(plantID, 1, base_rotation, 0.002, 0.04, 0.01, 0.01, 0, "mainstem");
+
2345
+
2346 breakPlantDormancy(plantID);
+
2347
+
2348 setPlantPhenologicalThresholds(plantID, 0, -1, 10, 3, 2, 100, false);
+
2349
+
2350 return plantID;
+
2351
+
2352}
+
2353
+
2354void PlantArchitecture::initializeWheatShoots() {
+
2355
+
2356 // ---- Phytomer Parameters ---- //
+
2357
+
2358 PhytomerParameters phytomer_parameters_wheat(context_ptr->getRandomGenerator());
+
2359
+
2360 phytomer_parameters_wheat.internode.pitch = 0;
+
2361 phytomer_parameters_wheat.internode.phyllotactic_angle.uniformDistribution(67,77);
+
2362 phytomer_parameters_wheat.internode.color = make_RGBcolor(0.27,0.31,0.16);
+
2363 phytomer_parameters_wheat.internode.length_segments = 1;
+
2364 phytomer_parameters_wheat.internode.radial_subdivisions = 6;
+
2365 phytomer_parameters_wheat.internode.max_floral_buds_per_petiole = 0;
+
2366 phytomer_parameters_wheat.internode.max_vegetative_buds_per_petiole = 0;
+
2367
+
2368 phytomer_parameters_wheat.petiole.petioles_per_internode = 1;
+
2369 phytomer_parameters_wheat.petiole.pitch.uniformDistribution(-40,-20);
+
2370 phytomer_parameters_wheat.petiole.radius = 0.0;
+
2371 phytomer_parameters_wheat.petiole.length = 0.01;
+
2372 phytomer_parameters_wheat.petiole.taper = 0;
+
2373 phytomer_parameters_wheat.petiole.curvature = 0;
+
2374 phytomer_parameters_wheat.petiole.length_segments = 1;
+
2375
+
2376 phytomer_parameters_wheat.leaf.leaves_per_petiole = 1;
+
2377 phytomer_parameters_wheat.leaf.pitch = 0;
+
2378 phytomer_parameters_wheat.leaf.yaw = 0;
+
2379 phytomer_parameters_wheat.leaf.roll = 0;
+
2380 phytomer_parameters_wheat.leaf.prototype_function = WheatLeafPrototype;
+
2381 phytomer_parameters_wheat.leaf.prototype_scale = 0.1;
+
2382 phytomer_parameters_wheat.leaf.subdivisions = 20;
+
2383 phytomer_parameters_wheat.leaf.unique_prototypes = 10;
+
2384
+
2385 phytomer_parameters_wheat.peduncle.length = 0.07;
+
2386 phytomer_parameters_wheat.peduncle.radius = 0.002;
+
2387 phytomer_parameters_wheat.peduncle.color = phytomer_parameters_wheat.internode.color;
+
2388 phytomer_parameters_wheat.peduncle.curvature = -200;
+
2389 phytomer_parameters_wheat.peduncle.radial_subdivisions = 6;
+
2390
+
2391 phytomer_parameters_wheat.inflorescence.flowers_per_peduncle = 1;
+
2392 phytomer_parameters_wheat.inflorescence.pitch = 0;
+
2393 phytomer_parameters_wheat.inflorescence.roll = 0;
+
2394 phytomer_parameters_wheat.inflorescence.fruit_prototype_scale = 0.1;
+
2395 phytomer_parameters_wheat.inflorescence.fruit_prototype_function = WheatSpikePrototype;
+
2396
+
2397 phytomer_parameters_wheat.phytomer_creation_function = WheatPhytomerCreationFunction;
+
2398
+
2399 // ---- Shoot Parameters ---- //
+
2400
+
2401 ShootParameters shoot_parameters_mainstem(context_ptr->getRandomGenerator());
+
2402 shoot_parameters_mainstem.phytomer_parameters = phytomer_parameters_wheat;
+
2403 shoot_parameters_mainstem.vegetative_bud_break_probability = 0;
+
2404 shoot_parameters_mainstem.flower_bud_break_probability = 1;
+
2405 shoot_parameters_mainstem.internode_radius_initial = 0.001;
+
2406 shoot_parameters_mainstem.phyllochron = 1;
+
2407 shoot_parameters_mainstem.elongation_rate = 0.15;
+
2408 shoot_parameters_mainstem.girth_area_factor = 7.f;
+
2409 shoot_parameters_mainstem.internode_radius_max = 0.0025;
+
2410 shoot_parameters_mainstem.gravitropic_curvature.uniformDistribution(-2000,-800);
+
2411 shoot_parameters_mainstem.internode_length_max = 0.025;
+
2412 shoot_parameters_mainstem.internode_length_decay_rate = 0;
+
2413 shoot_parameters_mainstem.flowers_require_dormancy = false;
+
2414 shoot_parameters_mainstem.growth_requires_dormancy = false;
+
2415 shoot_parameters_mainstem.determinate_shoot_growth = false;
+
2416 shoot_parameters_mainstem.flower_bud_break_probability = 1.0;
+
2417 shoot_parameters_mainstem.fruit_set_probability = 1.0;
+
2418 shoot_parameters_mainstem.defineChildShootTypes({"mainstem"},{1.0});
+
2419 shoot_parameters_mainstem.max_nodes = 15;
+
2420 shoot_parameters_mainstem.max_terminal_floral_buds = 1;
+
2421
+
2422 defineShootType("mainstem",shoot_parameters_mainstem);
+
2423
+
2424}
+
2425
+
2426uint PlantArchitecture::buildWheatPlant(const helios::vec3 &base_position) {
+
2427
+
2428 if (shoot_types.empty()) {
+
2429 //automatically initialize wheat plant shoots
+
2430 initializeWheatShoots();
+
2431 }
+
2432
+
2433 uint plantID = addPlantInstance(base_position - make_vec3(0,0,0.025), 0);
+
2434
+
2435 uint uID_stem = addBaseStemShoot(plantID, 1, make_AxisRotation(context_ptr->randu(0.f, 0.1f * M_PI), context_ptr->randu(0.f, 2.f * M_PI), context_ptr->randu(0.f, 2.f * M_PI)), 0.001, 0.025, 0.01, 0.01, 0, "mainstem");
+
2436
+
2437 breakPlantDormancy(plantID);
+
2438
+
2439 setPlantPhenologicalThresholds(plantID, 0, -1, -1, 2, 5, 100, false);
+
2440
+
2441 return plantID;
+
2442
+
2443}
-
PlantArchitecture::addPlantInstance
uint addPlantInstance(const helios::vec3 &base_position, float current_age)
Create an instance of a plant.
Definition PlantArchitecture.cpp:2558
-
PlantArchitecture::addChildShoot
uint addChildShoot(uint plantID, int parent_shoot_ID, uint parent_node_index, uint current_node_number, const AxisRotation &shoot_base_rotation, float internode_radius, float internode_length_max, float internode_length_scale_factor_fraction, float leaf_scale_factor_fraction, float radius_taper, const std::string &shoot_type_label, uint petiole_index=0)
Manually add a child shoot at the axillary bud of a phytomer.
Definition PlantArchitecture.cpp:1943
-
PlantArchitecture::appendPhytomerToShoot
int appendPhytomerToShoot(uint plantID, uint shootID, const PhytomerParameters &phytomer_parameters, float internode_radius, float internode_length_max, float internode_length_scale_factor_fraction, float leaf_scale_factor_fraction)
Add a new phytomer at the terminal bud of a shoot.
Definition PlantArchitecture.cpp:2025
-
PlantArchitecture::getCurrentShootParameters
std::map< std::string, ShootParameters > getCurrentShootParameters()
Get the shoot parameters structure for all shoot types in the current plant model.
Definition PlantLibrary.cpp:85
-
PlantArchitecture::updateCurrentShootParameters
void updateCurrentShootParameters(const std::string &shoot_type_label, const ShootParameters &params)
Update the parameters of a single shoot type in the current plant model.
Definition PlantLibrary.cpp:92
-
PlantArchitecture::appendShoot
uint appendShoot(uint plantID, int parent_shoot_ID, uint current_node_number, const AxisRotation &base_rotation, float internode_radius, float internode_length_max, float internode_length_scale_factor_fraction, float leaf_scale_factor_fraction, float radius_taper, const std::string &shoot_type_label)
Manually append a new shoot at the end of an existing shoot. This is used when the characteristics of...
Definition PlantArchitecture.cpp:1898
-
PlantArchitecture::addBaseStemShoot
uint addBaseStemShoot(uint plantID, uint current_node_number, const AxisRotation &base_rotation, float internode_radius, float internode_length_max, float internode_length_scale_factor_fraction, float leaf_scale_factor_fraction, float radius_taper, const std::string &shoot_type_label)
Define the stem/trunk shoot (base of plant) to start a new plant. This requires a plant instance has ...
Definition PlantArchitecture.cpp:1866
-
PlantArchitecture::defineShootType
void defineShootType(const std::string &shoot_type_label, const ShootParameters &shoot_params)
Define a new shoot type based on a set of ShootParameters.
Definition PlantArchitecture.cpp:236
+
PlantArchitecture::addPlantInstance
uint addPlantInstance(const helios::vec3 &base_position, float current_age)
Create an instance of a plant.
Definition PlantArchitecture.cpp:2568
+
PlantArchitecture::addChildShoot
uint addChildShoot(uint plantID, int parent_shoot_ID, uint parent_node_index, uint current_node_number, const AxisRotation &shoot_base_rotation, float internode_radius, float internode_length_max, float internode_length_scale_factor_fraction, float leaf_scale_factor_fraction, float radius_taper, const std::string &shoot_type_label, uint petiole_index=0)
Manually add a child shoot at the axillary bud of a phytomer.
Definition PlantArchitecture.cpp:1976
+
PlantArchitecture::appendPhytomerToShoot
int appendPhytomerToShoot(uint plantID, uint shootID, const PhytomerParameters &phytomer_parameters, float internode_radius, float internode_length_max, float internode_length_scale_factor_fraction, float leaf_scale_factor_fraction)
Add a new phytomer at the terminal bud of a shoot.
Definition PlantArchitecture.cpp:2058
+
PlantArchitecture::getCurrentShootParameters
std::map< std::string, ShootParameters > getCurrentShootParameters()
Get the shoot parameters structure for all shoot types in the current plant model.
Definition PlantLibrary.cpp:93
+
PlantArchitecture::updateCurrentShootParameters
void updateCurrentShootParameters(const std::string &shoot_type_label, const ShootParameters &params)
Update the parameters of a single shoot type in the current plant model.
Definition PlantLibrary.cpp:100
+
PlantArchitecture::appendShoot
uint appendShoot(uint plantID, int parent_shoot_ID, uint current_node_number, const AxisRotation &base_rotation, float internode_radius, float internode_length_max, float internode_length_scale_factor_fraction, float leaf_scale_factor_fraction, float radius_taper, const std::string &shoot_type_label)
Manually append a new shoot at the end of an existing shoot. This is used when the characteristics of...
Definition PlantArchitecture.cpp:1931
+
PlantArchitecture::addBaseStemShoot
uint addBaseStemShoot(uint plantID, uint current_node_number, const AxisRotation &base_rotation, float internode_radius, float internode_length_max, float internode_length_scale_factor_fraction, float leaf_scale_factor_fraction, float radius_taper, const std::string &shoot_type_label)
Define the stem/trunk shoot (base of plant) to start a new plant. This requires a plant instance has ...
Definition PlantArchitecture.cpp:1899
+
PlantArchitecture::setPlantPhenologicalThresholds
void setPlantPhenologicalThresholds(uint plantID, float time_to_dormancy_break, float time_to_flower_initiation, float time_to_flower_opening, float time_to_fruit_set, float time_to_fruit_maturity, float time_to_senescence, bool is_evergreen=false)
Specify the threshold values for plant phenological stages.
Definition PlantArchitecture.cpp:2657
+
PlantArchitecture::defineShootType
void defineShootType(const std::string &shoot_type_label, const ShootParameters &shoot_params)
Define a new shoot type based on a set of ShootParameters.
Definition PlantArchitecture.cpp:235
PlantArchitecture::buildPlantInstanceFromLibrary
uint buildPlantInstanceFromLibrary(const helios::vec3 &base_position, float age)
Build a plant instance based on the model currently loaded from the library.
Definition PlantLibrary.cpp:27
PlantArchitecture::loadPlantModelFromLibrary
void loadPlantModelFromLibrary(const std::string &plant_label)
Load an existing plant model from the library.
Definition PlantLibrary.cpp:20
-
PlantArchitecture::setPlantPhenologicalThresholds
void setPlantPhenologicalThresholds(uint plantID, float time_to_leaf_out, float time_to_flower_initiation, float time_to_flower_opening, float time_to_fruit_set, float time_to_fruit_maturity, float time_to_senescence)
Specify the threshold values for plant phenological stages.
Definition PlantArchitecture.cpp:2647
-
PlantArchitecture::advanceTime
void advanceTime(float dt)
Advance plant growth by a specified time interval for all plants.
Definition PlantArchitecture.cpp:2671
-
helios::Context::randu
float randu()
Draw a random number from a uniform distribution between 0 and 1.
Definition Context.cpp:1173
+
PlantArchitecture::advanceTime
void advanceTime(float dt)
Advance plant growth by a specified time interval for all plants.
Definition PlantArchitecture.cpp:2682
+
helios::Context::randu
float randu()
Draw a random number from a uniform distribution between 0 and 1.
Definition Context.cpp:1168
helios::Context::getRandomGenerator
std::minstd_rand0 * getRandomGenerator()
Get the random number generator engine.
Definition Context.cpp:47
helios::helios_runtime_error
void helios_runtime_error(const std::string &error_message)
Function to throw a runtime error.
Definition global.cpp:29
helios::deg2rad
float deg2rad(float deg)
Convert degrees to radians.
Definition global.cpp:576
-
helios::make_RGBcolor
RGBcolor make_RGBcolor(float r, float g, float b)
Make an RGBcolor vector.
Definition helios_vector_types.h:951
-
helios::make_vec3
vec3 make_vec3(float x, float y, float z)
Make a vec3 from three floats.
Definition helios_vector_types.h:587
- - - -
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:502
+
helios::make_RGBcolor
RGBcolor make_RGBcolor(float r, float g, float b)
Make an RGBcolor vector.
Definition helios_vector_types.h:954
+
helios::make_vec3
vec3 make_vec3(float x, float y, float z)
Make a vec3 from three floats.
Definition helios_vector_types.h:589
+ + +
PhytomerParameters::phytomer_creation_function
void(* phytomer_creation_function)(std::shared_ptr< Phytomer > phytomer_ptr, uint shoot_node_index, uint parent_shoot_node_index, uint shoot_max_nodes, float plant_age)
Definition PlantArchitecture.h:496
+ +
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:503
diff --git a/doc/html/_plug_ins.html b/doc/html/_plug_ins.html index d2decb995..fa1454138 100644 --- a/doc/html/_plug_ins.html +++ b/doc/html/_plug_ins.html @@ -38,7 +38,7 @@
diff --git a/doc/html/_plugins.html b/doc/html/_plugins.html index 4475cb311..c58a4a5f6 100644 --- a/doc/html/_plugins.html +++ b/doc/html/_plugins.html @@ -38,7 +38,7 @@ diff --git a/doc/html/_radiation_doc.html b/doc/html/_radiation_doc.html index ea9e49f42..a97aa650e 100644 --- a/doc/html/_radiation_doc.html +++ b/doc/html/_radiation_doc.html @@ -38,7 +38,7 @@ @@ -491,7 +491,7 @@

Scattering Iterations

If the reflectivity or transmissivity are set to values greater than 0, scattering calculations are required to simulate the reflected or transmitted radiation transport. These scattering calculations are performed iteratively until there is no energy left to be scattered. The number of scattering iterations is defined using:

-
radiationmodel.setScatteringDepth( "PAR", 5); //set the number of scattering iterations
+
radiationmodel.setScatteringDepth( "PAR", 3); //set the number of scattering iterations

Periodic Boundary Conditions

By default, the radiation model does not enforce any boundary conditions on the edge of the domain (other than being a diffuse ambient radiation source if one has been added). Optionally, users can specify to enforce a periodic boundary in the horizontal in either the x- or y-direction or both. This effectively means that the domain repeats indefinitely, and that any radiation leaving the domain on one boundary will re-enter the domain on the opposite boundary. This is useful for eliminating domain edge effects.

@@ -689,13 +689,13 @@

Visualizer
Class for visualization of simulation results.
Definition Visualizer.h:259
helios::Context
Stores the state associated with simulation.
Definition Context.h:1882
-
helios::Context::setDate
void setDate(int day, int month, int year)
Set simulation date by day, month, year.
Definition Context.cpp:1062
-
helios::Context::setTime
void setTime(int minute, int hour)
Set simulation time.
Definition Context.cpp:1139
-
helios::Context::addSphere
std::vector< uint > addSphere(uint Ndivs, const vec3 &center, float radius)
Add a spherical compound object to the Context.
Definition Context.cpp:5523
-
helios::Context::addTile
std::vector< uint > addTile(const vec3 &center, const vec2 &size, const SphericalCoord &rotation, const int2 &subdiv)
Add a patch that is subdivided into a regular grid of sub-patches (tiled)
Definition Context.cpp:5686
+
helios::Context::setDate
void setDate(int day, int month, int year)
Set simulation date by day, month, year.
Definition Context.cpp:1057
+
helios::Context::setTime
void setTime(int minute, int hour)
Set simulation time.
Definition Context.cpp:1134
+
helios::Context::addSphere
std::vector< uint > addSphere(uint Ndivs, const vec3 &center, float radius)
Add a spherical compound object to the Context.
Definition Context.cpp:5590
+
helios::Context::addTile
std::vector< uint > addTile(const vec3 &center, const vec2 &size, const SphericalCoord &rotation, const int2 &subdiv)
Add a patch that is subdivided into a regular grid of sub-patches (tiled)
Definition Context.cpp:5753
helios::wait
void wait(float seconds)
Wait/sleep for a specified amount of time.
Definition global.cpp:306
- -
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:502
+ +
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:503

Model Outputs

diff --git a/doc/html/_radiation_model_8cpp.html b/doc/html/_radiation_model_8cpp.html index 16f15ea9e..9b85bbaf8 100644 --- a/doc/html/_radiation_model_8cpp.html +++ b/doc/html/_radiation_model_8cpp.html @@ -38,7 +38,7 @@

@@ -112,6 +112,9 @@
Phenological Threshold Description
-
 v1.3.19 +
 v1.3.20
-
 v1.3.19 +
 v1.3.20
-
 v1.3.19 +
 v1.3.20
-
 v1.3.19 +
 v1.3.20
-
 v1.3.19 +
 v1.3.20
-
 v1.3.19 +
 v1.3.20
+ + + @@ -154,7 +157,7 @@

-

Definition at line 5743 of file RadiationModel.cpp.

+

Definition at line 5745 of file RadiationModel.cpp.

@@ -173,7 +176,35 @@

-

Definition at line 5753 of file RadiationModel.cpp.

+

Definition at line 5755 of file RadiationModel.cpp.

+ + + + +

◆ validateOutputPath()

+ +
+
+

Functions

bool validateOutputPath (std::ostringstream &output_directory)
 Validates the file path for output file writing by 1) making sure the directory string has a trailing slash, 2) creating the output directory if it does not exist.
 
void sutilHandleError (RTcontext context, RTresult code, const char *file, int line)
 
void sutilReportError (const char *message)
+ + + + + + +
bool validateOutputPath (std::ostringstream & output_directory)
+
+ +

Validates the file path for output file writing by 1) making sure the directory string has a trailing slash, 2) creating the output directory if it does not exist.

+
Parameters
+ + +
[in,out]output_directoryPath to the directory where output files will be written. If the directory does not exist, it will be created.
+
+
+
Returns
True if the output directory is valid, false otherwise.
+ +

Definition at line 5727 of file RadiationModel.cpp.

diff --git a/doc/html/_radiation_model_8cpp_source.html b/doc/html/_radiation_model_8cpp_source.html index 7a8bb4bda..6eda15a53 100644 --- a/doc/html/_radiation_model_8cpp_source.html +++ b/doc/html/_radiation_model_8cpp_source.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
@@ -211,7 +211,7 @@
100 }
101
102 vec3 dir = peak_dir;
-
103 dir.normalize();
+
103 dir.normalize();
104
105 int N=100;
106 float norm = 0.f;
@@ -916,7 +916,7 @@
730 context->getDomainBoundingSphere( center, radius );
731 context->scalePrimitive(source_model_UUIDs.at(sourceID), make_vec3(1,1,1)*0.1f*radius );
732 vec3 sunvec = source.source_position;
-
733 sunvec.normalize();
+
733 sunvec.normalize();
734 context->translatePrimitive( source_model_UUIDs.at(sourceID), center + sunvec*radius );
735 }else {
736 context->rotatePrimitive( source_model_UUIDs.at(sourceID), source.source_rotation.x, "x" );
@@ -1585,4470 +1585,4474 @@
1342
1343 std::ostringstream outfile;
1344
-
1345 if( image_path.find_last_of('/')==image_path.length()-1 ) {
-
1346 outfile << image_path;
-
1347 }else {
-
1348 outfile << image_path << "/";
-
1349 }
-
1350
-
1351 if( frame>=0 ) {
-
1352 outfile << camera << "_" << imagefile_base << "_" << std::setw(5) << std::setfill('0') << frame_str << ".jpeg";
-
1353 }else{
-
1354 outfile << camera << "_" << imagefile_base << ".jpeg";
-
1355 }
-
1356 std::ofstream testfile(outfile.str());
-
1357
-
1358 if( !testfile.is_open() ){
-
1359 std::cout << "ERROR (RadiationModel::writeCameraImage): image file " << outfile.str() << " could not be opened. Check that the path exists and that you have write permission. Skipping image write for this camera." << std::endl;
-
1360 return;
-
1361 }
-
1362 testfile.close();
+
1345 if( !validateOutputPath(outfile) ){
+
1346 helios_runtime_error("ERROR (RadiationModel::writeCameraImage): Invalid image output directory '" + outfile.str() + "'. Check that the path exists and that you have write permission.");
+
1347 }
+
1348
+
1349 if( frame>=0 ) {
+
1350 outfile << camera << "_" << imagefile_base << "_" << std::setw(5) << std::setfill('0') << frame_str << ".jpeg";
+
1351 }else{
+
1352 outfile << camera << "_" << imagefile_base << ".jpeg";
+
1353 }
+
1354 std::ofstream testfile(outfile.str());
+
1355
+
1356 if( !testfile.is_open() ){
+
1357 std::cout << "ERROR (RadiationModel::writeCameraImage): image file " << outfile.str() << " could not be opened. Check that the path exists and that you have write permission. Skipping image write for this camera." << std::endl;
+
1358 return;
+
1359 }
+
1360 testfile.close();
+
1361
+
1362 int2 camera_resolution = cameras.at(camera).resolution;
1363
-
1364 int2 camera_resolution = cameras.at(camera).resolution;
+
1364 std::vector<RGBcolor> pixel_data(camera_resolution.x*camera_resolution.y);
1365
-
1366 std::vector<RGBcolor> pixel_data(camera_resolution.x*camera_resolution.y);
-
1367
-
1368 RGBcolor pixel_color;
-
1369 for (uint j = 0; j < camera_resolution.y; j++) {
-
1370 for (uint i=0; i < camera_resolution.x; i++) {
-
1371 if( camera_data.size()==1 ){
-
1372 float c = camera_data.front().at(j * camera_resolution.x + i);
-
1373 pixel_color = make_RGBcolor(c,c,c);
-
1374 }else{
-
1375 pixel_color = make_RGBcolor(camera_data.at(0).at(j * camera_resolution.x + i),camera_data.at(1).at(j * camera_resolution.x + i),camera_data.at(2).at(j * camera_resolution.x + i));
-
1376 }
-
1377 pixel_color.scale( flux_to_pixel_conversion );
-
1378 uint ii = camera_resolution.x - i -1;
-
1379 uint jj = camera_resolution.y - j - 1;
-
1380 pixel_data.at(jj * camera_resolution.x + ii) = pixel_color;
-
1381 }
-
1382 }
+
1366 RGBcolor pixel_color;
+
1367 for (uint j = 0; j < camera_resolution.y; j++) {
+
1368 for (uint i=0; i < camera_resolution.x; i++) {
+
1369 if( camera_data.size()==1 ){
+
1370 float c = camera_data.front().at(j * camera_resolution.x + i);
+
1371 pixel_color = make_RGBcolor(c,c,c);
+
1372 }else{
+
1373 pixel_color = make_RGBcolor(camera_data.at(0).at(j * camera_resolution.x + i),camera_data.at(1).at(j * camera_resolution.x + i),camera_data.at(2).at(j * camera_resolution.x + i));
+
1374 }
+
1375 pixel_color.scale( flux_to_pixel_conversion );
+
1376 uint ii = camera_resolution.x - i -1;
+
1377 uint jj = camera_resolution.y - j - 1;
+
1378 pixel_data.at(jj * camera_resolution.x + ii) = pixel_color;
+
1379 }
+
1380 }
+
1381
+
1382 writeJPEG( outfile.str(), camera_resolution.x, camera_resolution.y, pixel_data );
1383
-
1384 writeJPEG( outfile.str(), camera_resolution.x, camera_resolution.y, pixel_data );
-
1385
-
1386}
+
1384}
-
1387
-
-
1388void RadiationModel::writeNormCameraImage(const std::string &camera, const std::vector<std::string> &bands, const std::string &imagefile_base, const std::string &image_path, int frame){
-
1389 float maxval = 0;
-
1390 // Find maximum mean value over all bands
-
1391 for (const std::string& band: bands){
-
1392 std::string global_data_label = "camera_" + camera + "_" + band;
-
1393 if (std::find(cameras.at(camera).band_labels.begin(), cameras.at(camera).band_labels.end(), band ) == cameras.at(camera).band_labels.end()) {
-
1394 std::cout << "ERROR (RadiationModel::writeNormCameraImage): camera " << camera << " band with label " << band << " does not exist. Skipping image write for this camera." << std::endl;
-
1395 return;
-
1396 }else if (!context->doesGlobalDataExist(global_data_label.c_str())) {
-
1397 std::cout << "ERROR (RadiationModel::writeNormCameraImage): image data for camera " << camera << ", band " << band << " has not been created. Did you run the radiation model? Skipping image write for this camera." << std::endl;
-
1398 return;
-
1399 }
-
1400 std::vector<float> cameradata;
-
1401 context->getGlobalData(global_data_label.c_str(), cameradata);
-
1402 for (float val: cameradata){
-
1403 if (val > maxval){
-
1404 maxval = val;
-
1405 }
-
1406 }
-
1407 }
-
1408 // Normalize all bands
-
1409 for (const std::string& band: bands) {
-
1410 std::string global_data_label = "camera_" + camera + "_" + band;
-
1411 std::vector<float> cameradata;
-
1412 context->getGlobalData(global_data_label.c_str(), cameradata);
-
1413 for (float &val: cameradata) {
-
1414 val = val / maxval;
-
1415 }
-
1416 context->setGlobalData(global_data_label.c_str(), HELIOS_TYPE_FLOAT, cameradata.size(), &cameradata[0]);
-
1417 }
-
1418
-
1419 RadiationModel::writeCameraImage(camera, bands, imagefile_base, image_path, frame);
-
1420}
+
1385
+
+
1386void RadiationModel::writeNormCameraImage(const std::string &camera, const std::vector<std::string> &bands, const std::string &imagefile_base, const std::string &image_path, int frame){
+
1387 float maxval = 0;
+
1388 // Find maximum mean value over all bands
+
1389 for (const std::string& band: bands){
+
1390 std::string global_data_label = "camera_" + camera + "_" + band;
+
1391 if (std::find(cameras.at(camera).band_labels.begin(), cameras.at(camera).band_labels.end(), band ) == cameras.at(camera).band_labels.end()) {
+
1392 std::cout << "ERROR (RadiationModel::writeNormCameraImage): camera " << camera << " band with label " << band << " does not exist. Skipping image write for this camera." << std::endl;
+
1393 return;
+
1394 }else if (!context->doesGlobalDataExist(global_data_label.c_str())) {
+
1395 std::cout << "ERROR (RadiationModel::writeNormCameraImage): image data for camera " << camera << ", band " << band << " has not been created. Did you run the radiation model? Skipping image write for this camera." << std::endl;
+
1396 return;
+
1397 }
+
1398 std::vector<float> cameradata;
+
1399 context->getGlobalData(global_data_label.c_str(), cameradata);
+
1400 for (float val: cameradata){
+
1401 if (val > maxval){
+
1402 maxval = val;
+
1403 }
+
1404 }
+
1405 }
+
1406 // Normalize all bands
+
1407 for (const std::string& band: bands) {
+
1408 std::string global_data_label = "camera_" + camera + "_" + band;
+
1409 std::vector<float> cameradata;
+
1410 context->getGlobalData(global_data_label.c_str(), cameradata);
+
1411 for (float &val: cameradata) {
+
1412 val = val / maxval;
+
1413 }
+
1414 context->setGlobalData(global_data_label.c_str(), HELIOS_TYPE_FLOAT, cameradata.size(), &cameradata[0]);
+
1415 }
+
1416
+
1417 RadiationModel::writeCameraImage(camera, bands, imagefile_base, image_path, frame);
+
1418}
+
1419
+
+
1420void RadiationModel::writeCameraImageData(const std::string &camera, const std::string &band, const std::string &imagefile_base, const std::string &image_path, int frame){
1421
-
-
1422void RadiationModel::writeCameraImageData(const std::string &camera, const std::string &band, const std::string &imagefile_base, const std::string &image_path, int frame){
-
1423
-
1424 //check if camera exists
-
1425 if( cameras.find(camera)==cameras.end() ){
-
1426 std::cout << "ERROR (RadiationModel::writeCameraImageData): camera with label " << camera << " does not exist. Skipping image write for this camera." << std::endl;
-
1427 return;
-
1428 }
+
1422 //check if camera exists
+
1423 if( cameras.find(camera)==cameras.end() ){
+
1424 std::cout << "ERROR (RadiationModel::writeCameraImageData): camera with label " << camera << " does not exist. Skipping image write for this camera." << std::endl;
+
1425 return;
+
1426 }
+
1427
+
1428 std::vector<float> camera_data;
1429
-
1430 std::vector<float> camera_data;
-
1431
-
1432 //check if band exists
-
1433 if (std::find(cameras.at(camera).band_labels.begin(), cameras.at(camera).band_labels.end(), band) == cameras.at(camera).band_labels.end()) {
-
1434 std::cout << "ERROR (RadiationModel::writeCameraImageData): camera " << camera << " band with label " << band << " does not exist. Skipping image write for this camera." << std::endl;
-
1435 return;
-
1436 }
+
1430 //check if band exists
+
1431 if (std::find(cameras.at(camera).band_labels.begin(), cameras.at(camera).band_labels.end(), band) == cameras.at(camera).band_labels.end()) {
+
1432 std::cout << "ERROR (RadiationModel::writeCameraImageData): camera " << camera << " band with label " << band << " does not exist. Skipping image write for this camera." << std::endl;
+
1433 return;
+
1434 }
+
1435
+
1436 std::string global_data_label = "camera_" + camera + "_" + band;
1437
-
1438 std::string global_data_label = "camera_" + camera + "_" + band;
-
1439
-
1440 if (!context->doesGlobalDataExist(global_data_label.c_str())) {
-
1441 std::cout << "ERROR (RadiationModel::writeCameraImageData): image data for camera " << camera << ", band " << band << " has not been created. Did you run the radiation model? Skipping image write for this camera." << std::endl;
-
1442 return;
-
1443 }
+
1438 if (!context->doesGlobalDataExist(global_data_label.c_str())) {
+
1439 std::cout << "ERROR (RadiationModel::writeCameraImageData): image data for camera " << camera << ", band " << band << " has not been created. Did you run the radiation model? Skipping image write for this camera." << std::endl;
+
1440 return;
+
1441 }
+
1442
+
1443 context->getGlobalData(global_data_label.c_str(), camera_data );
1444
-
1445 context->getGlobalData(global_data_label.c_str(), camera_data );
-
1446
-
1447 std::string frame_str;
-
1448 if( frame>=0 ) {
-
1449 frame_str = std::to_string(frame);
-
1450 }
+
1445 std::string frame_str;
+
1446 if( frame>=0 ) {
+
1447 frame_str = std::to_string(frame);
+
1448 }
+
1449
+
1450 std::ostringstream outfile;
1451
-
1452 std::ostringstream outfile;
-
1453
-
1454 if( image_path.find_last_of('/')==image_path.length()-1 ) {
-
1455 outfile << image_path;
-
1456 }else {
-
1457 outfile << image_path << "/";
-
1458 }
-
1459
-
1460 if( frame>=0 ) {
-
1461 outfile << camera << "_" << imagefile_base << "_" << std::setw(5) << std::setfill('0') << frame_str << ".txt";
-
1462 }else{
-
1463 outfile << camera << "_" << imagefile_base << ".txt";
-
1464 }
-
1465
-
1466 std::ofstream outfilestream(outfile.str());
-
1467
-
1468 if( !outfilestream.is_open() ){
-
1469 std::cout << "ERROR (RadiationModel::writeCameraImageData): image file " << outfile.str() << " could not be opened. Check that the path exists and that you have write permission. Skipping image write for this camera." << std::endl;
-
1470 return;
-
1471 }
-
1472
-
1473 int2 camera_resolution = cameras.at(camera).resolution;
-
1474
-
1475 for ( int j = 0; j<camera_resolution.y; j++ ) {
-
1476 for ( int i = camera_resolution.x-1; i >= 0; i-- ) {
-
1477 outfilestream << camera_data.at(j*camera_resolution.x + i ) << " ";
-
1478 }
-
1479 outfilestream << "\n";
-
1480 }
+
1452 if( !validateOutputPath(outfile) ){
+
1453 helios_runtime_error("ERROR (RadiationModel::writeCameraImage): Invalid image output directory '" + outfile.str() + "'. Check that the path exists and that you have write permission.");
+
1454 }
+
1455
+
1456 if( frame>=0 ) {
+
1457 outfile << camera << "_" << imagefile_base << "_" << std::setw(5) << std::setfill('0') << frame_str << ".txt";
+
1458 }else{
+
1459 outfile << camera << "_" << imagefile_base << ".txt";
+
1460 }
+
1461
+
1462 std::ofstream outfilestream(outfile.str());
+
1463
+
1464 if( !outfilestream.is_open() ){
+
1465 std::cout << "ERROR (RadiationModel::writeCameraImageData): image file " << outfile.str() << " could not be opened. Check that the path exists and that you have write permission. Skipping image write for this camera." << std::endl;
+
1466 return;
+
1467 }
+
1468
+
1469 int2 camera_resolution = cameras.at(camera).resolution;
+
1470
+
1471 for ( int j = 0; j<camera_resolution.y; j++ ) {
+
1472 for ( int i = camera_resolution.x-1; i >= 0; i-- ) {
+
1473 outfilestream << camera_data.at(j*camera_resolution.x + i ) << " ";
+
1474 }
+
1475 outfilestream << "\n";
+
1476 }
+
1477
+
1478 outfilestream.close();
+
1479
+
1480}
+
1481
-
1482 outfilestream.close();
+
1482void RadiationModel::initializeOptiX() {
1483
-
1484}
-
-
1485
-
1486void RadiationModel::initializeOptiX() {
+
1484 /* Context */
+
1485 RT_CHECK_ERROR( rtContextCreate( &OptiX_Context ) );
+
1486 RT_CHECK_ERROR( rtContextSetPrintEnabled( OptiX_Context, 1 ) );
1487
-
1488 /* Context */
-
1489 RT_CHECK_ERROR( rtContextCreate( &OptiX_Context ) );
-
1490 RT_CHECK_ERROR( rtContextSetPrintEnabled( OptiX_Context, 1 ) );
-
1491
-
1492 RT_CHECK_ERROR( rtContextSetRayTypeCount( OptiX_Context, 4 ) );
-
1493 //ray types are:
-
1494 // 0: direct_ray_type
-
1495 // 1: diffuse_ray_type
-
1496 // 2: camera_ray_type
-
1497 // 3: pixel_label_ray_type
-
1498
-
1499 RT_CHECK_ERROR( rtContextSetEntryPointCount( OptiX_Context, 4 ) );
-
1500 //ray entery points are
-
1501 // 0: direct_raygen
-
1502 // 1: diffuse_raygen
-
1503 // 2: camera_raygen
-
1504 // 3: pixel_label_raygen
-
1505
-
1506 /* Ray Types */
-
1507 RT_CHECK_ERROR( rtContextDeclareVariable( OptiX_Context, "direct_ray_type", &direct_ray_type_RTvariable ) );
-
1508 RT_CHECK_ERROR( rtVariableSet1ui( direct_ray_type_RTvariable, RAYTYPE_DIRECT ) );
-
1509 RT_CHECK_ERROR( rtContextDeclareVariable( OptiX_Context, "diffuse_ray_type", &diffuse_ray_type_RTvariable ) );
-
1510 RT_CHECK_ERROR( rtVariableSet1ui( diffuse_ray_type_RTvariable, RAYTYPE_DIFFUSE ) );
-
1511 RT_CHECK_ERROR( rtContextDeclareVariable( OptiX_Context, "camera_ray_type", &camera_ray_type_RTvariable ) );
-
1512 RT_CHECK_ERROR( rtVariableSet1ui( camera_ray_type_RTvariable, RAYTYPE_CAMERA ) );
-
1513 RT_CHECK_ERROR( rtContextDeclareVariable( OptiX_Context, "pixel_label_ray_type", &pixel_label_ray_type_RTvariable ) );
-
1514 RT_CHECK_ERROR( rtVariableSet1ui( pixel_label_ray_type_RTvariable, RAYTYPE_PIXEL_LABEL ) );
-
1515
-
1516 /* Ray Generation Program */
-
1517
-
1518 RT_CHECK_ERROR( rtProgramCreateFromPTXFile( OptiX_Context, "plugins/radiation/cuda_compile_ptx_generated_rayGeneration.cu.ptx", "direct_raygen", &direct_raygen ) );
-
1519 RT_CHECK_ERROR( rtContextSetRayGenerationProgram( OptiX_Context, RAYTYPE_DIRECT, direct_raygen ) );
-
1520 RT_CHECK_ERROR( rtProgramCreateFromPTXFile( OptiX_Context, "plugins/radiation/cuda_compile_ptx_generated_rayGeneration.cu.ptx", "diffuse_raygen", &diffuse_raygen ) );
-
1521 RT_CHECK_ERROR( rtContextSetRayGenerationProgram( OptiX_Context, RAYTYPE_DIFFUSE, diffuse_raygen ) );
-
1522 RT_CHECK_ERROR( rtProgramCreateFromPTXFile( OptiX_Context, "plugins/radiation/cuda_compile_ptx_generated_rayGeneration.cu.ptx", "camera_raygen", &camera_raygen ) );
-
1523 RT_CHECK_ERROR( rtContextSetRayGenerationProgram( OptiX_Context, RAYTYPE_CAMERA, camera_raygen ) );
-
1524 RT_CHECK_ERROR( rtProgramCreateFromPTXFile( OptiX_Context, "plugins/radiation/cuda_compile_ptx_generated_rayGeneration.cu.ptx", "pixel_label_raygen", &pixel_label_raygen ) );
-
1525 RT_CHECK_ERROR( rtContextSetRayGenerationProgram( OptiX_Context, RAYTYPE_PIXEL_LABEL, pixel_label_raygen ) );
-
1526
-
1527 /* Declare Buffers and Variables */
-
1528
-
1529 //primitive reflectivity buffer
-
1530 addBuffer( "rho", rho_RTbuffer, rho_RTvariable, RT_BUFFER_INPUT, RT_FORMAT_FLOAT, 1 );
-
1531 //primitive transmissivity buffer
-
1532 addBuffer( "tau", tau_RTbuffer, tau_RTvariable, RT_BUFFER_INPUT, RT_FORMAT_FLOAT, 1 );
-
1533
-
1534 //primitive reflectivity buffer
-
1535 addBuffer( "rho_cam", rho_cam_RTbuffer, rho_cam_RTvariable, RT_BUFFER_INPUT, RT_FORMAT_FLOAT, 1 );
-
1536 //primitive transmissivity buffer
-
1537 addBuffer( "tau_cam", tau_cam_RTbuffer, tau_cam_RTvariable, RT_BUFFER_INPUT, RT_FORMAT_FLOAT, 1 );
-
1538
-
1539 //primitive transformation matrix buffer
-
1540 addBuffer( "transform_matrix", transform_matrix_RTbuffer, transform_matrix_RTvariable, RT_BUFFER_INPUT, RT_FORMAT_FLOAT, 2 );
-
1541
-
1542 //primitive type buffer
-
1543 addBuffer( "primitive_type", primitive_type_RTbuffer, primitive_type_RTvariable, RT_BUFFER_INPUT, RT_FORMAT_UNSIGNED_INT, 1 );
-
1544
-
1545 //primitive area buffer
-
1546 addBuffer( "primitive_area", primitive_area_RTbuffer, primitive_area_RTvariable, RT_BUFFER_INPUT, RT_FORMAT_FLOAT, 1 );
-
1547
-
1548 //primitive UUID buffers
-
1549 addBuffer( "patch_UUID", patch_UUID_RTbuffer, patch_UUID_RTvariable, RT_BUFFER_INPUT, RT_FORMAT_UNSIGNED_INT, 1 );
-
1550 addBuffer( "triangle_UUID", triangle_UUID_RTbuffer, triangle_UUID_RTvariable, RT_BUFFER_INPUT, RT_FORMAT_UNSIGNED_INT, 1 );
-
1551 addBuffer( "disk_UUID", disk_UUID_RTbuffer, disk_UUID_RTvariable, RT_BUFFER_INPUT, RT_FORMAT_UNSIGNED_INT, 1 );
-
1552 addBuffer( "tile_UUID", tile_UUID_RTbuffer, tile_UUID_RTvariable, RT_BUFFER_INPUT, RT_FORMAT_UNSIGNED_INT, 1 );
-
1553 addBuffer( "voxel_UUID", voxel_UUID_RTbuffer, voxel_UUID_RTvariable, RT_BUFFER_INPUT, RT_FORMAT_UNSIGNED_INT, 1 );
-
1554
-
1555 //Object ID Buffer
-
1556 addBuffer( "objectID", objectID_RTbuffer, objectID_RTvariable, RT_BUFFER_INPUT, RT_FORMAT_UNSIGNED_INT, 1 );
-
1557
-
1558 //Primitive ID Buffer
-
1559 addBuffer( "primitiveID", primitiveID_RTbuffer, primitiveID_RTvariable, RT_BUFFER_INPUT, RT_FORMAT_UNSIGNED_INT, 1 );
-
1560
-
1561 //primitive two-sided flag buffer
-
1562 addBuffer( "twosided_flag", twosided_flag_RTbuffer, twosided_flag_RTvariable, RT_BUFFER_INPUT, RT_FORMAT_BYTE, 1 );
-
1563
-
1564 //patch buffers
-
1565 addBuffer( "patch_vertices", patch_vertices_RTbuffer, patch_vertices_RTvariable, RT_BUFFER_INPUT, RT_FORMAT_FLOAT3, 2 );
-
1566
-
1567 //triangle buffers
-
1568 addBuffer( "triangle_vertices", triangle_vertices_RTbuffer, triangle_vertices_RTvariable, RT_BUFFER_INPUT, RT_FORMAT_FLOAT3, 2 );
-
1569
-
1570 //disk buffers
-
1571 addBuffer( "disk_centers", disk_centers_RTbuffer, disk_centers_RTvariable, RT_BUFFER_INPUT, RT_FORMAT_FLOAT3, 1 );
-
1572 addBuffer( "disk_radii", disk_radii_RTbuffer, disk_radii_RTvariable, RT_BUFFER_INPUT, RT_FORMAT_FLOAT, 1 );
-
1573 addBuffer( "disk_normals", disk_normals_RTbuffer, disk_normals_RTvariable, RT_BUFFER_INPUT, RT_FORMAT_FLOAT3, 1 );
-
1574
-
1575 //tile buffers
-
1576 addBuffer( "tile_vertices", tile_vertices_RTbuffer, tile_vertices_RTvariable, RT_BUFFER_INPUT, RT_FORMAT_FLOAT3, 2 );
-
1577
-
1578 //voxel buffers
-
1579 addBuffer( "voxel_vertices", voxel_vertices_RTbuffer, voxel_vertices_RTvariable, RT_BUFFER_INPUT, RT_FORMAT_FLOAT3, 2 );
-
1580
-
1581 //object buffers
-
1582 addBuffer( "object_subdivisions", object_subdivisions_RTbuffer, object_subdivisions_RTvariable, RT_BUFFER_INPUT, RT_FORMAT_INT2, 1 );
-
1583
-
1584 //radiation energy rate data buffers
-
1585 // - in - //
-
1586 addBuffer( "radiation_in", radiation_in_RTbuffer, radiation_in_RTvariable, RT_BUFFER_INPUT_OUTPUT, RT_FORMAT_FLOAT, 1 );
-
1587 // - out,top - //
-
1588 addBuffer( "radiation_out_top", radiation_out_top_RTbuffer, radiation_out_top_RTvariable, RT_BUFFER_INPUT_OUTPUT, RT_FORMAT_FLOAT, 1 );
-
1589 // - out,bottom - //
-
1590 addBuffer( "radiation_out_bottom", radiation_out_bottom_RTbuffer, radiation_out_bottom_RTvariable, RT_BUFFER_INPUT_OUTPUT, RT_FORMAT_FLOAT, 1 );
-
1591 // - camera - //
-
1592 addBuffer( "radiation_in_camera", radiation_in_camera_RTbuffer, radiation_in_camera_RTvariable, RT_BUFFER_INPUT_OUTPUT, RT_FORMAT_FLOAT, 1 );
-
1593 addBuffer( "camera_pixel_label", camera_pixel_label_RTbuffer, camera_pixel_label_RTvariable, RT_BUFFER_INPUT_OUTPUT, RT_FORMAT_UNSIGNED_INT, 1 );
-
1594 addBuffer( "camera_pixel_depth", camera_pixel_depth_RTbuffer, camera_pixel_depth_RTvariable, RT_BUFFER_INPUT_OUTPUT, RT_FORMAT_FLOAT, 1 );
-
1595
-
1596 //primitive scattering buffers
-
1597 // - top - //
-
1598 addBuffer( "scatter_buff_top", scatter_buff_top_RTbuffer, scatter_buff_top_RTvariable, RT_BUFFER_INPUT_OUTPUT, RT_FORMAT_FLOAT, 1 );
-
1599 // - bottom - //
-
1600 addBuffer( "scatter_buff_bottom", scatter_buff_bottom_RTbuffer, scatter_buff_bottom_RTvariable, RT_BUFFER_INPUT_OUTPUT, RT_FORMAT_FLOAT, 1 );
-
1601
-
1602 //Energy absorbed by "sky"
-
1603 addBuffer( "Rsky", Rsky_RTbuffer, Rsky_RTvariable, RT_BUFFER_INPUT_OUTPUT, RT_FORMAT_FLOAT, 1 );
+
1488 RT_CHECK_ERROR( rtContextSetRayTypeCount( OptiX_Context, 4 ) );
+
1489 //ray types are:
+
1490 // 0: direct_ray_type
+
1491 // 1: diffuse_ray_type
+
1492 // 2: camera_ray_type
+
1493 // 3: pixel_label_ray_type
+
1494
+
1495 RT_CHECK_ERROR( rtContextSetEntryPointCount( OptiX_Context, 4 ) );
+
1496 //ray entery points are
+
1497 // 0: direct_raygen
+
1498 // 1: diffuse_raygen
+
1499 // 2: camera_raygen
+
1500 // 3: pixel_label_raygen
+
1501
+
1502 /* Ray Types */
+
1503 RT_CHECK_ERROR( rtContextDeclareVariable( OptiX_Context, "direct_ray_type", &direct_ray_type_RTvariable ) );
+
1504 RT_CHECK_ERROR( rtVariableSet1ui( direct_ray_type_RTvariable, RAYTYPE_DIRECT ) );
+
1505 RT_CHECK_ERROR( rtContextDeclareVariable( OptiX_Context, "diffuse_ray_type", &diffuse_ray_type_RTvariable ) );
+
1506 RT_CHECK_ERROR( rtVariableSet1ui( diffuse_ray_type_RTvariable, RAYTYPE_DIFFUSE ) );
+
1507 RT_CHECK_ERROR( rtContextDeclareVariable( OptiX_Context, "camera_ray_type", &camera_ray_type_RTvariable ) );
+
1508 RT_CHECK_ERROR( rtVariableSet1ui( camera_ray_type_RTvariable, RAYTYPE_CAMERA ) );
+
1509 RT_CHECK_ERROR( rtContextDeclareVariable( OptiX_Context, "pixel_label_ray_type", &pixel_label_ray_type_RTvariable ) );
+
1510 RT_CHECK_ERROR( rtVariableSet1ui( pixel_label_ray_type_RTvariable, RAYTYPE_PIXEL_LABEL ) );
+
1511
+
1512 /* Ray Generation Program */
+
1513
+
1514 RT_CHECK_ERROR( rtProgramCreateFromPTXFile( OptiX_Context, "plugins/radiation/cuda_compile_ptx_generated_rayGeneration.cu.ptx", "direct_raygen", &direct_raygen ) );
+
1515 RT_CHECK_ERROR( rtContextSetRayGenerationProgram( OptiX_Context, RAYTYPE_DIRECT, direct_raygen ) );
+
1516 RT_CHECK_ERROR( rtProgramCreateFromPTXFile( OptiX_Context, "plugins/radiation/cuda_compile_ptx_generated_rayGeneration.cu.ptx", "diffuse_raygen", &diffuse_raygen ) );
+
1517 RT_CHECK_ERROR( rtContextSetRayGenerationProgram( OptiX_Context, RAYTYPE_DIFFUSE, diffuse_raygen ) );
+
1518 RT_CHECK_ERROR( rtProgramCreateFromPTXFile( OptiX_Context, "plugins/radiation/cuda_compile_ptx_generated_rayGeneration.cu.ptx", "camera_raygen", &camera_raygen ) );
+
1519 RT_CHECK_ERROR( rtContextSetRayGenerationProgram( OptiX_Context, RAYTYPE_CAMERA, camera_raygen ) );
+
1520 RT_CHECK_ERROR( rtProgramCreateFromPTXFile( OptiX_Context, "plugins/radiation/cuda_compile_ptx_generated_rayGeneration.cu.ptx", "pixel_label_raygen", &pixel_label_raygen ) );
+
1521 RT_CHECK_ERROR( rtContextSetRayGenerationProgram( OptiX_Context, RAYTYPE_PIXEL_LABEL, pixel_label_raygen ) );
+
1522
+
1523 /* Declare Buffers and Variables */
+
1524
+
1525 //primitive reflectivity buffer
+
1526 addBuffer( "rho", rho_RTbuffer, rho_RTvariable, RT_BUFFER_INPUT, RT_FORMAT_FLOAT, 1 );
+
1527 //primitive transmissivity buffer
+
1528 addBuffer( "tau", tau_RTbuffer, tau_RTvariable, RT_BUFFER_INPUT, RT_FORMAT_FLOAT, 1 );
+
1529
+
1530 //primitive reflectivity buffer
+
1531 addBuffer( "rho_cam", rho_cam_RTbuffer, rho_cam_RTvariable, RT_BUFFER_INPUT, RT_FORMAT_FLOAT, 1 );
+
1532 //primitive transmissivity buffer
+
1533 addBuffer( "tau_cam", tau_cam_RTbuffer, tau_cam_RTvariable, RT_BUFFER_INPUT, RT_FORMAT_FLOAT, 1 );
+
1534
+
1535 //primitive transformation matrix buffer
+
1536 addBuffer( "transform_matrix", transform_matrix_RTbuffer, transform_matrix_RTvariable, RT_BUFFER_INPUT, RT_FORMAT_FLOAT, 2 );
+
1537
+
1538 //primitive type buffer
+
1539 addBuffer( "primitive_type", primitive_type_RTbuffer, primitive_type_RTvariable, RT_BUFFER_INPUT, RT_FORMAT_UNSIGNED_INT, 1 );
+
1540
+
1541 //primitive area buffer
+
1542 addBuffer( "primitive_area", primitive_area_RTbuffer, primitive_area_RTvariable, RT_BUFFER_INPUT, RT_FORMAT_FLOAT, 1 );
+
1543
+
1544 //primitive UUID buffers
+
1545 addBuffer( "patch_UUID", patch_UUID_RTbuffer, patch_UUID_RTvariable, RT_BUFFER_INPUT, RT_FORMAT_UNSIGNED_INT, 1 );
+
1546 addBuffer( "triangle_UUID", triangle_UUID_RTbuffer, triangle_UUID_RTvariable, RT_BUFFER_INPUT, RT_FORMAT_UNSIGNED_INT, 1 );
+
1547 addBuffer( "disk_UUID", disk_UUID_RTbuffer, disk_UUID_RTvariable, RT_BUFFER_INPUT, RT_FORMAT_UNSIGNED_INT, 1 );
+
1548 addBuffer( "tile_UUID", tile_UUID_RTbuffer, tile_UUID_RTvariable, RT_BUFFER_INPUT, RT_FORMAT_UNSIGNED_INT, 1 );
+
1549 addBuffer( "voxel_UUID", voxel_UUID_RTbuffer, voxel_UUID_RTvariable, RT_BUFFER_INPUT, RT_FORMAT_UNSIGNED_INT, 1 );
+
1550
+
1551 //Object ID Buffer
+
1552 addBuffer( "objectID", objectID_RTbuffer, objectID_RTvariable, RT_BUFFER_INPUT, RT_FORMAT_UNSIGNED_INT, 1 );
+
1553
+
1554 //Primitive ID Buffer
+
1555 addBuffer( "primitiveID", primitiveID_RTbuffer, primitiveID_RTvariable, RT_BUFFER_INPUT, RT_FORMAT_UNSIGNED_INT, 1 );
+
1556
+
1557 //primitive two-sided flag buffer
+
1558 addBuffer( "twosided_flag", twosided_flag_RTbuffer, twosided_flag_RTvariable, RT_BUFFER_INPUT, RT_FORMAT_BYTE, 1 );
+
1559
+
1560 //patch buffers
+
1561 addBuffer( "patch_vertices", patch_vertices_RTbuffer, patch_vertices_RTvariable, RT_BUFFER_INPUT, RT_FORMAT_FLOAT3, 2 );
+
1562
+
1563 //triangle buffers
+
1564 addBuffer( "triangle_vertices", triangle_vertices_RTbuffer, triangle_vertices_RTvariable, RT_BUFFER_INPUT, RT_FORMAT_FLOAT3, 2 );
+
1565
+
1566 //disk buffers
+
1567 addBuffer( "disk_centers", disk_centers_RTbuffer, disk_centers_RTvariable, RT_BUFFER_INPUT, RT_FORMAT_FLOAT3, 1 );
+
1568 addBuffer( "disk_radii", disk_radii_RTbuffer, disk_radii_RTvariable, RT_BUFFER_INPUT, RT_FORMAT_FLOAT, 1 );
+
1569 addBuffer( "disk_normals", disk_normals_RTbuffer, disk_normals_RTvariable, RT_BUFFER_INPUT, RT_FORMAT_FLOAT3, 1 );
+
1570
+
1571 //tile buffers
+
1572 addBuffer( "tile_vertices", tile_vertices_RTbuffer, tile_vertices_RTvariable, RT_BUFFER_INPUT, RT_FORMAT_FLOAT3, 2 );
+
1573
+
1574 //voxel buffers
+
1575 addBuffer( "voxel_vertices", voxel_vertices_RTbuffer, voxel_vertices_RTvariable, RT_BUFFER_INPUT, RT_FORMAT_FLOAT3, 2 );
+
1576
+
1577 //object buffers
+
1578 addBuffer( "object_subdivisions", object_subdivisions_RTbuffer, object_subdivisions_RTvariable, RT_BUFFER_INPUT, RT_FORMAT_INT2, 1 );
+
1579
+
1580 //radiation energy rate data buffers
+
1581 // - in - //
+
1582 addBuffer( "radiation_in", radiation_in_RTbuffer, radiation_in_RTvariable, RT_BUFFER_INPUT_OUTPUT, RT_FORMAT_FLOAT, 1 );
+
1583 // - out,top - //
+
1584 addBuffer( "radiation_out_top", radiation_out_top_RTbuffer, radiation_out_top_RTvariable, RT_BUFFER_INPUT_OUTPUT, RT_FORMAT_FLOAT, 1 );
+
1585 // - out,bottom - //
+
1586 addBuffer( "radiation_out_bottom", radiation_out_bottom_RTbuffer, radiation_out_bottom_RTvariable, RT_BUFFER_INPUT_OUTPUT, RT_FORMAT_FLOAT, 1 );
+
1587 // - camera - //
+
1588 addBuffer( "radiation_in_camera", radiation_in_camera_RTbuffer, radiation_in_camera_RTvariable, RT_BUFFER_INPUT_OUTPUT, RT_FORMAT_FLOAT, 1 );
+
1589 addBuffer( "camera_pixel_label", camera_pixel_label_RTbuffer, camera_pixel_label_RTvariable, RT_BUFFER_INPUT_OUTPUT, RT_FORMAT_UNSIGNED_INT, 1 );
+
1590 addBuffer( "camera_pixel_depth", camera_pixel_depth_RTbuffer, camera_pixel_depth_RTvariable, RT_BUFFER_INPUT_OUTPUT, RT_FORMAT_FLOAT, 1 );
+
1591
+
1592 //primitive scattering buffers
+
1593 // - top - //
+
1594 addBuffer( "scatter_buff_top", scatter_buff_top_RTbuffer, scatter_buff_top_RTvariable, RT_BUFFER_INPUT_OUTPUT, RT_FORMAT_FLOAT, 1 );
+
1595 // - bottom - //
+
1596 addBuffer( "scatter_buff_bottom", scatter_buff_bottom_RTbuffer, scatter_buff_bottom_RTvariable, RT_BUFFER_INPUT_OUTPUT, RT_FORMAT_FLOAT, 1 );
+
1597
+
1598 //Energy absorbed by "sky"
+
1599 addBuffer( "Rsky", Rsky_RTbuffer, Rsky_RTvariable, RT_BUFFER_INPUT_OUTPUT, RT_FORMAT_FLOAT, 1 );
+
1600
+
1601 //number of external radiation sources
+
1602 RT_CHECK_ERROR( rtContextDeclareVariable( OptiX_Context, "Nsources", &Nsources_RTvariable ) );
+
1603 RT_CHECK_ERROR( rtVariableSet1ui( Nsources_RTvariable,0 ) );
1604
-
1605 //number of external radiation sources
-
1606 RT_CHECK_ERROR( rtContextDeclareVariable( OptiX_Context, "Nsources", &Nsources_RTvariable ) );
-
1607 RT_CHECK_ERROR( rtVariableSet1ui( Nsources_RTvariable,0 ) );
-
1608
-
1609 //External radiation source positions
-
1610 addBuffer( "source_positions", source_positions_RTbuffer, source_positions_RTvariable, RT_BUFFER_INPUT, RT_FORMAT_FLOAT3, 1 );
-
1611
-
1612 //External radiation source widths
-
1613 addBuffer( "source_widths", source_widths_RTbuffer, source_widths_RTvariable, RT_BUFFER_INPUT, RT_FORMAT_FLOAT2, 1 );
-
1614
-
1615 //External radiation source rotations
-
1616 addBuffer( "source_rotations", source_rotations_RTbuffer, source_rotations_RTvariable, RT_BUFFER_INPUT, RT_FORMAT_FLOAT3, 1 );
-
1617
-
1618 //External radiation source types
-
1619 addBuffer( "source_types", source_types_RTbuffer, source_types_RTvariable, RT_BUFFER_INPUT, RT_FORMAT_UNSIGNED_INT, 1 );
-
1620
-
1621 //External radiation source fluxes
-
1622 addBuffer( "source_fluxes", source_fluxes_RTbuffer, source_fluxes_RTvariable, RT_BUFFER_INPUT, RT_FORMAT_FLOAT, 1 );
+
1605 //External radiation source positions
+
1606 addBuffer( "source_positions", source_positions_RTbuffer, source_positions_RTvariable, RT_BUFFER_INPUT, RT_FORMAT_FLOAT3, 1 );
+
1607
+
1608 //External radiation source widths
+
1609 addBuffer( "source_widths", source_widths_RTbuffer, source_widths_RTvariable, RT_BUFFER_INPUT, RT_FORMAT_FLOAT2, 1 );
+
1610
+
1611 //External radiation source rotations
+
1612 addBuffer( "source_rotations", source_rotations_RTbuffer, source_rotations_RTvariable, RT_BUFFER_INPUT, RT_FORMAT_FLOAT3, 1 );
+
1613
+
1614 //External radiation source types
+
1615 addBuffer( "source_types", source_types_RTbuffer, source_types_RTvariable, RT_BUFFER_INPUT, RT_FORMAT_UNSIGNED_INT, 1 );
+
1616
+
1617 //External radiation source fluxes
+
1618 addBuffer( "source_fluxes", source_fluxes_RTbuffer, source_fluxes_RTvariable, RT_BUFFER_INPUT, RT_FORMAT_FLOAT, 1 );
+
1619
+
1620 //number of radiation bands
+
1621 RT_CHECK_ERROR( rtContextDeclareVariable( OptiX_Context, "Nbands", &Nbands_RTvariable ) );
+
1622 RT_CHECK_ERROR( rtVariableSet1ui( Nbands_RTvariable,0 ) );
1623
-
1624 //number of radiation bands
-
1625 RT_CHECK_ERROR( rtContextDeclareVariable( OptiX_Context, "Nbands", &Nbands_RTvariable ) );
-
1626 RT_CHECK_ERROR( rtVariableSet1ui( Nbands_RTvariable,0 ) );
-
1627
-
1628 //flag to disable launches for certain bands
-
1629 addBuffer( "band_launch_flag", band_launch_flag_RTbuffer, band_launch_flag_RTvariable, RT_BUFFER_INPUT, RT_FORMAT_BYTE, 1 );
+
1624 //flag to disable launches for certain bands
+
1625 addBuffer( "band_launch_flag", band_launch_flag_RTbuffer, band_launch_flag_RTvariable, RT_BUFFER_INPUT, RT_FORMAT_BYTE, 1 );
+
1626
+
1627 //number of Context primitives
+
1628 RT_CHECK_ERROR( rtContextDeclareVariable( OptiX_Context, "Nprimitives", &Nprimitives_RTvariable ) );
+
1629 RT_CHECK_ERROR( rtVariableSet1ui( Nprimitives_RTvariable,0 ) );
1630
-
1631 //number of Context primitives
-
1632 RT_CHECK_ERROR( rtContextDeclareVariable( OptiX_Context, "Nprimitives", &Nprimitives_RTvariable ) );
-
1633 RT_CHECK_ERROR( rtVariableSet1ui( Nprimitives_RTvariable,0 ) );
-
1634
-
1635 //Flux of diffuse radiation
-
1636 addBuffer( "diffuse_flux", diffuse_flux_RTbuffer, diffuse_flux_RTvariable, RT_BUFFER_INPUT, RT_FORMAT_FLOAT, 1 );
-
1637
-
1638 //Diffuse distribution extinction coefficient of ambient diffuse radiation
-
1639 addBuffer( "diffuse_extinction", diffuse_extinction_RTbuffer, diffuse_extinction_RTvariable, RT_BUFFER_INPUT, RT_FORMAT_FLOAT, 1 );
-
1640
-
1641 //Direction of peak diffuse radiation
-
1642 addBuffer( "diffuse_peak_dir", diffuse_peak_dir_RTbuffer, diffuse_peak_dir_RTvariable, RT_BUFFER_INPUT, RT_FORMAT_FLOAT3, 1 );
-
1643
-
1644 //Diffuse distribution normalization factor
-
1645 addBuffer( "diffuse_dist_norm", diffuse_dist_norm_RTbuffer, diffuse_dist_norm_RTvariable, RT_BUFFER_INPUT, RT_FORMAT_FLOAT, 1 );
-
1646
-
1647 //Bounding sphere radius and center
-
1648 RT_CHECK_ERROR( rtContextDeclareVariable( OptiX_Context, "bound_sphere_radius", &bound_sphere_radius_RTvariable ) );
-
1649 RT_CHECK_ERROR( rtVariableSet1f( bound_sphere_radius_RTvariable, 0.f ));
-
1650 RT_CHECK_ERROR( rtContextDeclareVariable( OptiX_Context, "bound_sphere_center", &bound_sphere_center_RTvariable ) );
-
1651 RT_CHECK_ERROR( rtVariableSet3f( bound_sphere_center_RTvariable, 0.f, 0.f, 0.f ));
+
1631 //Flux of diffuse radiation
+
1632 addBuffer( "diffuse_flux", diffuse_flux_RTbuffer, diffuse_flux_RTvariable, RT_BUFFER_INPUT, RT_FORMAT_FLOAT, 1 );
+
1633
+
1634 //Diffuse distribution extinction coefficient of ambient diffuse radiation
+
1635 addBuffer( "diffuse_extinction", diffuse_extinction_RTbuffer, diffuse_extinction_RTvariable, RT_BUFFER_INPUT, RT_FORMAT_FLOAT, 1 );
+
1636
+
1637 //Direction of peak diffuse radiation
+
1638 addBuffer( "diffuse_peak_dir", diffuse_peak_dir_RTbuffer, diffuse_peak_dir_RTvariable, RT_BUFFER_INPUT, RT_FORMAT_FLOAT3, 1 );
+
1639
+
1640 //Diffuse distribution normalization factor
+
1641 addBuffer( "diffuse_dist_norm", diffuse_dist_norm_RTbuffer, diffuse_dist_norm_RTvariable, RT_BUFFER_INPUT, RT_FORMAT_FLOAT, 1 );
+
1642
+
1643 //Bounding sphere radius and center
+
1644 RT_CHECK_ERROR( rtContextDeclareVariable( OptiX_Context, "bound_sphere_radius", &bound_sphere_radius_RTvariable ) );
+
1645 RT_CHECK_ERROR( rtVariableSet1f( bound_sphere_radius_RTvariable, 0.f ));
+
1646 RT_CHECK_ERROR( rtContextDeclareVariable( OptiX_Context, "bound_sphere_center", &bound_sphere_center_RTvariable ) );
+
1647 RT_CHECK_ERROR( rtVariableSet3f( bound_sphere_center_RTvariable, 0.f, 0.f, 0.f ));
+
1648
+
1649 //Bounding Box
+
1650 addBuffer( "bbox_UUID", bbox_UUID_RTbuffer, bbox_UUID_RTvariable, RT_BUFFER_INPUT, RT_FORMAT_UNSIGNED_INT, 1 );
+
1651 addBuffer( "bbox_vertices", bbox_vertices_RTbuffer, bbox_vertices_RTvariable, RT_BUFFER_INPUT, RT_FORMAT_FLOAT3, 2 );
1652
-
1653 //Bounding Box
-
1654 addBuffer( "bbox_UUID", bbox_UUID_RTbuffer, bbox_UUID_RTvariable, RT_BUFFER_INPUT, RT_FORMAT_UNSIGNED_INT, 1 );
-
1655 addBuffer( "bbox_vertices", bbox_vertices_RTbuffer, bbox_vertices_RTvariable, RT_BUFFER_INPUT, RT_FORMAT_FLOAT3, 2 );
-
1656
-
1657 RT_CHECK_ERROR( rtContextDeclareVariable( OptiX_Context, "periodic_flag", &periodic_flag_RTvariable ) );
-
1658 RT_CHECK_ERROR( rtVariableSet2f( periodic_flag_RTvariable, 0.f, 0.f ));
-
1659
-
1660 //Texture mask data
-
1661 RT_CHECK_ERROR( rtBufferCreate( OptiX_Context, RT_BUFFER_INPUT, &maskdata_RTbuffer ) );
-
1662 RT_CHECK_ERROR( rtBufferSetFormat( maskdata_RTbuffer, RT_FORMAT_BYTE ) );
-
1663 RT_CHECK_ERROR( rtContextDeclareVariable( OptiX_Context, "maskdata", &maskdata_RTvariable ) );
-
1664 RT_CHECK_ERROR( rtVariableSetObject( maskdata_RTvariable, maskdata_RTbuffer ) );
-
1665 std::vector<std::vector<std::vector<bool> > > dummydata;
-
1666 initializeBuffer3D( maskdata_RTbuffer, dummydata );
-
1667
-
1668 //Texture mask size
-
1669 addBuffer( "masksize", masksize_RTbuffer, masksize_RTvariable, RT_BUFFER_INPUT, RT_FORMAT_INT2, 1 );
-
1670
-
1671 //Texture mask ID
-
1672 addBuffer( "maskID", maskID_RTbuffer, maskID_RTvariable, RT_BUFFER_INPUT, RT_FORMAT_INT, 1 );
-
1673
-
1674 //Texture u,v data
-
1675 addBuffer( "uvdata", uvdata_RTbuffer, uvdata_RTvariable, RT_BUFFER_INPUT, RT_FORMAT_FLOAT2, 2 );
-
1676
-
1677 //Texture u,v ID
-
1678 addBuffer( "uvID", uvID_RTbuffer, uvID_RTvariable, RT_BUFFER_INPUT, RT_FORMAT_INT, 1 );
-
1679
-
1680 // Radiation Camera Variables
-
1681 RT_CHECK_ERROR( rtContextDeclareVariable( OptiX_Context, "camera_position", &camera_position_RTvariable ) );
-
1682 RT_CHECK_ERROR( rtVariableSet3f( camera_position_RTvariable, 0.f, 0.f, 0.f ));
-
1683 RT_CHECK_ERROR( rtContextDeclareVariable( OptiX_Context, "camera_direction", &camera_direction_RTvariable ) );
-
1684 RT_CHECK_ERROR( rtVariableSet2f( camera_direction_RTvariable, 0.f, 0.f ));
-
1685 RT_CHECK_ERROR( rtContextDeclareVariable( OptiX_Context, "camera_lens_diameter", &camera_lens_diameter_RTvariable ) );
-
1686 RT_CHECK_ERROR( rtVariableSet1f( camera_lens_diameter_RTvariable, 0.f ));
-
1687 RT_CHECK_ERROR( rtContextDeclareVariable( OptiX_Context, "FOV_aspect_ratio", &FOV_aspect_RTvariable ) );
-
1688 RT_CHECK_ERROR( rtVariableSet1f( FOV_aspect_RTvariable, 1.f ));
-
1689 RT_CHECK_ERROR( rtContextDeclareVariable( OptiX_Context, "camera_focal_length", &camera_focal_length_RTvariable ) );
-
1690 RT_CHECK_ERROR( rtVariableSet1f( camera_focal_length_RTvariable, 0.f ));
-
1691 RT_CHECK_ERROR( rtContextDeclareVariable( OptiX_Context, "camera_viewplane_length", &camera_viewplane_length_RTvariable ) );
-
1692 RT_CHECK_ERROR( rtVariableSet1f( camera_viewplane_length_RTvariable, 0.f ));
-
1693 RT_CHECK_ERROR( rtContextDeclareVariable( OptiX_Context, "Ncameras", &Ncameras_RTvariable ) );
-
1694 RT_CHECK_ERROR( rtVariableSet1ui( Ncameras_RTvariable, 0 ));
-
1695 RT_CHECK_ERROR( rtContextDeclareVariable( OptiX_Context, "camera_ID", &camera_ID_RTvariable ) );
-
1696 RT_CHECK_ERROR( rtVariableSet1ui( camera_ID_RTvariable, 0 ));
+
1653 RT_CHECK_ERROR( rtContextDeclareVariable( OptiX_Context, "periodic_flag", &periodic_flag_RTvariable ) );
+
1654 RT_CHECK_ERROR( rtVariableSet2f( periodic_flag_RTvariable, 0.f, 0.f ));
+
1655
+
1656 //Texture mask data
+
1657 RT_CHECK_ERROR( rtBufferCreate( OptiX_Context, RT_BUFFER_INPUT, &maskdata_RTbuffer ) );
+
1658 RT_CHECK_ERROR( rtBufferSetFormat( maskdata_RTbuffer, RT_FORMAT_BYTE ) );
+
1659 RT_CHECK_ERROR( rtContextDeclareVariable( OptiX_Context, "maskdata", &maskdata_RTvariable ) );
+
1660 RT_CHECK_ERROR( rtVariableSetObject( maskdata_RTvariable, maskdata_RTbuffer ) );
+
1661 std::vector<std::vector<std::vector<bool> > > dummydata;
+
1662 initializeBuffer3D( maskdata_RTbuffer, dummydata );
+
1663
+
1664 //Texture mask size
+
1665 addBuffer( "masksize", masksize_RTbuffer, masksize_RTvariable, RT_BUFFER_INPUT, RT_FORMAT_INT2, 1 );
+
1666
+
1667 //Texture mask ID
+
1668 addBuffer( "maskID", maskID_RTbuffer, maskID_RTvariable, RT_BUFFER_INPUT, RT_FORMAT_INT, 1 );
+
1669
+
1670 //Texture u,v data
+
1671 addBuffer( "uvdata", uvdata_RTbuffer, uvdata_RTvariable, RT_BUFFER_INPUT, RT_FORMAT_FLOAT2, 2 );
+
1672
+
1673 //Texture u,v ID
+
1674 addBuffer( "uvID", uvID_RTbuffer, uvID_RTvariable, RT_BUFFER_INPUT, RT_FORMAT_INT, 1 );
+
1675
+
1676 // Radiation Camera Variables
+
1677 RT_CHECK_ERROR( rtContextDeclareVariable( OptiX_Context, "camera_position", &camera_position_RTvariable ) );
+
1678 RT_CHECK_ERROR( rtVariableSet3f( camera_position_RTvariable, 0.f, 0.f, 0.f ));
+
1679 RT_CHECK_ERROR( rtContextDeclareVariable( OptiX_Context, "camera_direction", &camera_direction_RTvariable ) );
+
1680 RT_CHECK_ERROR( rtVariableSet2f( camera_direction_RTvariable, 0.f, 0.f ));
+
1681 RT_CHECK_ERROR( rtContextDeclareVariable( OptiX_Context, "camera_lens_diameter", &camera_lens_diameter_RTvariable ) );
+
1682 RT_CHECK_ERROR( rtVariableSet1f( camera_lens_diameter_RTvariable, 0.f ));
+
1683 RT_CHECK_ERROR( rtContextDeclareVariable( OptiX_Context, "FOV_aspect_ratio", &FOV_aspect_RTvariable ) );
+
1684 RT_CHECK_ERROR( rtVariableSet1f( FOV_aspect_RTvariable, 1.f ));
+
1685 RT_CHECK_ERROR( rtContextDeclareVariable( OptiX_Context, "camera_focal_length", &camera_focal_length_RTvariable ) );
+
1686 RT_CHECK_ERROR( rtVariableSet1f( camera_focal_length_RTvariable, 0.f ));
+
1687 RT_CHECK_ERROR( rtContextDeclareVariable( OptiX_Context, "camera_viewplane_length", &camera_viewplane_length_RTvariable ) );
+
1688 RT_CHECK_ERROR( rtVariableSet1f( camera_viewplane_length_RTvariable, 0.f ));
+
1689 RT_CHECK_ERROR( rtContextDeclareVariable( OptiX_Context, "Ncameras", &Ncameras_RTvariable ) );
+
1690 RT_CHECK_ERROR( rtVariableSet1ui( Ncameras_RTvariable, 0 ));
+
1691 RT_CHECK_ERROR( rtContextDeclareVariable( OptiX_Context, "camera_ID", &camera_ID_RTvariable ) );
+
1692 RT_CHECK_ERROR( rtVariableSet1ui( camera_ID_RTvariable, 0 ));
+
1693
+
1694 // primitive scattering buffers (cameras)
+
1695 addBuffer( "scatter_buff_top_cam", scatter_buff_top_cam_RTbuffer, scatter_buff_top_cam_RTvariable, RT_BUFFER_INPUT_OUTPUT, RT_FORMAT_FLOAT, 1 );
+
1696 addBuffer( "scatter_buff_bottom_cam", scatter_buff_bottom_cam_RTbuffer, scatter_buff_bottom_cam_RTvariable, RT_BUFFER_INPUT_OUTPUT, RT_FORMAT_FLOAT, 1 );
1697
-
1698 // primitive scattering buffers (cameras)
-
1699 addBuffer( "scatter_buff_top_cam", scatter_buff_top_cam_RTbuffer, scatter_buff_top_cam_RTvariable, RT_BUFFER_INPUT_OUTPUT, RT_FORMAT_FLOAT, 1 );
-
1700 addBuffer( "scatter_buff_bottom_cam", scatter_buff_bottom_cam_RTbuffer, scatter_buff_bottom_cam_RTvariable, RT_BUFFER_INPUT_OUTPUT, RT_FORMAT_FLOAT, 1 );
-
1701
-
1702 /* Hit Programs */
-
1703 RTprogram closest_hit_direct;
-
1704 RTprogram closest_hit_diffuse;
-
1705 RTprogram closest_hit_camera;
-
1706 RTprogram closest_hit_pixel_label;
-
1707 RT_CHECK_ERROR( rtProgramCreateFromPTXFile( OptiX_Context, "plugins/radiation/cuda_compile_ptx_generated_rayHit.cu.ptx", "closest_hit_direct", &closest_hit_direct ) );
-
1708 RT_CHECK_ERROR( rtProgramCreateFromPTXFile( OptiX_Context, "plugins/radiation/cuda_compile_ptx_generated_rayHit.cu.ptx", "closest_hit_diffuse", &closest_hit_diffuse ) );
-
1709 RT_CHECK_ERROR( rtProgramCreateFromPTXFile( OptiX_Context, "plugins/radiation/cuda_compile_ptx_generated_rayHit.cu.ptx", "closest_hit_camera", &closest_hit_camera ) );
-
1710 RT_CHECK_ERROR( rtProgramCreateFromPTXFile( OptiX_Context, "plugins/radiation/cuda_compile_ptx_generated_rayHit.cu.ptx", "closest_hit_pixel_label", &closest_hit_pixel_label ) );
-
1711
-
1712 /* Initialize Patch Geometry */
-
1713
-
1714 RTprogram patch_intersection_program;
-
1715 RTprogram patch_bounding_box_program;
-
1716
-
1717 RT_CHECK_ERROR( rtGeometryCreate( OptiX_Context, &patch ) );
-
1718
-
1719 RT_CHECK_ERROR( rtProgramCreateFromPTXFile( OptiX_Context, "plugins/radiation/cuda_compile_ptx_generated_primitiveIntersection.cu.ptx", "rectangle_bounds", &patch_bounding_box_program ) );
-
1720 RT_CHECK_ERROR( rtGeometrySetBoundingBoxProgram( patch, patch_bounding_box_program ) );
-
1721 RT_CHECK_ERROR( rtProgramCreateFromPTXFile( OptiX_Context, "plugins/radiation/cuda_compile_ptx_generated_primitiveIntersection.cu.ptx", "rectangle_intersect", &patch_intersection_program ) );
-
1722 RT_CHECK_ERROR( rtGeometrySetIntersectionProgram( patch, patch_intersection_program ) );
+
1698 /* Hit Programs */
+
1699 RTprogram closest_hit_direct;
+
1700 RTprogram closest_hit_diffuse;
+
1701 RTprogram closest_hit_camera;
+
1702 RTprogram closest_hit_pixel_label;
+
1703 RT_CHECK_ERROR( rtProgramCreateFromPTXFile( OptiX_Context, "plugins/radiation/cuda_compile_ptx_generated_rayHit.cu.ptx", "closest_hit_direct", &closest_hit_direct ) );
+
1704 RT_CHECK_ERROR( rtProgramCreateFromPTXFile( OptiX_Context, "plugins/radiation/cuda_compile_ptx_generated_rayHit.cu.ptx", "closest_hit_diffuse", &closest_hit_diffuse ) );
+
1705 RT_CHECK_ERROR( rtProgramCreateFromPTXFile( OptiX_Context, "plugins/radiation/cuda_compile_ptx_generated_rayHit.cu.ptx", "closest_hit_camera", &closest_hit_camera ) );
+
1706 RT_CHECK_ERROR( rtProgramCreateFromPTXFile( OptiX_Context, "plugins/radiation/cuda_compile_ptx_generated_rayHit.cu.ptx", "closest_hit_pixel_label", &closest_hit_pixel_label ) );
+
1707
+
1708 /* Initialize Patch Geometry */
+
1709
+
1710 RTprogram patch_intersection_program;
+
1711 RTprogram patch_bounding_box_program;
+
1712
+
1713 RT_CHECK_ERROR( rtGeometryCreate( OptiX_Context, &patch ) );
+
1714
+
1715 RT_CHECK_ERROR( rtProgramCreateFromPTXFile( OptiX_Context, "plugins/radiation/cuda_compile_ptx_generated_primitiveIntersection.cu.ptx", "rectangle_bounds", &patch_bounding_box_program ) );
+
1716 RT_CHECK_ERROR( rtGeometrySetBoundingBoxProgram( patch, patch_bounding_box_program ) );
+
1717 RT_CHECK_ERROR( rtProgramCreateFromPTXFile( OptiX_Context, "plugins/radiation/cuda_compile_ptx_generated_primitiveIntersection.cu.ptx", "rectangle_intersect", &patch_intersection_program ) );
+
1718 RT_CHECK_ERROR( rtGeometrySetIntersectionProgram( patch, patch_intersection_program ) );
+
1719
+
1720 /* Create Patch Material */
+
1721
+
1722 RT_CHECK_ERROR( rtMaterialCreate( OptiX_Context, &patch_material ) );
1723
-
1724 /* Create Patch Material */
-
1725
-
1726 RT_CHECK_ERROR( rtMaterialCreate( OptiX_Context, &patch_material ) );
-
1727
-
1728 RT_CHECK_ERROR( rtMaterialSetClosestHitProgram( patch_material, RAYTYPE_DIRECT, closest_hit_direct ) );
-
1729 RT_CHECK_ERROR( rtMaterialSetClosestHitProgram( patch_material, RAYTYPE_DIFFUSE, closest_hit_diffuse ) );
-
1730 RT_CHECK_ERROR( rtMaterialSetClosestHitProgram( patch_material, RAYTYPE_CAMERA, closest_hit_camera ) );
-
1731 RT_CHECK_ERROR( rtMaterialSetClosestHitProgram( patch_material, RAYTYPE_PIXEL_LABEL, closest_hit_pixel_label ) );
-
1732
-
1733 /* Initialize Triangle Geometry */
-
1734
-
1735 RTprogram triangle_intersection_program;
-
1736 RTprogram triangle_bounding_box_program;
-
1737
-
1738 RT_CHECK_ERROR( rtGeometryCreate( OptiX_Context, &triangle ) );
-
1739
-
1740 RT_CHECK_ERROR( rtProgramCreateFromPTXFile( OptiX_Context, "plugins/radiation/cuda_compile_ptx_generated_primitiveIntersection.cu.ptx", "triangle_bounds", &triangle_bounding_box_program ) );
-
1741 RT_CHECK_ERROR( rtGeometrySetBoundingBoxProgram( triangle, triangle_bounding_box_program ) );
-
1742 RT_CHECK_ERROR( rtProgramCreateFromPTXFile( OptiX_Context, "plugins/radiation/cuda_compile_ptx_generated_primitiveIntersection.cu.ptx", "triangle_intersect", &triangle_intersection_program ) );
-
1743 RT_CHECK_ERROR( rtGeometrySetIntersectionProgram( triangle, triangle_intersection_program ) );
+
1724 RT_CHECK_ERROR( rtMaterialSetClosestHitProgram( patch_material, RAYTYPE_DIRECT, closest_hit_direct ) );
+
1725 RT_CHECK_ERROR( rtMaterialSetClosestHitProgram( patch_material, RAYTYPE_DIFFUSE, closest_hit_diffuse ) );
+
1726 RT_CHECK_ERROR( rtMaterialSetClosestHitProgram( patch_material, RAYTYPE_CAMERA, closest_hit_camera ) );
+
1727 RT_CHECK_ERROR( rtMaterialSetClosestHitProgram( patch_material, RAYTYPE_PIXEL_LABEL, closest_hit_pixel_label ) );
+
1728
+
1729 /* Initialize Triangle Geometry */
+
1730
+
1731 RTprogram triangle_intersection_program;
+
1732 RTprogram triangle_bounding_box_program;
+
1733
+
1734 RT_CHECK_ERROR( rtGeometryCreate( OptiX_Context, &triangle ) );
+
1735
+
1736 RT_CHECK_ERROR( rtProgramCreateFromPTXFile( OptiX_Context, "plugins/radiation/cuda_compile_ptx_generated_primitiveIntersection.cu.ptx", "triangle_bounds", &triangle_bounding_box_program ) );
+
1737 RT_CHECK_ERROR( rtGeometrySetBoundingBoxProgram( triangle, triangle_bounding_box_program ) );
+
1738 RT_CHECK_ERROR( rtProgramCreateFromPTXFile( OptiX_Context, "plugins/radiation/cuda_compile_ptx_generated_primitiveIntersection.cu.ptx", "triangle_intersect", &triangle_intersection_program ) );
+
1739 RT_CHECK_ERROR( rtGeometrySetIntersectionProgram( triangle, triangle_intersection_program ) );
+
1740
+
1741 /* Create Triangle Material */
+
1742
+
1743 RT_CHECK_ERROR( rtMaterialCreate( OptiX_Context, &triangle_material ) );
1744
-
1745 /* Create Triangle Material */
-
1746
-
1747 RT_CHECK_ERROR( rtMaterialCreate( OptiX_Context, &triangle_material ) );
-
1748
-
1749 RT_CHECK_ERROR( rtMaterialSetClosestHitProgram( triangle_material, RAYTYPE_DIRECT, closest_hit_direct ) );
-
1750 RT_CHECK_ERROR( rtMaterialSetClosestHitProgram( triangle_material, RAYTYPE_DIFFUSE, closest_hit_diffuse ) );
-
1751 RT_CHECK_ERROR( rtMaterialSetClosestHitProgram( triangle_material, RAYTYPE_CAMERA, closest_hit_camera ) );
-
1752 RT_CHECK_ERROR( rtMaterialSetClosestHitProgram( triangle_material, RAYTYPE_PIXEL_LABEL, closest_hit_pixel_label ) );
-
1753
-
1754 /* Initialize Disk Geometry */
-
1755
-
1756 RTprogram disk_intersection_program;
-
1757 RTprogram disk_bounding_box_program;
-
1758
-
1759 RT_CHECK_ERROR( rtGeometryCreate( OptiX_Context, &disk ) );
-
1760
-
1761 RT_CHECK_ERROR( rtProgramCreateFromPTXFile( OptiX_Context, "plugins/radiation/cuda_compile_ptx_generated_primitiveIntersection.cu.ptx", "disk_bounds", &disk_bounding_box_program ) );
-
1762 RT_CHECK_ERROR( rtGeometrySetBoundingBoxProgram( disk, disk_bounding_box_program ) );
-
1763 RT_CHECK_ERROR( rtProgramCreateFromPTXFile( OptiX_Context, "plugins/radiation/cuda_compile_ptx_generated_primitiveIntersection.cu.ptx", "disk_intersect", &disk_intersection_program ) );
-
1764 RT_CHECK_ERROR( rtGeometrySetIntersectionProgram( disk, disk_intersection_program ) );
+
1745 RT_CHECK_ERROR( rtMaterialSetClosestHitProgram( triangle_material, RAYTYPE_DIRECT, closest_hit_direct ) );
+
1746 RT_CHECK_ERROR( rtMaterialSetClosestHitProgram( triangle_material, RAYTYPE_DIFFUSE, closest_hit_diffuse ) );
+
1747 RT_CHECK_ERROR( rtMaterialSetClosestHitProgram( triangle_material, RAYTYPE_CAMERA, closest_hit_camera ) );
+
1748 RT_CHECK_ERROR( rtMaterialSetClosestHitProgram( triangle_material, RAYTYPE_PIXEL_LABEL, closest_hit_pixel_label ) );
+
1749
+
1750 /* Initialize Disk Geometry */
+
1751
+
1752 RTprogram disk_intersection_program;
+
1753 RTprogram disk_bounding_box_program;
+
1754
+
1755 RT_CHECK_ERROR( rtGeometryCreate( OptiX_Context, &disk ) );
+
1756
+
1757 RT_CHECK_ERROR( rtProgramCreateFromPTXFile( OptiX_Context, "plugins/radiation/cuda_compile_ptx_generated_primitiveIntersection.cu.ptx", "disk_bounds", &disk_bounding_box_program ) );
+
1758 RT_CHECK_ERROR( rtGeometrySetBoundingBoxProgram( disk, disk_bounding_box_program ) );
+
1759 RT_CHECK_ERROR( rtProgramCreateFromPTXFile( OptiX_Context, "plugins/radiation/cuda_compile_ptx_generated_primitiveIntersection.cu.ptx", "disk_intersect", &disk_intersection_program ) );
+
1760 RT_CHECK_ERROR( rtGeometrySetIntersectionProgram( disk, disk_intersection_program ) );
+
1761
+
1762 /* Create Disk Material */
+
1763
+
1764 RT_CHECK_ERROR( rtMaterialCreate( OptiX_Context, &disk_material ) );
1765
-
1766 /* Create Disk Material */
-
1767
-
1768 RT_CHECK_ERROR( rtMaterialCreate( OptiX_Context, &disk_material ) );
-
1769
-
1770 RT_CHECK_ERROR( rtMaterialSetClosestHitProgram( disk_material, RAYTYPE_DIRECT, closest_hit_direct ) );
-
1771 RT_CHECK_ERROR( rtMaterialSetClosestHitProgram( disk_material, RAYTYPE_DIFFUSE, closest_hit_diffuse ) );
-
1772 RT_CHECK_ERROR( rtMaterialSetClosestHitProgram( disk_material, RAYTYPE_CAMERA, closest_hit_camera ) );
-
1773 RT_CHECK_ERROR( rtMaterialSetClosestHitProgram( disk_material, RAYTYPE_PIXEL_LABEL, closest_hit_pixel_label ) );
-
1774
-
1775 /* Initialize Tile Geometry */
-
1776
-
1777 RTprogram tile_intersection_program;
-
1778 RTprogram tile_bounding_box_program;
-
1779
-
1780 RT_CHECK_ERROR( rtGeometryCreate( OptiX_Context, &tile ) );
-
1781
-
1782 RT_CHECK_ERROR( rtProgramCreateFromPTXFile( OptiX_Context, "plugins/radiation/cuda_compile_ptx_generated_primitiveIntersection.cu.ptx", "tile_bounds", &tile_bounding_box_program ) );
-
1783 RT_CHECK_ERROR( rtGeometrySetBoundingBoxProgram( tile, tile_bounding_box_program ) );
-
1784 RT_CHECK_ERROR( rtProgramCreateFromPTXFile( OptiX_Context, "plugins/radiation/cuda_compile_ptx_generated_primitiveIntersection.cu.ptx", "tile_intersect", &tile_intersection_program ) );
-
1785 RT_CHECK_ERROR( rtGeometrySetIntersectionProgram( tile, tile_intersection_program ) );
+
1766 RT_CHECK_ERROR( rtMaterialSetClosestHitProgram( disk_material, RAYTYPE_DIRECT, closest_hit_direct ) );
+
1767 RT_CHECK_ERROR( rtMaterialSetClosestHitProgram( disk_material, RAYTYPE_DIFFUSE, closest_hit_diffuse ) );
+
1768 RT_CHECK_ERROR( rtMaterialSetClosestHitProgram( disk_material, RAYTYPE_CAMERA, closest_hit_camera ) );
+
1769 RT_CHECK_ERROR( rtMaterialSetClosestHitProgram( disk_material, RAYTYPE_PIXEL_LABEL, closest_hit_pixel_label ) );
+
1770
+
1771 /* Initialize Tile Geometry */
+
1772
+
1773 RTprogram tile_intersection_program;
+
1774 RTprogram tile_bounding_box_program;
+
1775
+
1776 RT_CHECK_ERROR( rtGeometryCreate( OptiX_Context, &tile ) );
+
1777
+
1778 RT_CHECK_ERROR( rtProgramCreateFromPTXFile( OptiX_Context, "plugins/radiation/cuda_compile_ptx_generated_primitiveIntersection.cu.ptx", "tile_bounds", &tile_bounding_box_program ) );
+
1779 RT_CHECK_ERROR( rtGeometrySetBoundingBoxProgram( tile, tile_bounding_box_program ) );
+
1780 RT_CHECK_ERROR( rtProgramCreateFromPTXFile( OptiX_Context, "plugins/radiation/cuda_compile_ptx_generated_primitiveIntersection.cu.ptx", "tile_intersect", &tile_intersection_program ) );
+
1781 RT_CHECK_ERROR( rtGeometrySetIntersectionProgram( tile, tile_intersection_program ) );
+
1782
+
1783 /* Create Tile Material */
+
1784
+
1785 RT_CHECK_ERROR( rtMaterialCreate( OptiX_Context, &tile_material ) );
1786
-
1787 /* Create Tile Material */
-
1788
-
1789 RT_CHECK_ERROR( rtMaterialCreate( OptiX_Context, &tile_material ) );
-
1790
-
1791 RT_CHECK_ERROR( rtMaterialSetClosestHitProgram( tile_material, RAYTYPE_DIRECT, closest_hit_direct ) );
-
1792 RT_CHECK_ERROR( rtMaterialSetClosestHitProgram( tile_material, RAYTYPE_DIFFUSE, closest_hit_diffuse ) );
-
1793 RT_CHECK_ERROR( rtMaterialSetClosestHitProgram( tile_material, RAYTYPE_CAMERA, closest_hit_camera) );
-
1794 RT_CHECK_ERROR( rtMaterialSetClosestHitProgram( tile_material, RAYTYPE_PIXEL_LABEL, closest_hit_pixel_label ) );
-
1795
-
1796 /* Initialize Voxel Geometry */
-
1797
-
1798 RTprogram voxel_intersection_program;
-
1799 RTprogram voxel_bounding_box_program;
-
1800
-
1801 RT_CHECK_ERROR( rtGeometryCreate( OptiX_Context, &voxel ) );
-
1802
-
1803 RT_CHECK_ERROR( rtProgramCreateFromPTXFile( OptiX_Context, "plugins/radiation/cuda_compile_ptx_generated_primitiveIntersection.cu.ptx", "voxel_bounds", &voxel_bounding_box_program ) );
-
1804 RT_CHECK_ERROR( rtGeometrySetBoundingBoxProgram( voxel, voxel_bounding_box_program ) );
-
1805 RT_CHECK_ERROR( rtProgramCreateFromPTXFile( OptiX_Context, "plugins/radiation/cuda_compile_ptx_generated_primitiveIntersection.cu.ptx", "voxel_intersect", &voxel_intersection_program ) );
-
1806 RT_CHECK_ERROR( rtGeometrySetIntersectionProgram( voxel, voxel_intersection_program ) );
+
1787 RT_CHECK_ERROR( rtMaterialSetClosestHitProgram( tile_material, RAYTYPE_DIRECT, closest_hit_direct ) );
+
1788 RT_CHECK_ERROR( rtMaterialSetClosestHitProgram( tile_material, RAYTYPE_DIFFUSE, closest_hit_diffuse ) );
+
1789 RT_CHECK_ERROR( rtMaterialSetClosestHitProgram( tile_material, RAYTYPE_CAMERA, closest_hit_camera) );
+
1790 RT_CHECK_ERROR( rtMaterialSetClosestHitProgram( tile_material, RAYTYPE_PIXEL_LABEL, closest_hit_pixel_label ) );
+
1791
+
1792 /* Initialize Voxel Geometry */
+
1793
+
1794 RTprogram voxel_intersection_program;
+
1795 RTprogram voxel_bounding_box_program;
+
1796
+
1797 RT_CHECK_ERROR( rtGeometryCreate( OptiX_Context, &voxel ) );
+
1798
+
1799 RT_CHECK_ERROR( rtProgramCreateFromPTXFile( OptiX_Context, "plugins/radiation/cuda_compile_ptx_generated_primitiveIntersection.cu.ptx", "voxel_bounds", &voxel_bounding_box_program ) );
+
1800 RT_CHECK_ERROR( rtGeometrySetBoundingBoxProgram( voxel, voxel_bounding_box_program ) );
+
1801 RT_CHECK_ERROR( rtProgramCreateFromPTXFile( OptiX_Context, "plugins/radiation/cuda_compile_ptx_generated_primitiveIntersection.cu.ptx", "voxel_intersect", &voxel_intersection_program ) );
+
1802 RT_CHECK_ERROR( rtGeometrySetIntersectionProgram( voxel, voxel_intersection_program ) );
+
1803
+
1804 /* Create Voxel Material */
+
1805
+
1806 RT_CHECK_ERROR( rtMaterialCreate( OptiX_Context, &voxel_material ) );
1807
-
1808 /* Create Voxel Material */
-
1809
-
1810 RT_CHECK_ERROR( rtMaterialCreate( OptiX_Context, &voxel_material ) );
-
1811
-
1812 RT_CHECK_ERROR( rtMaterialSetClosestHitProgram( voxel_material, RAYTYPE_DIRECT, closest_hit_direct ) );
-
1813 RT_CHECK_ERROR( rtMaterialSetClosestHitProgram( voxel_material, RAYTYPE_DIFFUSE, closest_hit_diffuse ) );
-
1814 RT_CHECK_ERROR( rtMaterialSetClosestHitProgram( voxel_material, RAYTYPE_CAMERA, closest_hit_camera ) );
-
1815 RT_CHECK_ERROR( rtMaterialSetClosestHitProgram( voxel_material, RAYTYPE_PIXEL_LABEL, closest_hit_pixel_label ) );
-
1816
-
1817 /* Initialize Bounding Box Geometry */
-
1818
-
1819 RTprogram bbox_intersection_program;
-
1820 RTprogram bbox_bounding_box_program;
-
1821
-
1822 RT_CHECK_ERROR( rtGeometryCreate( OptiX_Context, &bbox ) );
-
1823
-
1824 RT_CHECK_ERROR( rtProgramCreateFromPTXFile( OptiX_Context, "plugins/radiation/cuda_compile_ptx_generated_primitiveIntersection.cu.ptx", "bbox_bounds", &bbox_bounding_box_program ) );
-
1825 RT_CHECK_ERROR( rtGeometrySetBoundingBoxProgram( bbox, bbox_bounding_box_program ) );
-
1826 RT_CHECK_ERROR( rtProgramCreateFromPTXFile( OptiX_Context, "plugins/radiation/cuda_compile_ptx_generated_primitiveIntersection.cu.ptx", "bbox_intersect", &bbox_intersection_program ) );
-
1827 RT_CHECK_ERROR( rtGeometrySetIntersectionProgram( bbox, bbox_intersection_program ) );
+
1808 RT_CHECK_ERROR( rtMaterialSetClosestHitProgram( voxel_material, RAYTYPE_DIRECT, closest_hit_direct ) );
+
1809 RT_CHECK_ERROR( rtMaterialSetClosestHitProgram( voxel_material, RAYTYPE_DIFFUSE, closest_hit_diffuse ) );
+
1810 RT_CHECK_ERROR( rtMaterialSetClosestHitProgram( voxel_material, RAYTYPE_CAMERA, closest_hit_camera ) );
+
1811 RT_CHECK_ERROR( rtMaterialSetClosestHitProgram( voxel_material, RAYTYPE_PIXEL_LABEL, closest_hit_pixel_label ) );
+
1812
+
1813 /* Initialize Bounding Box Geometry */
+
1814
+
1815 RTprogram bbox_intersection_program;
+
1816 RTprogram bbox_bounding_box_program;
+
1817
+
1818 RT_CHECK_ERROR( rtGeometryCreate( OptiX_Context, &bbox ) );
+
1819
+
1820 RT_CHECK_ERROR( rtProgramCreateFromPTXFile( OptiX_Context, "plugins/radiation/cuda_compile_ptx_generated_primitiveIntersection.cu.ptx", "bbox_bounds", &bbox_bounding_box_program ) );
+
1821 RT_CHECK_ERROR( rtGeometrySetBoundingBoxProgram( bbox, bbox_bounding_box_program ) );
+
1822 RT_CHECK_ERROR( rtProgramCreateFromPTXFile( OptiX_Context, "plugins/radiation/cuda_compile_ptx_generated_primitiveIntersection.cu.ptx", "bbox_intersect", &bbox_intersection_program ) );
+
1823 RT_CHECK_ERROR( rtGeometrySetIntersectionProgram( bbox, bbox_intersection_program ) );
+
1824
+
1825 /* Create Bounding Box Material */
+
1826
+
1827 RT_CHECK_ERROR( rtMaterialCreate( OptiX_Context, &bbox_material ) );
1828
-
1829 /* Create Bounding Box Material */
-
1830
-
1831 RT_CHECK_ERROR( rtMaterialCreate( OptiX_Context, &bbox_material ) );
-
1832
-
1833 RT_CHECK_ERROR( rtMaterialSetClosestHitProgram( bbox_material, RAYTYPE_DIRECT, closest_hit_direct ) );
-
1834 RT_CHECK_ERROR( rtMaterialSetClosestHitProgram( bbox_material, RAYTYPE_DIFFUSE, closest_hit_diffuse ) );
-
1835 RT_CHECK_ERROR( rtMaterialSetClosestHitProgram( bbox_material, RAYTYPE_CAMERA, closest_hit_camera ) );
-
1836 RT_CHECK_ERROR( rtMaterialSetClosestHitProgram( bbox_material, RAYTYPE_PIXEL_LABEL, closest_hit_pixel_label ) );
-
1837
-
1838 /* Miss Program */
-
1839 RTprogram miss_program_direct;
-
1840 RTprogram miss_program_diffuse;
-
1841 RTprogram miss_program_camera;
-
1842 RTprogram miss_program_pixel_label;
-
1843 RT_CHECK_ERROR( rtProgramCreateFromPTXFile( OptiX_Context, "plugins/radiation/cuda_compile_ptx_generated_rayHit.cu.ptx", "miss_direct", &miss_program_direct ) );
-
1844 RT_CHECK_ERROR( rtContextSetMissProgram( OptiX_Context, RAYTYPE_DIRECT, miss_program_direct ) );
-
1845 RT_CHECK_ERROR( rtProgramCreateFromPTXFile( OptiX_Context, "plugins/radiation/cuda_compile_ptx_generated_rayHit.cu.ptx", "miss_diffuse", &miss_program_diffuse ) );
-
1846 RT_CHECK_ERROR( rtContextSetMissProgram( OptiX_Context, RAYTYPE_DIFFUSE, miss_program_diffuse ) );
-
1847 RT_CHECK_ERROR( rtProgramCreateFromPTXFile( OptiX_Context, "plugins/radiation/cuda_compile_ptx_generated_rayHit.cu.ptx", "miss_camera", &miss_program_camera ) );
-
1848 RT_CHECK_ERROR( rtContextSetMissProgram( OptiX_Context, RAYTYPE_CAMERA, miss_program_camera ) );
-
1849 RT_CHECK_ERROR( rtProgramCreateFromPTXFile( OptiX_Context, "plugins/radiation/cuda_compile_ptx_generated_rayHit.cu.ptx", "miss_pixel_label", &miss_program_pixel_label ) );
-
1850 RT_CHECK_ERROR( rtContextSetMissProgram( OptiX_Context, RAYTYPE_PIXEL_LABEL, miss_program_pixel_label ) );
+
1829 RT_CHECK_ERROR( rtMaterialSetClosestHitProgram( bbox_material, RAYTYPE_DIRECT, closest_hit_direct ) );
+
1830 RT_CHECK_ERROR( rtMaterialSetClosestHitProgram( bbox_material, RAYTYPE_DIFFUSE, closest_hit_diffuse ) );
+
1831 RT_CHECK_ERROR( rtMaterialSetClosestHitProgram( bbox_material, RAYTYPE_CAMERA, closest_hit_camera ) );
+
1832 RT_CHECK_ERROR( rtMaterialSetClosestHitProgram( bbox_material, RAYTYPE_PIXEL_LABEL, closest_hit_pixel_label ) );
+
1833
+
1834 /* Miss Program */
+
1835 RTprogram miss_program_direct;
+
1836 RTprogram miss_program_diffuse;
+
1837 RTprogram miss_program_camera;
+
1838 RTprogram miss_program_pixel_label;
+
1839 RT_CHECK_ERROR( rtProgramCreateFromPTXFile( OptiX_Context, "plugins/radiation/cuda_compile_ptx_generated_rayHit.cu.ptx", "miss_direct", &miss_program_direct ) );
+
1840 RT_CHECK_ERROR( rtContextSetMissProgram( OptiX_Context, RAYTYPE_DIRECT, miss_program_direct ) );
+
1841 RT_CHECK_ERROR( rtProgramCreateFromPTXFile( OptiX_Context, "plugins/radiation/cuda_compile_ptx_generated_rayHit.cu.ptx", "miss_diffuse", &miss_program_diffuse ) );
+
1842 RT_CHECK_ERROR( rtContextSetMissProgram( OptiX_Context, RAYTYPE_DIFFUSE, miss_program_diffuse ) );
+
1843 RT_CHECK_ERROR( rtProgramCreateFromPTXFile( OptiX_Context, "plugins/radiation/cuda_compile_ptx_generated_rayHit.cu.ptx", "miss_camera", &miss_program_camera ) );
+
1844 RT_CHECK_ERROR( rtContextSetMissProgram( OptiX_Context, RAYTYPE_CAMERA, miss_program_camera ) );
+
1845 RT_CHECK_ERROR( rtProgramCreateFromPTXFile( OptiX_Context, "plugins/radiation/cuda_compile_ptx_generated_rayHit.cu.ptx", "miss_pixel_label", &miss_program_pixel_label ) );
+
1846 RT_CHECK_ERROR( rtContextSetMissProgram( OptiX_Context, RAYTYPE_PIXEL_LABEL, miss_program_pixel_label ) );
+
1847
+
1848 /* Create OptiX Geometry Structures */
+
1849
+
1850 RTtransform transform;
1851
-
1852 /* Create OptiX Geometry Structures */
+
1852 RTgeometrygroup geometry_group;
1853
-
1854 RTtransform transform;
-
1855
-
1856 RTgeometrygroup geometry_group;
-
1857
-
1858 RTgeometryinstance patch_instance;
-
1859 RTgeometryinstance triangle_instance;
-
1860 RTgeometryinstance disk_instance;
-
1861 RTgeometryinstance tile_instance;
-
1862 RTgeometryinstance voxel_instance;
-
1863 RTgeometryinstance bbox_instance;
+
1854 RTgeometryinstance patch_instance;
+
1855 RTgeometryinstance triangle_instance;
+
1856 RTgeometryinstance disk_instance;
+
1857 RTgeometryinstance tile_instance;
+
1858 RTgeometryinstance voxel_instance;
+
1859 RTgeometryinstance bbox_instance;
+
1860
+
1861 /* Create top level group and associated (dummy) acceleration */
+
1862 RT_CHECK_ERROR( rtGroupCreate( OptiX_Context, &top_level_group ) );
+
1863 RT_CHECK_ERROR( rtGroupSetChildCount( top_level_group, 1 ) );
1864
-
1865 /* Create top level group and associated (dummy) acceleration */
-
1866 RT_CHECK_ERROR( rtGroupCreate( OptiX_Context, &top_level_group ) );
-
1867 RT_CHECK_ERROR( rtGroupSetChildCount( top_level_group, 1 ) );
-
1868
-
1869 RT_CHECK_ERROR( rtAccelerationCreate( OptiX_Context, &top_level_acceleration ) );
-
1870 RT_CHECK_ERROR( rtAccelerationSetBuilder(top_level_acceleration,"NoAccel") );
-
1871 RT_CHECK_ERROR( rtAccelerationSetTraverser(top_level_acceleration,"NoAccel") );
-
1872 RT_CHECK_ERROR( rtGroupSetAcceleration( top_level_group, top_level_acceleration) );
-
1873
-
1874 /* mark acceleration as dirty */
-
1875 RT_CHECK_ERROR( rtAccelerationMarkDirty( top_level_acceleration ) );
-
1876
-
1877 /* Create transform node */
-
1878 RT_CHECK_ERROR( rtTransformCreate( OptiX_Context, &transform ) );
-
1879 float m[16];
-
1880 m[0] = 1.f; m[1] = 0; m[2] = 0; m[3] = 0;
-
1881 m[4] = 0.f; m[5] = 1.f; m[6] = 0; m[7] = 0;
-
1882 m[8] = 0.f; m[9] = 0; m[10] = 1.f; m[11] = 0;
-
1883 m[12] = 0.f; m[13] = 0; m[14] = 0; m[15] = 1.f;
-
1884 RT_CHECK_ERROR( rtTransformSetMatrix( transform, 0, m, nullptr ) );
-
1885 RT_CHECK_ERROR( rtGroupSetChild( top_level_group, 0, transform ) );
-
1886
-
1887 /* Create geometry group and associated acceleration*/
-
1888 RT_CHECK_ERROR( rtGeometryGroupCreate( OptiX_Context, &geometry_group ) );
-
1889 RT_CHECK_ERROR( rtGeometryGroupSetChildCount( geometry_group, 6 ) );
-
1890 RT_CHECK_ERROR( rtTransformSetChild( transform, geometry_group ) );
-
1891
-
1892 //create acceleration object for group and specify some build hints
-
1893 RT_CHECK_ERROR( rtAccelerationCreate(OptiX_Context,&geometry_acceleration) );
-
1894 RT_CHECK_ERROR( rtAccelerationSetBuilder(geometry_acceleration,"Trbvh") );
-
1895 RT_CHECK_ERROR( rtAccelerationSetTraverser(geometry_acceleration,"Bvh") );
-
1896 RT_CHECK_ERROR( rtGeometryGroupSetAcceleration( geometry_group, geometry_acceleration) );
-
1897 RT_CHECK_ERROR( rtAccelerationMarkDirty( geometry_acceleration ) );
-
1898
-
1899 /* Create geometry instances */
-
1900 //patches
-
1901 RT_CHECK_ERROR( rtGeometryInstanceCreate( OptiX_Context, &patch_instance ) );
-
1902 RT_CHECK_ERROR( rtGeometryInstanceSetGeometry( patch_instance, patch ) );
-
1903 RT_CHECK_ERROR( rtGeometryInstanceSetMaterialCount( patch_instance, 1 ) );
-
1904 RT_CHECK_ERROR( rtGeometryInstanceSetMaterial( patch_instance, 0, patch_material ) );
-
1905 RT_CHECK_ERROR( rtGeometryGroupSetChild( geometry_group, 0, patch_instance ) );
-
1906 //triangles
-
1907 RT_CHECK_ERROR( rtGeometryInstanceCreate( OptiX_Context, &triangle_instance ) );
-
1908 RT_CHECK_ERROR( rtGeometryInstanceSetGeometry( triangle_instance, triangle ) );
-
1909 RT_CHECK_ERROR( rtGeometryInstanceSetMaterialCount( triangle_instance, 1 ) );
-
1910 RT_CHECK_ERROR( rtGeometryInstanceSetMaterial( triangle_instance, 0, triangle_material ) );
-
1911 RT_CHECK_ERROR( rtGeometryGroupSetChild( geometry_group, 1, triangle_instance ) );
-
1912 //disks
-
1913 RT_CHECK_ERROR( rtGeometryInstanceCreate( OptiX_Context, &disk_instance ) );
-
1914 RT_CHECK_ERROR( rtGeometryInstanceSetGeometry( disk_instance, disk ) );
-
1915 RT_CHECK_ERROR( rtGeometryInstanceSetMaterialCount( disk_instance, 1 ) );
-
1916 RT_CHECK_ERROR( rtGeometryInstanceSetMaterial( disk_instance, 0, disk_material ) );
-
1917 RT_CHECK_ERROR( rtGeometryGroupSetChild( geometry_group, 2, disk_instance ) );
-
1918 //tiles
-
1919 RT_CHECK_ERROR( rtGeometryInstanceCreate( OptiX_Context, &tile_instance ) );
-
1920 RT_CHECK_ERROR( rtGeometryInstanceSetGeometry( tile_instance, tile ) );
-
1921 RT_CHECK_ERROR( rtGeometryInstanceSetMaterialCount( tile_instance, 1 ) );
-
1922 RT_CHECK_ERROR( rtGeometryInstanceSetMaterial( tile_instance, 0, tile_material ) );
-
1923 RT_CHECK_ERROR( rtGeometryGroupSetChild( geometry_group, 3, tile_instance ) );
-
1924 //voxels
-
1925 RT_CHECK_ERROR( rtGeometryInstanceCreate( OptiX_Context, &voxel_instance ) );
-
1926 RT_CHECK_ERROR( rtGeometryInstanceSetGeometry( voxel_instance, voxel ) );
-
1927 RT_CHECK_ERROR( rtGeometryInstanceSetMaterialCount( voxel_instance, 1 ) );
-
1928 RT_CHECK_ERROR( rtGeometryInstanceSetMaterial( voxel_instance, 0, voxel_material ) );
-
1929 RT_CHECK_ERROR( rtGeometryGroupSetChild( geometry_group, 4, voxel_instance ) );
-
1930
-
1931 //voxels
-
1932 RT_CHECK_ERROR( rtGeometryInstanceCreate( OptiX_Context, &bbox_instance ) );
-
1933 RT_CHECK_ERROR( rtGeometryInstanceSetGeometry( bbox_instance, bbox ) );
-
1934 RT_CHECK_ERROR( rtGeometryInstanceSetMaterialCount( bbox_instance, 1 ) );
-
1935 RT_CHECK_ERROR( rtGeometryInstanceSetMaterial( bbox_instance, 0, bbox_material ) );
-
1936 RT_CHECK_ERROR( rtGeometryGroupSetChild( geometry_group, 5, bbox_instance ) );
-
1937
-
1938 /* Set the top_object variable */
-
1939 //NOTE: Not sure exactly where this has to be set
-
1940 RT_CHECK_ERROR( rtContextDeclareVariable( OptiX_Context, "top_object", &top_object ) );
-
1941 RT_CHECK_ERROR( rtVariableSetObject( top_object, top_level_group ) );
+
1865 RT_CHECK_ERROR( rtAccelerationCreate( OptiX_Context, &top_level_acceleration ) );
+
1866 RT_CHECK_ERROR( rtAccelerationSetBuilder(top_level_acceleration,"NoAccel") );
+
1867 RT_CHECK_ERROR( rtAccelerationSetTraverser(top_level_acceleration,"NoAccel") );
+
1868 RT_CHECK_ERROR( rtGroupSetAcceleration( top_level_group, top_level_acceleration) );
+
1869
+
1870 /* mark acceleration as dirty */
+
1871 RT_CHECK_ERROR( rtAccelerationMarkDirty( top_level_acceleration ) );
+
1872
+
1873 /* Create transform node */
+
1874 RT_CHECK_ERROR( rtTransformCreate( OptiX_Context, &transform ) );
+
1875 float m[16];
+
1876 m[0] = 1.f; m[1] = 0; m[2] = 0; m[3] = 0;
+
1877 m[4] = 0.f; m[5] = 1.f; m[6] = 0; m[7] = 0;
+
1878 m[8] = 0.f; m[9] = 0; m[10] = 1.f; m[11] = 0;
+
1879 m[12] = 0.f; m[13] = 0; m[14] = 0; m[15] = 1.f;
+
1880 RT_CHECK_ERROR( rtTransformSetMatrix( transform, 0, m, nullptr ) );
+
1881 RT_CHECK_ERROR( rtGroupSetChild( top_level_group, 0, transform ) );
+
1882
+
1883 /* Create geometry group and associated acceleration*/
+
1884 RT_CHECK_ERROR( rtGeometryGroupCreate( OptiX_Context, &geometry_group ) );
+
1885 RT_CHECK_ERROR( rtGeometryGroupSetChildCount( geometry_group, 6 ) );
+
1886 RT_CHECK_ERROR( rtTransformSetChild( transform, geometry_group ) );
+
1887
+
1888 //create acceleration object for group and specify some build hints
+
1889 RT_CHECK_ERROR( rtAccelerationCreate(OptiX_Context,&geometry_acceleration) );
+
1890 RT_CHECK_ERROR( rtAccelerationSetBuilder(geometry_acceleration,"Trbvh") );
+
1891 RT_CHECK_ERROR( rtAccelerationSetTraverser(geometry_acceleration,"Bvh") );
+
1892 RT_CHECK_ERROR( rtGeometryGroupSetAcceleration( geometry_group, geometry_acceleration) );
+
1893 RT_CHECK_ERROR( rtAccelerationMarkDirty( geometry_acceleration ) );
+
1894
+
1895 /* Create geometry instances */
+
1896 //patches
+
1897 RT_CHECK_ERROR( rtGeometryInstanceCreate( OptiX_Context, &patch_instance ) );
+
1898 RT_CHECK_ERROR( rtGeometryInstanceSetGeometry( patch_instance, patch ) );
+
1899 RT_CHECK_ERROR( rtGeometryInstanceSetMaterialCount( patch_instance, 1 ) );
+
1900 RT_CHECK_ERROR( rtGeometryInstanceSetMaterial( patch_instance, 0, patch_material ) );
+
1901 RT_CHECK_ERROR( rtGeometryGroupSetChild( geometry_group, 0, patch_instance ) );
+
1902 //triangles
+
1903 RT_CHECK_ERROR( rtGeometryInstanceCreate( OptiX_Context, &triangle_instance ) );
+
1904 RT_CHECK_ERROR( rtGeometryInstanceSetGeometry( triangle_instance, triangle ) );
+
1905 RT_CHECK_ERROR( rtGeometryInstanceSetMaterialCount( triangle_instance, 1 ) );
+
1906 RT_CHECK_ERROR( rtGeometryInstanceSetMaterial( triangle_instance, 0, triangle_material ) );
+
1907 RT_CHECK_ERROR( rtGeometryGroupSetChild( geometry_group, 1, triangle_instance ) );
+
1908 //disks
+
1909 RT_CHECK_ERROR( rtGeometryInstanceCreate( OptiX_Context, &disk_instance ) );
+
1910 RT_CHECK_ERROR( rtGeometryInstanceSetGeometry( disk_instance, disk ) );
+
1911 RT_CHECK_ERROR( rtGeometryInstanceSetMaterialCount( disk_instance, 1 ) );
+
1912 RT_CHECK_ERROR( rtGeometryInstanceSetMaterial( disk_instance, 0, disk_material ) );
+
1913 RT_CHECK_ERROR( rtGeometryGroupSetChild( geometry_group, 2, disk_instance ) );
+
1914 //tiles
+
1915 RT_CHECK_ERROR( rtGeometryInstanceCreate( OptiX_Context, &tile_instance ) );
+
1916 RT_CHECK_ERROR( rtGeometryInstanceSetGeometry( tile_instance, tile ) );
+
1917 RT_CHECK_ERROR( rtGeometryInstanceSetMaterialCount( tile_instance, 1 ) );
+
1918 RT_CHECK_ERROR( rtGeometryInstanceSetMaterial( tile_instance, 0, tile_material ) );
+
1919 RT_CHECK_ERROR( rtGeometryGroupSetChild( geometry_group, 3, tile_instance ) );
+
1920 //voxels
+
1921 RT_CHECK_ERROR( rtGeometryInstanceCreate( OptiX_Context, &voxel_instance ) );
+
1922 RT_CHECK_ERROR( rtGeometryInstanceSetGeometry( voxel_instance, voxel ) );
+
1923 RT_CHECK_ERROR( rtGeometryInstanceSetMaterialCount( voxel_instance, 1 ) );
+
1924 RT_CHECK_ERROR( rtGeometryInstanceSetMaterial( voxel_instance, 0, voxel_material ) );
+
1925 RT_CHECK_ERROR( rtGeometryGroupSetChild( geometry_group, 4, voxel_instance ) );
+
1926
+
1927 //voxels
+
1928 RT_CHECK_ERROR( rtGeometryInstanceCreate( OptiX_Context, &bbox_instance ) );
+
1929 RT_CHECK_ERROR( rtGeometryInstanceSetGeometry( bbox_instance, bbox ) );
+
1930 RT_CHECK_ERROR( rtGeometryInstanceSetMaterialCount( bbox_instance, 1 ) );
+
1931 RT_CHECK_ERROR( rtGeometryInstanceSetMaterial( bbox_instance, 0, bbox_material ) );
+
1932 RT_CHECK_ERROR( rtGeometryGroupSetChild( geometry_group, 5, bbox_instance ) );
+
1933
+
1934 /* Set the top_object variable */
+
1935 //NOTE: Not sure exactly where this has to be set
+
1936 RT_CHECK_ERROR( rtContextDeclareVariable( OptiX_Context, "top_object", &top_object ) );
+
1937 RT_CHECK_ERROR( rtVariableSetObject( top_object, top_level_group ) );
+
1938
+
1939 //random number seed
+
1940 RT_CHECK_ERROR( rtContextDeclareVariable( OptiX_Context, "random_seed", &random_seed_RTvariable ) );
+
1941 RT_CHECK_ERROR( rtVariableSet1ui( random_seed_RTvariable, std::chrono::system_clock::now().time_since_epoch().count() ) );
1942
-
1943 //random number seed
-
1944 RT_CHECK_ERROR( rtContextDeclareVariable( OptiX_Context, "random_seed", &random_seed_RTvariable ) );
-
1945 RT_CHECK_ERROR( rtVariableSet1ui( random_seed_RTvariable, std::chrono::system_clock::now().time_since_epoch().count() ) );
+
1943 //launch offset
+
1944 RT_CHECK_ERROR( rtContextDeclareVariable( OptiX_Context, "launch_offset", &launch_offset_RTvariable ) );
+
1945 RT_CHECK_ERROR( rtVariableSet1ui( launch_offset_RTvariable, 0 ) );
1946
-
1947 //launch offset
-
1948 RT_CHECK_ERROR( rtContextDeclareVariable( OptiX_Context, "launch_offset", &launch_offset_RTvariable ) );
-
1949 RT_CHECK_ERROR( rtVariableSet1ui( launch_offset_RTvariable, 0 ) );
-
1950
-
1951 //maximum scattering depth
-
1952 RT_CHECK_ERROR( rtBufferCreate( OptiX_Context, RT_BUFFER_INPUT, &max_scatters_RTbuffer ) );
-
1953 RT_CHECK_ERROR( rtBufferSetFormat( max_scatters_RTbuffer, RT_FORMAT_UNSIGNED_INT ) );
-
1954 RT_CHECK_ERROR( rtContextDeclareVariable( OptiX_Context, "max_scatters", &max_scatters_RTvariable ) );
-
1955 RT_CHECK_ERROR( rtVariableSetObject( max_scatters_RTvariable, max_scatters_RTbuffer ) );
-
1956 zeroBuffer1D( max_scatters_RTbuffer, 1 );
-
1957
-
1958 // RTsize device_memory;
-
1959 // RT_CHECK_ERROR( rtContextGetAttribute( OptiX_Context, RT_CONTEXT_ATTRIBUTE_AVAILABLE_DEVICE_MEMORY, sizeof(RTsize), &device_memory ) );
-
1960
-
1961 // device_memory *= 1e-6;
-
1962 // if( device_memory < 1000 ){
-
1963 // printf("available device memory at end of OptiX initialization: %6.3f MB\n",device_memory);
-
1964 // }else{
-
1965 // printf("available device memory at end of OptiX initialization: %6.3f GB\n",device_memory*1e-3);
-
1966 // }
-
1967
+
1947 //maximum scattering depth
+
1948 RT_CHECK_ERROR( rtBufferCreate( OptiX_Context, RT_BUFFER_INPUT, &max_scatters_RTbuffer ) );
+
1949 RT_CHECK_ERROR( rtBufferSetFormat( max_scatters_RTbuffer, RT_FORMAT_UNSIGNED_INT ) );
+
1950 RT_CHECK_ERROR( rtContextDeclareVariable( OptiX_Context, "max_scatters", &max_scatters_RTvariable ) );
+
1951 RT_CHECK_ERROR( rtVariableSetObject( max_scatters_RTvariable, max_scatters_RTbuffer ) );
+
1952 zeroBuffer1D( max_scatters_RTbuffer, 1 );
+
1953
+
1954 // RTsize device_memory;
+
1955 // RT_CHECK_ERROR( rtContextGetAttribute( OptiX_Context, RT_CONTEXT_ATTRIBUTE_AVAILABLE_DEVICE_MEMORY, sizeof(RTsize), &device_memory ) );
+
1956
+
1957 // device_memory *= 1e-6;
+
1958 // if( device_memory < 1000 ){
+
1959 // printf("available device memory at end of OptiX initialization: %6.3f MB\n",device_memory);
+
1960 // }else{
+
1961 // printf("available device memory at end of OptiX initialization: %6.3f GB\n",device_memory*1e-3);
+
1962 // }
+
1963
+
1964}
+
1965
+
+
1966void RadiationModel::updateGeometry() {
+
1967 updateGeometry( context->getAllUUIDs() );
1968}
+
1969
-
1970void RadiationModel::updateGeometry() {
-
1971 updateGeometry( context->getAllUUIDs() );
-
1972}
-
-
1973
-
-
1974void RadiationModel::updateGeometry( const std::vector<uint>& UUIDs ){
+
1970void RadiationModel::updateGeometry( const std::vector<uint>& UUIDs ){
+
1971
+
1972 if( message_flag ){
+
1973 std::cout << "Updating geometry in radiation transport model..." << std::flush;
+
1974 }
1975
-
1976 if( message_flag ){
-
1977 std::cout << "Updating geometry in radiation transport model..." << std::flush;
+
1976 for ( auto &band : radiation_bands ) {
+
1977 band.second.radiativepropertiesinitialized = false;
1978 }
1979
-
1980 for ( auto &band : radiation_bands ) {
-
1981 band.second.radiativepropertiesinitialized = false;
-
1982 }
-
1983
-
1984 context_UUIDs = UUIDs;
-
1985
-
1986 for( int u=context_UUIDs.size()-1; u>=0; u-- ){
-
1987 float area = context->getPrimitiveArea(context_UUIDs.at(u));
-
1988 if( !context->doesPrimitiveExist( context_UUIDs.at(u) ) ){
-
1989 context_UUIDs.erase( context_UUIDs.begin()+u );
-
1990 }else if( area==0 || area!=area ){
-
1991 context_UUIDs.erase( context_UUIDs.begin()+u );
-
1992 }
-
1993 }
-
1994
-
1995 //--- Make Bounding Patches ---//
-
1996
-
1997 //determine domain bounding sphere
-
1998 float sphere_radius;
-
1999 vec3 sphere_center;
-
2000 context->getDomainBoundingSphere( sphere_center, sphere_radius );
-
2001
-
2002 rtVariableSet1f( bound_sphere_radius_RTvariable, sphere_radius );
-
2003 rtVariableSet3f( bound_sphere_center_RTvariable, sphere_center.x, sphere_center.y, sphere_center.z );
+
1980 context_UUIDs = UUIDs;
+
1981
+
1982 for( int u=context_UUIDs.size()-1; u>=0; u-- ){
+
1983 float area = context->getPrimitiveArea(context_UUIDs.at(u));
+
1984 if( !context->doesPrimitiveExist( context_UUIDs.at(u) ) ){
+
1985 context_UUIDs.erase( context_UUIDs.begin()+u );
+
1986 }else if( area==0 || area!=area ){
+
1987 context_UUIDs.erase( context_UUIDs.begin()+u );
+
1988 }
+
1989 }
+
1990
+
1991 //--- Make Bounding Patches ---//
+
1992
+
1993 //determine domain bounding sphere
+
1994 float sphere_radius;
+
1995 vec3 sphere_center;
+
1996 context->getDomainBoundingSphere( sphere_center, sphere_radius );
+
1997
+
1998 rtVariableSet1f( bound_sphere_radius_RTvariable, sphere_radius );
+
1999 rtVariableSet3f( bound_sphere_center_RTvariable, sphere_center.x, sphere_center.y, sphere_center.z );
+
2000
+
2001 //--- Populate Primitive Geometry Buffers ---//
+
2002
+
2003 size_t Nprimitives = context_UUIDs.size(); //Number of primitives
2004
-
2005 //--- Populate Primitive Geometry Buffers ---//
-
2006
-
2007 size_t Nprimitives = context_UUIDs.size(); //Number of primitives
-
2008
-
2009 //transformation matrix buffer - size=Nobjects
-
2010 std::vector<std::vector<float> > m_global;
-
2011
-
2012 //primitive type buffer - size=Nobjects
-
2013 std::vector<uint> ptype_global;
-
2014
-
2015 //primitive area buffer - size=Nobjects
-
2016 std::vector<float> area_global;
-
2017
-
2018 //primitive UUID buffers - total size of all combined is Nobjects
-
2019 std::vector<uint> patch_UUID;
-
2020 std::vector<uint> triangle_UUID;
-
2021 std::vector<uint> disk_UUID;
-
2022 std::vector<uint> tile_UUID;
-
2023 std::vector<uint> voxel_UUID;
-
2024
-
2025 //twosided flag buffer - size=Nobjects
-
2026 std::vector<char> twosided_flag_global;
-
2027
-
2028 //primitive geometry specification buffers
-
2029 std::vector<std::vector<optix::float3> > patch_vertices;
-
2030 std::vector<std::vector<optix::float3> > triangle_vertices;
-
2031 std::vector<std::vector<optix::float3> > disk_vertices;
-
2032 std::vector<std::vector<optix::float3> > tile_vertices;
-
2033 std::vector<std::vector<optix::float3> > voxel_vertices;
-
2034
-
2035 //number of patch subdivisions for each tile - size is same as tile_vertices
-
2036 std::vector<optix::int2> object_subdivisions;
-
2037
-
2038 std::vector<uint> objID_all = context->getAllObjectIDs();
+
2005 //transformation matrix buffer - size=Nobjects
+
2006 std::vector<std::vector<float> > m_global;
+
2007
+
2008 //primitive type buffer - size=Nobjects
+
2009 std::vector<uint> ptype_global;
+
2010
+
2011 //primitive area buffer - size=Nobjects
+
2012 std::vector<float> area_global;
+
2013
+
2014 //primitive UUID buffers - total size of all combined is Nobjects
+
2015 std::vector<uint> patch_UUID;
+
2016 std::vector<uint> triangle_UUID;
+
2017 std::vector<uint> disk_UUID;
+
2018 std::vector<uint> tile_UUID;
+
2019 std::vector<uint> voxel_UUID;
+
2020
+
2021 //twosided flag buffer - size=Nobjects
+
2022 std::vector<char> twosided_flag_global;
+
2023
+
2024 //primitive geometry specification buffers
+
2025 std::vector<std::vector<optix::float3> > patch_vertices;
+
2026 std::vector<std::vector<optix::float3> > triangle_vertices;
+
2027 std::vector<std::vector<optix::float3> > disk_vertices;
+
2028 std::vector<std::vector<optix::float3> > tile_vertices;
+
2029 std::vector<std::vector<optix::float3> > voxel_vertices;
+
2030
+
2031 //number of patch subdivisions for each tile - size is same as tile_vertices
+
2032 std::vector<optix::int2> object_subdivisions;
+
2033
+
2034 std::vector<uint> objID_all = context->getAllObjectIDs();
+
2035
+
2036 //ID of object corresponding to each primitive - size Nprimitives
+
2037 std::vector<uint> objectID;
+
2038 objectID.resize(Nprimitives);
2039
-
2040 //ID of object corresponding to each primitive - size Nprimitives
-
2041 std::vector<uint> objectID;
-
2042 objectID.resize(Nprimitives);
-
2043
-
2044 std::size_t patch_count = 0;
-
2045 std::size_t triangle_count = 0;
-
2046 std::size_t disk_count = 0;
-
2047 std::size_t tile_count = 0;
-
2048 std::size_t voxel_count = 0;
+
2040 std::size_t patch_count = 0;
+
2041 std::size_t triangle_count = 0;
+
2042 std::size_t disk_count = 0;
+
2043 std::size_t tile_count = 0;
+
2044 std::size_t voxel_count = 0;
+
2045
+
2046 area_global.resize(Nprimitives);
+
2047
+
2048 primitiveID.resize(0);
2049
-
2050 area_global.resize(Nprimitives);
-
2051
-
2052 primitiveID.resize(0);
-
2053
-
2054 //Create a vector of primitive pointers 'primitives' (note: only add one pointer for compound objects)
-
2055 uint objID = 0;
-
2056 uint ID = 99999;
-
2057 for( std::size_t u=0; u<Nprimitives; u++ ){
-
2058
-
2059 uint p = context_UUIDs.at(u);
-
2060
-
2061 //primitve area
-
2062 area_global.at(u) = context->getPrimitiveArea(p);
-
2063
-
2064 uint parentID = context->getPrimitiveParentObjectID(p);
-
2065
-
2066 if( ID!=parentID || parentID==0 || context->getObjectPointer(parentID)->getObjectType()!=helios::OBJECT_TYPE_TILE ){//if this is a new object, or primitive does not belong to an object
-
2067 primitiveID.push_back( u );
-
2068 ID = parentID;
-
2069 objID++;
-
2070 }else{
-
2071 ID = parentID;
-
2072 }
+
2050 //Create a vector of primitive pointers 'primitives' (note: only add one pointer for compound objects)
+
2051 uint objID = 0;
+
2052 uint ID = 99999;
+
2053 for( std::size_t u=0; u<Nprimitives; u++ ){
+
2054
+
2055 uint p = context_UUIDs.at(u);
+
2056
+
2057 //primitve area
+
2058 area_global.at(u) = context->getPrimitiveArea(p);
+
2059
+
2060 uint parentID = context->getPrimitiveParentObjectID(p);
+
2061
+
2062 if( ID!=parentID || parentID==0 || context->getObjectPointer(parentID)->getObjectType()!=helios::OBJECT_TYPE_TILE ){//if this is a new object, or primitive does not belong to an object
+
2063 primitiveID.push_back( u );
+
2064 ID = parentID;
+
2065 objID++;
+
2066 }else{
+
2067 ID = parentID;
+
2068 }
+
2069
+
2070 assert(objID>0);
+
2071
+
2072 objectID.at(u) = objID-1;
2073
-
2074 assert(objID>0);
+
2074 }
2075
-
2076 objectID.at(u) = objID-1;
-
2077
-
2078 }
-
2079
-
2080 //Nobjects is the number of isolated primitives plus the number of compound objects (all primitives inside and object combined only counts as one element)
-
2081 size_t Nobjects = primitiveID.size();
-
2082
-
2083 m_global.resize(Nobjects);
-
2084 ptype_global.resize(Nobjects);
-
2085 twosided_flag_global.resize(Nobjects);//initialize to be two-sided
-
2086 for( size_t i=0; i<Nobjects; i++ ){
-
2087 twosided_flag_global.at(i) = 1;
-
2088 }
-
2089
-
2090 //Populate attributes for each primitive in the pointer vector 'primitives'
-
2091 for( std::size_t u=0; u<Nobjects; u++ ){
-
2092
-
2093 uint p = context_UUIDs.at(primitiveID.at(u));
-
2094
-
2095 //transformation matrix
-
2096 float m[16];
+
2076 //Nobjects is the number of isolated primitives plus the number of compound objects (all primitives inside and object combined only counts as one element)
+
2077 size_t Nobjects = primitiveID.size();
+
2078
+
2079 m_global.resize(Nobjects);
+
2080 ptype_global.resize(Nobjects);
+
2081 twosided_flag_global.resize(Nobjects);//initialize to be two-sided
+
2082 for( size_t i=0; i<Nobjects; i++ ){
+
2083 twosided_flag_global.at(i) = 1;
+
2084 }
+
2085
+
2086 //Populate attributes for each primitive in the pointer vector 'primitives'
+
2087 for( std::size_t u=0; u<Nobjects; u++ ){
+
2088
+
2089 uint p = context_UUIDs.at(primitiveID.at(u));
+
2090
+
2091 //transformation matrix
+
2092 float m[16];
+
2093
+
2094 //primitive type
+
2095 helios::PrimitiveType type = context->getPrimitiveType(p);
+
2096 ptype_global.at(u) = type;
2097
-
2098 //primitive type
-
2099 helios::PrimitiveType type = context->getPrimitiveType(p);
-
2100 ptype_global.at(u) = type;
-
2101
-
2102 assert( ptype_global.at(u)>=0 && ptype_global.at(u)<=4 );
-
2103
-
2104 //primitive twosided flag
-
2105 if( context->doesPrimitiveDataExist( p,"twosided_flag") ){
-
2106 uint flag;
-
2107 context->getPrimitiveData( p,"twosided_flag",flag);
-
2108 twosided_flag_global.at(u) = char(flag);
-
2109 }
+
2098 assert( ptype_global.at(u)>=0 && ptype_global.at(u)<=4 );
+
2099
+
2100 //primitive twosided flag
+
2101 if( context->doesPrimitiveDataExist( p,"twosided_flag") ){
+
2102 uint flag;
+
2103 context->getPrimitiveData( p,"twosided_flag",flag);
+
2104 twosided_flag_global.at(u) = char(flag);
+
2105 }
+
2106
+
2107 uint parentID = context->getPrimitiveParentObjectID(p);
+
2108
+
2109 if( parentID>0 && context->getObjectPointer(parentID)->getObjectType()==helios::OBJECT_TYPE_TILE ){//tile objects
2110
-
2111 uint parentID = context->getPrimitiveParentObjectID(p);
+
2111 ptype_global.at(u) = 3;
2112
-
2113 if( parentID>0 && context->getObjectPointer(parentID)->getObjectType()==helios::OBJECT_TYPE_TILE ){//tile objects
+
2113 context->getObjectPointer(parentID)->getTransformationMatrix(m);
2114
-
2115 ptype_global.at(u) = 3;
-
2116
-
2117 context->getObjectPointer(parentID)->getTransformationMatrix(m);
-
2118
-
2119 m_global.at(u).resize(16);
-
2120 for( uint i=0; i<16; i++ ){
-
2121 m_global.at(u).at(i) = m[i];
-
2122 }
-
2123
-
2124 std::vector<vec3> vertices = context->getTileObjectPointer(parentID)->getVertices();
-
2125 std::vector<optix::float3> v(4);
-
2126 v.at(0) = optix::make_float3(vertices.at(0).x,vertices.at(0).y,vertices.at(0).z);
-
2127 v.at(1) = optix::make_float3(vertices.at(1).x,vertices.at(1).y,vertices.at(1).z);
-
2128 v.at(2) = optix::make_float3(vertices.at(2).x,vertices.at(2).y,vertices.at(2).z);
-
2129 v.at(3) = optix::make_float3(vertices.at(3).x,vertices.at(3).y,vertices.at(3).z);
-
2130 tile_vertices.push_back(v);
+
2115 m_global.at(u).resize(16);
+
2116 for( uint i=0; i<16; i++ ){
+
2117 m_global.at(u).at(i) = m[i];
+
2118 }
+
2119
+
2120 std::vector<vec3> vertices = context->getTileObjectPointer(parentID)->getVertices();
+
2121 std::vector<optix::float3> v(4);
+
2122 v.at(0) = optix::make_float3(vertices.at(0).x,vertices.at(0).y,vertices.at(0).z);
+
2123 v.at(1) = optix::make_float3(vertices.at(1).x,vertices.at(1).y,vertices.at(1).z);
+
2124 v.at(2) = optix::make_float3(vertices.at(2).x,vertices.at(2).y,vertices.at(2).z);
+
2125 v.at(3) = optix::make_float3(vertices.at(3).x,vertices.at(3).y,vertices.at(3).z);
+
2126 tile_vertices.push_back(v);
+
2127
+
2128 helios::int2 subdiv = context->getTileObjectPointer(parentID)->getSubdivisionCount();
+
2129
+
2130 object_subdivisions.push_back( optix::make_int2(subdiv.x,subdiv.y) );
2131
-
2132 helios::int2 subdiv = context->getTileObjectPointer(parentID)->getSubdivisionCount();
-
2133
-
2134 object_subdivisions.push_back( optix::make_int2(subdiv.x,subdiv.y) );
-
2135
-
2136 tile_UUID.push_back( primitiveID.at(u) );
-
2137 tile_count ++;
+
2132 tile_UUID.push_back( primitiveID.at(u) );
+
2133 tile_count ++;
+
2134
+
2135 }else if( type == helios::PRIMITIVE_TYPE_PATCH ){ //patches
+
2136
+
2137 context->getPrimitiveTransformationMatrix( p,m);
2138
-
2139 }else if( type == helios::PRIMITIVE_TYPE_PATCH ){ //patches
-
2140
-
2141 context->getPrimitiveTransformationMatrix( p,m);
-
2142
-
2143 m_global.at(u).resize(16);
-
2144 for( uint i=0; i<16; i++ ){
-
2145 m_global.at(u).at(i) = m[i];
-
2146 }
-
2147
-
2148 std::vector<vec3> vertices = context->getPrimitiveVertices(p);
-
2149 std::vector<optix::float3> v(4);
-
2150 v.at(0) = optix::make_float3(vertices.at(0).x,vertices.at(0).y,vertices.at(0).z);
-
2151 v.at(1) = optix::make_float3(vertices.at(1).x,vertices.at(1).y,vertices.at(1).z);
-
2152 v.at(2) = optix::make_float3(vertices.at(2).x,vertices.at(2).y,vertices.at(2).z);
-
2153 v.at(3) = optix::make_float3(vertices.at(3).x,vertices.at(3).y,vertices.at(3).z);
-
2154 patch_vertices.push_back(v);
-
2155 object_subdivisions.push_back( optix::make_int2(1,1) );
-
2156 patch_UUID.push_back( primitiveID.at(u) );
-
2157 patch_count ++;
-
2158 }else if( type == helios::PRIMITIVE_TYPE_TRIANGLE ){ //triangles
-
2159
-
2160 context->getPrimitiveTransformationMatrix(p,m);
-
2161
-
2162 m_global.at(u).resize(16);
-
2163 for( uint i=0; i<16; i++ ){
-
2164 m_global.at(u).at(i) = m[i];
-
2165 }
-
2166
-
2167 std::vector<vec3> vertices = context->getPrimitiveVertices(p);
-
2168 std::vector<optix::float3> v(3);
-
2169 v.at(0) = optix::make_float3(vertices.at(0).x,vertices.at(0).y,vertices.at(0).z);
-
2170 v.at(1) = optix::make_float3(vertices.at(1).x,vertices.at(1).y,vertices.at(1).z);
-
2171 v.at(2) = optix::make_float3(vertices.at(2).x,vertices.at(2).y,vertices.at(2).z);
-
2172 triangle_vertices.push_back(v);
-
2173 object_subdivisions.push_back( optix::make_int2(1,1) );
-
2174 triangle_UUID.push_back( primitiveID.at(u) );
-
2175 triangle_count ++;
-
2176 }else if( type == helios::PRIMITIVE_TYPE_VOXEL ){ //voxels
-
2177
-
2178 context->getPrimitiveTransformationMatrix(p,m);
-
2179
-
2180 m_global.at(u).resize(16);
-
2181 for( uint i=0; i<16; i++ ){
-
2182 m_global.at(u).at(i) = m[i];
-
2183 }
-
2184
-
2185 helios::vec3 center = context->getVoxelCenter(p);
-
2186 helios::vec3 size = context->getVoxelSize(p);
-
2187 std::vector<optix::float3> v;
-
2188 v.push_back( optix::make_float3(center.x-0.5f*size.x, center.y-0.5f*size.y, center.z-0.5f*size.z ) );
-
2189 v.push_back( optix::make_float3(center.x+0.5f*size.x, center.y+0.5f*size.y, center.z+0.5f*size.z ) );
-
2190 voxel_vertices.push_back(v);
-
2191 object_subdivisions.push_back( optix::make_int2(1,1) );
-
2192 voxel_UUID.push_back( primitiveID.at(u) );
-
2193 voxel_count ++;
-
2194 }
-
2195
-
2196 }
-
2197
-
2198 //Texture mask data
-
2199 std::vector<std::vector<std::vector<bool> > > maskdata;
-
2200 std::map<std::string,uint> maskname;
-
2201 std::vector<optix::int2> masksize;
-
2202 std::vector<int> maskID;
-
2203 std::vector<std::vector<optix::float2> > uvdata;
-
2204 std::vector<int> uvID;
-
2205 maskID.resize(Nobjects);
-
2206 uvID.resize(Nobjects);
+
2139 m_global.at(u).resize(16);
+
2140 for( uint i=0; i<16; i++ ){
+
2141 m_global.at(u).at(i) = m[i];
+
2142 }
+
2143
+
2144 std::vector<vec3> vertices = context->getPrimitiveVertices(p);
+
2145 std::vector<optix::float3> v(4);
+
2146 v.at(0) = optix::make_float3(vertices.at(0).x,vertices.at(0).y,vertices.at(0).z);
+
2147 v.at(1) = optix::make_float3(vertices.at(1).x,vertices.at(1).y,vertices.at(1).z);
+
2148 v.at(2) = optix::make_float3(vertices.at(2).x,vertices.at(2).y,vertices.at(2).z);
+
2149 v.at(3) = optix::make_float3(vertices.at(3).x,vertices.at(3).y,vertices.at(3).z);
+
2150 patch_vertices.push_back(v);
+
2151 object_subdivisions.push_back( optix::make_int2(1,1) );
+
2152 patch_UUID.push_back( primitiveID.at(u) );
+
2153 patch_count ++;
+
2154 }else if( type == helios::PRIMITIVE_TYPE_TRIANGLE ){ //triangles
+
2155
+
2156 context->getPrimitiveTransformationMatrix(p,m);
+
2157
+
2158 m_global.at(u).resize(16);
+
2159 for( uint i=0; i<16; i++ ){
+
2160 m_global.at(u).at(i) = m[i];
+
2161 }
+
2162
+
2163 std::vector<vec3> vertices = context->getPrimitiveVertices(p);
+
2164 std::vector<optix::float3> v(3);
+
2165 v.at(0) = optix::make_float3(vertices.at(0).x,vertices.at(0).y,vertices.at(0).z);
+
2166 v.at(1) = optix::make_float3(vertices.at(1).x,vertices.at(1).y,vertices.at(1).z);
+
2167 v.at(2) = optix::make_float3(vertices.at(2).x,vertices.at(2).y,vertices.at(2).z);
+
2168 triangle_vertices.push_back(v);
+
2169 object_subdivisions.push_back( optix::make_int2(1,1) );
+
2170 triangle_UUID.push_back( primitiveID.at(u) );
+
2171 triangle_count ++;
+
2172 }else if( type == helios::PRIMITIVE_TYPE_VOXEL ){ //voxels
+
2173
+
2174 context->getPrimitiveTransformationMatrix(p,m);
+
2175
+
2176 m_global.at(u).resize(16);
+
2177 for( uint i=0; i<16; i++ ){
+
2178 m_global.at(u).at(i) = m[i];
+
2179 }
+
2180
+
2181 helios::vec3 center = context->getVoxelCenter(p);
+
2182 helios::vec3 size = context->getVoxelSize(p);
+
2183 std::vector<optix::float3> v;
+
2184 v.push_back( optix::make_float3(center.x-0.5f*size.x, center.y-0.5f*size.y, center.z-0.5f*size.z ) );
+
2185 v.push_back( optix::make_float3(center.x+0.5f*size.x, center.y+0.5f*size.y, center.z+0.5f*size.z ) );
+
2186 voxel_vertices.push_back(v);
+
2187 object_subdivisions.push_back( optix::make_int2(1,1) );
+
2188 voxel_UUID.push_back( primitiveID.at(u) );
+
2189 voxel_count ++;
+
2190 }
+
2191
+
2192 }
+
2193
+
2194 //Texture mask data
+
2195 std::vector<std::vector<std::vector<bool> > > maskdata;
+
2196 std::map<std::string,uint> maskname;
+
2197 std::vector<optix::int2> masksize;
+
2198 std::vector<int> maskID;
+
2199 std::vector<std::vector<optix::float2> > uvdata;
+
2200 std::vector<int> uvID;
+
2201 maskID.resize(Nobjects);
+
2202 uvID.resize(Nobjects);
+
2203
+
2204 for( size_t u=0; u<Nobjects; u++ ){
+
2205
+
2206 uint p = context_UUIDs.at(primitiveID.at(u));
2207
-
2208 for( size_t u=0; u<Nobjects; u++ ){
+
2208 std::string maskfile = context->getPrimitiveTextureFile(p);
2209
-
2210 uint p = context_UUIDs.at(primitiveID.at(u));
+
2210 uint parentID = context->getPrimitiveParentObjectID(p);
2211
-
2212 std::string maskfile = context->getPrimitiveTextureFile(p);
+
2212 if( context->getPrimitiveType(p)==PRIMITIVE_TYPE_VOXEL || maskfile.size()==0 || !context->primitiveTextureHasTransparencyChannel(p) ){ //does not have texture transparency
2213
-
2214 uint parentID = context->getPrimitiveParentObjectID(p);
-
2215
-
2216 if( context->getPrimitiveType(p)==PRIMITIVE_TYPE_VOXEL || maskfile.size()==0 || !context->primitiveTextureHasTransparencyChannel(p) ){ //does not have texture transparency
-
2217
-
2218 maskID.at(u) = -1;
-
2219 uvID.at(u) = -1;
+
2214 maskID.at(u) = -1;
+
2215 uvID.at(u) = -1;
+
2216
+
2217 }else{
+
2218
+
2219 // texture mask data //
2220
-
2221 }else{
-
2222
-
2223 // texture mask data //
-
2224
-
2225 //Check if this mask has already been added
-
2226 if( maskname.find(maskfile) != maskname.end() ){ //has already been added
-
2227 uint ID = maskname.at(maskfile);
+
2221 //Check if this mask has already been added
+
2222 if( maskname.find(maskfile) != maskname.end() ){ //has already been added
+
2223 uint ID = maskname.at(maskfile);
+
2224 maskID.at(u) = ID;
+
2225 }else{ //mask has not been added
+
2226
+
2227 uint ID = maskdata.size();
2228 maskID.at(u) = ID;
-
2229 }else{ //mask has not been added
-
2230
-
2231 uint ID = maskdata.size();
-
2232 maskID.at(u) = ID;
-
2233 maskname[maskfile] = maskdata.size();
-
2234 maskdata.push_back( *context->getPrimitiveTextureTransparencyData(p) );
-
2235 auto sy = maskdata.back().size();
-
2236 auto sx = maskdata.back().front().size();
-
2237 masksize.push_back( optix::make_int2(sx,sy) );
-
2238 }
-
2239
-
2240 // uv coordinates //
-
2241 std::vector<vec2> uv;
+
2229 maskname[maskfile] = maskdata.size();
+
2230 maskdata.push_back( *context->getPrimitiveTextureTransparencyData(p) );
+
2231 auto sy = maskdata.back().size();
+
2232 auto sx = maskdata.back().front().size();
+
2233 masksize.push_back( optix::make_int2(sx,sy) );
+
2234 }
+
2235
+
2236 // uv coordinates //
+
2237 std::vector<vec2> uv;
+
2238
+
2239 if( parentID==0 || context->getObjectPointer(parentID)->getObjectType()!=helios::OBJECT_TYPE_TILE ){ //primitives
+
2240 uv = context->getPrimitiveTextureUV(p);
+
2241 }
2242
-
2243 if( parentID==0 || context->getObjectPointer(parentID)->getObjectType()!=helios::OBJECT_TYPE_TILE ){ //primitives
-
2244 uv = context->getPrimitiveTextureUV(p);
-
2245 }
-
2246
-
2247 if( !uv.empty() ){ //has custom (u,v) coordinates
-
2248 std::vector<optix::float2> uvf2;
-
2249 uvf2.resize(4);
-
2250 //first index if uvf2 is the minimum (u,v) coordinate, second index is the size of the (u,v) rectangle in x- and y-directions.
-
2251
-
2252 for( int i=0; i<uv.size(); i++ ){
-
2253 uvf2.at(i) = optix::make_float2(uv.at(i).x, uv.at(i).y);
-
2254 }
-
2255 if( uv.size()==3 ){
-
2256 uvf2.at(3) = optix::make_float2(0,0);
-
2257 }
-
2258 uvdata.push_back( uvf2 );
-
2259 uvID.at(u) = uvdata.size()-1;
-
2260 }else{ //DOES NOT have custom (u,v) coordinates
-
2261 uvID.at(u) = -1;
-
2262 }
-
2263
-
2264 }
-
2265 }
-
2266
-
2267 int2 size_max(0,0);
-
2268 for( int t=0; t<maskdata.size(); t++ ){
-
2269 int2 sz( maskdata.at(t).front().size(), maskdata.at(t).size() );
-
2270 if( sz.x>size_max.x ){
-
2271 size_max.x = sz.x;
-
2272 }
-
2273 if( sz.y>size_max.y ){
-
2274 size_max.y = sz.y;
-
2275 }
-
2276 }
-
2277
-
2278 for( int t=0; t<maskdata.size(); t++ ){
-
2279 maskdata.at(t).resize(size_max.y);
-
2280 for( int j=0; j<size_max.y; j++ ){
-
2281 maskdata.at(t).at(j).resize(size_max.x);
-
2282 }
-
2283 }
+
2243 if( !uv.empty() ){ //has custom (u,v) coordinates
+
2244 std::vector<optix::float2> uvf2;
+
2245 uvf2.resize(4);
+
2246 //first index if uvf2 is the minimum (u,v) coordinate, second index is the size of the (u,v) rectangle in x- and y-directions.
+
2247
+
2248 for( int i=0; i<uv.size(); i++ ){
+
2249 uvf2.at(i) = optix::make_float2(uv.at(i).x, uv.at(i).y);
+
2250 }
+
2251 if( uv.size()==3 ){
+
2252 uvf2.at(3) = optix::make_float2(0,0);
+
2253 }
+
2254 uvdata.push_back( uvf2 );
+
2255 uvID.at(u) = uvdata.size()-1;
+
2256 }else{ //DOES NOT have custom (u,v) coordinates
+
2257 uvID.at(u) = -1;
+
2258 }
+
2259
+
2260 }
+
2261 }
+
2262
+
2263 int2 size_max(0,0);
+
2264 for( int t=0; t<maskdata.size(); t++ ){
+
2265 int2 sz( maskdata.at(t).front().size(), maskdata.at(t).size() );
+
2266 if( sz.x>size_max.x ){
+
2267 size_max.x = sz.x;
+
2268 }
+
2269 if( sz.y>size_max.y ){
+
2270 size_max.y = sz.y;
+
2271 }
+
2272 }
+
2273
+
2274 for( int t=0; t<maskdata.size(); t++ ){
+
2275 maskdata.at(t).resize(size_max.y);
+
2276 for( int j=0; j<size_max.y; j++ ){
+
2277 maskdata.at(t).at(j).resize(size_max.x);
+
2278 }
+
2279 }
+
2280
+
2281 initializeBuffer3D( maskdata_RTbuffer, maskdata );
+
2282 initializeBuffer1Dint2( masksize_RTbuffer, masksize );
+
2283 initializeBuffer1Di( maskID_RTbuffer, maskID );
2284
-
2285 initializeBuffer3D( maskdata_RTbuffer, maskdata );
-
2286 initializeBuffer1Dint2( masksize_RTbuffer, masksize );
-
2287 initializeBuffer1Di( maskID_RTbuffer, maskID );
-
2288
-
2289 initializeBuffer2Dfloat2( uvdata_RTbuffer, uvdata );
-
2290 initializeBuffer1Di( uvID_RTbuffer, uvID );
+
2285 initializeBuffer2Dfloat2( uvdata_RTbuffer, uvdata );
+
2286 initializeBuffer1Di( uvID_RTbuffer, uvID );
+
2287
+
2288 //Bounding box
+
2289 helios::vec2 xbounds, ybounds, zbounds;
+
2290 context->getDomainBoundingBox( xbounds, ybounds, zbounds );
2291
-
2292 //Bounding box
-
2293 helios::vec2 xbounds, ybounds, zbounds;
-
2294 context->getDomainBoundingBox( xbounds, ybounds, zbounds );
-
2295
-
2296 if( periodic_flag.x==1 || periodic_flag.y ==1 ) {
-
2297 if (!cameras.empty()) {
-
2298 for (auto &camera: cameras) {
-
2299 vec3 camerapos = camera.second.position;
-
2300 if (camerapos.x < xbounds.x || camerapos.x > xbounds.y || camerapos.y < ybounds.x || camerapos.y > ybounds.y) {
-
2301 std::cout << "WARNING (RadiationModel::updateGeometry): camera position is outside of the domain bounding box. Disabling periodic boundary conditions." << std::endl;
-
2302 periodic_flag.x = 0;
-
2303 periodic_flag.y = 0;
-
2304 break;
-
2305 }
-
2306 if (camerapos.z < zbounds.x) {
-
2307 zbounds.x = camerapos.z;
-
2308 }
-
2309 if (camerapos.z > zbounds.y) {
-
2310 zbounds.y = camerapos.z;
-
2311 }
-
2312 }
-
2313 }
-
2314 }
-
2315
-
2316 xbounds.x -= 1e-5;
-
2317 xbounds.y += 1e-5;
-
2318 ybounds.x -= 1e-5;
-
2319 ybounds.y += 1e-5;
-
2320 zbounds.x -= 1e-5;
-
2321 zbounds.y += 1e-5;
-
2322
-
2323 std::vector<uint> bbox_UUID;
-
2324 int bbox_face_count = 0;
+
2292 if( periodic_flag.x==1 || periodic_flag.y ==1 ) {
+
2293 if (!cameras.empty()) {
+
2294 for (auto &camera: cameras) {
+
2295 vec3 camerapos = camera.second.position;
+
2296 if (camerapos.x < xbounds.x || camerapos.x > xbounds.y || camerapos.y < ybounds.x || camerapos.y > ybounds.y) {
+
2297 std::cout << "WARNING (RadiationModel::updateGeometry): camera position is outside of the domain bounding box. Disabling periodic boundary conditions." << std::endl;
+
2298 periodic_flag.x = 0;
+
2299 periodic_flag.y = 0;
+
2300 break;
+
2301 }
+
2302 if (camerapos.z < zbounds.x) {
+
2303 zbounds.x = camerapos.z;
+
2304 }
+
2305 if (camerapos.z > zbounds.y) {
+
2306 zbounds.y = camerapos.z;
+
2307 }
+
2308 }
+
2309 }
+
2310 }
+
2311
+
2312 xbounds.x -= 1e-5;
+
2313 xbounds.y += 1e-5;
+
2314 ybounds.x -= 1e-5;
+
2315 ybounds.y += 1e-5;
+
2316 zbounds.x -= 1e-5;
+
2317 zbounds.y += 1e-5;
+
2318
+
2319 std::vector<uint> bbox_UUID;
+
2320 int bbox_face_count = 0;
+
2321
+
2322 std::vector<std::vector<optix::float3> > bbox_vertices;
+
2323
+
2324 //primitive type
2325
-
2326 std::vector<std::vector<optix::float3> > bbox_vertices;
-
2327
-
2328 //primitive type
-
2329
-
2330 std::vector<optix::float3> v;
-
2331 v.resize(4);
-
2332
-
2333 if( periodic_flag.x==1 ){
-
2334
-
2335 // -x facing
-
2336 v.at(0) = optix::make_float3(xbounds.x,ybounds.x,zbounds.x);
-
2337 v.at(1) = optix::make_float3(xbounds.x,ybounds.y,zbounds.x);
-
2338 v.at(2) = optix::make_float3(xbounds.x,ybounds.y,zbounds.y);
-
2339 v.at(3) = optix::make_float3(xbounds.x,ybounds.x,zbounds.y);
-
2340 bbox_vertices.push_back(v);
-
2341 bbox_UUID.push_back(Nprimitives+bbox_face_count);
-
2342 objectID.push_back( Nobjects+bbox_face_count );
-
2343 ptype_global.push_back(5);
-
2344 bbox_face_count++;
-
2345
-
2346 // +x facing
-
2347 v.at(0) = optix::make_float3(xbounds.y,ybounds.x,zbounds.x);
-
2348 v.at(1) = optix::make_float3(xbounds.y,ybounds.y,zbounds.x);
-
2349 v.at(2) = optix::make_float3(xbounds.y,ybounds.y,zbounds.y);
-
2350 v.at(3) = optix::make_float3(xbounds.y,ybounds.x,zbounds.y);
-
2351 bbox_vertices.push_back(v);
-
2352 bbox_UUID.push_back(Nprimitives+bbox_face_count);
-
2353 objectID.push_back( Nobjects+bbox_face_count );
-
2354 ptype_global.push_back(5);
-
2355 bbox_face_count++;
-
2356
-
2357 }
-
2358 if( periodic_flag.y==1 ){
-
2359
-
2360 // -y facing
-
2361 v.at(0) = optix::make_float3(xbounds.x,ybounds.x,zbounds.x);
-
2362 v.at(1) = optix::make_float3(xbounds.y,ybounds.x,zbounds.x);
-
2363 v.at(2) = optix::make_float3(xbounds.y,ybounds.x,zbounds.y);
-
2364 v.at(3) = optix::make_float3(xbounds.x,ybounds.x,zbounds.y);
-
2365 bbox_vertices.push_back(v);
-
2366 bbox_UUID.push_back(Nprimitives+bbox_face_count);
-
2367 objectID.push_back( Nobjects+bbox_face_count );
-
2368 ptype_global.push_back(5);
-
2369 bbox_face_count++;
-
2370
-
2371 // +y facing
-
2372 v.at(0) = optix::make_float3(xbounds.x,ybounds.y,zbounds.x);
-
2373 v.at(1) = optix::make_float3(xbounds.y,ybounds.y,zbounds.x);
-
2374 v.at(2) = optix::make_float3(xbounds.y,ybounds.y,zbounds.y);
-
2375 v.at(3) = optix::make_float3(xbounds.x,ybounds.y,zbounds.y);
-
2376 bbox_vertices.push_back(v);
-
2377 bbox_UUID.push_back(Nprimitives+bbox_face_count);
-
2378 objectID.push_back( Nobjects+bbox_face_count );
-
2379 ptype_global.push_back(5);
-
2380 bbox_face_count++;
-
2381
-
2382 }
-
2383
-
2384 initializeBuffer2Df( transform_matrix_RTbuffer, m_global );
-
2385 initializeBuffer1Dui( primitive_type_RTbuffer, ptype_global );
-
2386 initializeBuffer1Df( primitive_area_RTbuffer, area_global );
-
2387 initializeBuffer1Dchar( twosided_flag_RTbuffer, twosided_flag_global );
-
2388 initializeBuffer2Dfloat3( patch_vertices_RTbuffer, patch_vertices );
-
2389 initializeBuffer2Dfloat3( triangle_vertices_RTbuffer, triangle_vertices );
-
2390 initializeBuffer2Dfloat3( tile_vertices_RTbuffer, tile_vertices );
-
2391 initializeBuffer2Dfloat3( voxel_vertices_RTbuffer, voxel_vertices );
-
2392 initializeBuffer2Dfloat3( bbox_vertices_RTbuffer, bbox_vertices );
-
2393
-
2394 initializeBuffer1Dint2( object_subdivisions_RTbuffer, object_subdivisions );
-
2395
-
2396 initializeBuffer1Dui( patch_UUID_RTbuffer, patch_UUID );
-
2397 initializeBuffer1Dui( triangle_UUID_RTbuffer, triangle_UUID );
-
2398 initializeBuffer1Dui( disk_UUID_RTbuffer, disk_UUID );
-
2399 initializeBuffer1Dui( tile_UUID_RTbuffer, tile_UUID );
-
2400 initializeBuffer1Dui( voxel_UUID_RTbuffer, voxel_UUID );
-
2401 initializeBuffer1Dui( bbox_UUID_RTbuffer, bbox_UUID );
-
2402
-
2403 initializeBuffer1Dui( objectID_RTbuffer, objectID );
-
2404 initializeBuffer1Dui( primitiveID_RTbuffer, primitiveID );
-
2405
-
2406 RT_CHECK_ERROR( rtGeometrySetPrimitiveCount( patch, patch_count ) );
-
2407 RT_CHECK_ERROR( rtGeometrySetPrimitiveCount( triangle, triangle_count ) );
-
2408 RT_CHECK_ERROR( rtGeometrySetPrimitiveCount( disk, disk_count ) );
-
2409 RT_CHECK_ERROR( rtGeometrySetPrimitiveCount( tile, tile_count ) );
-
2410 RT_CHECK_ERROR( rtGeometrySetPrimitiveCount( voxel, voxel_count ) );
-
2411 RT_CHECK_ERROR( rtGeometrySetPrimitiveCount( bbox, bbox_face_count ) );
-
2412
-
2413 RT_CHECK_ERROR( rtAccelerationMarkDirty( geometry_acceleration ) );
+
2326 std::vector<optix::float3> v;
+
2327 v.resize(4);
+
2328
+
2329 if( periodic_flag.x==1 ){
+
2330
+
2331 // -x facing
+
2332 v.at(0) = optix::make_float3(xbounds.x,ybounds.x,zbounds.x);
+
2333 v.at(1) = optix::make_float3(xbounds.x,ybounds.y,zbounds.x);
+
2334 v.at(2) = optix::make_float3(xbounds.x,ybounds.y,zbounds.y);
+
2335 v.at(3) = optix::make_float3(xbounds.x,ybounds.x,zbounds.y);
+
2336 bbox_vertices.push_back(v);
+
2337 bbox_UUID.push_back(Nprimitives+bbox_face_count);
+
2338 objectID.push_back( Nobjects+bbox_face_count );
+
2339 ptype_global.push_back(5);
+
2340 bbox_face_count++;
+
2341
+
2342 // +x facing
+
2343 v.at(0) = optix::make_float3(xbounds.y,ybounds.x,zbounds.x);
+
2344 v.at(1) = optix::make_float3(xbounds.y,ybounds.y,zbounds.x);
+
2345 v.at(2) = optix::make_float3(xbounds.y,ybounds.y,zbounds.y);
+
2346 v.at(3) = optix::make_float3(xbounds.y,ybounds.x,zbounds.y);
+
2347 bbox_vertices.push_back(v);
+
2348 bbox_UUID.push_back(Nprimitives+bbox_face_count);
+
2349 objectID.push_back( Nobjects+bbox_face_count );
+
2350 ptype_global.push_back(5);
+
2351 bbox_face_count++;
+
2352
+
2353 }
+
2354 if( periodic_flag.y==1 ){
+
2355
+
2356 // -y facing
+
2357 v.at(0) = optix::make_float3(xbounds.x,ybounds.x,zbounds.x);
+
2358 v.at(1) = optix::make_float3(xbounds.y,ybounds.x,zbounds.x);
+
2359 v.at(2) = optix::make_float3(xbounds.y,ybounds.x,zbounds.y);
+
2360 v.at(3) = optix::make_float3(xbounds.x,ybounds.x,zbounds.y);
+
2361 bbox_vertices.push_back(v);
+
2362 bbox_UUID.push_back(Nprimitives+bbox_face_count);
+
2363 objectID.push_back( Nobjects+bbox_face_count );
+
2364 ptype_global.push_back(5);
+
2365 bbox_face_count++;
+
2366
+
2367 // +y facing
+
2368 v.at(0) = optix::make_float3(xbounds.x,ybounds.y,zbounds.x);
+
2369 v.at(1) = optix::make_float3(xbounds.y,ybounds.y,zbounds.x);
+
2370 v.at(2) = optix::make_float3(xbounds.y,ybounds.y,zbounds.y);
+
2371 v.at(3) = optix::make_float3(xbounds.x,ybounds.y,zbounds.y);
+
2372 bbox_vertices.push_back(v);
+
2373 bbox_UUID.push_back(Nprimitives+bbox_face_count);
+
2374 objectID.push_back( Nobjects+bbox_face_count );
+
2375 ptype_global.push_back(5);
+
2376 bbox_face_count++;
+
2377
+
2378 }
+
2379
+
2380 initializeBuffer2Df( transform_matrix_RTbuffer, m_global );
+
2381 initializeBuffer1Dui( primitive_type_RTbuffer, ptype_global );
+
2382 initializeBuffer1Df( primitive_area_RTbuffer, area_global );
+
2383 initializeBuffer1Dchar( twosided_flag_RTbuffer, twosided_flag_global );
+
2384 initializeBuffer2Dfloat3( patch_vertices_RTbuffer, patch_vertices );
+
2385 initializeBuffer2Dfloat3( triangle_vertices_RTbuffer, triangle_vertices );
+
2386 initializeBuffer2Dfloat3( tile_vertices_RTbuffer, tile_vertices );
+
2387 initializeBuffer2Dfloat3( voxel_vertices_RTbuffer, voxel_vertices );
+
2388 initializeBuffer2Dfloat3( bbox_vertices_RTbuffer, bbox_vertices );
+
2389
+
2390 initializeBuffer1Dint2( object_subdivisions_RTbuffer, object_subdivisions );
+
2391
+
2392 initializeBuffer1Dui( patch_UUID_RTbuffer, patch_UUID );
+
2393 initializeBuffer1Dui( triangle_UUID_RTbuffer, triangle_UUID );
+
2394 initializeBuffer1Dui( disk_UUID_RTbuffer, disk_UUID );
+
2395 initializeBuffer1Dui( tile_UUID_RTbuffer, tile_UUID );
+
2396 initializeBuffer1Dui( voxel_UUID_RTbuffer, voxel_UUID );
+
2397 initializeBuffer1Dui( bbox_UUID_RTbuffer, bbox_UUID );
+
2398
+
2399 initializeBuffer1Dui( objectID_RTbuffer, objectID );
+
2400 initializeBuffer1Dui( primitiveID_RTbuffer, primitiveID );
+
2401
+
2402 RT_CHECK_ERROR( rtGeometrySetPrimitiveCount( patch, patch_count ) );
+
2403 RT_CHECK_ERROR( rtGeometrySetPrimitiveCount( triangle, triangle_count ) );
+
2404 RT_CHECK_ERROR( rtGeometrySetPrimitiveCount( disk, disk_count ) );
+
2405 RT_CHECK_ERROR( rtGeometrySetPrimitiveCount( tile, tile_count ) );
+
2406 RT_CHECK_ERROR( rtGeometrySetPrimitiveCount( voxel, voxel_count ) );
+
2407 RT_CHECK_ERROR( rtGeometrySetPrimitiveCount( bbox, bbox_face_count ) );
+
2408
+
2409 RT_CHECK_ERROR( rtAccelerationMarkDirty( geometry_acceleration ) );
+
2410
+
2411 /* Set the top_object variable */
+
2412 //NOTE: not sure if this has to be set again or not..
+
2413 RT_CHECK_ERROR( rtVariableSetObject( top_object, top_level_group ) );
2414
-
2415 /* Set the top_object variable */
-
2416 //NOTE: not sure if this has to be set again or not..
-
2417 RT_CHECK_ERROR( rtVariableSetObject( top_object, top_level_group ) );
-
2418
-
2419 RTsize device_memory;
-
2420 RT_CHECK_ERROR( rtContextGetAttribute( OptiX_Context, RT_CONTEXT_ATTRIBUTE_AVAILABLE_DEVICE_MEMORY, sizeof(RTsize), &device_memory ) );
-
2421
-
2422 device_memory *= 1e-6;
+
2415 RTsize device_memory;
+
2416 RT_CHECK_ERROR( rtContextGetAttribute( OptiX_Context, RT_CONTEXT_ATTRIBUTE_AVAILABLE_DEVICE_MEMORY, sizeof(RTsize), &device_memory ) );
+
2417
+
2418 device_memory *= 1e-6;
+
2419
+
2420 if( device_memory<500 ){
+
2421 std::cout << "WARNING (RadiationModel): device memory is very low (" << device_memory << " MB)" << std::endl;
+
2422 }
2423
-
2424 if( device_memory<500 ){
-
2425 std::cout << "WARNING (RadiationModel): device memory is very low (" << device_memory << " MB)" << std::endl;
-
2426 }
+
2424 /* Validate/Compile OptiX Context */
+
2425 RT_CHECK_ERROR( rtContextValidate( OptiX_Context ) );
+
2426 RT_CHECK_ERROR( rtContextCompile( OptiX_Context ) );
2427
-
2428 /* Validate/Compile OptiX Context */
-
2429 RT_CHECK_ERROR( rtContextValidate( OptiX_Context ) );
-
2430 RT_CHECK_ERROR( rtContextCompile( OptiX_Context ) );
-
2431
-
2432 // device_memory;
-
2433 // RT_CHECK_ERROR( rtContextGetAttribute( OptiX_Context, RT_CONTEXT_ATTRIBUTE_AVAILABLE_DEVICE_MEMORY, sizeof(RTsize), &device_memory ) );
-
2434
-
2435 // device_memory *= 1e-6;
-
2436 // if( device_memory < 1000 ){
-
2437 // printf("available device memory at end of OptiX context compile: %6.3f MB\n",device_memory);
-
2438 // }else{
-
2439 // printf("available device memory at end of OptiX context compile: %6.3f GB\n",device_memory*1e-3);
-
2440 // }
-
2441
-
2442 isgeometryinitialized = true;
-
2443
-
2444 // device_memory;
-
2445 // RT_CHECK_ERROR( rtContextGetAttribute( OptiX_Context, RT_CONTEXT_ATTRIBUTE_AVAILABLE_DEVICE_MEMORY, sizeof(RTsize), &device_memory ) );
-
2446
-
2447 // device_memory *= 1e-6;
-
2448 // if( device_memory < 1000 ){
-
2449 // printf("available device memory before acceleration build: %6.3f MB\n",device_memory);
-
2450 // }else{
-
2451 // printf("available device memory before acceleration build: %6.3f GB\n",device_memory*1e-3);
-
2452 // }
-
2453
-
2454 optix::int3 launch_dim_dummy = optix::make_int3( 1, 1, 1 );
-
2455 RT_CHECK_ERROR( rtContextLaunch3D( OptiX_Context, RAYTYPE_DIRECT , launch_dim_dummy.x, launch_dim_dummy.y, launch_dim_dummy.z ) );
-
2456
-
2457 RT_CHECK_ERROR( rtContextGetAttribute( OptiX_Context, RT_CONTEXT_ATTRIBUTE_AVAILABLE_DEVICE_MEMORY, sizeof(RTsize), &device_memory ) );
-
2458
-
2459 // device_memory;
-
2460 // RT_CHECK_ERROR( rtContextGetAttribute( OptiX_Context, RT_CONTEXT_ATTRIBUTE_AVAILABLE_DEVICE_MEMORY, sizeof(RTsize), &device_memory ) );
-
2461
-
2462 // device_memory *= 1e-6;
-
2463 // if( device_memory < 1000 ){
-
2464 // printf("available device memory at end of acceleration build: %6.3f MB\n",device_memory);
-
2465 // }else{
-
2466 // printf("available device memory at end of acceleration build: %6.3f GB\n",device_memory*1e-3);
-
2467 // }
+
2428 // device_memory;
+
2429 // RT_CHECK_ERROR( rtContextGetAttribute( OptiX_Context, RT_CONTEXT_ATTRIBUTE_AVAILABLE_DEVICE_MEMORY, sizeof(RTsize), &device_memory ) );
+
2430
+
2431 // device_memory *= 1e-6;
+
2432 // if( device_memory < 1000 ){
+
2433 // printf("available device memory at end of OptiX context compile: %6.3f MB\n",device_memory);
+
2434 // }else{
+
2435 // printf("available device memory at end of OptiX context compile: %6.3f GB\n",device_memory*1e-3);
+
2436 // }
+
2437
+
2438 isgeometryinitialized = true;
+
2439
+
2440 // device_memory;
+
2441 // RT_CHECK_ERROR( rtContextGetAttribute( OptiX_Context, RT_CONTEXT_ATTRIBUTE_AVAILABLE_DEVICE_MEMORY, sizeof(RTsize), &device_memory ) );
+
2442
+
2443 // device_memory *= 1e-6;
+
2444 // if( device_memory < 1000 ){
+
2445 // printf("available device memory before acceleration build: %6.3f MB\n",device_memory);
+
2446 // }else{
+
2447 // printf("available device memory before acceleration build: %6.3f GB\n",device_memory*1e-3);
+
2448 // }
+
2449
+
2450 optix::int3 launch_dim_dummy = optix::make_int3( 1, 1, 1 );
+
2451 RT_CHECK_ERROR( rtContextLaunch3D( OptiX_Context, RAYTYPE_DIRECT , launch_dim_dummy.x, launch_dim_dummy.y, launch_dim_dummy.z ) );
+
2452
+
2453 RT_CHECK_ERROR( rtContextGetAttribute( OptiX_Context, RT_CONTEXT_ATTRIBUTE_AVAILABLE_DEVICE_MEMORY, sizeof(RTsize), &device_memory ) );
+
2454
+
2455 // device_memory;
+
2456 // RT_CHECK_ERROR( rtContextGetAttribute( OptiX_Context, RT_CONTEXT_ATTRIBUTE_AVAILABLE_DEVICE_MEMORY, sizeof(RTsize), &device_memory ) );
+
2457
+
2458 // device_memory *= 1e-6;
+
2459 // if( device_memory < 1000 ){
+
2460 // printf("available device memory at end of acceleration build: %6.3f MB\n",device_memory);
+
2461 // }else{
+
2462 // printf("available device memory at end of acceleration build: %6.3f GB\n",device_memory*1e-3);
+
2463 // }
+
2464
+
2465 if( message_flag ){
+
2466 std::cout << "done." << std::endl;
+
2467 }
2468
-
2469 if( message_flag ){
-
2470 std::cout << "done." << std::endl;
-
2471 }
-
2472
-
2473}
+
2469}
-
2474
-
2475void RadiationModel::updateRadiativeProperties( const std::vector<std::string> &labels ) {
-
2476
-
2477 // Possible scenarios for specifying a primitive's radiative properties
-
2478 // 1. If primitive data of form reflectivity_band/transmissivity_band is given, this value is used and overrides any other option.
-
2479 // 2. If primitive data of form reflectivity_spectrum/transmissivity_spectrum is given that references global data containing spectral reflectivity/transmissivity:
-
2480 // 2a. If radiation source spectrum was not given, assume source spectral intensity is constant over band and calculate using primitive spectrum
-
2481 // 2b. If radiation source spectrum was given, calculate using both source and primitive spectrum.
+
2470
+
2471void RadiationModel::updateRadiativeProperties( const std::vector<std::string> &labels ) {
+
2472
+
2473 // Possible scenarios for specifying a primitive's radiative properties
+
2474 // 1. If primitive data of form reflectivity_band/transmissivity_band is given, this value is used and overrides any other option.
+
2475 // 2. If primitive data of form reflectivity_spectrum/transmissivity_spectrum is given that references global data containing spectral reflectivity/transmissivity:
+
2476 // 2a. If radiation source spectrum was not given, assume source spectral intensity is constant over band and calculate using primitive spectrum
+
2477 // 2b. If radiation source spectrum was given, calculate using both source and primitive spectrum.
+
2478
+
2479 if( message_flag ) {
+
2480 std::cout << "Updating radiative properties..." << std::flush;
+
2481 }
2482
-
2483 if( message_flag ) {
-
2484 std::cout << "Updating radiative properties..." << std::flush;
-
2485 }
-
2486
-
2487 uint Nbands = labels.size();//number of radiative bands
-
2488 uint Nsources = radiation_sources.size();
-
2489 uint Ncameras = cameras.size();
-
2490 size_t Nobjects = primitiveID.size();
-
2491 size_t Nprimitives = context_UUIDs.size();
-
2492
-
2493 scattering_iterations_needed.resize(Nbands);
-
2494 for( int b=0; b<Nbands; b++ ){
-
2495 scattering_iterations_needed.at(b) = false;
-
2496 }
+
2483 uint Nbands = labels.size();//number of radiative bands
+
2484 uint Nsources = radiation_sources.size();
+
2485 uint Ncameras = cameras.size();
+
2486 size_t Nobjects = primitiveID.size();
+
2487 size_t Nprimitives = context_UUIDs.size();
+
2488
+
2489 scattering_iterations_needed.resize(Nbands);
+
2490 for( int b=0; b<Nbands; b++ ){
+
2491 scattering_iterations_needed.at(b) = false;
+
2492 }
+
2493
+
2494 std::vector<std::vector<std::vector<float> > > rho, tau; //first index is the source, second index is the primitive, third index is the band
+
2495 std::vector<std::vector<std::vector<std::vector<float> > > > rho_cam, tau_cam; //Fourth index is the camera
+
2496 float eps;
2497
-
2498 std::vector<std::vector<std::vector<float> > > rho, tau; //first index is the source, second index is the primitive, third index is the band
-
2499 std::vector<std::vector<std::vector<std::vector<float> > > > rho_cam, tau_cam; //Fourth index is the camera
-
2500 float eps;
-
2501
-
2502 std::string prop;
-
2503
-
2504 for( auto &label : radiation_bands){
-
2505 label.second.radiativepropertiesinitialized = false;
-
2506 }
-
2507 for ( const auto &label: labels) {
-
2508 radiation_bands.at(label).radiativepropertiesinitialized = true;
-
2509 }
-
2510
-
2511 rho.resize(Nsources);
-
2512 tau.resize(Nsources);
-
2513 for( size_t s=0; s<Nsources; s++ ){
-
2514 rho.at(s).resize(Nprimitives);
-
2515 tau.at(s).resize(Nprimitives);
-
2516 for ( size_t p=0; p<Nprimitives; p++ ) {
-
2517 rho.at(s).at(p).resize(Nbands);
-
2518 tau.at(s).at(p).resize(Nbands);
-
2519 }
-
2520 }
-
2521 if ( Ncameras ) {
-
2522 rho_cam.resize(Nsources);
-
2523 tau_cam.resize(Nsources);
-
2524 for( size_t s=0; s<Nsources; s++ ) {
-
2525 rho_cam.at(s).resize(Nprimitives);
-
2526 tau_cam.at(s).resize(Nprimitives);
-
2527 for (size_t p = 0; p < Nprimitives; p++) {
-
2528 rho_cam.at(s).at(p).resize(Nbands);
-
2529 tau_cam.at(s).at(p).resize(Nbands);
-
2530 for( size_t b=0; b<Nbands; b++ ){
-
2531 rho_cam.at(s).at(p).at(b).resize(Ncameras);
-
2532 tau_cam.at(s).at(p).at(b).resize(Ncameras);
-
2533 }
-
2534 }
-
2535 }
-
2536 }
-
2537
-
2538 //Pre-calculate all unique camera spectral responses for all cameras and bands
-
2539 std::vector<std::vector<std::vector<helios::vec2> > > camera_response_unique;
-
2540 camera_response_unique.resize(Ncameras);
-
2541 if (Ncameras > 0) {
-
2542 uint cam = 0;
-
2543 for (const auto &camera: cameras) {
+
2498 std::string prop;
+
2499
+
2500 for( auto &label : radiation_bands){
+
2501 label.second.radiativepropertiesinitialized = false;
+
2502 }
+
2503 for ( const auto &label: labels) {
+
2504 radiation_bands.at(label).radiativepropertiesinitialized = true;
+
2505 }
+
2506
+
2507 rho.resize(Nsources);
+
2508 tau.resize(Nsources);
+
2509 for( size_t s=0; s<Nsources; s++ ){
+
2510 rho.at(s).resize(Nprimitives);
+
2511 tau.at(s).resize(Nprimitives);
+
2512 for ( size_t p=0; p<Nprimitives; p++ ) {
+
2513 rho.at(s).at(p).resize(Nbands);
+
2514 tau.at(s).at(p).resize(Nbands);
+
2515 }
+
2516 }
+
2517 if ( Ncameras ) {
+
2518 rho_cam.resize(Nsources);
+
2519 tau_cam.resize(Nsources);
+
2520 for( size_t s=0; s<Nsources; s++ ) {
+
2521 rho_cam.at(s).resize(Nprimitives);
+
2522 tau_cam.at(s).resize(Nprimitives);
+
2523 for (size_t p = 0; p < Nprimitives; p++) {
+
2524 rho_cam.at(s).at(p).resize(Nbands);
+
2525 tau_cam.at(s).at(p).resize(Nbands);
+
2526 for( size_t b=0; b<Nbands; b++ ){
+
2527 rho_cam.at(s).at(p).at(b).resize(Ncameras);
+
2528 tau_cam.at(s).at(p).at(b).resize(Ncameras);
+
2529 }
+
2530 }
+
2531 }
+
2532 }
+
2533
+
2534 //Pre-calculate all unique camera spectral responses for all cameras and bands
+
2535 std::vector<std::vector<std::vector<helios::vec2> > > camera_response_unique;
+
2536 camera_response_unique.resize(Ncameras);
+
2537 if (Ncameras > 0) {
+
2538 uint cam = 0;
+
2539 for (const auto &camera: cameras) {
+
2540
+
2541 camera_response_unique.at(cam).resize(Nbands);
+
2542
+
2543 for (uint b = 0; b < Nbands; b++) {
2544
-
2545 camera_response_unique.at(cam).resize(Nbands);
-
2546
-
2547 for (uint b = 0; b < Nbands; b++) {
+
2545 if( camera.second.band_spectral_response.find(labels.at(b)) == camera.second.band_spectral_response.end() ){
+
2546 continue;
+
2547 }
2548
-
2549 if( camera.second.band_spectral_response.find(labels.at(b)) == camera.second.band_spectral_response.end() ){
-
2550 continue;
-
2551 }
+
2549 std::string camera_response = camera.second.band_spectral_response.at(labels.at(b));
+
2550
+
2551 if (!camera_response.empty()) {
2552
-
2553 std::string camera_response = camera.second.band_spectral_response.at(labels.at(b));
-
2554
-
2555 if (!camera_response.empty()) {
-
2556
-
2557 if( !context->doesGlobalDataExist(camera_response.c_str()) ){
-
2558 if( camera_response!="uniform" ) {
-
2559 std::cerr << "WARNING (RadiationModel::updateRadiativeProperties): Camera spectral response \"" << camera_response << "\" does not exist. Assuming a uniform spectral response..." << std::flush;
-
2560 }
-
2561 }else if ( context->getGlobalDataType(camera_response.c_str()) == helios::HELIOS_TYPE_VEC2) {
+
2553 if( !context->doesGlobalDataExist(camera_response.c_str()) ){
+
2554 if( camera_response!="uniform" ) {
+
2555 std::cerr << "WARNING (RadiationModel::updateRadiativeProperties): Camera spectral response \"" << camera_response << "\" does not exist. Assuming a uniform spectral response..." << std::flush;
+
2556 }
+
2557 }else if ( context->getGlobalDataType(camera_response.c_str()) == helios::HELIOS_TYPE_VEC2) {
+
2558
+
2559 std::vector<helios::vec2> data = loadSpectralData(camera_response.c_str());
+
2560
+
2561 camera_response_unique.at(cam).at(b) = data;
2562
-
2563 std::vector<helios::vec2> data = loadSpectralData(camera_response.c_str());
-
2564
-
2565 camera_response_unique.at(cam).at(b) = data;
-
2566
-
2567 }else if ( context->getGlobalDataType(camera_response.c_str()) != helios::HELIOS_TYPE_VEC2 && context->getGlobalDataType(camera_response.c_str()) != helios::HELIOS_TYPE_STRING ) {
-
2568 camera_response.clear();
-
2569 std::cout << "WARNING (RadiationModel::runBand): Camera spectral response \"" << camera_response << "\" is not of type HELIOS_TYPE_VEC2 or HELIOS_TYPE_STRING. Assuming a uniform spectral response..." << std::flush;
-
2570 }
-
2571
-
2572 }
-
2573
-
2574 }
-
2575 cam++;
-
2576 }
-
2577 }
-
2578
-
2579 //Pre-calculate all unique primitive reflectivity and transmissivity values before assigning to primitives
-
2580
-
2581 //first, figure out all of the spectra referenced by all primitives and store it in "surface_spectra" to avoid having to load it again
-
2582 std::map<std::string,std::vector<helios::vec2> > surface_spectra_rho;
-
2583 std::map<std::string,std::vector<helios::vec2> > surface_spectra_tau;
-
2584 for (size_t u = 0; u < Nprimitives; u++) {
-
2585
-
2586 uint UUID = context_UUIDs.at(u);
-
2587
-
2588 if (context->doesPrimitiveDataExist(UUID, "reflectivity_spectrum") ) {
-
2589 if (context->getPrimitiveDataType(UUID, "reflectivity_spectrum") == HELIOS_TYPE_STRING) {
-
2590 std::string spectrum_label;
-
2591 context->getPrimitiveData(UUID, "reflectivity_spectrum", spectrum_label);
-
2592
-
2593 //get the spectral reflectivity data and store it in surface_spectra to avoid having to load it again
-
2594 if (surface_spectra_rho.find(spectrum_label) == surface_spectra_rho.end() ){
-
2595 if( !context->doesGlobalDataExist(spectrum_label.c_str()) ){
-
2596 if (message_flag && !spectrum_label.empty() ) {
-
2597 std::cerr << "WARNING (RadiationModel::runBand): Primitive spectral reflectivity \"" << spectrum_label << "\" does not exist. Using default reflectivity of 0..." << std::flush;
-
2598 }
-
2599 std::vector<helios::vec2> data;
+
2563 }else if ( context->getGlobalDataType(camera_response.c_str()) != helios::HELIOS_TYPE_VEC2 && context->getGlobalDataType(camera_response.c_str()) != helios::HELIOS_TYPE_STRING ) {
+
2564 camera_response.clear();
+
2565 std::cout << "WARNING (RadiationModel::runBand): Camera spectral response \"" << camera_response << "\" is not of type HELIOS_TYPE_VEC2 or HELIOS_TYPE_STRING. Assuming a uniform spectral response..." << std::flush;
+
2566 }
+
2567
+
2568 }
+
2569
+
2570 }
+
2571 cam++;
+
2572 }
+
2573 }
+
2574
+
2575 //Pre-calculate all unique primitive reflectivity and transmissivity values before assigning to primitives
+
2576
+
2577 //first, figure out all of the spectra referenced by all primitives and store it in "surface_spectra" to avoid having to load it again
+
2578 std::map<std::string,std::vector<helios::vec2> > surface_spectra_rho;
+
2579 std::map<std::string,std::vector<helios::vec2> > surface_spectra_tau;
+
2580 for (size_t u = 0; u < Nprimitives; u++) {
+
2581
+
2582 uint UUID = context_UUIDs.at(u);
+
2583
+
2584 if (context->doesPrimitiveDataExist(UUID, "reflectivity_spectrum") ) {
+
2585 if (context->getPrimitiveDataType(UUID, "reflectivity_spectrum") == HELIOS_TYPE_STRING) {
+
2586 std::string spectrum_label;
+
2587 context->getPrimitiveData(UUID, "reflectivity_spectrum", spectrum_label);
+
2588
+
2589 //get the spectral reflectivity data and store it in surface_spectra to avoid having to load it again
+
2590 if (surface_spectra_rho.find(spectrum_label) == surface_spectra_rho.end() ){
+
2591 if( !context->doesGlobalDataExist(spectrum_label.c_str()) ){
+
2592 if (message_flag && !spectrum_label.empty() ) {
+
2593 std::cerr << "WARNING (RadiationModel::runBand): Primitive spectral reflectivity \"" << spectrum_label << "\" does not exist. Using default reflectivity of 0..." << std::flush;
+
2594 }
+
2595 std::vector<helios::vec2> data;
+
2596 surface_spectra_rho.emplace(spectrum_label, data);
+
2597 }else if( context->getGlobalDataType(spectrum_label.c_str() ) == HELIOS_TYPE_VEC2 ) {
+
2598
+
2599 std::vector<helios::vec2> data = loadSpectralData(spectrum_label.c_str());
2600 surface_spectra_rho.emplace(spectrum_label, data);
-
2601 }else if( context->getGlobalDataType(spectrum_label.c_str() ) == HELIOS_TYPE_VEC2 ) {
-
2602
-
2603 std::vector<helios::vec2> data = loadSpectralData(spectrum_label.c_str());
-
2604 surface_spectra_rho.emplace(spectrum_label, data);
-
2605
-
2606 }else if ( context->getGlobalDataType(spectrum_label.c_str()) != helios::HELIOS_TYPE_VEC2 && context->getGlobalDataType(spectrum_label.c_str()) != helios::HELIOS_TYPE_STRING ) {
-
2607 spectrum_label.clear();
-
2608 std::cout << "WARNING (RadiationModel::runBand): Object spectral reflectivity \"" << spectrum_label << "\" is not of type HELIOS_TYPE_VEC2 or HELIOS_TYPE_STRING. Assuming a uniform spectral distribution..." << std::flush;
-
2609 }
-
2610
-
2611 }
-
2612
-
2613 }
-
2614 }
-
2615
-
2616 if (context->doesPrimitiveDataExist(UUID, "transmissivity_spectrum") ) {
-
2617 if (context->getPrimitiveDataType(UUID, "transmissivity_spectrum") == HELIOS_TYPE_STRING) {
-
2618 std::string spectrum_label;
-
2619 context->getPrimitiveData(UUID, "transmissivity_spectrum", spectrum_label);
-
2620
-
2621 //get the spectral transmissivity data and store it in surface_spectra to avoid having to load it again
-
2622 if (surface_spectra_tau.find(spectrum_label) == surface_spectra_tau.end() ){
-
2623 if( !context->doesGlobalDataExist(spectrum_label.c_str()) ) {
-
2624 if (message_flag && !spectrum_label.empty() ){
-
2625 std::cerr << "WARNING (RadiationModel::runBand): Primitive spectral transmissivity \"" << spectrum_label << "\" does not exist. Using default transmissivity of 0..." << std::flush;
-
2626 }
-
2627 std::vector<helios::vec2> data;
+
2601
+
2602 }else if ( context->getGlobalDataType(spectrum_label.c_str()) != helios::HELIOS_TYPE_VEC2 && context->getGlobalDataType(spectrum_label.c_str()) != helios::HELIOS_TYPE_STRING ) {
+
2603 spectrum_label.clear();
+
2604 std::cout << "WARNING (RadiationModel::runBand): Object spectral reflectivity \"" << spectrum_label << "\" is not of type HELIOS_TYPE_VEC2 or HELIOS_TYPE_STRING. Assuming a uniform spectral distribution..." << std::flush;
+
2605 }
+
2606
+
2607 }
+
2608
+
2609 }
+
2610 }
+
2611
+
2612 if (context->doesPrimitiveDataExist(UUID, "transmissivity_spectrum") ) {
+
2613 if (context->getPrimitiveDataType(UUID, "transmissivity_spectrum") == HELIOS_TYPE_STRING) {
+
2614 std::string spectrum_label;
+
2615 context->getPrimitiveData(UUID, "transmissivity_spectrum", spectrum_label);
+
2616
+
2617 //get the spectral transmissivity data and store it in surface_spectra to avoid having to load it again
+
2618 if (surface_spectra_tau.find(spectrum_label) == surface_spectra_tau.end() ){
+
2619 if( !context->doesGlobalDataExist(spectrum_label.c_str()) ) {
+
2620 if (message_flag && !spectrum_label.empty() ){
+
2621 std::cerr << "WARNING (RadiationModel::runBand): Primitive spectral transmissivity \"" << spectrum_label << "\" does not exist. Using default transmissivity of 0..." << std::flush;
+
2622 }
+
2623 std::vector<helios::vec2> data;
+
2624 surface_spectra_tau.emplace(spectrum_label, data);
+
2625 }else if( context->getGlobalDataType(spectrum_label.c_str() ) == HELIOS_TYPE_VEC2 ) {
+
2626
+
2627 std::vector<helios::vec2> data = loadSpectralData(spectrum_label.c_str());
2628 surface_spectra_tau.emplace(spectrum_label, data);
-
2629 }else if( context->getGlobalDataType(spectrum_label.c_str() ) == HELIOS_TYPE_VEC2 ) {
-
2630
-
2631 std::vector<helios::vec2> data = loadSpectralData(spectrum_label.c_str());
-
2632 surface_spectra_tau.emplace(spectrum_label, data);
-
2633
-
2634 }else if ( context->getGlobalDataType(spectrum_label.c_str()) != helios::HELIOS_TYPE_VEC2 && context->getGlobalDataType(spectrum_label.c_str()) != helios::HELIOS_TYPE_STRING ) {
-
2635 spectrum_label.clear();
-
2636 std::cout << "WARNING (RadiationModel::runBand): Object spectral transmissivity \"" << spectrum_label << "\" is not of type HELIOS_TYPE_VEC2 or HELIOS_TYPE_STRING. Assuming a uniform spectral distribution..." << std::flush;
-
2637 }
-
2638 }
+
2629
+
2630 }else if ( context->getGlobalDataType(spectrum_label.c_str()) != helios::HELIOS_TYPE_VEC2 && context->getGlobalDataType(spectrum_label.c_str()) != helios::HELIOS_TYPE_STRING ) {
+
2631 spectrum_label.clear();
+
2632 std::cout << "WARNING (RadiationModel::runBand): Object spectral transmissivity \"" << spectrum_label << "\" is not of type HELIOS_TYPE_VEC2 or HELIOS_TYPE_STRING. Assuming a uniform spectral distribution..." << std::flush;
+
2633 }
+
2634 }
+
2635
+
2636 }
+
2637 }
+
2638 }
2639
-
2640 }
-
2641 }
-
2642 }
-
2643
-
2644// printf("%d (rho) %d (tau) unique surface spectra loaded\n", surface_spectra_rho.size(),surface_spectra_tau.size());
+
2640// printf("%d (rho) %d (tau) unique surface spectra loaded\n", surface_spectra_rho.size(),surface_spectra_tau.size());
+
2641
+
2642 //second, calculate unique values of rho and tau for all sources and bands
+
2643 std::map<std::string,std::vector<std::vector<float> > > rho_unique;
+
2644 std::map<std::string,std::vector<std::vector<float> > > tau_unique;
2645
-
2646 //second, calculate unique values of rho and tau for all sources and bands
-
2647 std::map<std::string,std::vector<std::vector<float> > > rho_unique;
-
2648 std::map<std::string,std::vector<std::vector<float> > > tau_unique;
-
2649
-
2650 std::map<std::string,std::vector<std::vector<std::vector<float> > > > rho_cam_unique;
-
2651 std::map<std::string,std::vector<std::vector<std::vector<float> > > > tau_cam_unique;
-
2652
-
2653 std::vector<std::vector<float> > empty;
-
2654 empty.resize(Nbands);
-
2655 for( uint b=0; b<Nbands; b++ ) {
-
2656 empty.at(b).resize(Nsources,0);
-
2657 }
-
2658 std::vector<std::vector<std::vector<float> > > empty_cam;
-
2659 if (Ncameras > 0) {
-
2660 empty_cam.resize(Nbands);
-
2661 for (uint b = 0; b < Nbands; b++) {
-
2662 empty_cam.at(b).resize(Nsources);
-
2663 for (uint s = 0; s < Nsources; s++) {
-
2664 empty_cam.at(b).at(s).resize(Ncameras, 0);
-
2665 }
-
2666 }
-
2667 }
-
2668
-
2669 for( const auto &spectrum : surface_spectra_rho ) { //reflectivity
-
2670
-
2671 rho_unique.emplace(spectrum.first, empty);
-
2672 if (Ncameras > 0) {
-
2673 rho_cam_unique.emplace(spectrum.first, empty_cam);
-
2674 }
-
2675
-
2676 for (uint b = 0; b < Nbands; b++) {
-
2677 std::string band = labels.at(b);
-
2678
-
2679 for (uint s = 0; s < Nsources; s++) {
-
2680
-
2681 //integrate
-
2682 if( radiation_bands.at(band).wavebandBounds.x != 0 && radiation_bands.at(band).wavebandBounds.y != 0 && !spectrum.second.empty() ) {
-
2683 if (!radiation_sources.at(s).source_spectrum.empty()) {
-
2684 rho_unique.at(spectrum.first).at(b).at(s) = integrateSpectrum(s, spectrum.second, radiation_bands.at(band).wavebandBounds.x, radiation_bands.at(band).wavebandBounds.y);
-
2685 } else {
-
2686 //source spectrum not provided, assume source intensity is constant over the band
-
2687 rho_unique.at(spectrum.first).at(b).at(s) = integrateSpectrum(spectrum.second, radiation_bands.at(band).wavebandBounds.x, radiation_bands.at(band).wavebandBounds.y)/(radiation_bands.at(band).wavebandBounds.y-radiation_bands.at(band).wavebandBounds.x);
-
2688 }
-
2689 }else{
-
2690 rho_unique.at(spectrum.first).at(b).at(s) = rho_default;
-
2691 }
-
2692
-
2693 //cameras
-
2694 if (Ncameras > 0) {
-
2695 uint cam=0;
-
2696 for (const auto &camera: cameras) {
-
2697
-
2698 if( camera_response_unique.at(cam).at(b).empty() ){
-
2699 rho_cam_unique.at(spectrum.first).at(b).at(s).at(cam) = rho_unique.at(spectrum.first).at(b).at(s);
-
2700
-
2701 }else {
-
2702
-
2703 //integrate
-
2704 if( !spectrum.second.empty() ) {
-
2705 if (!radiation_sources.at(s).source_spectrum.empty()) {
-
2706 rho_cam_unique.at(spectrum.first).at(b).at(s).at(cam) = integrateSpectrum(s, spectrum.second, camera_response_unique.at(cam).at(b));
-
2707 } else{
-
2708 rho_cam_unique.at(spectrum.first).at(b).at(s).at(cam) = integrateSpectrum(spectrum.second, camera_response_unique.at(cam).at(b));
-
2709 }
-
2710 }else{
-
2711 rho_cam_unique.at(spectrum.first).at(b).at(s).at(cam) = rho_default;
-
2712 }
-
2713
-
2714 }
+
2646 std::map<std::string,std::vector<std::vector<std::vector<float> > > > rho_cam_unique;
+
2647 std::map<std::string,std::vector<std::vector<std::vector<float> > > > tau_cam_unique;
+
2648
+
2649 std::vector<std::vector<float> > empty;
+
2650 empty.resize(Nbands);
+
2651 for( uint b=0; b<Nbands; b++ ) {
+
2652 empty.at(b).resize(Nsources,0);
+
2653 }
+
2654 std::vector<std::vector<std::vector<float> > > empty_cam;
+
2655 if (Ncameras > 0) {
+
2656 empty_cam.resize(Nbands);
+
2657 for (uint b = 0; b < Nbands; b++) {
+
2658 empty_cam.at(b).resize(Nsources);
+
2659 for (uint s = 0; s < Nsources; s++) {
+
2660 empty_cam.at(b).at(s).resize(Ncameras, 0);
+
2661 }
+
2662 }
+
2663 }
+
2664
+
2665 for( const auto &spectrum : surface_spectra_rho ) { //reflectivity
+
2666
+
2667 rho_unique.emplace(spectrum.first, empty);
+
2668 if (Ncameras > 0) {
+
2669 rho_cam_unique.emplace(spectrum.first, empty_cam);
+
2670 }
+
2671
+
2672 for (uint b = 0; b < Nbands; b++) {
+
2673 std::string band = labels.at(b);
+
2674
+
2675 for (uint s = 0; s < Nsources; s++) {
+
2676
+
2677 //integrate
+
2678 if( radiation_bands.at(band).wavebandBounds.x != 0 && radiation_bands.at(band).wavebandBounds.y != 0 && !spectrum.second.empty() ) {
+
2679 if (!radiation_sources.at(s).source_spectrum.empty()) {
+
2680 rho_unique.at(spectrum.first).at(b).at(s) = integrateSpectrum(s, spectrum.second, radiation_bands.at(band).wavebandBounds.x, radiation_bands.at(band).wavebandBounds.y);
+
2681 } else {
+
2682 //source spectrum not provided, assume source intensity is constant over the band
+
2683 rho_unique.at(spectrum.first).at(b).at(s) = integrateSpectrum(spectrum.second, radiation_bands.at(band).wavebandBounds.x, radiation_bands.at(band).wavebandBounds.y)/(radiation_bands.at(band).wavebandBounds.y-radiation_bands.at(band).wavebandBounds.x);
+
2684 }
+
2685 }else{
+
2686 rho_unique.at(spectrum.first).at(b).at(s) = rho_default;
+
2687 }
+
2688
+
2689 //cameras
+
2690 if (Ncameras > 0) {
+
2691 uint cam=0;
+
2692 for (const auto &camera: cameras) {
+
2693
+
2694 if( camera_response_unique.at(cam).at(b).empty() ){
+
2695 rho_cam_unique.at(spectrum.first).at(b).at(s).at(cam) = rho_unique.at(spectrum.first).at(b).at(s);
+
2696
+
2697 }else {
+
2698
+
2699 //integrate
+
2700 if( !spectrum.second.empty() ) {
+
2701 if (!radiation_sources.at(s).source_spectrum.empty()) {
+
2702 rho_cam_unique.at(spectrum.first).at(b).at(s).at(cam) = integrateSpectrum(s, spectrum.second, camera_response_unique.at(cam).at(b));
+
2703 } else{
+
2704 rho_cam_unique.at(spectrum.first).at(b).at(s).at(cam) = integrateSpectrum(spectrum.second, camera_response_unique.at(cam).at(b));
+
2705 }
+
2706 }else{
+
2707 rho_cam_unique.at(spectrum.first).at(b).at(s).at(cam) = rho_default;
+
2708 }
+
2709
+
2710 }
+
2711
+
2712 cam++;
+
2713 }
+
2714 }
2715
-
2716 cam++;
-
2717 }
-
2718 }
+
2716 }
+
2717
+
2718 }
2719
-
2720 }
+
2720 }
2721
-
2722 }
-
2723
-
2724 }
-
2725
-
2726
-
2727 for( const auto &spectrum : surface_spectra_tau ) {//transmissivity
-
2728
-
2729 tau_unique.emplace(spectrum.first, empty);
-
2730 if (Ncameras > 0) {
-
2731 tau_cam_unique.emplace(spectrum.first, empty_cam);
-
2732 }
-
2733
-
2734 for( uint b=0; b<Nbands; b++ ) {
-
2735 std::string band = labels.at(b);
-
2736
-
2737 for (uint s = 0; s < Nsources; s++) {
-
2738
-
2739 //integrate
-
2740 if( radiation_bands.at(band).wavebandBounds.x!=0 && radiation_bands.at(band).wavebandBounds.y!=0 && !spectrum.second.empty()) {
-
2741 if (!radiation_sources.at(s).source_spectrum.empty()) {
-
2742 tau_unique.at(spectrum.first).at(b).at(s) = integrateSpectrum(s, spectrum.second, radiation_bands.at(band).wavebandBounds.x, radiation_bands.at(band).wavebandBounds.y);
-
2743 } else{
-
2744 tau_unique.at(spectrum.first).at(b).at(s) = integrateSpectrum(spectrum.second, radiation_bands.at(band).wavebandBounds.x, radiation_bands.at(band).wavebandBounds.y)/(radiation_bands.at(band).wavebandBounds.y-radiation_bands.at(band).wavebandBounds.x);
-
2745 }
-
2746 }else{
-
2747 tau_unique.at(spectrum.first).at(b).at(s) = tau_default;
-
2748 }
-
2749
-
2750 //cameras
-
2751 if (Ncameras > 0) {
-
2752 uint cam=0;
-
2753 for (const auto &camera: cameras) {
+
2722
+
2723 for( const auto &spectrum : surface_spectra_tau ) {//transmissivity
+
2724
+
2725 tau_unique.emplace(spectrum.first, empty);
+
2726 if (Ncameras > 0) {
+
2727 tau_cam_unique.emplace(spectrum.first, empty_cam);
+
2728 }
+
2729
+
2730 for( uint b=0; b<Nbands; b++ ) {
+
2731 std::string band = labels.at(b);
+
2732
+
2733 for (uint s = 0; s < Nsources; s++) {
+
2734
+
2735 //integrate
+
2736 if( radiation_bands.at(band).wavebandBounds.x!=0 && radiation_bands.at(band).wavebandBounds.y!=0 && !spectrum.second.empty()) {
+
2737 if (!radiation_sources.at(s).source_spectrum.empty()) {
+
2738 tau_unique.at(spectrum.first).at(b).at(s) = integrateSpectrum(s, spectrum.second, radiation_bands.at(band).wavebandBounds.x, radiation_bands.at(band).wavebandBounds.y);
+
2739 } else{
+
2740 tau_unique.at(spectrum.first).at(b).at(s) = integrateSpectrum(spectrum.second, radiation_bands.at(band).wavebandBounds.x, radiation_bands.at(band).wavebandBounds.y)/(radiation_bands.at(band).wavebandBounds.y-radiation_bands.at(band).wavebandBounds.x);
+
2741 }
+
2742 }else{
+
2743 tau_unique.at(spectrum.first).at(b).at(s) = tau_default;
+
2744 }
+
2745
+
2746 //cameras
+
2747 if (Ncameras > 0) {
+
2748 uint cam=0;
+
2749 for (const auto &camera: cameras) {
+
2750
+
2751 if( camera_response_unique.at(cam).at(b).empty() ){
+
2752
+
2753 tau_cam_unique.at(spectrum.first).at(b).at(s).at(cam) = tau_unique.at(spectrum.first).at(b).at(s);
2754
-
2755 if( camera_response_unique.at(cam).at(b).empty() ){
+
2755 }else {
2756
-
2757 tau_cam_unique.at(spectrum.first).at(b).at(s).at(cam) = tau_unique.at(spectrum.first).at(b).at(s);
-
2758
-
2759 }else {
-
2760
-
2761 //integrate
-
2762 if( !spectrum.second.empty() ) {
-
2763 if (!radiation_sources.at(s).source_spectrum.empty()) {
-
2764 tau_cam_unique.at(spectrum.first).at(b).at(s).at(cam) = integrateSpectrum(s, spectrum.second, camera_response_unique.at(cam).at(b));
-
2765 } else{
-
2766 tau_cam_unique.at(spectrum.first).at(b).at(s).at(cam) = integrateSpectrum(spectrum.second, camera_response_unique.at(cam).at(b));
-
2767 }
-
2768 }else{
-
2769 tau_cam_unique.at(spectrum.first).at(b).at(s).at(cam) = tau_default;
-
2770 }
-
2771
-
2772 }
+
2757 //integrate
+
2758 if( !spectrum.second.empty() ) {
+
2759 if (!radiation_sources.at(s).source_spectrum.empty()) {
+
2760 tau_cam_unique.at(spectrum.first).at(b).at(s).at(cam) = integrateSpectrum(s, spectrum.second, camera_response_unique.at(cam).at(b));
+
2761 } else{
+
2762 tau_cam_unique.at(spectrum.first).at(b).at(s).at(cam) = integrateSpectrum(spectrum.second, camera_response_unique.at(cam).at(b));
+
2763 }
+
2764 }else{
+
2765 tau_cam_unique.at(spectrum.first).at(b).at(s).at(cam) = tau_default;
+
2766 }
+
2767
+
2768 }
+
2769
+
2770 cam++;
+
2771 }
+
2772 }
2773
-
2774 cam++;
-
2775 }
-
2776 }
+
2774 }
+
2775
+
2776 }
2777
-
2778 }
+
2778 }
2779
-
2780 }
+
2780 for (size_t u = 0; u < Nprimitives; u++) {
2781
-
2782 }
+
2782 uint UUID = context_UUIDs.at(u);
2783
-
2784 for (size_t u = 0; u < Nprimitives; u++) {
+
2784 helios::PrimitiveType type = context->getPrimitiveType(UUID);
2785
-
2786 uint UUID = context_UUIDs.at(u);
+
2786 if (type == helios::PRIMITIVE_TYPE_VOXEL) {
2787
-
2788 helios::PrimitiveType type = context->getPrimitiveType(UUID);
-
2789
-
2790 if (type == helios::PRIMITIVE_TYPE_VOXEL) {
-
2791
-
2792// // NOTE: This is a little confusing - for volumes of participating media, we're going to use the "rho" variable to store the absorption coefficient and use the "tau" variable to store the scattering coefficient. This is to save on memory so we don't have to define separate arrays.
+
2788// // NOTE: This is a little confusing - for volumes of participating media, we're going to use the "rho" variable to store the absorption coefficient and use the "tau" variable to store the scattering coefficient. This is to save on memory so we don't have to define separate arrays.
+
2789//
+
2790// // Absorption coefficient
+
2791//
+
2792// prop = "attenuation_coefficient_" + band;
2793//
-
2794// // Absorption coefficient
-
2795//
-
2796// prop = "attenuation_coefficient_" + band;
-
2797//
-
2798// if (context->doesPrimitiveDataExist(UUID, prop.c_str())) {
-
2799// context->getPrimitiveData(UUID, prop.c_str(), rho.at(u).at(b));
-
2800// } else {
-
2801// rho.at(u).at(b) = kappa_default;
-
2802// context->setPrimitiveData(UUID, prop.c_str(), helios::HELIOS_TYPE_FLOAT, 1, &kappa_default);
-
2803// }
-
2804//
-
2805// if (rho.at(u).at(b) < 0) {
-
2806// rho.at(u).at(b) = 0.f;
-
2807// if (message_flag) {
-
2808// std::cout
-
2809// << "WARNING (RadiationModel): absorption coefficient cannot be less than 0. Clamping to 0 for band "
-
2810// << band << "." << std::endl;
-
2811// }
-
2812// } else if (rho.at(u).at(b) > 1.f) {
-
2813// rho.at(u).at(b) = 1.f;
-
2814// if (message_flag) {
-
2815// std::cout
-
2816// << "WARNING (RadiationModel): absorption coefficient cannot be greater than 1. Clamping to 1 for band "
-
2817// << band << "." << std::endl;
-
2818// }
-
2819// }
+
2794// if (context->doesPrimitiveDataExist(UUID, prop.c_str())) {
+
2795// context->getPrimitiveData(UUID, prop.c_str(), rho.at(u).at(b));
+
2796// } else {
+
2797// rho.at(u).at(b) = kappa_default;
+
2798// context->setPrimitiveData(UUID, prop.c_str(), helios::HELIOS_TYPE_FLOAT, 1, &kappa_default);
+
2799// }
+
2800//
+
2801// if (rho.at(u).at(b) < 0) {
+
2802// rho.at(u).at(b) = 0.f;
+
2803// if (message_flag) {
+
2804// std::cout
+
2805// << "WARNING (RadiationModel): absorption coefficient cannot be less than 0. Clamping to 0 for band "
+
2806// << band << "." << std::endl;
+
2807// }
+
2808// } else if (rho.at(u).at(b) > 1.f) {
+
2809// rho.at(u).at(b) = 1.f;
+
2810// if (message_flag) {
+
2811// std::cout
+
2812// << "WARNING (RadiationModel): absorption coefficient cannot be greater than 1. Clamping to 1 for band "
+
2813// << band << "." << std::endl;
+
2814// }
+
2815// }
+
2816//
+
2817// // Scattering coefficient
+
2818//
+
2819// prop = "scattering_coefficient_" + band;
2820//
-
2821// // Scattering coefficient
-
2822//
-
2823// prop = "scattering_coefficient_" + band;
-
2824//
-
2825// if (context->doesPrimitiveDataExist(UUID, prop.c_str())) {
-
2826// context->getPrimitiveData(UUID, prop.c_str(), tau[u]);
-
2827// } else {
-
2828// tau.at(u).at(b) = sigmas_default;
-
2829// context->setPrimitiveData(UUID, prop.c_str(), helios::HELIOS_TYPE_FLOAT, 1, &sigmas_default);
-
2830// }
-
2831//
-
2832// if (tau.at(u).at(b) < 0) {
-
2833// tau.at(u).at(b) = 0.f;
-
2834// if (message_flag) {
-
2835// std::cout
-
2836// << "WARNING (RadiationModel): scattering coefficient cannot be less than 0. Clamping to 0 for band "
-
2837// << band << "." << std::endl;
-
2838// }
-
2839// } else if (tau.at(u).at(b) > 1.f) {
-
2840// tau.at(u).at(b) = 1.f;
-
2841// if (message_flag) {
-
2842// std::cout
-
2843// << "WARNING (RadiationModel): scattering coefficient cannot be greater than 1. Clamping to 1 for band "
-
2844// << band << "." << std::endl;
-
2845// }
-
2846// }
+
2821// if (context->doesPrimitiveDataExist(UUID, prop.c_str())) {
+
2822// context->getPrimitiveData(UUID, prop.c_str(), tau[u]);
+
2823// } else {
+
2824// tau.at(u).at(b) = sigmas_default;
+
2825// context->setPrimitiveData(UUID, prop.c_str(), helios::HELIOS_TYPE_FLOAT, 1, &sigmas_default);
+
2826// }
+
2827//
+
2828// if (tau.at(u).at(b) < 0) {
+
2829// tau.at(u).at(b) = 0.f;
+
2830// if (message_flag) {
+
2831// std::cout
+
2832// << "WARNING (RadiationModel): scattering coefficient cannot be less than 0. Clamping to 0 for band "
+
2833// << band << "." << std::endl;
+
2834// }
+
2835// } else if (tau.at(u).at(b) > 1.f) {
+
2836// tau.at(u).at(b) = 1.f;
+
2837// if (message_flag) {
+
2838// std::cout
+
2839// << "WARNING (RadiationModel): scattering coefficient cannot be greater than 1. Clamping to 1 for band "
+
2840// << band << "." << std::endl;
+
2841// }
+
2842// }
+
2843
+
2844 } else { //other than voxels
+
2845
+
2846 // Reflectivity
2847
-
2848 } else { //other than voxels
-
2849
-
2850 // Reflectivity
-
2851
-
2852 //check for primitive data of form "reflectivity_spectrum" that can be used to calculate reflectivity
-
2853 std::string spectrum_label;
-
2854 if (context->doesPrimitiveDataExist(UUID, "reflectivity_spectrum")) {
-
2855 if (context->getPrimitiveDataType(UUID, "reflectivity_spectrum") == HELIOS_TYPE_STRING) {
-
2856 context->getPrimitiveData(UUID, "reflectivity_spectrum", spectrum_label);
-
2857 }
-
2858 }
-
2859
-
2860 uint b = 0;
-
2861 for (const auto &band: labels) {
-
2862
-
2863 //check for primitive data of form "reflectivity_bandname"
-
2864 prop = "reflectivity_" + band;
-
2865
-
2866 float rho_s = rho_default;
-
2867 if (context->doesPrimitiveDataExist(UUID, prop.c_str())) {
-
2868 context->getPrimitiveData(UUID, prop.c_str(), rho_s);
-
2869 }
-
2870
-
2871 for (uint s = 0; s < Nsources; s++) {
-
2872 if (!spectrum_label.empty() && context->doesGlobalDataExist(spectrum_label.c_str())) {
-
2873
-
2874 rho.at(s).at(u).at(b) = rho_unique.at(spectrum_label).at(b).at(s);
-
2875
-
2876 //cameras
-
2877 for( uint cam=0; cam<Ncameras; cam++ ){
-
2878 rho_cam.at(s).at(u).at(b).at(cam) = rho_cam_unique.at(spectrum_label).at(b).at(s).at(cam);
-
2879 }
+
2848 //check for primitive data of form "reflectivity_spectrum" that can be used to calculate reflectivity
+
2849 std::string spectrum_label;
+
2850 if (context->doesPrimitiveDataExist(UUID, "reflectivity_spectrum")) {
+
2851 if (context->getPrimitiveDataType(UUID, "reflectivity_spectrum") == HELIOS_TYPE_STRING) {
+
2852 context->getPrimitiveData(UUID, "reflectivity_spectrum", spectrum_label);
+
2853 }
+
2854 }
+
2855
+
2856 uint b = 0;
+
2857 for (const auto &band: labels) {
+
2858
+
2859 //check for primitive data of form "reflectivity_bandname"
+
2860 prop = "reflectivity_" + band;
+
2861
+
2862 float rho_s = rho_default;
+
2863 if (context->doesPrimitiveDataExist(UUID, prop.c_str())) {
+
2864 context->getPrimitiveData(UUID, prop.c_str(), rho_s);
+
2865 }
+
2866
+
2867 for (uint s = 0; s < Nsources; s++) {
+
2868 if (!spectrum_label.empty() && context->doesGlobalDataExist(spectrum_label.c_str())) {
+
2869
+
2870 rho.at(s).at(u).at(b) = rho_unique.at(spectrum_label).at(b).at(s);
+
2871
+
2872 //cameras
+
2873 for( uint cam=0; cam<Ncameras; cam++ ){
+
2874 rho_cam.at(s).at(u).at(b).at(cam) = rho_cam_unique.at(spectrum_label).at(b).at(s).at(cam);
+
2875 }
+
2876
+
2877 //assign default value if there is no primitive data or spectral data
+
2878 } else {
+
2879 rho.at(s).at(u).at(b) = rho_s;
2880
-
2881 //assign default value if there is no primitive data or spectral data
-
2882 } else {
-
2883 rho.at(s).at(u).at(b) = rho_s;
-
2884
-
2885 //cameras
-
2886 for( uint cam=0; cam<Ncameras; cam++ ){
-
2887 rho_cam.at(s).at(u).at(b).at(cam) = rho_s;
-
2888 }
-
2889 }
-
2890
-
2891 //error checking
-
2892 if (rho.at(s).at(u).at(b) < 0) {
-
2893 rho.at(s).at(u).at(b) = 0.f;
-
2894 if (message_flag) {
-
2895 std::cout << "WARNING (RadiationModel): reflectivity cannot be less than 0. Clamping to 0 for band " << band << "." << std::flush;
-
2896 }
-
2897 } else if (rho.at(s).at(u).at(b) > 1.f) {
-
2898 rho.at(s).at(u).at(b) = 1.f;
-
2899 if (message_flag) {
-
2900 std::cout << "WARNING (RadiationModel): reflectivity cannot be greater than 1. Clamping to 1 for band " << band << "." << std::flush;
-
2901 }
-
2902 }
-
2903 if( rho.at(s).at(u).at(b)!=0 ){
-
2904 scattering_iterations_needed.at(b) = true;
-
2905 }
-
2906 for( auto &odata : output_prim_data ) {
-
2907 if ( odata == "reflectivity" ){
-
2908 context->setPrimitiveData( UUID, ("reflectivity_" + std::to_string(s) + "_" + band).c_str(), rho.at(s).at(u).at(b) );
-
2909 }
-
2910 }
+
2881 //cameras
+
2882 for( uint cam=0; cam<Ncameras; cam++ ){
+
2883 rho_cam.at(s).at(u).at(b).at(cam) = rho_s;
+
2884 }
+
2885 }
+
2886
+
2887 //error checking
+
2888 if (rho.at(s).at(u).at(b) < 0) {
+
2889 rho.at(s).at(u).at(b) = 0.f;
+
2890 if (message_flag) {
+
2891 std::cout << "WARNING (RadiationModel): reflectivity cannot be less than 0. Clamping to 0 for band " << band << "." << std::flush;
+
2892 }
+
2893 } else if (rho.at(s).at(u).at(b) > 1.f) {
+
2894 rho.at(s).at(u).at(b) = 1.f;
+
2895 if (message_flag) {
+
2896 std::cout << "WARNING (RadiationModel): reflectivity cannot be greater than 1. Clamping to 1 for band " << band << "." << std::flush;
+
2897 }
+
2898 }
+
2899 if( rho.at(s).at(u).at(b)!=0 ){
+
2900 scattering_iterations_needed.at(b) = true;
+
2901 }
+
2902 for( auto &odata : output_prim_data ) {
+
2903 if ( odata == "reflectivity" ){
+
2904 context->setPrimitiveData( UUID, ("reflectivity_" + std::to_string(s) + "_" + band).c_str(), rho.at(s).at(u).at(b) );
+
2905 }
+
2906 }
+
2907
+
2908 }
+
2909 b++;
+
2910 }
2911
-
2912 }
-
2913 b++;
-
2914 }
-
2915
-
2916 // Transmissivity
-
2917
-
2918 //check for primitive data of form "transmissivity_spectrum" that can be used to calculate transmissivity
-
2919 spectrum_label.resize(0);
-
2920 if (context->doesPrimitiveDataExist(UUID, "transmissivity_spectrum")) {
-
2921 if (context->getPrimitiveDataType(UUID, "transmissivity_spectrum") == HELIOS_TYPE_STRING) {
-
2922 context->getPrimitiveData(UUID, "transmissivity_spectrum", spectrum_label);
-
2923 }
-
2924 }
-
2925
-
2926 b = 0;
-
2927 for ( const auto &band: labels ) {
-
2928
-
2929 //check for primitive data of form "transmissivity_bandname"
-
2930 prop = "transmissivity_" + band;
-
2931
-
2932 float tau_s = tau_default;
-
2933 if (context->doesPrimitiveDataExist(UUID, prop.c_str())) {
-
2934 context->getPrimitiveData(UUID, prop.c_str(), tau_s);
-
2935 }
+
2912 // Transmissivity
+
2913
+
2914 //check for primitive data of form "transmissivity_spectrum" that can be used to calculate transmissivity
+
2915 spectrum_label.resize(0);
+
2916 if (context->doesPrimitiveDataExist(UUID, "transmissivity_spectrum")) {
+
2917 if (context->getPrimitiveDataType(UUID, "transmissivity_spectrum") == HELIOS_TYPE_STRING) {
+
2918 context->getPrimitiveData(UUID, "transmissivity_spectrum", spectrum_label);
+
2919 }
+
2920 }
+
2921
+
2922 b = 0;
+
2923 for ( const auto &band: labels ) {
+
2924
+
2925 //check for primitive data of form "transmissivity_bandname"
+
2926 prop = "transmissivity_" + band;
+
2927
+
2928 float tau_s = tau_default;
+
2929 if (context->doesPrimitiveDataExist(UUID, prop.c_str())) {
+
2930 context->getPrimitiveData(UUID, prop.c_str(), tau_s);
+
2931 }
+
2932
+
2933 for (uint s = 0; s < Nsources; s++) {
+
2934 if (!spectrum_label.empty() && context->doesGlobalDataExist(spectrum_label.c_str())) {
+
2935 tau.at(s).at(u).at(b) = tau_unique.at(spectrum_label).at(b).at(s);
2936
-
2937 for (uint s = 0; s < Nsources; s++) {
-
2938 if (!spectrum_label.empty() && context->doesGlobalDataExist(spectrum_label.c_str())) {
-
2939 tau.at(s).at(u).at(b) = tau_unique.at(spectrum_label).at(b).at(s);
-
2940
-
2941 //cameras
-
2942 for( uint cam=0; cam<Ncameras; cam++ ){
-
2943 tau_cam.at(s).at(u).at(b).at(cam) = tau_cam_unique.at(spectrum_label).at(b).at(s).at(cam);
-
2944 }
+
2937 //cameras
+
2938 for( uint cam=0; cam<Ncameras; cam++ ){
+
2939 tau_cam.at(s).at(u).at(b).at(cam) = tau_cam_unique.at(spectrum_label).at(b).at(s).at(cam);
+
2940 }
+
2941
+
2942 //assign default value if there is no primitive data or spectral data
+
2943 } else {
+
2944 tau.at(s).at(u).at(b) = tau_s;
2945
-
2946 //assign default value if there is no primitive data or spectral data
-
2947 } else {
-
2948 tau.at(s).at(u).at(b) = tau_s;
-
2949
-
2950 //cameras
-
2951 for( uint cam=0; cam<Ncameras; cam++ ){
-
2952 tau_cam.at(s).at(u).at(b).at(cam) = tau_s;
-
2953 }
-
2954 }
-
2955
-
2956 //error checking
-
2957 if (tau.at(s).at(u).at(b) < 0) {
-
2958 tau.at(s).at(u).at(b) = 0.f;
-
2959 if (message_flag) {
-
2960 std::cout << "WARNING (RadiationModel): transmissivity cannot be less than 0. Clamping to 0 for band " << band << "." << std::endl;
-
2961 }
-
2962 } else if (tau.at(s).at(u).at(b) > 1.f) {
-
2963 tau.at(s).at(u).at(b) = 1.f;
-
2964 if (message_flag) {
-
2965 std::cout << "WARNING (RadiationModel): transmissivity cannot be greater than 1. Clamping to 1 for band " << band << "." << std::endl;
-
2966 }
-
2967 }
-
2968 if( tau.at(s).at(u).at(b)!=0 ){
-
2969 scattering_iterations_needed.at(b) = true;
-
2970 }
-
2971 for( auto &odata : output_prim_data ) {
-
2972 if (odata == "transmissivity" ){
-
2973 context->setPrimitiveData( UUID, ("transmissivity_" + std::to_string(s) + "_" + band).c_str(), tau.at(s).at(u).at(b) );
-
2974 }
-
2975 }
-
2976 }
-
2977 b++;
-
2978 }
-
2979
-
2980 // Emissivity (only for error checking)
-
2981
-
2982 b = 0;
-
2983 for (const auto &band: labels) {
-
2984
-
2985 prop = "emissivity_" + band;
-
2986
-
2987 if (context->doesPrimitiveDataExist(UUID, prop.c_str())) {
-
2988 context->getPrimitiveData(UUID, prop.c_str(), eps);
-
2989 } else {
-
2990 eps = eps_default;
-
2991 }
-
2992
-
2993 if (eps < 0) {
-
2994 eps = 0.f;
-
2995 if (message_flag) {
-
2996 std::cout << "WARNING (RadiationModel): emissivity cannot be less than 0. Clamping to 0 for band " << band << "." << std::endl;
-
2997 }
-
2998 } else if (eps > 1.f) {
-
2999 eps = 1.f;
-
3000 if (message_flag) {
-
3001 std::cout << "WARNING (RadiationModel): emissivity cannot be greater than 1. Clamping to 1 for band " << band << "." << std::endl;
-
3002 }
-
3003 }
-
3004 if( eps!=1 ){
-
3005 scattering_iterations_needed.at(b) = true;
-
3006 }
-
3007
-
3008 assert(doesBandExist(band));
-
3009
-
3010 for (uint s = 0; s < Nsources; s++) {
-
3011 if (radiation_bands.at(band).emissionFlag) { //emission enabled
-
3012 if (eps != 1.f && rho.at(s).at(u).at(b) == 0 && tau.at(s).at(u).at(b) == 0) {
-
3013 rho.at(s).at(u).at(b) = 1.f - eps;
-
3014 } else if (eps + tau.at(s).at(u).at(b) + rho.at(s).at(u).at(b) != 1.f && eps > 0.f) {
-
3015 helios_runtime_error(
-
3016 "ERROR (RadiationModel): emissivity, transmissivity, and reflectivity must sum to 1 to ensure energy conservation. Band " +
-
3017 band + ", Primitive #" + std::to_string(UUID) + ": eps=" +
-
3018 std::to_string(eps) + ", tau=" + std::to_string(tau.at(s).at(u).at(b)) +
-
3019 ", rho=" + std::to_string(rho.at(s).at(u).at(b)) +
-
3020 ". It is also possible that you forgot to disable emission for this band.");
-
3021 } else if (radiation_bands.at(band).scatteringDepth == 0 && eps != 1.f) {
-
3022 eps = 1.f;
-
3023 rho.at(s).at(u).at(b) = 0.f;
-
3024 tau.at(s).at(u).at(b) = 0.f;
-
3025 }
-
3026 } else if (tau.at(s).at(u).at(b) + rho.at(s).at(u).at(b) > 1.f) {
-
3027 helios_runtime_error(
-
3028 "ERROR (RadiationModel): transmissivity and reflectivity cannot sum to greater than 1 ensure energy conservation. Band " +
-
3029 band + ", Primitive #" + std::to_string(UUID) + ": eps=" +
-
3030 std::to_string(eps) + ", tau=" + std::to_string(tau.at(s).at(u).at(b)) +
-
3031 ", rho=" + std::to_string(rho.at(s).at(u).at(b)) +
-
3032 ". It is also possible that you forgot to disable emission for this band.");
-
3033 }
-
3034 }
-
3035 b++;
-
3036 }
-
3037 }
-
3038 }
-
3039
-
3040 initializeBuffer1Df(rho_RTbuffer, flatten(rho));
-
3041 initializeBuffer1Df(tau_RTbuffer, flatten(tau));
-
3042
-
3043 initializeBuffer1Df(rho_cam_RTbuffer, flatten(rho_cam));
-
3044 initializeBuffer1Df(tau_cam_RTbuffer, flatten(tau_cam));
+
2946 //cameras
+
2947 for( uint cam=0; cam<Ncameras; cam++ ){
+
2948 tau_cam.at(s).at(u).at(b).at(cam) = tau_s;
+
2949 }
+
2950 }
+
2951
+
2952 //error checking
+
2953 if (tau.at(s).at(u).at(b) < 0) {
+
2954 tau.at(s).at(u).at(b) = 0.f;
+
2955 if (message_flag) {
+
2956 std::cout << "WARNING (RadiationModel): transmissivity cannot be less than 0. Clamping to 0 for band " << band << "." << std::endl;
+
2957 }
+
2958 } else if (tau.at(s).at(u).at(b) > 1.f) {
+
2959 tau.at(s).at(u).at(b) = 1.f;
+
2960 if (message_flag) {
+
2961 std::cout << "WARNING (RadiationModel): transmissivity cannot be greater than 1. Clamping to 1 for band " << band << "." << std::endl;
+
2962 }
+
2963 }
+
2964 if( tau.at(s).at(u).at(b)!=0 ){
+
2965 scattering_iterations_needed.at(b) = true;
+
2966 }
+
2967 for( auto &odata : output_prim_data ) {
+
2968 if (odata == "transmissivity" ){
+
2969 context->setPrimitiveData( UUID, ("transmissivity_" + std::to_string(s) + "_" + band).c_str(), tau.at(s).at(u).at(b) );
+
2970 }
+
2971 }
+
2972 }
+
2973 b++;
+
2974 }
+
2975
+
2976 // Emissivity (only for error checking)
+
2977
+
2978 b = 0;
+
2979 for (const auto &band: labels) {
+
2980
+
2981 prop = "emissivity_" + band;
+
2982
+
2983 if (context->doesPrimitiveDataExist(UUID, prop.c_str())) {
+
2984 context->getPrimitiveData(UUID, prop.c_str(), eps);
+
2985 } else {
+
2986 eps = eps_default;
+
2987 }
+
2988
+
2989 if (eps < 0) {
+
2990 eps = 0.f;
+
2991 if (message_flag) {
+
2992 std::cout << "WARNING (RadiationModel): emissivity cannot be less than 0. Clamping to 0 for band " << band << "." << std::endl;
+
2993 }
+
2994 } else if (eps > 1.f) {
+
2995 eps = 1.f;
+
2996 if (message_flag) {
+
2997 std::cout << "WARNING (RadiationModel): emissivity cannot be greater than 1. Clamping to 1 for band " << band << "." << std::endl;
+
2998 }
+
2999 }
+
3000 if( eps!=1 ){
+
3001 scattering_iterations_needed.at(b) = true;
+
3002 }
+
3003
+
3004 assert(doesBandExist(band));
+
3005
+
3006 for (uint s = 0; s < Nsources; s++) {
+
3007 if (radiation_bands.at(band).emissionFlag) { //emission enabled
+
3008 if (eps != 1.f && rho.at(s).at(u).at(b) == 0 && tau.at(s).at(u).at(b) == 0) {
+
3009 rho.at(s).at(u).at(b) = 1.f - eps;
+
3010 } else if (eps + tau.at(s).at(u).at(b) + rho.at(s).at(u).at(b) != 1.f && eps > 0.f) {
+
3011 helios_runtime_error(
+
3012 "ERROR (RadiationModel): emissivity, transmissivity, and reflectivity must sum to 1 to ensure energy conservation. Band " +
+
3013 band + ", Primitive #" + std::to_string(UUID) + ": eps=" +
+
3014 std::to_string(eps) + ", tau=" + std::to_string(tau.at(s).at(u).at(b)) +
+
3015 ", rho=" + std::to_string(rho.at(s).at(u).at(b)) +
+
3016 ". It is also possible that you forgot to disable emission for this band.");
+
3017 } else if (radiation_bands.at(band).scatteringDepth == 0 && eps != 1.f) {
+
3018 eps = 1.f;
+
3019 rho.at(s).at(u).at(b) = 0.f;
+
3020 tau.at(s).at(u).at(b) = 0.f;
+
3021 }
+
3022 } else if (tau.at(s).at(u).at(b) + rho.at(s).at(u).at(b) > 1.f) {
+
3023 helios_runtime_error(
+
3024 "ERROR (RadiationModel): transmissivity and reflectivity cannot sum to greater than 1 ensure energy conservation. Band " +
+
3025 band + ", Primitive #" + std::to_string(UUID) + ": eps=" +
+
3026 std::to_string(eps) + ", tau=" + std::to_string(tau.at(s).at(u).at(b)) +
+
3027 ", rho=" + std::to_string(rho.at(s).at(u).at(b)) +
+
3028 ". It is also possible that you forgot to disable emission for this band.");
+
3029 }
+
3030 }
+
3031 b++;
+
3032 }
+
3033 }
+
3034 }
+
3035
+
3036 initializeBuffer1Df(rho_RTbuffer, flatten(rho));
+
3037 initializeBuffer1Df(tau_RTbuffer, flatten(tau));
+
3038
+
3039 initializeBuffer1Df(rho_cam_RTbuffer, flatten(rho_cam));
+
3040 initializeBuffer1Df(tau_cam_RTbuffer, flatten(tau_cam));
+
3041
+
3042 if( message_flag ) {
+
3043 std::cout << "done\n";
+
3044 }
3045
-
3046 if( message_flag ) {
-
3047 std::cout << "done\n";
-
3048 }
+
3046}
+
3047
+
3048std::vector<helios::vec2> RadiationModel::loadSpectralData( const std::string &global_data_label ) const{
3049
-
3050}
+
3050 std::vector<helios::vec2> spectrum;
3051
-
3052std::vector<helios::vec2> RadiationModel::loadSpectralData( const std::string &global_data_label ) const{
+
3052 if( !context->doesGlobalDataExist(global_data_label.c_str()) ){
3053
-
3054 std::vector<helios::vec2> spectrum;
-
3055
-
3056 if( !context->doesGlobalDataExist(global_data_label.c_str()) ){
-
3057
-
3058 //check if spectral data exists in any of the library files
-
3059 bool data_found = false;
-
3060 for( const auto &file : spectral_library_files ){
-
3061 if( Context::scanXMLForTag( file, "globaldata_vec2", global_data_label ) ){
-
3062 context->loadXML( file.c_str(), true );
-
3063 data_found = true;
-
3064 break;
-
3065 }
+
3054 //check if spectral data exists in any of the library files
+
3055 bool data_found = false;
+
3056 for( const auto &file : spectral_library_files ){
+
3057 if( Context::scanXMLForTag( file, "globaldata_vec2", global_data_label ) ){
+
3058 context->loadXML( file.c_str(), true );
+
3059 data_found = true;
+
3060 break;
+
3061 }
+
3062 }
+
3063
+
3064 if( !data_found ) {
+
3065 helios_runtime_error("ERROR (RadiationModel::loadSpectralData): Global data for spectrum '" + global_data_label + "' could not be found.");
3066 }
-
3067
-
3068 if( !data_found ) {
-
3069 helios_runtime_error("ERROR (RadiationModel::loadSpectralData): Global data for spectrum '" + global_data_label + "' could not be found.");
-
3070 }
+
3067 }
+
3068
+
3069 if( context->getGlobalDataType(global_data_label.c_str()) != HELIOS_TYPE_VEC2 ){
+
3070 helios_runtime_error("ERROR (RadiationModel::loadSpectralData): Global data for spectrum '" + global_data_label + "' is not of type HELIOS_TYPE_VEC2.");
3071 }
3072
-
3073 if( context->getGlobalDataType(global_data_label.c_str()) != HELIOS_TYPE_VEC2 ){
-
3074 helios_runtime_error("ERROR (RadiationModel::loadSpectralData): Global data for spectrum '" + global_data_label + "' is not of type HELIOS_TYPE_VEC2.");
-
3075 }
-
3076
-
3077 context->getGlobalData(global_data_label.c_str(), spectrum);
-
3078
-
3079 //validate spectrum
-
3080 if( spectrum.empty() ){
-
3081 helios_runtime_error("ERROR (RadiationModel::loadSpectralData): Global data for spectrum '" + global_data_label + "' is empty.");
-
3082 }
-
3083 for( auto s=0; s<spectrum.size(); s++ ) {
-
3084 //check that wavelengths are monotonic
-
3085 if( s>0 && spectrum.at(s).x<=spectrum.at(s-1).x ) {
-
3086 helios_runtime_error("ERROR (RadiationModel::loadSpectralData): Source spectral data validation failed. Wavelengths must increase monotonically.");
+
3073 context->getGlobalData(global_data_label.c_str(), spectrum);
+
3074
+
3075 //validate spectrum
+
3076 if( spectrum.empty() ){
+
3077 helios_runtime_error("ERROR (RadiationModel::loadSpectralData): Global data for spectrum '" + global_data_label + "' is empty.");
+
3078 }
+
3079 for( auto s=0; s<spectrum.size(); s++ ) {
+
3080 //check that wavelengths are monotonic
+
3081 if( s>0 && spectrum.at(s).x<=spectrum.at(s-1).x ) {
+
3082 helios_runtime_error("ERROR (RadiationModel::loadSpectralData): Source spectral data validation failed. Wavelengths must increase monotonically.");
+
3083 }
+
3084 //check that wavelength is within a reasonable range
+
3085 if( spectrum.at(s).x<0 || spectrum.at(s).x>100000 ) {
+
3086 helios_runtime_error("ERROR (RadiationModel::loadSpectralData): Source spectral data validation failed. Wavelength value of " + std::to_string(spectrum.at(s).x) + " appears to be erroneous.");
3087 }
-
3088 //check that wavelength is within a reasonable range
-
3089 if( spectrum.at(s).x<0 || spectrum.at(s).x>100000 ) {
-
3090 helios_runtime_error("ERROR (RadiationModel::loadSpectralData): Source spectral data validation failed. Wavelength value of " + std::to_string(spectrum.at(s).x) + " appears to be erroneous.");
+
3088 //check that flux is non-negative
+
3089 if( spectrum.at(s).y<0 ) {
+
3090 helios_runtime_error("ERROR (RadiationModel::loadSpectralData): Source spectral data validation failed. Flux value at wavelength of " + std::to_string(spectrum.at(s).x) + " appears is negative.");
3091 }
-
3092 //check that flux is non-negative
-
3093 if( spectrum.at(s).y<0 ) {
-
3094 helios_runtime_error("ERROR (RadiationModel::loadSpectralData): Source spectral data validation failed. Flux value at wavelength of " + std::to_string(spectrum.at(s).x) + " appears is negative.");
-
3095 }
-
3096 }
+
3092 }
+
3093
+
3094 return spectrum;
+
3095
+
3096}
3097
-
3098 return spectrum;
-
3099
-
3100}
-
3101
-
-
3102void RadiationModel::runBand( const std::string &label ) {
-
3103 std::vector<std::string> labels{label};
-
3104 runBand(labels);
-
3105}
+
+
3098void RadiationModel::runBand( const std::string &label ) {
+
3099 std::vector<std::string> labels{label};
+
3100 runBand(labels);
+
3101}
+
3102
+
+
3103void RadiationModel::runBand( const std::vector<std::string> &label ) {
+
3104
+
3105 //----- VERIFICATIONS -----//
3106
-
-
3107void RadiationModel::runBand( const std::vector<std::string> &label ) {
-
3108
-
3109 //----- VERIFICATIONS -----//
-
3110
-
3111 //Check to make sure some geometry was added to the context
-
3112 if( context->getPrimitiveCount()==0 ){
-
3113 std::cerr << "WARNING (RadiationModel::runBand): No geometry was added to the context. There is nothing to simulate...exiting." << std::endl;
-
3114 return;
-
3115 }
-
3116
-
3117 //Check to make sure geometry was built in OptiX
-
3118 if( !isgeometryinitialized ){
-
3119 updateGeometry();
-
3120 }
-
3121
-
3122 for( const std::string &band : label ){
-
3123 if( !doesBandExist(band) ){
-
3124 helios_runtime_error("ERROR (RadiationModel::runBand): Cannot run band " + band + " because it is not a valid band. Use addRadiationBand() function to add the band.");
-
3125 }
-
3126 }
-
3127
-
3128 //if there are no radiation sources in the simulation, add at least one but with zero fluxes
-
3129 if( radiation_sources.empty() ){
-
3130 addCollimatedRadiationSource();
-
3131 }
-
3132
-
3133 for( const auto &band : label ) {
-
3134 if (!radiation_bands.at(band).radiativepropertiesinitialized) {
-
3135 updateRadiativeProperties(label);
-
3136 break;
-
3137 }
-
3138 }
-
3139
-
3140 //Set the number of radiative bands
-
3141 size_t Nbands = label.size();
-
3142
-
3143 RT_CHECK_ERROR( rtVariableSet1ui( Nbands_RTvariable, Nbands ) );
-
3144
-
3145 //Run all bands by default
-
3146 std::vector<char> band_launch_flag(Nbands);
-
3147 for( uint b=0; b<Nbands; b++ ){
-
3148 band_launch_flag.at(b) = 1;
-
3149 }
-
3150 initializeBuffer1Dchar( band_launch_flag_RTbuffer, band_launch_flag );
-
3151
-
3152 //Set the number of Context primitives
-
3153 size_t Nobjects = primitiveID.size();
-
3154 size_t Nprimitives = context_UUIDs.size();
-
3155 RT_CHECK_ERROR( rtVariableSet1ui( Nprimitives_RTvariable, Nprimitives ) );
-
3156
-
3157 //Set the random number seed
-
3158 RT_CHECK_ERROR( rtVariableSet1ui( random_seed_RTvariable, std::chrono::system_clock::now().time_since_epoch().count() ) );
+
3107 //Check to make sure some geometry was added to the context
+
3108 if( context->getPrimitiveCount()==0 ){
+
3109 std::cerr << "WARNING (RadiationModel::runBand): No geometry was added to the context. There is nothing to simulate...exiting." << std::endl;
+
3110 return;
+
3111 }
+
3112
+
3113 //Check to make sure geometry was built in OptiX
+
3114 if( !isgeometryinitialized ){
+
3115 updateGeometry();
+
3116 }
+
3117
+
3118 for( const std::string &band : label ){
+
3119 if( !doesBandExist(band) ){
+
3120 helios_runtime_error("ERROR (RadiationModel::runBand): Cannot run band " + band + " because it is not a valid band. Use addRadiationBand() function to add the band.");
+
3121 }
+
3122 }
+
3123
+
3124 //if there are no radiation sources in the simulation, add at least one but with zero fluxes
+
3125 if( radiation_sources.empty() ){
+
3126 addCollimatedRadiationSource();
+
3127 }
+
3128
+
3129 for( const auto &band : label ) {
+
3130 if (!radiation_bands.at(band).radiativepropertiesinitialized) {
+
3131 updateRadiativeProperties(label);
+
3132 break;
+
3133 }
+
3134 }
+
3135
+
3136 //Set the number of radiative bands
+
3137 size_t Nbands = label.size();
+
3138
+
3139 RT_CHECK_ERROR( rtVariableSet1ui( Nbands_RTvariable, Nbands ) );
+
3140
+
3141 //Run all bands by default
+
3142 std::vector<char> band_launch_flag(Nbands);
+
3143 for( uint b=0; b<Nbands; b++ ){
+
3144 band_launch_flag.at(b) = 1;
+
3145 }
+
3146 initializeBuffer1Dchar( band_launch_flag_RTbuffer, band_launch_flag );
+
3147
+
3148 //Set the number of Context primitives
+
3149 size_t Nobjects = primitiveID.size();
+
3150 size_t Nprimitives = context_UUIDs.size();
+
3151 RT_CHECK_ERROR( rtVariableSet1ui( Nprimitives_RTvariable, Nprimitives ) );
+
3152
+
3153 //Set the random number seed
+
3154 RT_CHECK_ERROR( rtVariableSet1ui( random_seed_RTvariable, std::chrono::system_clock::now().time_since_epoch().count() ) );
+
3155
+
3156 //Number of external radiation sources
+
3157 uint Nsources = radiation_sources.size();
+
3158 RT_CHECK_ERROR( rtVariableSet1ui( Nsources_RTvariable, Nsources ) );
3159
-
3160 //Number of external radiation sources
-
3161 uint Nsources = radiation_sources.size();
-
3162 RT_CHECK_ERROR( rtVariableSet1ui( Nsources_RTvariable, Nsources ) );
-
3163
-
3164 //Set periodic boundary condition (if applicable)
-
3165 RT_CHECK_ERROR( rtVariableSet2f( periodic_flag_RTvariable, periodic_flag.x, periodic_flag.y ));
+
3160 //Set periodic boundary condition (if applicable)
+
3161 RT_CHECK_ERROR( rtVariableSet2f( periodic_flag_RTvariable, periodic_flag.x, periodic_flag.y ));
+
3162
+
3163 //Number of radiation cameras
+
3164 uint Ncameras = cameras.size();
+
3165 RT_CHECK_ERROR( rtVariableSet1ui( Ncameras_RTvariable, Ncameras ) );
3166
-
3167 //Number of radiation cameras
-
3168 uint Ncameras = cameras.size();
-
3169 RT_CHECK_ERROR( rtVariableSet1ui( Ncameras_RTvariable, Ncameras ) );
-
3170
-
3171 //Set scattering depth for each band
-
3172 std::vector<uint> scattering_depth(Nbands);
-
3173 bool scatteringenabled = false;
-
3174 for( auto b=0; b<Nbands; b++ ){
-
3175 scattering_depth.at(b) = radiation_bands.at(label.at(b)).scatteringDepth;
-
3176 if( scattering_depth.at(b)>0 ){
-
3177 scatteringenabled=true;
-
3178 }
-
3179 }
-
3180 initializeBuffer1Dui( max_scatters_RTbuffer, scattering_depth );
-
3181
-
3182 //Issue warning if rho>0, tau>0, or eps<1
-
3183 for( int b=0; b<Nbands; b++ ){
-
3184 if( scattering_depth.at(b)==0 && scattering_iterations_needed.at(b) ){
-
3185 std::cout << "WARNING (RadiationModel::runBand): Surface radiative properties for band " << label.at(b) << " are set to non-default values, but scattering iterations are disabled. Surface radiative properties will be ignored unless scattering depth is non-zero." << std::endl;
-
3186 }
-
3187 }
-
3188
-
3189 //Set diffuse flux for each band
-
3190 std::vector<float> diffuse_flux(Nbands);
-
3191 bool diffuseenabled = false;
-
3192 for( auto b=0; b<Nbands; b++ ){
-
3193 diffuse_flux.at(b) = getDiffuseFlux( label.at(b) );
-
3194 if( diffuse_flux.at(b)>0.f ){
-
3195 diffuseenabled=true;
-
3196 }
-
3197 }
-
3198 initializeBuffer1Df( diffuse_flux_RTbuffer, diffuse_flux );
-
3199
-
3200 //Set diffuse extinction coefficient for each band
-
3201 std::vector<float> diffuse_extinction(Nbands,0);
-
3202 if( diffuseenabled ) {
-
3203 for (auto b = 0; b < Nbands; b++) {
-
3204 diffuse_extinction.at(b) = radiation_bands.at(label.at(b)).diffuseExtinction;
-
3205 }
-
3206 }
-
3207 initializeBuffer1Df(diffuse_extinction_RTbuffer, diffuse_extinction);
-
3208
-
3209 //Set diffuse distribution normalization factor for each band
-
3210 std::vector<float> diffuse_dist_norm(Nbands,0);
-
3211 if( diffuseenabled ) {
-
3212 for (auto b = 0; b < Nbands; b++) {
-
3213 diffuse_dist_norm.at(b) = radiation_bands.at(label.at(b)).diffuseDistNorm;
-
3214 }
-
3215 initializeBuffer1Df(diffuse_dist_norm_RTbuffer, diffuse_dist_norm);
-
3216 }
-
3217
-
3218 //Set diffuse distribution peak direction for each band
-
3219 std::vector<optix::float3> diffuse_peak_dir(Nbands);
-
3220 if( diffuseenabled ) {
-
3221 for (auto b = 0; b < Nbands; b++) {
-
3222 helios::vec3 peak_dir = radiation_bands.at(label.at(b)).diffusePeakDir;
-
3223 diffuse_peak_dir.at(b) = optix::make_float3(peak_dir.x,peak_dir.y,peak_dir.z);
-
3224 }
-
3225 initializeBuffer1Dfloat3(diffuse_peak_dir_RTbuffer, diffuse_peak_dir);
-
3226 }
-
3227
-
3228 //Determine whether emission is enabled for any band
-
3229 bool emissionenabled = false;
-
3230 for( auto b=0; b<Nbands; b++ ){
-
3231 if( radiation_bands.at(label.at(b)).emissionFlag ){
-
3232 emissionenabled=true;
-
3233 }
-
3234 }
-
3235
-
3236 //Figure out the maximum direct ray count for all bands in this run and use this as the launch size
-
3237 size_t directRayCount = 0;
-
3238 for( const auto &band : label ) {
-
3239 if( radiation_bands.at(band).directRayCount>directRayCount ) {
-
3240 directRayCount = radiation_bands.at(band).directRayCount;
-
3241 }
-
3242 }
-
3243
-
3244 //Figure out the maximum diffuse ray count for all bands in this run and use this as the launch size
-
3245 size_t diffuseRayCount = 0;
-
3246 for( const auto &band : label ) {
-
3247 if( radiation_bands.at(band).diffuseRayCount>diffuseRayCount ) {
-
3248 diffuseRayCount = radiation_bands.at(band).diffuseRayCount;
-
3249 }
-
3250 }
-
3251
-
3252 //Figure out the maximum diffuse ray count for all bands in this run and use this as the launch size
-
3253 size_t scatteringDepth = 0;
-
3254 for( const auto &band : label ) {
-
3255 if( radiation_bands.at(band).scatteringDepth>scatteringDepth ) {
-
3256 scatteringDepth = radiation_bands.at(band).scatteringDepth;
-
3257 }
-
3258 }
-
3259
-
3260 // Zero buffers
-
3261 zeroBuffer1D( radiation_in_RTbuffer, Nbands*Nprimitives );
-
3262 zeroBuffer1D( scatter_buff_top_RTbuffer, Nbands*Nprimitives );
-
3263 zeroBuffer1D( scatter_buff_bottom_RTbuffer, Nbands*Nprimitives );
-
3264 zeroBuffer1D( Rsky_RTbuffer, Nbands*Nprimitives );
-
3265
-
3266 if( Ncameras>0 ){
-
3267 zeroBuffer1D( scatter_buff_top_cam_RTbuffer, Nbands*Nprimitives );
-
3268 zeroBuffer1D( scatter_buff_bottom_cam_RTbuffer, Nbands*Nprimitives );
-
3269 }
+
3167 //Set scattering depth for each band
+
3168 std::vector<uint> scattering_depth(Nbands);
+
3169 bool scatteringenabled = false;
+
3170 for( auto b=0; b<Nbands; b++ ){
+
3171 scattering_depth.at(b) = radiation_bands.at(label.at(b)).scatteringDepth;
+
3172 if( scattering_depth.at(b)>0 ){
+
3173 scatteringenabled=true;
+
3174 }
+
3175 }
+
3176 initializeBuffer1Dui( max_scatters_RTbuffer, scattering_depth );
+
3177
+
3178 //Issue warning if rho>0, tau>0, or eps<1
+
3179 for( int b=0; b<Nbands; b++ ){
+
3180 if( scattering_depth.at(b)==0 && scattering_iterations_needed.at(b) ){
+
3181 std::cout << "WARNING (RadiationModel::runBand): Surface radiative properties for band " << label.at(b) << " are set to non-default values, but scattering iterations are disabled. Surface radiative properties will be ignored unless scattering depth is non-zero." << std::endl;
+
3182 }
+
3183 }
+
3184
+
3185 //Set diffuse flux for each band
+
3186 std::vector<float> diffuse_flux(Nbands);
+
3187 bool diffuseenabled = false;
+
3188 for( auto b=0; b<Nbands; b++ ){
+
3189 diffuse_flux.at(b) = getDiffuseFlux( label.at(b) );
+
3190 if( diffuse_flux.at(b)>0.f ){
+
3191 diffuseenabled=true;
+
3192 }
+
3193 }
+
3194 initializeBuffer1Df( diffuse_flux_RTbuffer, diffuse_flux );
+
3195
+
3196 //Set diffuse extinction coefficient for each band
+
3197 std::vector<float> diffuse_extinction(Nbands,0);
+
3198 if( diffuseenabled ) {
+
3199 for (auto b = 0; b < Nbands; b++) {
+
3200 diffuse_extinction.at(b) = radiation_bands.at(label.at(b)).diffuseExtinction;
+
3201 }
+
3202 }
+
3203 initializeBuffer1Df(diffuse_extinction_RTbuffer, diffuse_extinction);
+
3204
+
3205 //Set diffuse distribution normalization factor for each band
+
3206 std::vector<float> diffuse_dist_norm(Nbands,0);
+
3207 if( diffuseenabled ) {
+
3208 for (auto b = 0; b < Nbands; b++) {
+
3209 diffuse_dist_norm.at(b) = radiation_bands.at(label.at(b)).diffuseDistNorm;
+
3210 }
+
3211 initializeBuffer1Df(diffuse_dist_norm_RTbuffer, diffuse_dist_norm);
+
3212 }
+
3213
+
3214 //Set diffuse distribution peak direction for each band
+
3215 std::vector<optix::float3> diffuse_peak_dir(Nbands);
+
3216 if( diffuseenabled ) {
+
3217 for (auto b = 0; b < Nbands; b++) {
+
3218 helios::vec3 peak_dir = radiation_bands.at(label.at(b)).diffusePeakDir;
+
3219 diffuse_peak_dir.at(b) = optix::make_float3(peak_dir.x,peak_dir.y,peak_dir.z);
+
3220 }
+
3221 initializeBuffer1Dfloat3(diffuse_peak_dir_RTbuffer, diffuse_peak_dir);
+
3222 }
+
3223
+
3224 //Determine whether emission is enabled for any band
+
3225 bool emissionenabled = false;
+
3226 for( auto b=0; b<Nbands; b++ ){
+
3227 if( radiation_bands.at(label.at(b)).emissionFlag ){
+
3228 emissionenabled=true;
+
3229 }
+
3230 }
+
3231
+
3232 //Figure out the maximum direct ray count for all bands in this run and use this as the launch size
+
3233 size_t directRayCount = 0;
+
3234 for( const auto &band : label ) {
+
3235 if( radiation_bands.at(band).directRayCount>directRayCount ) {
+
3236 directRayCount = radiation_bands.at(band).directRayCount;
+
3237 }
+
3238 }
+
3239
+
3240 //Figure out the maximum diffuse ray count for all bands in this run and use this as the launch size
+
3241 size_t diffuseRayCount = 0;
+
3242 for( const auto &band : label ) {
+
3243 if( radiation_bands.at(band).diffuseRayCount>diffuseRayCount ) {
+
3244 diffuseRayCount = radiation_bands.at(band).diffuseRayCount;
+
3245 }
+
3246 }
+
3247
+
3248 //Figure out the maximum diffuse ray count for all bands in this run and use this as the launch size
+
3249 size_t scatteringDepth = 0;
+
3250 for( const auto &band : label ) {
+
3251 if( radiation_bands.at(band).scatteringDepth>scatteringDepth ) {
+
3252 scatteringDepth = radiation_bands.at(band).scatteringDepth;
+
3253 }
+
3254 }
+
3255
+
3256 // Zero buffers
+
3257 zeroBuffer1D( radiation_in_RTbuffer, Nbands*Nprimitives );
+
3258 zeroBuffer1D( scatter_buff_top_RTbuffer, Nbands*Nprimitives );
+
3259 zeroBuffer1D( scatter_buff_bottom_RTbuffer, Nbands*Nprimitives );
+
3260 zeroBuffer1D( Rsky_RTbuffer, Nbands*Nprimitives );
+
3261
+
3262 if( Ncameras>0 ){
+
3263 zeroBuffer1D( scatter_buff_top_cam_RTbuffer, Nbands*Nprimitives );
+
3264 zeroBuffer1D( scatter_buff_bottom_cam_RTbuffer, Nbands*Nprimitives );
+
3265 }
+
3266
+
3267 std::vector<float> TBS_top, TBS_bottom;
+
3268 TBS_top.resize(Nbands*Nprimitives, 0);
+
3269 TBS_bottom = TBS_top;
3270
-
3271 std::vector<float> TBS_top, TBS_bottom;
-
3272 TBS_top.resize(Nbands*Nprimitives, 0);
-
3273 TBS_bottom = TBS_top;
+
3271 std::map<std::string,std::vector<std::vector<float> > > radiation_in_camera;
+
3272
+
3273 size_t maxRays = 1024*1024*1024; //maximum number of total rays in a launch
3274
-
3275 std::map<std::string,std::vector<std::vector<float> > > radiation_in_camera;
+
3275 // ***** DIRECT LAUNCH FROM ALL RADIATION SOURCES ***** //
3276
-
3277 size_t maxRays = 1024*1024*1024; //maximum number of total rays in a launch
+
3277 optix::int3 launch_dim_dir;
3278
-
3279 // ***** DIRECT LAUNCH FROM ALL RADIATION SOURCES ***** //
-
3280
-
3281 optix::int3 launch_dim_dir;
-
3282
-
3283 bool rundirect = false;
-
3284 for( uint s=0; s<Nsources; s++ ){
-
3285 for( uint b=0; b<Nbands; b++ ){
-
3286 if( getSourceFlux( s, label.at(b))>0.f){
-
3287 rundirect = true;
-
3288 break;
-
3289 }
-
3290 }
-
3291 }
+
3279 bool rundirect = false;
+
3280 for( uint s=0; s<Nsources; s++ ){
+
3281 for( uint b=0; b<Nbands; b++ ){
+
3282 if( getSourceFlux( s, label.at(b))>0.f){
+
3283 rundirect = true;
+
3284 break;
+
3285 }
+
3286 }
+
3287 }
+
3288
+
3289 if( Nsources>0 && rundirect ){
+
3290
+
3291 //update radiation source buffers
3292
-
3293 if( Nsources>0 && rundirect ){
-
3294
-
3295 //update radiation source buffers
-
3296
-
3297 std::vector<std::vector<float> > fluxes; //first index is the source, second index is the band (only those passed to runBand() function)
-
3298 fluxes.resize(Nsources);
-
3299 std::vector<optix::float3> positions(Nsources);
-
3300 std::vector<optix::float2> widths(Nsources);
-
3301 std::vector<optix::float3> rotations(Nsources);
-
3302 std::vector<uint> types(Nsources);
-
3303
-
3304 size_t s=0;
-
3305 for( const auto &source : radiation_sources ) {
-
3306
-
3307 fluxes.at(s).resize(Nbands);
+
3293 std::vector<std::vector<float> > fluxes; //first index is the source, second index is the band (only those passed to runBand() function)
+
3294 fluxes.resize(Nsources);
+
3295 std::vector<optix::float3> positions(Nsources);
+
3296 std::vector<optix::float2> widths(Nsources);
+
3297 std::vector<optix::float3> rotations(Nsources);
+
3298 std::vector<uint> types(Nsources);
+
3299
+
3300 size_t s=0;
+
3301 for( const auto &source : radiation_sources ) {
+
3302
+
3303 fluxes.at(s).resize(Nbands);
+
3304
+
3305 for( auto b=0; b<label.size(); b++ ) {
+
3306 fluxes.at(s).at(b) = getSourceFlux( s, label.at(b));
+
3307 }
3308
-
3309 for( auto b=0; b<label.size(); b++ ) {
-
3310 fluxes.at(s).at(b) = getSourceFlux( s, label.at(b));
-
3311 }
-
3312
-
3313 positions.at(s) = optix::make_float3( source.source_position.x, source.source_position.y, source.source_position.z );
-
3314 widths.at(s) = optix::make_float2(source.source_width.x, source.source_width.y);
-
3315 rotations.at(s) = optix::make_float3( source.source_rotation.x,source.source_rotation.y,source.source_rotation.z );
-
3316 types.at(s) = source.source_type;
-
3317
-
3318 s++;
-
3319 }
-
3320
-
3321 initializeBuffer1Df( source_fluxes_RTbuffer, flatten(fluxes) );
-
3322 initializeBuffer1Dfloat3( source_positions_RTbuffer, positions );
-
3323 initializeBuffer1Dfloat2( source_widths_RTbuffer, widths );
-
3324 initializeBuffer1Dfloat3( source_rotations_RTbuffer, rotations );
-
3325 initializeBuffer1Dui( source_types_RTbuffer, types );
-
3326
-
3327 // -- Ray Trace -- //
-
3328
-
3329 // Compute direct launch dimension
-
3330 size_t n = ceil(sqrt(double(directRayCount)));
+
3309 positions.at(s) = optix::make_float3( source.source_position.x, source.source_position.y, source.source_position.z );
+
3310 widths.at(s) = optix::make_float2(source.source_width.x, source.source_width.y);
+
3311 rotations.at(s) = optix::make_float3( source.source_rotation.x,source.source_rotation.y,source.source_rotation.z );
+
3312 types.at(s) = source.source_type;
+
3313
+
3314 s++;
+
3315 }
+
3316
+
3317 initializeBuffer1Df( source_fluxes_RTbuffer, flatten(fluxes) );
+
3318 initializeBuffer1Dfloat3( source_positions_RTbuffer, positions );
+
3319 initializeBuffer1Dfloat2( source_widths_RTbuffer, widths );
+
3320 initializeBuffer1Dfloat3( source_rotations_RTbuffer, rotations );
+
3321 initializeBuffer1Dui( source_types_RTbuffer, types );
+
3322
+
3323 // -- Ray Trace -- //
+
3324
+
3325 // Compute direct launch dimension
+
3326 size_t n = ceil(sqrt(double(directRayCount)));
+
3327
+
3328 size_t maxPrims = floor( float(maxRays)/float(n*n) );
+
3329
+
3330 int Nlaunches = ceil( n*n*Nobjects/float(maxRays) );
3331
-
3332 size_t maxPrims = floor( float(maxRays)/float(n*n) );
+
3332 size_t prims_per_launch = fmin( Nobjects, maxPrims );
3333
-
3334 int Nlaunches = ceil( n*n*Nobjects/float(maxRays) );
+
3334 for( uint launch=0; launch<Nlaunches; launch++ ){
3335
-
3336 size_t prims_per_launch = fmin( Nobjects, maxPrims );
-
3337
-
3338 for( uint launch=0; launch<Nlaunches; launch++ ){
-
3339
-
3340 size_t prims_this_launch;
-
3341 if( (launch+1)*prims_per_launch > Nobjects ){
-
3342 prims_this_launch = Nobjects-launch*prims_per_launch;
-
3343 }else{
-
3344 prims_this_launch = prims_per_launch;
-
3345 }
+
3336 size_t prims_this_launch;
+
3337 if( (launch+1)*prims_per_launch > Nobjects ){
+
3338 prims_this_launch = Nobjects-launch*prims_per_launch;
+
3339 }else{
+
3340 prims_this_launch = prims_per_launch;
+
3341 }
+
3342
+
3343 RT_CHECK_ERROR( rtVariableSet1ui( launch_offset_RTvariable, launch*prims_per_launch ) );
+
3344
+
3345 launch_dim_dir = optix::make_int3( round(n), round(n), prims_this_launch );
3346
-
3347 RT_CHECK_ERROR( rtVariableSet1ui( launch_offset_RTvariable, launch*prims_per_launch ) );
-
3348
-
3349 launch_dim_dir = optix::make_int3( round(n), round(n), prims_this_launch );
-
3350
-
3351 if( message_flag ){
-
3352 std::cout << "Performing primary direct radiation ray trace for bands ";
-
3353 for( const auto &band : label ) {
-
3354 std::cout << band << ", ";
-
3355 }
-
3356 std::cout << " (batch " << launch+1 << " of " << Nlaunches << ")..." << std::flush;
-
3357 }
-
3358 RT_CHECK_ERROR( rtContextLaunch3D( OptiX_Context, RAYTYPE_DIRECT , launch_dim_dir.x, launch_dim_dir.y, launch_dim_dir.z ) );
+
3347 if( message_flag ){
+
3348 std::cout << "Performing primary direct radiation ray trace for bands ";
+
3349 for( const auto &band : label ) {
+
3350 std::cout << band << ", ";
+
3351 }
+
3352 std::cout << " (batch " << launch+1 << " of " << Nlaunches << ")..." << std::flush;
+
3353 }
+
3354 RT_CHECK_ERROR( rtContextLaunch3D( OptiX_Context, RAYTYPE_DIRECT , launch_dim_dir.x, launch_dim_dir.y, launch_dim_dir.z ) );
+
3355
+
3356 if( message_flag ){
+
3357 std::cout << "\r \r" << std::flush;
+
3358 }
3359
-
3360 if( message_flag ){
-
3361 std::cout << "\r \r" << std::flush;
-
3362 }
-
3363
-
3364 }
-
3365
-
3366 if( message_flag ){
-
3367 std::cout << "Performing primary direct radiation ray trace for bands ";
-
3368 for( const auto &band : label ) {
-
3369 std::cout << band << ", ";
-
3370 }
-
3371 std::cout << "...done." << std::endl;
-
3372 }
+
3360 }
+
3361
+
3362 if( message_flag ){
+
3363 std::cout << "Performing primary direct radiation ray trace for bands ";
+
3364 for( const auto &band : label ) {
+
3365 std::cout << band << ", ";
+
3366 }
+
3367 std::cout << "...done." << std::endl;
+
3368 }
+
3369
+
3370 }//end direct source launch
+
3371
+
3372 // --- Diffuse/Emission launch ---- //
3373
-
3374 }//end direct source launch
+
3374 if( emissionenabled || diffuseenabled ){
3375
-
3376 // --- Diffuse/Emission launch ---- //
-
3377
-
3378 if( emissionenabled || diffuseenabled ){
+
3376 std::vector<float> flux_top, flux_bottom;
+
3377 flux_top.resize(Nbands*Nprimitives,0);
+
3378 flux_bottom = flux_top;
3379
-
3380 std::vector<float> flux_top, flux_bottom;
-
3381 flux_top.resize(Nbands*Nprimitives,0);
-
3382 flux_bottom = flux_top;
-
3383
-
3384 //If we are doing a diffuse/emission ray trace anyway and we have direct scattered energy, we get a "free" scattering trace here
-
3385 if( scatteringenabled && rundirect ){
-
3386 flux_top=getOptiXbufferData( scatter_buff_top_RTbuffer );
-
3387 flux_bottom=getOptiXbufferData( scatter_buff_bottom_RTbuffer );
-
3388 zeroBuffer1D( scatter_buff_top_RTbuffer, Nbands*Nprimitives );
-
3389 zeroBuffer1D( scatter_buff_bottom_RTbuffer, Nbands*Nprimitives );
-
3390 }
-
3391
-
3392 //add any emitted energy to the outgoing energy buffer
-
3393 if( emissionenabled ) {
-
3394 // Update primitive outgoing emission
-
3395 float eps, temperature;
-
3396
-
3397 void *ptr;
-
3398 float *scatter_buff_top_cam_data, *scatter_buff_bottom_cam_data;
-
3399 if( Ncameras>0 ){
-
3400 //add emitted flux to camera scattered energy buffer
-
3401 RT_CHECK_ERROR( rtBufferMap( scatter_buff_top_cam_RTbuffer, &ptr ) );
-
3402 scatter_buff_top_cam_data = (float*)ptr;
-
3403 RT_CHECK_ERROR( rtBufferMap( scatter_buff_bottom_cam_RTbuffer, &ptr ) );
-
3404 scatter_buff_bottom_cam_data = (float*)ptr;
-
3405 }
-
3406
-
3407 for (auto b = 0; b < Nbands; b++) {
-
3408 if (radiation_bands.at(label.at(b)).emissionFlag) {
-
3409 std::string prop = "emissivity_" + label.at(b);
-
3410 for (size_t u = 0; u < Nprimitives; u++) {
-
3411 size_t ind = u * Nbands + b;
-
3412 uint p = context_UUIDs.at(u);
-
3413 if (context->doesPrimitiveDataExist(p, prop.c_str())) {
-
3414 context->getPrimitiveData(p, prop.c_str(), eps);
-
3415 } else {
-
3416 eps = eps_default;
-
3417 }
-
3418 if (scattering_depth.at(b) == 0 && eps != 1.f) {
-
3419 eps = 1.f;
-
3420 }
-
3421 if (context->doesPrimitiveDataExist(p, "temperature")) {
-
3422 context->getPrimitiveData(p, "temperature", temperature);
-
3423 if (temperature < 0) {
-
3424 temperature = temperature_default;
-
3425 }
-
3426 } else {
-
3427 temperature = temperature_default;
-
3428 }
-
3429 float out_top = sigma * eps * pow(temperature, 4);
-
3430 flux_top.at(ind) += out_top;
-
3431 if( Ncameras>0 ) {
-
3432 scatter_buff_top_cam_data[ind] += out_top;
-
3433 }
-
3434 if (!context->doesPrimitiveDataExist(p, "twosided_flag")) { //if does not exist, assume two-sided
-
3435 flux_bottom.at(ind) += flux_top.at(ind);
-
3436 if( Ncameras>0 ) {
-
3437 scatter_buff_bottom_cam_data[ind] += out_top;
-
3438 }
-
3439 } else {
-
3440 uint flag;
-
3441 context->getPrimitiveData(p, "twosided_flag", flag);
-
3442 if (flag) {
-
3443 flux_bottom.at(ind) += flux_top.at(ind);
-
3444 if( Ncameras>0 ) {
-
3445 scatter_buff_bottom_cam_data[ind] += out_top;
-
3446 }
-
3447 }
-
3448 }
-
3449 }
-
3450 }
+
3380 //If we are doing a diffuse/emission ray trace anyway and we have direct scattered energy, we get a "free" scattering trace here
+
3381 if( scatteringenabled && rundirect ){
+
3382 flux_top=getOptiXbufferData( scatter_buff_top_RTbuffer );
+
3383 flux_bottom=getOptiXbufferData( scatter_buff_bottom_RTbuffer );
+
3384 zeroBuffer1D( scatter_buff_top_RTbuffer, Nbands*Nprimitives );
+
3385 zeroBuffer1D( scatter_buff_bottom_RTbuffer, Nbands*Nprimitives );
+
3386 }
+
3387
+
3388 //add any emitted energy to the outgoing energy buffer
+
3389 if( emissionenabled ) {
+
3390 // Update primitive outgoing emission
+
3391 float eps, temperature;
+
3392
+
3393 void *ptr;
+
3394 float *scatter_buff_top_cam_data, *scatter_buff_bottom_cam_data;
+
3395 if( Ncameras>0 ){
+
3396 //add emitted flux to camera scattered energy buffer
+
3397 RT_CHECK_ERROR( rtBufferMap( scatter_buff_top_cam_RTbuffer, &ptr ) );
+
3398 scatter_buff_top_cam_data = (float*)ptr;
+
3399 RT_CHECK_ERROR( rtBufferMap( scatter_buff_bottom_cam_RTbuffer, &ptr ) );
+
3400 scatter_buff_bottom_cam_data = (float*)ptr;
+
3401 }
+
3402
+
3403 for (auto b = 0; b < Nbands; b++) {
+
3404 if (radiation_bands.at(label.at(b)).emissionFlag) {
+
3405 std::string prop = "emissivity_" + label.at(b);
+
3406 for (size_t u = 0; u < Nprimitives; u++) {
+
3407 size_t ind = u * Nbands + b;
+
3408 uint p = context_UUIDs.at(u);
+
3409 if (context->doesPrimitiveDataExist(p, prop.c_str())) {
+
3410 context->getPrimitiveData(p, prop.c_str(), eps);
+
3411 } else {
+
3412 eps = eps_default;
+
3413 }
+
3414 if (scattering_depth.at(b) == 0 && eps != 1.f) {
+
3415 eps = 1.f;
+
3416 }
+
3417 if (context->doesPrimitiveDataExist(p, "temperature")) {
+
3418 context->getPrimitiveData(p, "temperature", temperature);
+
3419 if (temperature < 0) {
+
3420 temperature = temperature_default;
+
3421 }
+
3422 } else {
+
3423 temperature = temperature_default;
+
3424 }
+
3425 float out_top = sigma * eps * pow(temperature, 4);
+
3426 flux_top.at(ind) += out_top;
+
3427 if( Ncameras>0 ) {
+
3428 scatter_buff_top_cam_data[ind] += out_top;
+
3429 }
+
3430 if (!context->doesPrimitiveDataExist(p, "twosided_flag")) { //if does not exist, assume two-sided
+
3431 flux_bottom.at(ind) += flux_top.at(ind);
+
3432 if( Ncameras>0 ) {
+
3433 scatter_buff_bottom_cam_data[ind] += out_top;
+
3434 }
+
3435 } else {
+
3436 uint flag;
+
3437 context->getPrimitiveData(p, "twosided_flag", flag);
+
3438 if (flag) {
+
3439 flux_bottom.at(ind) += flux_top.at(ind);
+
3440 if( Ncameras>0 ) {
+
3441 scatter_buff_bottom_cam_data[ind] += out_top;
+
3442 }
+
3443 }
+
3444 }
+
3445 }
+
3446 }
+
3447 }
+
3448 if( Ncameras>0 ){
+
3449 RT_CHECK_ERROR( rtBufferUnmap( scatter_buff_top_cam_RTbuffer ) );
+
3450 RT_CHECK_ERROR( rtBufferUnmap( scatter_buff_bottom_cam_RTbuffer ) );
3451 }
-
3452 if( Ncameras>0 ){
-
3453 RT_CHECK_ERROR( rtBufferUnmap( scatter_buff_top_cam_RTbuffer ) );
-
3454 RT_CHECK_ERROR( rtBufferUnmap( scatter_buff_bottom_cam_RTbuffer ) );
-
3455 }
-
3456 }
-
3457
-
3458 initializeBuffer1Df( radiation_out_top_RTbuffer, flux_top );
-
3459 initializeBuffer1Df( radiation_out_bottom_RTbuffer, flux_bottom );
-
3460
-
3461 // Compute diffuse launch dimension
-
3462 size_t n = ceil(sqrt(double(diffuseRayCount)));
+
3452 }
+
3453
+
3454 initializeBuffer1Df( radiation_out_top_RTbuffer, flux_top );
+
3455 initializeBuffer1Df( radiation_out_bottom_RTbuffer, flux_bottom );
+
3456
+
3457 // Compute diffuse launch dimension
+
3458 size_t n = ceil(sqrt(double(diffuseRayCount)));
+
3459
+
3460 size_t maxPrims = floor( float(maxRays)/float(n*n) );
+
3461
+
3462 int Nlaunches = ceil( n*n*Nobjects/float(maxRays) );
3463
-
3464 size_t maxPrims = floor( float(maxRays)/float(n*n) );
+
3464 size_t prims_per_launch = fmin( Nobjects, maxPrims );
3465
-
3466 int Nlaunches = ceil( n*n*Nobjects/float(maxRays) );
+
3466 for( uint launch=0; launch<Nlaunches; launch++ ){
3467
-
3468 size_t prims_per_launch = fmin( Nobjects, maxPrims );
-
3469
-
3470 for( uint launch=0; launch<Nlaunches; launch++ ){
-
3471
-
3472 size_t prims_this_launch;
-
3473 if( (launch+1)*prims_per_launch > Nobjects ){
-
3474 prims_this_launch = Nobjects-launch*prims_per_launch;
-
3475 }else{
-
3476 prims_this_launch = prims_per_launch;
-
3477 }
-
3478
-
3479 RT_CHECK_ERROR( rtVariableSet1ui( launch_offset_RTvariable, launch*prims_per_launch ) );
-
3480
-
3481 optix::int3 launch_dim_diff = optix::make_int3( round(n), round(n), prims_this_launch );
-
3482 assert( launch_dim_diff.x>0 && launch_dim_diff.y>0 );
-
3483
-
3484 if( message_flag ){
-
3485 std::cout << "Performing primary diffuse radiation ray trace for bands ";
-
3486 for( const auto &band : label ) {
-
3487 std::cout << band << " ";
-
3488 }
-
3489 std::cout << " (batch " << launch+1 << " of " << Nlaunches << ")..." << std::flush;
+
3468 size_t prims_this_launch;
+
3469 if( (launch+1)*prims_per_launch > Nobjects ){
+
3470 prims_this_launch = Nobjects-launch*prims_per_launch;
+
3471 }else{
+
3472 prims_this_launch = prims_per_launch;
+
3473 }
+
3474
+
3475 RT_CHECK_ERROR( rtVariableSet1ui( launch_offset_RTvariable, launch*prims_per_launch ) );
+
3476
+
3477 optix::int3 launch_dim_diff = optix::make_int3( round(n), round(n), prims_this_launch );
+
3478 assert( launch_dim_diff.x>0 && launch_dim_diff.y>0 );
+
3479
+
3480 if( message_flag ){
+
3481 std::cout << "Performing primary diffuse radiation ray trace for bands ";
+
3482 for( const auto &band : label ) {
+
3483 std::cout << band << " ";
+
3484 }
+
3485 std::cout << " (batch " << launch+1 << " of " << Nlaunches << ")..." << std::flush;
+
3486 }
+
3487 RT_CHECK_ERROR( rtContextLaunch3D( OptiX_Context, RAYTYPE_DIFFUSE , launch_dim_diff.x, launch_dim_diff.y, launch_dim_diff.z ) );
+
3488 if( message_flag ){
+
3489 std::cout << "\r \r" << std::flush;
3490 }
-
3491 RT_CHECK_ERROR( rtContextLaunch3D( OptiX_Context, RAYTYPE_DIFFUSE , launch_dim_diff.x, launch_dim_diff.y, launch_dim_diff.z ) );
-
3492 if( message_flag ){
-
3493 std::cout << "\r \r" << std::flush;
-
3494 }
-
3495 }
-
3496
-
3497 if( message_flag ){
-
3498 std::cout << "Performing primary diffuse radiation ray trace for bands ";
-
3499 for( const auto &band : label ) {
-
3500 std::cout << band << ", ";
-
3501 }
-
3502 std::cout << "...done." << std::endl;
-
3503 }
+
3491 }
+
3492
+
3493 if( message_flag ){
+
3494 std::cout << "Performing primary diffuse radiation ray trace for bands ";
+
3495 for( const auto &band : label ) {
+
3496 std::cout << band << ", ";
+
3497 }
+
3498 std::cout << "...done." << std::endl;
+
3499 }
+
3500
+
3501 }
+
3502
+
3503 if( scatteringenabled ){
3504
-
3505 }
-
3506
-
3507 if( scatteringenabled ){
-
3508
-
3509 for( auto b=0; b<Nbands; b++ ) {
-
3510 diffuse_flux.at(b) = 0.f;
-
3511 }
-
3512 initializeBuffer1Df( diffuse_flux_RTbuffer, diffuse_flux );
+
3505 for( auto b=0; b<Nbands; b++ ) {
+
3506 diffuse_flux.at(b) = 0.f;
+
3507 }
+
3508 initializeBuffer1Df( diffuse_flux_RTbuffer, diffuse_flux );
+
3509
+
3510 size_t n = ceil(sqrt(double(diffuseRayCount)));
+
3511
+
3512 size_t maxPrims = floor( float(maxRays)/float(n*n) );
3513
-
3514 size_t n = ceil(sqrt(double(diffuseRayCount)));
+
3514 int Nlaunches = ceil( n*n*Nobjects/float(maxRays) );
3515
-
3516 size_t maxPrims = floor( float(maxRays)/float(n*n) );
+
3516 size_t prims_per_launch = fmin( Nobjects, maxPrims );
3517
-
3518 int Nlaunches = ceil( n*n*Nobjects/float(maxRays) );
-
3519
-
3520 size_t prims_per_launch = fmin( Nobjects, maxPrims );
-
3521
-
3522 uint s;
-
3523 for( s=0; s<scatteringDepth; s++ ){
-
3524 if( message_flag ){
-
3525 std::cout << "Performing scattering ray trace (iteration " << s+1 << " of " << scatteringDepth << ")..." << std::flush;
-
3526 }
-
3527
-
3528 for( uint b=0; b<Nbands; b++ ){
-
3529 uint depth = radiation_bands.at(label.at(b)).scatteringDepth;
-
3530 if( s+1>depth ) {
-
3531 if( message_flag ) {
-
3532 std::cout << "Skipping band " << label.at(b) << " for scattering launch " << s + 1 << std::flush;
-
3533 }
-
3534 band_launch_flag.at(b) = 0;
-
3535 }else{
-
3536 band_launch_flag.at(b) = 1;
-
3537 }
-
3538 }
-
3539 initializeBuffer1Dchar( band_launch_flag_RTbuffer, band_launch_flag );
-
3540
-
3541// TBS_top=getOptiXbufferData( scatter_buff_top_RTbuffer );
-
3542// TBS_bottom=getOptiXbufferData( scatter_buff_bottom_RTbuffer );
-
3543// float TBS_max = 0;
-
3544// for( size_t u=0; u<Nprimitives*Nbands; u++ ){
-
3545// if( TBS_top.at(u)+TBS_bottom.at(u)>TBS_max ){
-
3546// TBS_max = TBS_top.at(u)+TBS_bottom.at(u);
-
3547// }
-
3548// }
-
3549
-
3550 copyBuffer1D( scatter_buff_top_RTbuffer, radiation_out_top_RTbuffer );
-
3551 zeroBuffer1D( scatter_buff_top_RTbuffer, Nbands*Nprimitives );
-
3552 copyBuffer1D( scatter_buff_bottom_RTbuffer, radiation_out_bottom_RTbuffer );
-
3553 zeroBuffer1D( scatter_buff_bottom_RTbuffer, Nbands*Nprimitives );
-
3554
-
3555 for( uint launch=0; launch<Nlaunches; launch++ ){
-
3556
-
3557 size_t prims_this_launch;
-
3558 if( (launch+1)*prims_per_launch > Nobjects ){
-
3559 prims_this_launch = Nobjects-launch*prims_per_launch;
-
3560 }else{
-
3561 prims_this_launch = prims_per_launch;
-
3562 }
-
3563 optix::int3 launch_dim_diff = optix::make_int3( round(n), round(n), prims_this_launch );
+
3518 uint s;
+
3519 for( s=0; s<scatteringDepth; s++ ){
+
3520 if( message_flag ){
+
3521 std::cout << "Performing scattering ray trace (iteration " << s+1 << " of " << scatteringDepth << ")..." << std::flush;
+
3522 }
+
3523
+
3524 for( uint b=0; b<Nbands; b++ ){
+
3525 uint depth = radiation_bands.at(label.at(b)).scatteringDepth;
+
3526 if( s+1>depth ) {
+
3527 if( message_flag ) {
+
3528 std::cout << "Skipping band " << label.at(b) << " for scattering launch " << s + 1 << std::flush;
+
3529 }
+
3530 band_launch_flag.at(b) = 0;
+
3531 }else{
+
3532 band_launch_flag.at(b) = 1;
+
3533 }
+
3534 }
+
3535 initializeBuffer1Dchar( band_launch_flag_RTbuffer, band_launch_flag );
+
3536
+
3537// TBS_top=getOptiXbufferData( scatter_buff_top_RTbuffer );
+
3538// TBS_bottom=getOptiXbufferData( scatter_buff_bottom_RTbuffer );
+
3539// float TBS_max = 0;
+
3540// for( size_t u=0; u<Nprimitives*Nbands; u++ ){
+
3541// if( TBS_top.at(u)+TBS_bottom.at(u)>TBS_max ){
+
3542// TBS_max = TBS_top.at(u)+TBS_bottom.at(u);
+
3543// }
+
3544// }
+
3545
+
3546 copyBuffer1D( scatter_buff_top_RTbuffer, radiation_out_top_RTbuffer );
+
3547 zeroBuffer1D( scatter_buff_top_RTbuffer, Nbands*Nprimitives );
+
3548 copyBuffer1D( scatter_buff_bottom_RTbuffer, radiation_out_bottom_RTbuffer );
+
3549 zeroBuffer1D( scatter_buff_bottom_RTbuffer, Nbands*Nprimitives );
+
3550
+
3551 for( uint launch=0; launch<Nlaunches; launch++ ){
+
3552
+
3553 size_t prims_this_launch;
+
3554 if( (launch+1)*prims_per_launch > Nobjects ){
+
3555 prims_this_launch = Nobjects-launch*prims_per_launch;
+
3556 }else{
+
3557 prims_this_launch = prims_per_launch;
+
3558 }
+
3559 optix::int3 launch_dim_diff = optix::make_int3( round(n), round(n), prims_this_launch );
+
3560
+
3561 RT_CHECK_ERROR( rtVariableSet1ui( launch_offset_RTvariable, launch*prims_per_launch ) );
+
3562
+
3563 RT_CHECK_ERROR( rtContextLaunch3D( OptiX_Context, RAYTYPE_DIFFUSE , launch_dim_diff.x, launch_dim_diff.y, launch_dim_diff.z ) );
3564
-
3565 RT_CHECK_ERROR( rtVariableSet1ui( launch_offset_RTvariable, launch*prims_per_launch ) );
-
3566
-
3567 RT_CHECK_ERROR( rtContextLaunch3D( OptiX_Context, RAYTYPE_DIFFUSE , launch_dim_diff.x, launch_dim_diff.y, launch_dim_diff.z ) );
-
3568
-
3569 }
-
3570 if( message_flag ){
-
3571 std::cout << "\r \r" << std::flush;
-
3572 }
-
3573
+
3565 }
+
3566 if( message_flag ){
+
3567 std::cout << "\r \r" << std::flush;
+
3568 }
+
3569
+
3570 }
+
3571
+
3572 if( message_flag ){
+
3573 std::cout << "Performing scattering ray trace...done." << std::endl;
3574 }
3575
-
3576 if( message_flag ){
-
3577 std::cout << "Performing scattering ray trace...done." << std::endl;
-
3578 }
-
3579
-
3580 }
-
3581
-
3582 // **** CAMERA RAY TRACE **** //
-
3583 if( Ncameras>0 ){
+
3576 }
+
3577
+
3578 // **** CAMERA RAY TRACE **** //
+
3579 if( Ncameras>0 ){
+
3580
+
3581 //re-set outgoing radiation buffers
+
3582 copyBuffer1D( scatter_buff_top_cam_RTbuffer, radiation_out_top_RTbuffer );
+
3583 copyBuffer1D( scatter_buff_bottom_cam_RTbuffer, radiation_out_bottom_RTbuffer );
3584
-
3585 //re-set outgoing radiation buffers
-
3586 copyBuffer1D( scatter_buff_top_cam_RTbuffer, radiation_out_top_RTbuffer );
-
3587 copyBuffer1D( scatter_buff_bottom_cam_RTbuffer, radiation_out_bottom_RTbuffer );
-
3588
-
3589 //re-set diffuse radiation fluxes
-
3590 if( diffuseenabled ){
-
3591 for( auto b=0; b<Nbands; b++ ){
-
3592 diffuse_flux.at(b) = getDiffuseFlux(label.at(b));
-
3593 }
-
3594 initializeBuffer1Df( diffuse_flux_RTbuffer, diffuse_flux );
-
3595 }
-
3596
-
3597
-
3598 size_t n = ceil(sqrt(double(diffuseRayCount)));
-
3599
-
3600 uint cam=0;
-
3601 for( auto & camera : cameras ){
-
3602
-
3603 //set variable values
-
3604 RT_CHECK_ERROR( rtVariableSet3f( camera_position_RTvariable, camera.second.position.x, camera.second.position.y, camera.second.position.z ) );
-
3605 helios::SphericalCoord dir = cart2sphere( camera.second.lookat - camera.second.position );
-
3606 RT_CHECK_ERROR( rtVariableSet2f( camera_direction_RTvariable, dir.zenith, dir.azimuth ) );
-
3607 RT_CHECK_ERROR( rtVariableSet1f( camera_lens_diameter_RTvariable, camera.second.lens_diameter ) );
-
3608 RT_CHECK_ERROR( rtVariableSet1f( FOV_aspect_RTvariable, camera.second.FOV_aspect_ratio ) );
-
3609 RT_CHECK_ERROR( rtVariableSet1f( camera_focal_length_RTvariable, camera.second.focal_length ) );
-
3610 RT_CHECK_ERROR( rtVariableSet1f( camera_viewplane_length_RTvariable, 1.f/tanf(camera.second.HFOV_degrees*M_PI/180.f) ) );
-
3611 RT_CHECK_ERROR( rtVariableSet1ui( camera_ID_RTvariable, cam ));
+
3585 //re-set diffuse radiation fluxes
+
3586 if( diffuseenabled ){
+
3587 for( auto b=0; b<Nbands; b++ ){
+
3588 diffuse_flux.at(b) = getDiffuseFlux(label.at(b));
+
3589 }
+
3590 initializeBuffer1Df( diffuse_flux_RTbuffer, diffuse_flux );
+
3591 }
+
3592
+
3593
+
3594 size_t n = ceil(sqrt(double(diffuseRayCount)));
+
3595
+
3596 uint cam=0;
+
3597 for( auto & camera : cameras ){
+
3598
+
3599 //set variable values
+
3600 RT_CHECK_ERROR( rtVariableSet3f( camera_position_RTvariable, camera.second.position.x, camera.second.position.y, camera.second.position.z ) );
+
3601 helios::SphericalCoord dir = cart2sphere( camera.second.lookat - camera.second.position );
+
3602 RT_CHECK_ERROR( rtVariableSet2f( camera_direction_RTvariable, dir.zenith, dir.azimuth ) );
+
3603 RT_CHECK_ERROR( rtVariableSet1f( camera_lens_diameter_RTvariable, camera.second.lens_diameter ) );
+
3604 RT_CHECK_ERROR( rtVariableSet1f( FOV_aspect_RTvariable, camera.second.FOV_aspect_ratio ) );
+
3605 RT_CHECK_ERROR( rtVariableSet1f( camera_focal_length_RTvariable, camera.second.focal_length ) );
+
3606 RT_CHECK_ERROR( rtVariableSet1f( camera_viewplane_length_RTvariable, 1.f/tanf(camera.second.HFOV_degrees*M_PI/180.f) ) );
+
3607 RT_CHECK_ERROR( rtVariableSet1ui( camera_ID_RTvariable, cam ));
+
3608
+
3609 zeroBuffer1D( radiation_in_camera_RTbuffer, camera.second.resolution.x*camera.second.resolution.y*Nbands );
+
3610
+
3611 optix::int3 launch_dim_camera = optix::make_int3( camera.second.antialiasing_samples, camera.second.resolution.x, camera.second.resolution.y );
3612
-
3613 zeroBuffer1D( radiation_in_camera_RTbuffer, camera.second.resolution.x*camera.second.resolution.y*Nbands );
-
3614
-
3615 optix::int3 launch_dim_camera = optix::make_int3( camera.second.antialiasing_samples, camera.second.resolution.x, camera.second.resolution.y );
-
3616
+
3613 if( message_flag ){
+
3614 std::cout << "Performing scattering radiation camera ray trace for camera " << camera.second.label << "..." << std::flush;
+
3615 }
+
3616 RT_CHECK_ERROR( rtContextLaunch3D( OptiX_Context, RAYTYPE_CAMERA , launch_dim_camera.x, launch_dim_camera.y, launch_dim_camera.z ) );
3617 if( message_flag ){
-
3618 std::cout << "Performing scattering radiation camera ray trace for camera " << camera.second.label << "..." << std::flush;
+
3618 std::cout << "done." << std::endl;
3619 }
-
3620 RT_CHECK_ERROR( rtContextLaunch3D( OptiX_Context, RAYTYPE_CAMERA , launch_dim_camera.x, launch_dim_camera.y, launch_dim_camera.z ) );
-
3621 if( message_flag ){
-
3622 std::cout << "done." << std::endl;
-
3623 }
+
3620
+
3621 std::vector<float> radiation_camera = getOptiXbufferData(radiation_in_camera_RTbuffer);
+
3622
+
3623 std::string camera_label = camera.second.label;
3624
-
3625 std::vector<float> radiation_camera = getOptiXbufferData(radiation_in_camera_RTbuffer);
+
3625 for( auto b=0; b<Nbands; b++ ) {
3626
-
3627 std::string camera_label = camera.second.label;
+
3627 camera.second.pixel_data[label.at(b)].resize(camera.second.resolution.x*camera.second.resolution.y);
3628
-
3629 for( auto b=0; b<Nbands; b++ ) {
+
3629 std::string data_label = "camera_" + camera_label + "_" + label.at(b);
3630
-
3631 camera.second.pixel_data[label.at(b)].resize(camera.second.resolution.x*camera.second.resolution.y);
-
3632
-
3633 std::string data_label = "camera_" + camera_label + "_" + label.at(b);
+
3631 for( auto p=0; p<camera.second.resolution.x*camera.second.resolution.y; p++ ){
+
3632 camera.second.pixel_data.at(label.at(b)).at(p) = radiation_camera.at(p*Nbands+b);
+
3633 }
3634
-
3635 for( auto p=0; p<camera.second.resolution.x*camera.second.resolution.y; p++ ){
-
3636 camera.second.pixel_data.at(label.at(b)).at(p) = radiation_camera.at(p*Nbands+b);
-
3637 }
+
3635 context->setGlobalData(data_label.c_str(), HELIOS_TYPE_FLOAT,camera.second.resolution.x*camera.second.resolution.y,&camera.second.pixel_data.at(label.at(b))[0]);
+
3636
+
3637 }
3638
-
3639 context->setGlobalData(data_label.c_str(), HELIOS_TYPE_FLOAT,camera.second.resolution.x*camera.second.resolution.y,&camera.second.pixel_data.at(label.at(b))[0]);
+
3639 //--- Pixel Labeling Trace ---//
3640
-
3641 }
-
3642
-
3643 //--- Pixel Labeling Trace ---//
-
3644
-
3645 zeroBuffer1D(camera_pixel_label_RTbuffer,camera.second.resolution.x*camera.second.resolution.y);
-
3646 zeroBuffer1D(camera_pixel_depth_RTbuffer,camera.second.resolution.x*camera.second.resolution.y);
-
3647
+
3641 zeroBuffer1D(camera_pixel_label_RTbuffer,camera.second.resolution.x*camera.second.resolution.y);
+
3642 zeroBuffer1D(camera_pixel_depth_RTbuffer,camera.second.resolution.x*camera.second.resolution.y);
+
3643
+
3644 if( message_flag ){
+
3645 std::cout << "Performing camera pixel labeling ray trace for camera " << camera.second.label << "..." << std::flush;
+
3646 }
+
3647 RT_CHECK_ERROR( rtContextLaunch3D( OptiX_Context, RAYTYPE_PIXEL_LABEL , 1, launch_dim_camera.y, launch_dim_camera.z ) );
3648 if( message_flag ){
-
3649 std::cout << "Performing camera pixel labeling ray trace for camera " << camera.second.label << "..." << std::flush;
+
3649 std::cout << "done." << std::endl;
3650 }
-
3651 RT_CHECK_ERROR( rtContextLaunch3D( OptiX_Context, RAYTYPE_PIXEL_LABEL , 1, launch_dim_camera.y, launch_dim_camera.z ) );
-
3652 if( message_flag ){
-
3653 std::cout << "done." << std::endl;
-
3654 }
-
3655
-
3656 camera.second.pixel_label_UUID = getOptiXbufferData_ui(camera_pixel_label_RTbuffer);
-
3657 camera.second.pixel_depth = getOptiXbufferData(camera_pixel_depth_RTbuffer);
-
3658
-
3659 //the IDs from the ray trace do not necessarily correspond to the actual primitive UUIDs, so look them up.
-
3660 for( uint ID=0; ID<camera.second.pixel_label_UUID.size(); ID++ ){
-
3661 if( camera.second.pixel_label_UUID.at(ID)>0 ){
-
3662 camera.second.pixel_label_UUID.at(ID) = context_UUIDs.at(camera.second.pixel_label_UUID.at(ID) - 1) + 1;
-
3663 }
-
3664 }
+
3651
+
3652 camera.second.pixel_label_UUID = getOptiXbufferData_ui(camera_pixel_label_RTbuffer);
+
3653 camera.second.pixel_depth = getOptiXbufferData(camera_pixel_depth_RTbuffer);
+
3654
+
3655 //the IDs from the ray trace do not necessarily correspond to the actual primitive UUIDs, so look them up.
+
3656 for( uint ID=0; ID<camera.second.pixel_label_UUID.size(); ID++ ){
+
3657 if( camera.second.pixel_label_UUID.at(ID)>0 ){
+
3658 camera.second.pixel_label_UUID.at(ID) = context_UUIDs.at(camera.second.pixel_label_UUID.at(ID) - 1) + 1;
+
3659 }
+
3660 }
+
3661
+
3662 std::string data_label = "camera_" + camera_label + "_pixel_UUID";
+
3663
+
3664 context->setGlobalData(data_label.c_str(), HELIOS_TYPE_UINT,camera.second.resolution.x*camera.second.resolution.y,&camera.second.pixel_label_UUID[0]);
3665
-
3666 std::string data_label = "camera_" + camera_label + "_pixel_UUID";
+
3666 data_label = "camera_" + camera_label + "_pixel_depth";
3667
-
3668 context->setGlobalData(data_label.c_str(), HELIOS_TYPE_UINT,camera.second.resolution.x*camera.second.resolution.y,&camera.second.pixel_label_UUID[0]);
+
3668 context->setGlobalData(data_label.c_str(), HELIOS_TYPE_FLOAT,camera.second.resolution.x*camera.second.resolution.y,&camera.second.pixel_depth[0]);
3669
-
3670 data_label = "camera_" + camera_label + "_pixel_depth";
-
3671
-
3672 context->setGlobalData(data_label.c_str(), HELIOS_TYPE_FLOAT,camera.second.resolution.x*camera.second.resolution.y,&camera.second.pixel_depth[0]);
+
3670 cam++;
+
3671 }
+
3672 }
3673
-
3674 cam++;
-
3675 }
-
3676 }
+
3674 //deposit any energy that is left to make sure we satisfy conservation of energy
+
3675 TBS_top=getOptiXbufferData( scatter_buff_top_RTbuffer );
+
3676 TBS_bottom=getOptiXbufferData( scatter_buff_bottom_RTbuffer );
3677
-
3678 //deposit any energy that is left to make sure we satisfy conservation of energy
-
3679 TBS_top=getOptiXbufferData( scatter_buff_top_RTbuffer );
-
3680 TBS_bottom=getOptiXbufferData( scatter_buff_bottom_RTbuffer );
-
3681
-
3682 // Set variables in geometric objects
-
3683
-
3684 std::vector<float> radiation_flux_data;
-
3685 radiation_flux_data=getOptiXbufferData( radiation_in_RTbuffer );
+
3678 // Set variables in geometric objects
+
3679
+
3680 std::vector<float> radiation_flux_data;
+
3681 radiation_flux_data=getOptiXbufferData( radiation_in_RTbuffer );
+
3682
+
3683 std::vector<uint> UUIDs_context_all = context->getAllUUIDs();
+
3684
+
3685 for( auto b=0; b<Nbands; b++ ) {
3686
-
3687 std::vector<uint> UUIDs_context_all = context->getAllUUIDs();
-
3688
-
3689 for( auto b=0; b<Nbands; b++ ) {
-
3690
-
3691 std::string prop = "radiation_flux_" + label.at(b);
-
3692 for (size_t u = 0; u < Nprimitives; u++) {
-
3693 size_t ind = u * Nbands + b;
-
3694 float R = radiation_flux_data.at(ind) + TBS_top.at(ind) + TBS_bottom.at(ind);
-
3695 context->setPrimitiveData(context_UUIDs.at(u), prop.c_str(), R);
-
3696 if (radiation_flux_data.at(ind) != radiation_flux_data.at(ind)) {
-
3697 std::cout << "NaN here " << ind << std::endl;
-
3698 }
-
3699 }
-
3700
-
3701 if( UUIDs_context_all.size()!=Nprimitives ){
-
3702 for( uint UUID : UUIDs_context_all ){
-
3703 if( context->doesPrimitiveExist(UUID) && !context->doesPrimitiveDataExist(UUID,prop.c_str()) ){
-
3704 context->setPrimitiveData(UUID,prop.c_str(),0.f);
-
3705 }
-
3706 }
-
3707 }
+
3687 std::string prop = "radiation_flux_" + label.at(b);
+
3688 for (size_t u = 0; u < Nprimitives; u++) {
+
3689 size_t ind = u * Nbands + b;
+
3690 float R = radiation_flux_data.at(ind) + TBS_top.at(ind) + TBS_bottom.at(ind);
+
3691 context->setPrimitiveData(context_UUIDs.at(u), prop.c_str(), R);
+
3692 if (radiation_flux_data.at(ind) != radiation_flux_data.at(ind)) {
+
3693 std::cout << "NaN here " << ind << std::endl;
+
3694 }
+
3695 }
+
3696
+
3697 if( UUIDs_context_all.size()!=Nprimitives ){
+
3698 for( uint UUID : UUIDs_context_all ){
+
3699 if( context->doesPrimitiveExist(UUID) && !context->doesPrimitiveDataExist(UUID,prop.c_str()) ){
+
3700 context->setPrimitiveData(UUID,prop.c_str(),0.f);
+
3701 }
+
3702 }
+
3703 }
+
3704
+
3705 }
+
3706
+
3707}
+
3708
-
3709 }
+
+
3709float RadiationModel::getSkyEnergy() {
3710
-
3711}
+
3711 std::vector<float> Rsky_SW;
+
3712 Rsky_SW=getOptiXbufferData( Rsky_RTbuffer );
+
3713 float Rsky=0.f;
+
3714 for( size_t i=0; i<Rsky_SW.size(); i++ ){
+
3715 Rsky += Rsky_SW.at(i);
+
3716 }
+
3717 return Rsky;
+
3718
+
3719}
-
3712
-
-
3713float RadiationModel::getSkyEnergy() {
-
3714
-
3715 std::vector<float> Rsky_SW;
-
3716 Rsky_SW=getOptiXbufferData( Rsky_RTbuffer );
-
3717 float Rsky=0.f;
-
3718 for( size_t i=0; i<Rsky_SW.size(); i++ ){
-
3719 Rsky += Rsky_SW.at(i);
-
3720 }
-
3721 return Rsky;
+
3720
+
+
3721std::vector<float> RadiationModel::getTotalAbsorbedFlux() {
3722
-
3723}
-
-
3724
-
-
3725std::vector<float> RadiationModel::getTotalAbsorbedFlux() {
-
3726
-
3727 std::vector<float> total_flux;
-
3728 total_flux.resize(context->getPrimitiveCount(),0.f);
+
3723 std::vector<float> total_flux;
+
3724 total_flux.resize(context->getPrimitiveCount(),0.f);
+
3725
+
3726 for( const auto &band : radiation_bands ){
+
3727
+
3728 std::string label = band.first;
3729
-
3730 for( const auto &band : radiation_bands ){
+
3730 for( size_t u=0; u<context_UUIDs.size(); u++ ){
3731
-
3732 std::string label = band.first;
+
3732 uint p = context_UUIDs.at(u);
3733
-
3734 for( size_t u=0; u<context_UUIDs.size(); u++ ){
+
3734 std::string str = "radiation_flux_" + label;
3735
-
3736 uint p = context_UUIDs.at(u);
-
3737
-
3738 std::string str = "radiation_flux_" + label;
+
3736 float R;
+
3737 context->getPrimitiveData( p, str.c_str(), R );
+
3738 total_flux.at(u) += R;
3739
-
3740 float R;
-
3741 context->getPrimitiveData( p, str.c_str(), R );
-
3742 total_flux.at(u) += R;
+
3740 }
+
3741
+
3742 }
3743
-
3744 }
+
3744 return total_flux;
3745
-
3746 }
+
3746}
+
3747
-
3748 return total_flux;
+
3748std::vector<float> RadiationModel::getOptiXbufferData( RTbuffer buffer ){
3749
-
3750}
-
-
3751
-
3752std::vector<float> RadiationModel::getOptiXbufferData( RTbuffer buffer ){
+
3750 void* _data_;
+
3751 RT_CHECK_ERROR( rtBufferMap( buffer, &_data_ ) );
+
3752 float* data_ptr = (float*)_data_;
3753
-
3754 void* _data_;
-
3755 RT_CHECK_ERROR( rtBufferMap( buffer, &_data_ ) );
-
3756 float* data_ptr = (float*)_data_;
-
3757
-
3758 RTsize size;
-
3759 RT_CHECK_ERROR( rtBufferGetSize1D( buffer, &size ) );
-
3760
-
3761 std::vector<float> data_vec;
-
3762 data_vec.resize(size);
-
3763 for( int i=0; i<size; i++ ){
-
3764 data_vec.at(i)=data_ptr[i];
-
3765 }
+
3754 RTsize size;
+
3755 RT_CHECK_ERROR( rtBufferGetSize1D( buffer, &size ) );
+
3756
+
3757 std::vector<float> data_vec;
+
3758 data_vec.resize(size);
+
3759 for( int i=0; i<size; i++ ){
+
3760 data_vec.at(i)=data_ptr[i];
+
3761 }
+
3762
+
3763 RT_CHECK_ERROR( rtBufferUnmap( buffer ) );
+
3764
+
3765 return data_vec;
3766
-
3767 RT_CHECK_ERROR( rtBufferUnmap( buffer ) );
+
3767}
3768
-
3769 return data_vec;
+
3769std::vector<double> RadiationModel::getOptiXbufferData_d( RTbuffer buffer ){
3770
-
3771}
-
3772
-
3773std::vector<double> RadiationModel::getOptiXbufferData_d( RTbuffer buffer ){
+
3771 void* _data_;
+
3772 RT_CHECK_ERROR( rtBufferMap( buffer, &_data_ ) );
+
3773 double* data_ptr = (double*)_data_;
3774
-
3775 void* _data_;
-
3776 RT_CHECK_ERROR( rtBufferMap( buffer, &_data_ ) );
-
3777 double* data_ptr = (double*)_data_;
-
3778
-
3779 RTsize size;
-
3780 RT_CHECK_ERROR( rtBufferGetSize1D( buffer, &size ) );
-
3781
-
3782 std::vector<double> data_vec;
-
3783 data_vec.resize(size);
-
3784 for( int i=0; i<size; i++ ){
-
3785 data_vec.at(i)=data_ptr[i];
-
3786 }
+
3775 RTsize size;
+
3776 RT_CHECK_ERROR( rtBufferGetSize1D( buffer, &size ) );
+
3777
+
3778 std::vector<double> data_vec;
+
3779 data_vec.resize(size);
+
3780 for( int i=0; i<size; i++ ){
+
3781 data_vec.at(i)=data_ptr[i];
+
3782 }
+
3783
+
3784 RT_CHECK_ERROR( rtBufferUnmap( buffer ) );
+
3785
+
3786 return data_vec;
3787
-
3788 RT_CHECK_ERROR( rtBufferUnmap( buffer ) );
+
3788}
3789
-
3790 return data_vec;
+
3790std::vector<uint> RadiationModel::getOptiXbufferData_ui( RTbuffer buffer ){
3791
-
3792}
-
3793
-
3794std::vector<uint> RadiationModel::getOptiXbufferData_ui( RTbuffer buffer ){
+
3792 void* _data_;
+
3793 RT_CHECK_ERROR( rtBufferMap( buffer, &_data_ ) );
+
3794 uint* data_ptr = (uint*)_data_;
3795
-
3796 void* _data_;
-
3797 RT_CHECK_ERROR( rtBufferMap( buffer, &_data_ ) );
-
3798 uint* data_ptr = (uint*)_data_;
-
3799
-
3800 RTsize size;
-
3801 RT_CHECK_ERROR( rtBufferGetSize1D( buffer, &size ) );
-
3802
-
3803 std::vector<uint> data_vec;
-
3804 data_vec.resize(size);
-
3805 for( int i=0; i<size; i++ ){
-
3806 data_vec.at(i)=data_ptr[i];
-
3807 }
+
3796 RTsize size;
+
3797 RT_CHECK_ERROR( rtBufferGetSize1D( buffer, &size ) );
+
3798
+
3799 std::vector<uint> data_vec;
+
3800 data_vec.resize(size);
+
3801 for( int i=0; i<size; i++ ){
+
3802 data_vec.at(i)=data_ptr[i];
+
3803 }
+
3804
+
3805 RT_CHECK_ERROR( rtBufferUnmap( buffer ) );
+
3806
+
3807 return data_vec;
3808
-
3809 RT_CHECK_ERROR( rtBufferUnmap( buffer ) );
+
3809}
3810
-
3811 return data_vec;
+
3811void RadiationModel::addBuffer( const char* name, RTbuffer& buffer, RTvariable& variable, RTbuffertype type, RTformat format, size_t dimension ){
3812
-
3813}
-
3814
-
3815void RadiationModel::addBuffer( const char* name, RTbuffer& buffer, RTvariable& variable, RTbuffertype type, RTformat format, size_t dimension ){
-
3816
-
3817 RT_CHECK_ERROR( rtBufferCreate( OptiX_Context, type, &buffer ) );
-
3818 RT_CHECK_ERROR( rtBufferSetFormat( buffer, format ) );
-
3819 RT_CHECK_ERROR( rtContextDeclareVariable( OptiX_Context, name, &variable ) );
-
3820 RT_CHECK_ERROR( rtVariableSetObject( variable, buffer ) );
-
3821 if( dimension==1 ){
-
3822 zeroBuffer1D( buffer, 1 );
-
3823 }else if( dimension==2 ){
-
3824 zeroBuffer2D( buffer, optix::make_int2(1,1) );
-
3825 }else{
-
3826 helios_runtime_error("ERROR (RadiationModel::addBuffer): invalid buffer dimension of " + std::to_string(dimension) + ", must be 1 or 2.");
-
3827 }
+
3813 RT_CHECK_ERROR( rtBufferCreate( OptiX_Context, type, &buffer ) );
+
3814 RT_CHECK_ERROR( rtBufferSetFormat( buffer, format ) );
+
3815 RT_CHECK_ERROR( rtContextDeclareVariable( OptiX_Context, name, &variable ) );
+
3816 RT_CHECK_ERROR( rtVariableSetObject( variable, buffer ) );
+
3817 if( dimension==1 ){
+
3818 zeroBuffer1D( buffer, 1 );
+
3819 }else if( dimension==2 ){
+
3820 zeroBuffer2D( buffer, optix::make_int2(1,1) );
+
3821 }else{
+
3822 helios_runtime_error("ERROR (RadiationModel::addBuffer): invalid buffer dimension of " + std::to_string(dimension) + ", must be 1 or 2.");
+
3823 }
+
3824
+
3825}
+
3826
+
3827void RadiationModel::zeroBuffer1D(RTbuffer &buffer, size_t bsize ){
3828
-
3829}
-
3830
-
3831void RadiationModel::zeroBuffer1D(RTbuffer &buffer, size_t bsize ){
+
3829 //get buffer format
+
3830 RTformat format;
+
3831 RT_CHECK_ERROR( rtBufferGetFormat( buffer, &format ) );
3832
-
3833 //get buffer format
-
3834 RTformat format;
-
3835 RT_CHECK_ERROR( rtBufferGetFormat( buffer, &format ) );
-
3836
-
3837 if( format==RT_FORMAT_USER ){//Note: for now, assume user format means it's a double
-
3838
-
3839 std::vector<double> array;
-
3840 array.resize(bsize);
-
3841 for( int i=0; i<bsize; i++ ){
-
3842 array.at(i)=0.f;
-
3843 }
+
3833 if( format==RT_FORMAT_USER ){//Note: for now, assume user format means it's a double
+
3834
+
3835 std::vector<double> array;
+
3836 array.resize(bsize);
+
3837 for( int i=0; i<bsize; i++ ){
+
3838 array.at(i)=0.f;
+
3839 }
+
3840
+
3841 initializeBuffer1Dd( buffer, array );
+
3842
+
3843 }else if( format==RT_FORMAT_FLOAT ){
3844
-
3845 initializeBuffer1Dd( buffer, array );
-
3846
-
3847 }else if( format==RT_FORMAT_FLOAT ){
-
3848
-
3849 std::vector<float> array;
-
3850 array.resize(bsize);
-
3851 for( int i=0; i<bsize; i++ ){
-
3852 array.at(i)=0.f;
-
3853 }
+
3845 std::vector<float> array;
+
3846 array.resize(bsize);
+
3847 for( int i=0; i<bsize; i++ ){
+
3848 array.at(i)=0.f;
+
3849 }
+
3850
+
3851 initializeBuffer1Df( buffer, array );
+
3852
+
3853 }else if( format==RT_FORMAT_FLOAT2 ){
3854
-
3855 initializeBuffer1Df( buffer, array );
-
3856
-
3857 }else if( format==RT_FORMAT_FLOAT2 ){
-
3858
-
3859 std::vector<optix::float2> array;
-
3860 array.resize(bsize);
-
3861 for( int i=0; i<bsize; i++ ){
-
3862 array.at(i)=optix::make_float2(0,0);
-
3863 }
+
3855 std::vector<optix::float2> array;
+
3856 array.resize(bsize);
+
3857 for( int i=0; i<bsize; i++ ){
+
3858 array.at(i)=optix::make_float2(0,0);
+
3859 }
+
3860
+
3861 initializeBuffer1Dfloat2( buffer, array );
+
3862
+
3863 }else if( format==RT_FORMAT_FLOAT3 ){
3864
-
3865 initializeBuffer1Dfloat2( buffer, array );
-
3866
-
3867 }else if( format==RT_FORMAT_FLOAT3 ){
-
3868
-
3869 std::vector<optix::float3> array;
-
3870 array.resize(bsize);
-
3871 for( int i=0; i<bsize; i++ ){
-
3872 array.at(i)=optix::make_float3(0,0,0);
-
3873 }
+
3865 std::vector<optix::float3> array;
+
3866 array.resize(bsize);
+
3867 for( int i=0; i<bsize; i++ ){
+
3868 array.at(i)=optix::make_float3(0,0,0);
+
3869 }
+
3870
+
3871 initializeBuffer1Dfloat3( buffer, array );
+
3872
+
3873 }else if( format==RT_FORMAT_INT ){
3874
-
3875 initializeBuffer1Dfloat3( buffer, array );
-
3876
-
3877 }else if( format==RT_FORMAT_INT ){
-
3878
-
3879 std::vector<int> array;
-
3880 array.resize(bsize);
-
3881 for( int i=0; i<bsize; i++ ){
-
3882 array.at(i)=0;
-
3883 }
+
3875 std::vector<int> array;
+
3876 array.resize(bsize);
+
3877 for( int i=0; i<bsize; i++ ){
+
3878 array.at(i)=0;
+
3879 }
+
3880
+
3881 initializeBuffer1Di( buffer, array );
+
3882
+
3883 }else if( format==RT_FORMAT_INT2 ){
3884
-
3885 initializeBuffer1Di( buffer, array );
-
3886
-
3887 }else if( format==RT_FORMAT_INT2 ){
-
3888
-
3889 std::vector<optix::int2> array;
-
3890 array.resize(bsize);
-
3891 for( int i=0; i<bsize; i++ ){
-
3892 array.at(i)=optix::make_int2(0,0);
-
3893 }
+
3885 std::vector<optix::int2> array;
+
3886 array.resize(bsize);
+
3887 for( int i=0; i<bsize; i++ ){
+
3888 array.at(i)=optix::make_int2(0,0);
+
3889 }
+
3890
+
3891 initializeBuffer1Dint2( buffer, array );
+
3892
+
3893 }else if( format==RT_FORMAT_INT3 ){
3894
-
3895 initializeBuffer1Dint2( buffer, array );
-
3896
-
3897 }else if( format==RT_FORMAT_INT3 ){
-
3898
-
3899 std::vector<optix::int3> array;
-
3900 array.resize(bsize);
-
3901 for( int i=0; i<bsize; i++ ){
-
3902 array.at(i)=optix::make_int3(0,0,0);
-
3903 }
+
3895 std::vector<optix::int3> array;
+
3896 array.resize(bsize);
+
3897 for( int i=0; i<bsize; i++ ){
+
3898 array.at(i)=optix::make_int3(0,0,0);
+
3899 }
+
3900
+
3901 initializeBuffer1Dint3( buffer, array );
+
3902
+
3903 }else if( format==RT_FORMAT_UNSIGNED_INT ){
3904
-
3905 initializeBuffer1Dint3( buffer, array );
-
3906
-
3907 }else if( format==RT_FORMAT_UNSIGNED_INT ){
-
3908
-
3909 std::vector<uint> array;
-
3910 array.resize(bsize);
-
3911 for( int i=0; i<bsize; i++ ){
-
3912 array.at(i)=0;
-
3913 }
+
3905 std::vector<uint> array;
+
3906 array.resize(bsize);
+
3907 for( int i=0; i<bsize; i++ ){
+
3908 array.at(i)=0;
+
3909 }
+
3910
+
3911 initializeBuffer1Dui( buffer, array );
+
3912
+
3913 }else if( format==RT_FORMAT_BYTE ){
3914
-
3915 initializeBuffer1Dui( buffer, array );
-
3916
-
3917 }else if( format==RT_FORMAT_BYTE ){
-
3918
-
3919 std::vector<char> array;
-
3920 array.resize(bsize);
-
3921 for( int i=0; i<bsize; i++ ){
-
3922 array.at(i)=0;
-
3923 }
-
3924
-
3925 initializeBuffer1Dchar( buffer, array );
-
3926 }else{
-
3927 helios_runtime_error("ERROR (RadiationModel::zeroBuffer1D): Buffer type not supported.");
-
3928 }
+
3915 std::vector<char> array;
+
3916 array.resize(bsize);
+
3917 for( int i=0; i<bsize; i++ ){
+
3918 array.at(i)=0;
+
3919 }
+
3920
+
3921 initializeBuffer1Dchar( buffer, array );
+
3922 }else{
+
3923 helios_runtime_error("ERROR (RadiationModel::zeroBuffer1D): Buffer type not supported.");
+
3924 }
+
3925
+
3926}
+
3927
+
3928void RadiationModel::copyBuffer1D( RTbuffer &buffer, RTbuffer &buffer_copy ){
3929
-
3930}
+
3930 /* \todo Add support for all data types (currently only works for float and float3)*/
3931
-
3932void RadiationModel::copyBuffer1D( RTbuffer &buffer, RTbuffer &buffer_copy ){
-
3933
-
3934 /* \todo Add support for all data types (currently only works for float and float3)*/
+
3932 //get buffer format
+
3933 RTformat format;
+
3934 RT_CHECK_ERROR( rtBufferGetFormat( buffer, &format ) );
3935
-
3936 //get buffer format
-
3937 RTformat format;
-
3938 RT_CHECK_ERROR( rtBufferGetFormat( buffer, &format ) );
+
3936 //get buffer size
+
3937 RTsize bsize;
+
3938 rtBufferGetSize1D( buffer, &bsize );
3939
-
3940 //get buffer size
-
3941 RTsize bsize;
-
3942 rtBufferGetSize1D( buffer, &bsize );
+
3940 rtBufferSetSize1D( buffer_copy, bsize );
+
3941
+
3942 if( format==RT_FORMAT_FLOAT ){
3943
-
3944 rtBufferSetSize1D( buffer_copy, bsize );
-
3945
-
3946 if( format==RT_FORMAT_FLOAT ){
+
3944 void* ptr;
+
3945 RT_CHECK_ERROR( rtBufferMap( buffer, &ptr ) );
+
3946 float* data = (float*)ptr;
3947
-
3948 void* ptr;
-
3949 RT_CHECK_ERROR( rtBufferMap( buffer, &ptr ) );
-
3950 float* data = (float*)ptr;
+
3948 void* ptr_copy;
+
3949 RT_CHECK_ERROR( rtBufferMap( buffer_copy, &ptr_copy ) );
+
3950 float* data_copy = (float*)ptr_copy;
3951
-
3952 void* ptr_copy;
-
3953 RT_CHECK_ERROR( rtBufferMap( buffer_copy, &ptr_copy ) );
-
3954 float* data_copy = (float*)ptr_copy;
+
3952 for( size_t i = 0; i <bsize; i++ ) {
+
3953 data_copy[i] = data[i];
+
3954 }
3955
-
3956 for( size_t i = 0; i <bsize; i++ ) {
-
3957 data_copy[i] = data[i];
-
3958 }
-
3959
-
3960 }else if( format==RT_FORMAT_FLOAT3 ){
+
3956 }else if( format==RT_FORMAT_FLOAT3 ){
+
3957
+
3958 void* ptr;
+
3959 RT_CHECK_ERROR( rtBufferMap( buffer, &ptr ) );
+
3960 optix::float3* data = (optix::float3*)ptr;
3961
-
3962 void* ptr;
-
3963 RT_CHECK_ERROR( rtBufferMap( buffer, &ptr ) );
-
3964 optix::float3* data = (optix::float3*)ptr;
+
3962 void* ptr_copy;
+
3963 RT_CHECK_ERROR( rtBufferMap( buffer_copy, &ptr_copy ) );
+
3964 optix::float3* data_copy = (optix::float3*)ptr_copy;
3965
-
3966 void* ptr_copy;
-
3967 RT_CHECK_ERROR( rtBufferMap( buffer_copy, &ptr_copy ) );
-
3968 optix::float3* data_copy = (optix::float3*)ptr_copy;
+
3966 for( size_t i = 0; i <bsize; i++ ) {
+
3967 data_copy[i] = data[i];
+
3968 }
3969
-
3970 for( size_t i = 0; i <bsize; i++ ) {
-
3971 data_copy[i] = data[i];
-
3972 }
-
3973
-
3974 }
-
3975
-
3976 RT_CHECK_ERROR( rtBufferUnmap( buffer ) );
-
3977 RT_CHECK_ERROR( rtBufferUnmap( buffer_copy ) );
+
3970 }
+
3971
+
3972 RT_CHECK_ERROR( rtBufferUnmap( buffer ) );
+
3973 RT_CHECK_ERROR( rtBufferUnmap( buffer_copy ) );
+
3974
+
3975}
+
3976
+
3977void RadiationModel::initializeBuffer1Dd(RTbuffer &buffer, const std::vector<double> &array ){
3978
-
3979}
+
3979 size_t bsize = array.size();
3980
-
3981void RadiationModel::initializeBuffer1Dd(RTbuffer &buffer, const std::vector<double> &array ){
-
3982
-
3983 size_t bsize = array.size();
-
3984
-
3985 //set buffer size
-
3986 RT_CHECK_ERROR( rtBufferSetSize1D( buffer, bsize ) );
+
3981 //set buffer size
+
3982 RT_CHECK_ERROR( rtBufferSetSize1D( buffer, bsize ) );
+
3983
+
3984 //get buffer format
+
3985 RTformat format;
+
3986 RT_CHECK_ERROR( rtBufferGetFormat( buffer, &format ) );
3987
-
3988 //get buffer format
-
3989 RTformat format;
-
3990 RT_CHECK_ERROR( rtBufferGetFormat( buffer, &format ) );
+
3988 if( format!=RT_FORMAT_USER ){
+
3989 helios_runtime_error("ERROR (RadiationModel::initializeBuffer1Dd): Buffer must have type double.");
+
3990 }
3991
-
3992 if( format!=RT_FORMAT_USER ){
-
3993 helios_runtime_error("ERROR (RadiationModel::initializeBuffer1Dd): Buffer must have type double.");
-
3994 }
-
3995
-
3996 void* ptr;
-
3997 RT_CHECK_ERROR( rtBufferMap( buffer, &ptr ) );
-
3998
-
3999 double* data = (double*)ptr;
+
3992 void* ptr;
+
3993 RT_CHECK_ERROR( rtBufferMap( buffer, &ptr ) );
+
3994
+
3995 double* data = (double*)ptr;
+
3996
+
3997 for( size_t i = 0; i <bsize; i++ ) {
+
3998 data[i] = array[i];
+
3999 }
4000
-
4001 for( size_t i = 0; i <bsize; i++ ) {
-
4002 data[i] = array[i];
-
4003 }
+
4001 RT_CHECK_ERROR( rtBufferUnmap( buffer ) );
+
4002
+
4003}
4004
-
4005 RT_CHECK_ERROR( rtBufferUnmap( buffer ) );
+
4005void RadiationModel::initializeBuffer1Df(RTbuffer &buffer, const std::vector<float> &array ){
4006
-
4007}
+
4007 size_t bsize = array.size();
4008
-
4009void RadiationModel::initializeBuffer1Df(RTbuffer &buffer, const std::vector<float> &array ){
-
4010
-
4011 size_t bsize = array.size();
-
4012
-
4013 //set buffer size
-
4014 RT_CHECK_ERROR( rtBufferSetSize1D( buffer, bsize ) );
+
4009 //set buffer size
+
4010 RT_CHECK_ERROR( rtBufferSetSize1D( buffer, bsize ) );
+
4011
+
4012 //get buffer format
+
4013 RTformat format;
+
4014 RT_CHECK_ERROR( rtBufferGetFormat( buffer, &format ) );
4015
-
4016 //get buffer format
-
4017 RTformat format;
-
4018 RT_CHECK_ERROR( rtBufferGetFormat( buffer, &format ) );
+
4016 if( format!=RT_FORMAT_FLOAT ){
+
4017 helios_runtime_error("ERROR (RadiationModel::initializeBuffer1Df): Buffer must have type float.");
+
4018 }
4019
-
4020 if( format!=RT_FORMAT_FLOAT ){
-
4021 helios_runtime_error("ERROR (RadiationModel::initializeBuffer1Df): Buffer must have type float.");
-
4022 }
-
4023
-
4024 void* ptr;
-
4025 RT_CHECK_ERROR( rtBufferMap( buffer, &ptr ) );
-
4026
-
4027 float* data = (float*)ptr;
+
4020 void* ptr;
+
4021 RT_CHECK_ERROR( rtBufferMap( buffer, &ptr ) );
+
4022
+
4023 float* data = (float*)ptr;
+
4024
+
4025 for( size_t i = 0; i <bsize; i++ ) {
+
4026 data[i] = array[i];
+
4027 }
4028
-
4029 for( size_t i = 0; i <bsize; i++ ) {
-
4030 data[i] = array[i];
-
4031 }
+
4029 RT_CHECK_ERROR( rtBufferUnmap( buffer ) );
+
4030
+
4031}
4032
-
4033 RT_CHECK_ERROR( rtBufferUnmap( buffer ) );
+
4033void RadiationModel::initializeBuffer1Dfloat2(RTbuffer &buffer, const std::vector<optix::float2> &array ){
4034
-
4035}
+
4035 size_t bsize = array.size();
4036
-
4037void RadiationModel::initializeBuffer1Dfloat2(RTbuffer &buffer, const std::vector<optix::float2> &array ){
-
4038
-
4039 size_t bsize = array.size();
-
4040
-
4041 //set buffer size
-
4042 RT_CHECK_ERROR( rtBufferSetSize1D( buffer, bsize ) );
+
4037 //set buffer size
+
4038 RT_CHECK_ERROR( rtBufferSetSize1D( buffer, bsize ) );
+
4039
+
4040 //get buffer format
+
4041 RTformat format;
+
4042 RT_CHECK_ERROR( rtBufferGetFormat( buffer, &format ) );
4043
-
4044 //get buffer format
-
4045 RTformat format;
-
4046 RT_CHECK_ERROR( rtBufferGetFormat( buffer, &format ) );
+
4044 if( format!=RT_FORMAT_FLOAT2 ){
+
4045 helios_runtime_error("ERROR (RadiationModel::initializeBuffer1Dfloat2): Buffer must have type float2.");
+
4046 }
4047
-
4048 if( format!=RT_FORMAT_FLOAT2 ){
-
4049 helios_runtime_error("ERROR (RadiationModel::initializeBuffer1Dfloat2): Buffer must have type float2.");
-
4050 }
-
4051
-
4052 void* ptr;
-
4053 RT_CHECK_ERROR( rtBufferMap( buffer, &ptr ) );
-
4054
-
4055 optix::float2* data = (optix::float2*)ptr;
-
4056
-
4057 for( size_t i = 0; i <bsize; i++ ) {
-
4058 data[i].x = array[i].x;
-
4059 data[i].y = array[i].y;
-
4060 }
+
4048 void* ptr;
+
4049 RT_CHECK_ERROR( rtBufferMap( buffer, &ptr ) );
+
4050
+
4051 optix::float2* data = (optix::float2*)ptr;
+
4052
+
4053 for( size_t i = 0; i <bsize; i++ ) {
+
4054 data[i].x = array[i].x;
+
4055 data[i].y = array[i].y;
+
4056 }
+
4057
+
4058 RT_CHECK_ERROR( rtBufferUnmap( buffer ) );
+
4059
+
4060}
4061
-
4062 RT_CHECK_ERROR( rtBufferUnmap( buffer ) );
+
4062void RadiationModel::initializeBuffer1Dfloat3(RTbuffer &buffer, const std::vector<optix::float3> &array ){
4063
-
4064}
+
4064 size_t bsize = array.size();
4065
-
4066void RadiationModel::initializeBuffer1Dfloat3(RTbuffer &buffer, const std::vector<optix::float3> &array ){
-
4067
-
4068 size_t bsize = array.size();
-
4069
-
4070 //set buffer size
-
4071 RT_CHECK_ERROR( rtBufferSetSize1D( buffer, bsize ) );
+
4066 //set buffer size
+
4067 RT_CHECK_ERROR( rtBufferSetSize1D( buffer, bsize ) );
+
4068
+
4069 //get buffer format
+
4070 RTformat format;
+
4071 RT_CHECK_ERROR( rtBufferGetFormat( buffer, &format ) );
4072
-
4073 //get buffer format
-
4074 RTformat format;
-
4075 RT_CHECK_ERROR( rtBufferGetFormat( buffer, &format ) );
+
4073 if( format!=RT_FORMAT_FLOAT3 ){
+
4074 helios_runtime_error("ERROR (RadiationModel::initializeBuffer1Dfloat3): Buffer must have type float3.");
+
4075 }
4076
-
4077 if( format!=RT_FORMAT_FLOAT3 ){
-
4078 helios_runtime_error("ERROR (RadiationModel::initializeBuffer1Dfloat3): Buffer must have type float3.");
-
4079 }
-
4080
-
4081 void* ptr;
-
4082 RT_CHECK_ERROR( rtBufferMap( buffer, &ptr ) );
-
4083
-
4084 optix::float3* data = (optix::float3*)ptr;
-
4085
-
4086 for( size_t i = 0; i <bsize; i++ ) {
-
4087 data[i].x = array[i].x;
-
4088 data[i].y = array[i].y;
-
4089 data[i].z = array[i].z;
-
4090 }
+
4077 void* ptr;
+
4078 RT_CHECK_ERROR( rtBufferMap( buffer, &ptr ) );
+
4079
+
4080 optix::float3* data = (optix::float3*)ptr;
+
4081
+
4082 for( size_t i = 0; i <bsize; i++ ) {
+
4083 data[i].x = array[i].x;
+
4084 data[i].y = array[i].y;
+
4085 data[i].z = array[i].z;
+
4086 }
+
4087
+
4088 RT_CHECK_ERROR( rtBufferUnmap( buffer ) );
+
4089
+
4090}
4091
-
4092 RT_CHECK_ERROR( rtBufferUnmap( buffer ) );
+
4092void RadiationModel::initializeBuffer1Dfloat4(RTbuffer &buffer, const std::vector<optix::float4> &array ){
4093
-
4094}
+
4094 size_t bsize = array.size();
4095
-
4096void RadiationModel::initializeBuffer1Dfloat4(RTbuffer &buffer, const std::vector<optix::float4> &array ){
-
4097
-
4098 size_t bsize = array.size();
-
4099
-
4100 //set buffer size
-
4101 RT_CHECK_ERROR( rtBufferSetSize1D( buffer, bsize ) );
+
4096 //set buffer size
+
4097 RT_CHECK_ERROR( rtBufferSetSize1D( buffer, bsize ) );
+
4098
+
4099 //get buffer format
+
4100 RTformat format;
+
4101 RT_CHECK_ERROR( rtBufferGetFormat( buffer, &format ) );
4102
-
4103 //get buffer format
-
4104 RTformat format;
-
4105 RT_CHECK_ERROR( rtBufferGetFormat( buffer, &format ) );
+
4103 if( format!=RT_FORMAT_FLOAT4 ){
+
4104 helios_runtime_error("ERROR (RadiationModel::initializeBuffer1Dfloat4): Buffer must have type float4.");
+
4105 }
4106
-
4107 if( format!=RT_FORMAT_FLOAT4 ){
-
4108 helios_runtime_error("ERROR (RadiationModel::initializeBuffer1Dfloat4): Buffer must have type float4.");
-
4109 }
-
4110
-
4111 void* ptr;
-
4112 RT_CHECK_ERROR( rtBufferMap( buffer, &ptr ) );
-
4113
-
4114 optix::float4* data = (optix::float4*)ptr;
-
4115
-
4116 for( size_t i = 0; i <bsize; i++ ) {
-
4117 data[i].x = array[i].x;
-
4118 data[i].y = array[i].y;
-
4119 data[i].z = array[i].z;
-
4120 data[i].w = array[i].w;
-
4121 }
+
4107 void* ptr;
+
4108 RT_CHECK_ERROR( rtBufferMap( buffer, &ptr ) );
+
4109
+
4110 optix::float4* data = (optix::float4*)ptr;
+
4111
+
4112 for( size_t i = 0; i <bsize; i++ ) {
+
4113 data[i].x = array[i].x;
+
4114 data[i].y = array[i].y;
+
4115 data[i].z = array[i].z;
+
4116 data[i].w = array[i].w;
+
4117 }
+
4118
+
4119 RT_CHECK_ERROR( rtBufferUnmap( buffer ) );
+
4120
+
4121}
4122
-
4123 RT_CHECK_ERROR( rtBufferUnmap( buffer ) );
+
4123void RadiationModel::initializeBuffer1Di(RTbuffer &buffer, const std::vector<int> &array ){
4124
-
4125}
+
4125 size_t bsize = array.size();
4126
-
4127void RadiationModel::initializeBuffer1Di(RTbuffer &buffer, const std::vector<int> &array ){
-
4128
-
4129 size_t bsize = array.size();
-
4130
-
4131 //set buffer size
-
4132 RT_CHECK_ERROR( rtBufferSetSize1D( buffer, bsize ) );
+
4127 //set buffer size
+
4128 RT_CHECK_ERROR( rtBufferSetSize1D( buffer, bsize ) );
+
4129
+
4130 //get buffer format
+
4131 RTformat format;
+
4132 RT_CHECK_ERROR( rtBufferGetFormat( buffer, &format ) );
4133
-
4134 //get buffer format
-
4135 RTformat format;
-
4136 RT_CHECK_ERROR( rtBufferGetFormat( buffer, &format ) );
+
4134 if( format!=RT_FORMAT_INT ){
+
4135 helios_runtime_error("ERROR (RadiationModel::initializeBuffer1Di): Buffer must have type int.");
+
4136 }
4137
-
4138 if( format!=RT_FORMAT_INT ){
-
4139 helios_runtime_error("ERROR (RadiationModel::initializeBuffer1Di): Buffer must have type int.");
-
4140 }
-
4141
-
4142 void* ptr;
-
4143 RT_CHECK_ERROR( rtBufferMap( buffer, &ptr ) );
-
4144
-
4145 int* data = (int*)ptr;
+
4138 void* ptr;
+
4139 RT_CHECK_ERROR( rtBufferMap( buffer, &ptr ) );
+
4140
+
4141 int* data = (int*)ptr;
+
4142
+
4143 for( size_t i = 0; i <bsize; i++ ) {
+
4144 data[i] = array[i];
+
4145 }
4146
-
4147 for( size_t i = 0; i <bsize; i++ ) {
-
4148 data[i] = array[i];
-
4149 }
+
4147 RT_CHECK_ERROR( rtBufferUnmap( buffer ) );
+
4148
+
4149}
4150
-
4151 RT_CHECK_ERROR( rtBufferUnmap( buffer ) );
+
4151void RadiationModel::initializeBuffer1Dui(RTbuffer &buffer, const std::vector<uint> &array ){
4152
-
4153}
+
4153 size_t bsize = array.size();
4154
-
4155void RadiationModel::initializeBuffer1Dui(RTbuffer &buffer, const std::vector<uint> &array ){
-
4156
-
4157 size_t bsize = array.size();
-
4158
-
4159 //set buffer size
-
4160 RT_CHECK_ERROR( rtBufferSetSize1D( buffer, bsize ) );
+
4155 //set buffer size
+
4156 RT_CHECK_ERROR( rtBufferSetSize1D( buffer, bsize ) );
+
4157
+
4158 //get buffer format
+
4159 RTformat format;
+
4160 RT_CHECK_ERROR( rtBufferGetFormat( buffer, &format ) );
4161
-
4162 //get buffer format
-
4163 RTformat format;
-
4164 RT_CHECK_ERROR( rtBufferGetFormat( buffer, &format ) );
+
4162 if( format!=RT_FORMAT_UNSIGNED_INT ){
+
4163 helios_runtime_error("ERROR (RadiationModel::initializeBuffer1Dui): Buffer must have type unsigned int.");
+
4164 }
4165
-
4166 if( format!=RT_FORMAT_UNSIGNED_INT ){
-
4167 helios_runtime_error("ERROR (RadiationModel::initializeBuffer1Dui): Buffer must have type unsigned int.");
-
4168 }
-
4169
-
4170 void* ptr;
-
4171 RT_CHECK_ERROR( rtBufferMap( buffer, &ptr ) );
-
4172
-
4173 uint* data = (uint*)ptr;
+
4166 void* ptr;
+
4167 RT_CHECK_ERROR( rtBufferMap( buffer, &ptr ) );
+
4168
+
4169 uint* data = (uint*)ptr;
+
4170
+
4171 for( size_t i = 0; i <bsize; i++ ) {
+
4172 data[i] = array[i];
+
4173 }
4174
-
4175 for( size_t i = 0; i <bsize; i++ ) {
-
4176 data[i] = array[i];
-
4177 }
+
4175 RT_CHECK_ERROR( rtBufferUnmap( buffer ) );
+
4176
+
4177}
4178
-
4179 RT_CHECK_ERROR( rtBufferUnmap( buffer ) );
+
4179void RadiationModel::initializeBuffer1Dint2(RTbuffer &buffer, const std::vector<optix::int2> &array ){
4180
-
4181}
+
4181 size_t bsize = array.size();
4182
-
4183void RadiationModel::initializeBuffer1Dint2(RTbuffer &buffer, const std::vector<optix::int2> &array ){
-
4184
-
4185 size_t bsize = array.size();
-
4186
-
4187 //set buffer size
-
4188 RT_CHECK_ERROR( rtBufferSetSize1D( buffer, bsize ) );
+
4183 //set buffer size
+
4184 RT_CHECK_ERROR( rtBufferSetSize1D( buffer, bsize ) );
+
4185
+
4186 //get buffer format
+
4187 RTformat format;
+
4188 RT_CHECK_ERROR( rtBufferGetFormat( buffer, &format ) );
4189
-
4190 //get buffer format
-
4191 RTformat format;
-
4192 RT_CHECK_ERROR( rtBufferGetFormat( buffer, &format ) );
+
4190 if( format!=RT_FORMAT_INT2 ){
+
4191 helios_runtime_error("ERROR (RadiationModel::initializeBuffer1Dint2): Buffer must have type int2.");
+
4192 }
4193
-
4194 if( format!=RT_FORMAT_INT2 ){
-
4195 helios_runtime_error("ERROR (RadiationModel::initializeBuffer1Dint2): Buffer must have type int2.");
-
4196 }
-
4197
-
4198 void* ptr;
-
4199 RT_CHECK_ERROR( rtBufferMap( buffer, &ptr ) );
-
4200
-
4201 optix::int2* data = (optix::int2*)ptr;
+
4194 void* ptr;
+
4195 RT_CHECK_ERROR( rtBufferMap( buffer, &ptr ) );
+
4196
+
4197 optix::int2* data = (optix::int2*)ptr;
+
4198
+
4199 for( size_t i = 0; i <bsize; i++ ) {
+
4200 data[i] = array[i];
+
4201 }
4202
-
4203 for( size_t i = 0; i <bsize; i++ ) {
-
4204 data[i] = array[i];
-
4205 }
+
4203 RT_CHECK_ERROR( rtBufferUnmap( buffer ) );
+
4204
+
4205}
4206
-
4207 RT_CHECK_ERROR( rtBufferUnmap( buffer ) );
+
4207void RadiationModel::initializeBuffer1Dint3(RTbuffer &buffer, const std::vector<optix::int3> &array ){
4208
-
4209}
+
4209 size_t bsize = array.size();
4210
-
4211void RadiationModel::initializeBuffer1Dint3(RTbuffer &buffer, const std::vector<optix::int3> &array ){
-
4212
-
4213 size_t bsize = array.size();
-
4214
-
4215 //set buffer size
-
4216 RT_CHECK_ERROR( rtBufferSetSize1D( buffer, bsize ) );
+
4211 //set buffer size
+
4212 RT_CHECK_ERROR( rtBufferSetSize1D( buffer, bsize ) );
+
4213
+
4214 //get buffer format
+
4215 RTformat format;
+
4216 RT_CHECK_ERROR( rtBufferGetFormat( buffer, &format ) );
4217
-
4218 //get buffer format
-
4219 RTformat format;
-
4220 RT_CHECK_ERROR( rtBufferGetFormat( buffer, &format ) );
+
4218 if( format!=RT_FORMAT_INT3 ){
+
4219 helios_runtime_error("ERROR (RadiationModel::initializeBuffer1Dint3): Buffer must have type int3.");
+
4220 }
4221
-
4222 if( format!=RT_FORMAT_INT3 ){
-
4223 helios_runtime_error("ERROR (RadiationModel::initializeBuffer1Dint3): Buffer must have type int3.");
-
4224 }
-
4225
-
4226 void* ptr;
-
4227 RT_CHECK_ERROR( rtBufferMap( buffer, &ptr ) );
-
4228
-
4229 optix::int3* data = (optix::int3*)ptr;
+
4222 void* ptr;
+
4223 RT_CHECK_ERROR( rtBufferMap( buffer, &ptr ) );
+
4224
+
4225 optix::int3* data = (optix::int3*)ptr;
+
4226
+
4227 for( size_t i = 0; i <bsize; i++ ) {
+
4228 data[i] = array[i];
+
4229 }
4230
-
4231 for( size_t i = 0; i <bsize; i++ ) {
-
4232 data[i] = array[i];
-
4233 }
+
4231 RT_CHECK_ERROR( rtBufferUnmap( buffer ) );
+
4232
+
4233}
4234
-
4235 RT_CHECK_ERROR( rtBufferUnmap( buffer ) );
+
4235void RadiationModel::initializeBuffer1Dchar(RTbuffer &buffer, const std::vector<char> &array ){
4236
-
4237}
+
4237 size_t bsize = array.size();
4238
-
4239void RadiationModel::initializeBuffer1Dchar(RTbuffer &buffer, const std::vector<char> &array ){
-
4240
-
4241 size_t bsize = array.size();
-
4242
-
4243 //set buffer size
-
4244 RT_CHECK_ERROR( rtBufferSetSize1D( buffer, bsize ) );
+
4239 //set buffer size
+
4240 RT_CHECK_ERROR( rtBufferSetSize1D( buffer, bsize ) );
+
4241
+
4242 //get buffer format
+
4243 RTformat format;
+
4244 RT_CHECK_ERROR( rtBufferGetFormat( buffer, &format ) );
4245
-
4246 //get buffer format
-
4247 RTformat format;
-
4248 RT_CHECK_ERROR( rtBufferGetFormat( buffer, &format ) );
+
4246 if( format!=RT_FORMAT_BYTE ){
+
4247 helios_runtime_error("ERROR (RadiationModel::initializeBuffer1Dchar): Buffer must have type char.");
+
4248 }
4249
-
4250 if( format!=RT_FORMAT_BYTE ){
-
4251 helios_runtime_error("ERROR (RadiationModel::initializeBuffer1Dchar): Buffer must have type char.");
-
4252 }
-
4253
-
4254 void* ptr;
-
4255 RT_CHECK_ERROR( rtBufferMap( buffer, &ptr ) );
-
4256
-
4257 char* data = (char*)ptr;
+
4250 void* ptr;
+
4251 RT_CHECK_ERROR( rtBufferMap( buffer, &ptr ) );
+
4252
+
4253 char* data = (char*)ptr;
+
4254
+
4255 for( size_t i = 0; i <bsize; i++ ) {
+
4256 data[i] = array[i];
+
4257 }
4258
-
4259 for( size_t i = 0; i <bsize; i++ ) {
-
4260 data[i] = array[i];
-
4261 }
+
4259 RT_CHECK_ERROR( rtBufferUnmap( buffer ) );
+
4260
+
4261}
4262
-
4263 RT_CHECK_ERROR( rtBufferUnmap( buffer ) );
+
4263void RadiationModel::zeroBuffer2D(RTbuffer &buffer, optix::int2 bsize ){
4264
-
4265}
-
4266
-
4267void RadiationModel::zeroBuffer2D(RTbuffer &buffer, optix::int2 bsize ){
-
4268
-
4269 //set buffer size
-
4270 RT_CHECK_ERROR( rtBufferSetSize2D( buffer, bsize.x, bsize.y ) );
+
4265 //set buffer size
+
4266 RT_CHECK_ERROR( rtBufferSetSize2D( buffer, bsize.x, bsize.y ) );
+
4267
+
4268 //get buffer format
+
4269 RTformat format;
+
4270 RT_CHECK_ERROR( rtBufferGetFormat( buffer, &format ) );
4271
-
4272 //get buffer format
-
4273 RTformat format;
-
4274 RT_CHECK_ERROR( rtBufferGetFormat( buffer, &format ) );
-
4275
-
4276 if( format==RT_FORMAT_USER ){//Note: for now we'll assume this means it's a double
-
4277 std::vector<std::vector<double> > array;
-
4278 array.resize(bsize.y);
-
4279 for( int j=0; j<bsize.y; j++ ){
-
4280 array.at(j).resize(bsize.x);
-
4281 for( int i=0; i<bsize.x; i++ ){
-
4282 array.at(j).at(i)=0.f;
-
4283 }
-
4284 }
-
4285 initializeBuffer2Dd( buffer, array );
-
4286 }else if( format==RT_FORMAT_FLOAT ){
-
4287 std::vector<std::vector<float> > array;
-
4288 array.resize(bsize.y);
-
4289 for( int j=0; j<bsize.y; j++ ){
-
4290 array.at(j).resize(bsize.x);
-
4291 for( int i=0; i<bsize.x; i++ ){
-
4292 array.at(j).at(i)=0.f;
-
4293 }
-
4294 }
-
4295 initializeBuffer2Df( buffer, array );
-
4296 }else if( format==RT_FORMAT_FLOAT2 ){
-
4297 std::vector<std::vector<optix::float2> > array;
-
4298 array.resize(bsize.y);
-
4299 for( int j=0; j<bsize.y; j++ ){
-
4300 array.at(j).resize(bsize.x);
-
4301 for( int i=0; i<bsize.x; i++ ){
-
4302 array.at(j).at(i).x=0.f;
-
4303 array.at(j).at(i).y=0.f;
-
4304 }
-
4305 }
-
4306 initializeBuffer2Dfloat2( buffer, array );
-
4307 }else if( format==RT_FORMAT_FLOAT3 ){
-
4308 std::vector<std::vector<optix::float3> > array;
-
4309 array.resize(bsize.y);
-
4310 for( int j=0; j<bsize.y; j++ ){
-
4311 array.at(j).resize(bsize.x);
-
4312 for( int i=0; i<bsize.x; i++ ){
-
4313 array.at(j).at(i).x=0.f;
-
4314 array.at(j).at(i).y=0.f;
-
4315 array.at(j).at(i).z=0.f;
-
4316 }
-
4317 }
-
4318 initializeBuffer2Dfloat3( buffer, array );
-
4319 }else if( format==RT_FORMAT_FLOAT4 ){
-
4320 std::vector<std::vector<optix::float4> > array;
-
4321 array.resize(bsize.y);
-
4322 for( int j=0; j<bsize.y; j++ ){
-
4323 array.at(j).resize(bsize.x);
-
4324 for( int i=0; i<bsize.x; i++ ){
-
4325 array.at(j).at(i).x=0.f;
-
4326 array.at(j).at(i).y=0.f;
-
4327 array.at(j).at(i).z=0.f;
-
4328 array.at(j).at(i).w=0.f;
-
4329 }
-
4330 }
-
4331 initializeBuffer2Dfloat4( buffer, array );
-
4332 }else if( format==RT_FORMAT_INT ){
-
4333 std::vector<std::vector<int> > array;
-
4334 array.resize(bsize.y);
-
4335 for( int j=0; j<bsize.y; j++ ){
-
4336 array.at(j).resize(bsize.x);
-
4337 for( int i=0; i<bsize.x; i++ ){
-
4338 array.at(j).at(i)=0;
-
4339 }
-
4340 }
-
4341 initializeBuffer2Di( buffer, array );
-
4342 }else if( format==RT_FORMAT_UNSIGNED_INT ){
-
4343 std::vector<std::vector<uint> > array;
-
4344 array.resize(bsize.y);
-
4345 for( int j=0; j<bsize.y; j++ ){
-
4346 array.at(j).resize(bsize.x);
-
4347 for( int i=0; i<bsize.x; i++ ){
-
4348 array.at(j).at(i)=0;
-
4349 }
-
4350 }
-
4351 initializeBuffer2Dui( buffer, array );
-
4352 }else if( format==RT_FORMAT_INT2 ){
-
4353 std::vector<std::vector<optix::int2> > array;
-
4354 array.resize(bsize.y);
-
4355 for( int j=0; j<bsize.y; j++ ){
-
4356 array.at(j).resize(bsize.x);
-
4357 for( int i=0; i<bsize.x; i++ ){
-
4358 array.at(j).at(i).x=0;
-
4359 array.at(j).at(i).y=0;
-
4360 }
-
4361 }
-
4362 initializeBuffer2Dint2( buffer, array );
-
4363 }else if( format==RT_FORMAT_INT3 ){
-
4364 std::vector<std::vector<optix::int3> > array;
-
4365 array.resize(bsize.y);
-
4366 for( int j=0; j<bsize.y; j++ ){
-
4367 array.at(j).resize(bsize.x);
-
4368 for( int i=0; i<bsize.x; i++ ){
-
4369 array.at(j).at(i).x=0;
-
4370 array.at(j).at(i).y=0;
-
4371 array.at(j).at(i).z=0;
-
4372 }
-
4373 }
-
4374 initializeBuffer2Dint3( buffer, array );
-
4375 }else if( format==RT_FORMAT_BYTE ){
-
4376 std::vector<std::vector<bool> > array;
-
4377 array.resize(bsize.y);
-
4378 for( int j=0; j<bsize.y; j++ ){
-
4379 array.at(j).resize(bsize.x);
-
4380 for( int i=0; i<bsize.x; i++ ){
-
4381 array.at(j).at(i)=false;
-
4382 }
-
4383 }
-
4384 initializeBuffer2Dbool( buffer, array );
-
4385 }else{
-
4386 helios_runtime_error("ERROR (RadiationModel::zeroBuffer2D): unknown buffer format.");
-
4387 }
+
4272 if( format==RT_FORMAT_USER ){//Note: for now we'll assume this means it's a double
+
4273 std::vector<std::vector<double> > array;
+
4274 array.resize(bsize.y);
+
4275 for( int j=0; j<bsize.y; j++ ){
+
4276 array.at(j).resize(bsize.x);
+
4277 for( int i=0; i<bsize.x; i++ ){
+
4278 array.at(j).at(i)=0.f;
+
4279 }
+
4280 }
+
4281 initializeBuffer2Dd( buffer, array );
+
4282 }else if( format==RT_FORMAT_FLOAT ){
+
4283 std::vector<std::vector<float> > array;
+
4284 array.resize(bsize.y);
+
4285 for( int j=0; j<bsize.y; j++ ){
+
4286 array.at(j).resize(bsize.x);
+
4287 for( int i=0; i<bsize.x; i++ ){
+
4288 array.at(j).at(i)=0.f;
+
4289 }
+
4290 }
+
4291 initializeBuffer2Df( buffer, array );
+
4292 }else if( format==RT_FORMAT_FLOAT2 ){
+
4293 std::vector<std::vector<optix::float2> > array;
+
4294 array.resize(bsize.y);
+
4295 for( int j=0; j<bsize.y; j++ ){
+
4296 array.at(j).resize(bsize.x);
+
4297 for( int i=0; i<bsize.x; i++ ){
+
4298 array.at(j).at(i).x=0.f;
+
4299 array.at(j).at(i).y=0.f;
+
4300 }
+
4301 }
+
4302 initializeBuffer2Dfloat2( buffer, array );
+
4303 }else if( format==RT_FORMAT_FLOAT3 ){
+
4304 std::vector<std::vector<optix::float3> > array;
+
4305 array.resize(bsize.y);
+
4306 for( int j=0; j<bsize.y; j++ ){
+
4307 array.at(j).resize(bsize.x);
+
4308 for( int i=0; i<bsize.x; i++ ){
+
4309 array.at(j).at(i).x=0.f;
+
4310 array.at(j).at(i).y=0.f;
+
4311 array.at(j).at(i).z=0.f;
+
4312 }
+
4313 }
+
4314 initializeBuffer2Dfloat3( buffer, array );
+
4315 }else if( format==RT_FORMAT_FLOAT4 ){
+
4316 std::vector<std::vector<optix::float4> > array;
+
4317 array.resize(bsize.y);
+
4318 for( int j=0; j<bsize.y; j++ ){
+
4319 array.at(j).resize(bsize.x);
+
4320 for( int i=0; i<bsize.x; i++ ){
+
4321 array.at(j).at(i).x=0.f;
+
4322 array.at(j).at(i).y=0.f;
+
4323 array.at(j).at(i).z=0.f;
+
4324 array.at(j).at(i).w=0.f;
+
4325 }
+
4326 }
+
4327 initializeBuffer2Dfloat4( buffer, array );
+
4328 }else if( format==RT_FORMAT_INT ){
+
4329 std::vector<std::vector<int> > array;
+
4330 array.resize(bsize.y);
+
4331 for( int j=0; j<bsize.y; j++ ){
+
4332 array.at(j).resize(bsize.x);
+
4333 for( int i=0; i<bsize.x; i++ ){
+
4334 array.at(j).at(i)=0;
+
4335 }
+
4336 }
+
4337 initializeBuffer2Di( buffer, array );
+
4338 }else if( format==RT_FORMAT_UNSIGNED_INT ){
+
4339 std::vector<std::vector<uint> > array;
+
4340 array.resize(bsize.y);
+
4341 for( int j=0; j<bsize.y; j++ ){
+
4342 array.at(j).resize(bsize.x);
+
4343 for( int i=0; i<bsize.x; i++ ){
+
4344 array.at(j).at(i)=0;
+
4345 }
+
4346 }
+
4347 initializeBuffer2Dui( buffer, array );
+
4348 }else if( format==RT_FORMAT_INT2 ){
+
4349 std::vector<std::vector<optix::int2> > array;
+
4350 array.resize(bsize.y);
+
4351 for( int j=0; j<bsize.y; j++ ){
+
4352 array.at(j).resize(bsize.x);
+
4353 for( int i=0; i<bsize.x; i++ ){
+
4354 array.at(j).at(i).x=0;
+
4355 array.at(j).at(i).y=0;
+
4356 }
+
4357 }
+
4358 initializeBuffer2Dint2( buffer, array );
+
4359 }else if( format==RT_FORMAT_INT3 ){
+
4360 std::vector<std::vector<optix::int3> > array;
+
4361 array.resize(bsize.y);
+
4362 for( int j=0; j<bsize.y; j++ ){
+
4363 array.at(j).resize(bsize.x);
+
4364 for( int i=0; i<bsize.x; i++ ){
+
4365 array.at(j).at(i).x=0;
+
4366 array.at(j).at(i).y=0;
+
4367 array.at(j).at(i).z=0;
+
4368 }
+
4369 }
+
4370 initializeBuffer2Dint3( buffer, array );
+
4371 }else if( format==RT_FORMAT_BYTE ){
+
4372 std::vector<std::vector<bool> > array;
+
4373 array.resize(bsize.y);
+
4374 for( int j=0; j<bsize.y; j++ ){
+
4375 array.at(j).resize(bsize.x);
+
4376 for( int i=0; i<bsize.x; i++ ){
+
4377 array.at(j).at(i)=false;
+
4378 }
+
4379 }
+
4380 initializeBuffer2Dbool( buffer, array );
+
4381 }else{
+
4382 helios_runtime_error("ERROR (RadiationModel::zeroBuffer2D): unknown buffer format.");
+
4383 }
+
4384
+
4385}
+
4386
+
4387void RadiationModel::initializeBuffer2Dd(RTbuffer &buffer, const std::vector<std::vector<double>> &array ){
4388
-
4389}
-
4390
-
4391void RadiationModel::initializeBuffer2Dd(RTbuffer &buffer, const std::vector<std::vector<double>> &array ){
-
4392
-
4393 optix::int2 bsize;
-
4394 bsize.y = array.size();
-
4395 if( bsize.y==0 ){
-
4396 bsize.x = 0;
-
4397 }else{
-
4398 bsize.x = array.front().size();
-
4399 }
-
4400
-
4401 //set buffer size
-
4402 RT_CHECK_ERROR( rtBufferSetSize2D( buffer, bsize.x, bsize.y ) );
+
4389 optix::int2 bsize;
+
4390 bsize.y = array.size();
+
4391 if( bsize.y==0 ){
+
4392 bsize.x = 0;
+
4393 }else{
+
4394 bsize.x = array.front().size();
+
4395 }
+
4396
+
4397 //set buffer size
+
4398 RT_CHECK_ERROR( rtBufferSetSize2D( buffer, bsize.x, bsize.y ) );
+
4399
+
4400 //get buffer formatsyn
+
4401 RTformat format;
+
4402 RT_CHECK_ERROR( rtBufferGetFormat( buffer, &format ) );
4403
-
4404 //get buffer formatsyn
-
4405 RTformat format;
-
4406 RT_CHECK_ERROR( rtBufferGetFormat( buffer, &format ) );
-
4407
-
4408 void* ptr;
-
4409 RT_CHECK_ERROR( rtBufferMap( buffer, &ptr ) );
-
4410
-
4411 if( format==RT_FORMAT_USER ){
-
4412 double* data = (double*)ptr;
-
4413 for( size_t j = 0; j<bsize.y; j++ ) {
-
4414 for( size_t i = 0; i<bsize.x; i++ ) {
-
4415 data[i+j*bsize.x] = array[j][i];
-
4416 }
-
4417 }
-
4418 }else{
-
4419 helios_runtime_error("ERROR (RadiationModel::initializeBuffer2Dd): Buffer does not have format 'RT_FORMAT_USER'.");
-
4420 }
+
4404 void* ptr;
+
4405 RT_CHECK_ERROR( rtBufferMap( buffer, &ptr ) );
+
4406
+
4407 if( format==RT_FORMAT_USER ){
+
4408 double* data = (double*)ptr;
+
4409 for( size_t j = 0; j<bsize.y; j++ ) {
+
4410 for( size_t i = 0; i<bsize.x; i++ ) {
+
4411 data[i+j*bsize.x] = array[j][i];
+
4412 }
+
4413 }
+
4414 }else{
+
4415 helios_runtime_error("ERROR (RadiationModel::initializeBuffer2Dd): Buffer does not have format 'RT_FORMAT_USER'.");
+
4416 }
+
4417
+
4418 RT_CHECK_ERROR( rtBufferUnmap( buffer ) );
+
4419
+
4420}
4421
-
4422 RT_CHECK_ERROR( rtBufferUnmap( buffer ) );
+
4422void RadiationModel::initializeBuffer2Df(RTbuffer &buffer, const std::vector<std::vector<float>> &array ){
4423
-
4424}
-
4425
-
4426void RadiationModel::initializeBuffer2Df(RTbuffer &buffer, const std::vector<std::vector<float>> &array ){
-
4427
-
4428 optix::int2 bsize;
-
4429 bsize.y = array.size();
-
4430 if( bsize.y==0 ){
-
4431 bsize.x = 0;
-
4432 }else{
-
4433 bsize.x = array.front().size();
-
4434 }
-
4435
-
4436 //set buffer size
-
4437 RT_CHECK_ERROR( rtBufferSetSize2D( buffer, bsize.x, bsize.y ) );
+
4424 optix::int2 bsize;
+
4425 bsize.y = array.size();
+
4426 if( bsize.y==0 ){
+
4427 bsize.x = 0;
+
4428 }else{
+
4429 bsize.x = array.front().size();
+
4430 }
+
4431
+
4432 //set buffer size
+
4433 RT_CHECK_ERROR( rtBufferSetSize2D( buffer, bsize.x, bsize.y ) );
+
4434
+
4435 //get buffer format
+
4436 RTformat format;
+
4437 RT_CHECK_ERROR( rtBufferGetFormat( buffer, &format ) );
4438
-
4439 //get buffer format
-
4440 RTformat format;
-
4441 RT_CHECK_ERROR( rtBufferGetFormat( buffer, &format ) );
-
4442
-
4443 void* ptr;
-
4444 RT_CHECK_ERROR( rtBufferMap( buffer, &ptr ) );
-
4445
-
4446 if( format==RT_FORMAT_FLOAT ){
-
4447 float* data = (float*)ptr;
-
4448 for( size_t j = 0; j<bsize.y; j++ ) {
-
4449 for( size_t i = 0; i<bsize.x; i++ ) {
-
4450 data[i+j*bsize.x] = array[j][i];
-
4451 }
-
4452 }
-
4453 }else{
-
4454 helios_runtime_error("ERROR (RadiationModel::initializeBuffer2Df): Buffer does not have format 'RT_FORMAT_FLOAT'.");
-
4455 }
+
4439 void* ptr;
+
4440 RT_CHECK_ERROR( rtBufferMap( buffer, &ptr ) );
+
4441
+
4442 if( format==RT_FORMAT_FLOAT ){
+
4443 float* data = (float*)ptr;
+
4444 for( size_t j = 0; j<bsize.y; j++ ) {
+
4445 for( size_t i = 0; i<bsize.x; i++ ) {
+
4446 data[i+j*bsize.x] = array[j][i];
+
4447 }
+
4448 }
+
4449 }else{
+
4450 helios_runtime_error("ERROR (RadiationModel::initializeBuffer2Df): Buffer does not have format 'RT_FORMAT_FLOAT'.");
+
4451 }
+
4452
+
4453 RT_CHECK_ERROR( rtBufferUnmap( buffer ) );
+
4454
+
4455}
4456
-
4457 RT_CHECK_ERROR( rtBufferUnmap( buffer ) );
+
4457void RadiationModel::initializeBuffer2Dfloat2(RTbuffer &buffer, const std::vector<std::vector<optix::float2>> &array ){
4458
-
4459}
-
4460
-
4461void RadiationModel::initializeBuffer2Dfloat2(RTbuffer &buffer, const std::vector<std::vector<optix::float2>> &array ){
-
4462
-
4463 optix::int2 bsize;
-
4464 bsize.y = array.size();
-
4465 if( bsize.y==0 ){
-
4466 bsize.x = 0;
-
4467 }else{
-
4468 bsize.x = array.front().size();
-
4469 }
-
4470
-
4471 //set buffer size
-
4472 RT_CHECK_ERROR( rtBufferSetSize2D( buffer, bsize.x, bsize.y ) );
+
4459 optix::int2 bsize;
+
4460 bsize.y = array.size();
+
4461 if( bsize.y==0 ){
+
4462 bsize.x = 0;
+
4463 }else{
+
4464 bsize.x = array.front().size();
+
4465 }
+
4466
+
4467 //set buffer size
+
4468 RT_CHECK_ERROR( rtBufferSetSize2D( buffer, bsize.x, bsize.y ) );
+
4469
+
4470 //get buffer format
+
4471 RTformat format;
+
4472 RT_CHECK_ERROR( rtBufferGetFormat( buffer, &format ) );
4473
-
4474 //get buffer format
-
4475 RTformat format;
-
4476 RT_CHECK_ERROR( rtBufferGetFormat( buffer, &format ) );
-
4477
-
4478 void* ptr;
-
4479 RT_CHECK_ERROR( rtBufferMap( buffer, &ptr ) );
-
4480
-
4481 if( format==RT_FORMAT_FLOAT2 ){
-
4482 optix::float2* data = (optix::float2*)ptr;
-
4483 for( size_t j = 0; j<bsize.y; j++ ) {
-
4484 for( size_t i = 0; i<bsize.x; i++ ) {
-
4485 data[i+j*bsize.x].x = array[j][i].x;
-
4486 data[i+j*bsize.x].y = array[j][i].y;
-
4487 }
-
4488 }
-
4489 }else{
-
4490 helios_runtime_error("ERROR (RadiationModel::initializeBuffer2Dfloat2): Buffer does not have format 'RT_FORMAT_FLOAT2'.");
-
4491 }
+
4474 void* ptr;
+
4475 RT_CHECK_ERROR( rtBufferMap( buffer, &ptr ) );
+
4476
+
4477 if( format==RT_FORMAT_FLOAT2 ){
+
4478 optix::float2* data = (optix::float2*)ptr;
+
4479 for( size_t j = 0; j<bsize.y; j++ ) {
+
4480 for( size_t i = 0; i<bsize.x; i++ ) {
+
4481 data[i+j*bsize.x].x = array[j][i].x;
+
4482 data[i+j*bsize.x].y = array[j][i].y;
+
4483 }
+
4484 }
+
4485 }else{
+
4486 helios_runtime_error("ERROR (RadiationModel::initializeBuffer2Dfloat2): Buffer does not have format 'RT_FORMAT_FLOAT2'.");
+
4487 }
+
4488
+
4489 RT_CHECK_ERROR( rtBufferUnmap( buffer ) );
+
4490
+
4491}
4492
-
4493 RT_CHECK_ERROR( rtBufferUnmap( buffer ) );
+
4493void RadiationModel::initializeBuffer2Dfloat3(RTbuffer &buffer, const std::vector<std::vector<optix::float3>> &array ){
4494
-
4495}
-
4496
-
4497void RadiationModel::initializeBuffer2Dfloat3(RTbuffer &buffer, const std::vector<std::vector<optix::float3>> &array ){
-
4498
-
4499 optix::int2 bsize;
-
4500 bsize.y = array.size();
-
4501 if( bsize.y==0 ){
-
4502 bsize.x = 0;
-
4503 }else{
-
4504 bsize.x = array.front().size();
-
4505 }
-
4506
-
4507 //set buffer size
-
4508 RT_CHECK_ERROR( rtBufferSetSize2D( buffer, bsize.x, bsize.y ) );
+
4495 optix::int2 bsize;
+
4496 bsize.y = array.size();
+
4497 if( bsize.y==0 ){
+
4498 bsize.x = 0;
+
4499 }else{
+
4500 bsize.x = array.front().size();
+
4501 }
+
4502
+
4503 //set buffer size
+
4504 RT_CHECK_ERROR( rtBufferSetSize2D( buffer, bsize.x, bsize.y ) );
+
4505
+
4506 //get buffer format
+
4507 RTformat format;
+
4508 RT_CHECK_ERROR( rtBufferGetFormat( buffer, &format ) );
4509
-
4510 //get buffer format
-
4511 RTformat format;
-
4512 RT_CHECK_ERROR( rtBufferGetFormat( buffer, &format ) );
-
4513
-
4514 void* ptr;
-
4515 RT_CHECK_ERROR( rtBufferMap( buffer, &ptr ) );
-
4516
-
4517 if( format==RT_FORMAT_FLOAT3 ){
-
4518 optix::float3* data = (optix::float3*)ptr;
-
4519 for( size_t j = 0; j<bsize.y; j++ ) {
-
4520 for( size_t i = 0; i<bsize.x; i++ ) {
-
4521 data[i+j*bsize.x].x = array.at(j).at(i).x;
-
4522 data[i+j*bsize.x].y = array.at(j).at(i).y;
-
4523 data[i+j*bsize.x].z = array.at(j).at(i).z;
-
4524 }
-
4525 }
-
4526 }else{
-
4527 helios_runtime_error("ERROR (RadiationModel::initializeBuffer2Dfloat3): Buffer does not have format 'RT_FORMAT_FLOAT3'.");
-
4528 }
+
4510 void* ptr;
+
4511 RT_CHECK_ERROR( rtBufferMap( buffer, &ptr ) );
+
4512
+
4513 if( format==RT_FORMAT_FLOAT3 ){
+
4514 optix::float3* data = (optix::float3*)ptr;
+
4515 for( size_t j = 0; j<bsize.y; j++ ) {
+
4516 for( size_t i = 0; i<bsize.x; i++ ) {
+
4517 data[i+j*bsize.x].x = array.at(j).at(i).x;
+
4518 data[i+j*bsize.x].y = array.at(j).at(i).y;
+
4519 data[i+j*bsize.x].z = array.at(j).at(i).z;
+
4520 }
+
4521 }
+
4522 }else{
+
4523 helios_runtime_error("ERROR (RadiationModel::initializeBuffer2Dfloat3): Buffer does not have format 'RT_FORMAT_FLOAT3'.");
+
4524 }
+
4525
+
4526 RT_CHECK_ERROR( rtBufferUnmap( buffer ) );
+
4527
+
4528}
4529
-
4530 RT_CHECK_ERROR( rtBufferUnmap( buffer ) );
+
4530void RadiationModel::initializeBuffer2Dfloat4(RTbuffer &buffer, const std::vector<std::vector<optix::float4>> &array ){
4531
-
4532}
-
4533
-
4534void RadiationModel::initializeBuffer2Dfloat4(RTbuffer &buffer, const std::vector<std::vector<optix::float4>> &array ){
-
4535
-
4536 optix::int2 bsize;
-
4537 bsize.y = array.size();
-
4538 if( bsize.y==0 ){
-
4539 bsize.x = 0;
-
4540 }else{
-
4541 bsize.x = array.front().size();
-
4542 }
-
4543
-
4544 //set buffer size
-
4545 RT_CHECK_ERROR( rtBufferSetSize2D( buffer, bsize.x, bsize.y ) );
+
4532 optix::int2 bsize;
+
4533 bsize.y = array.size();
+
4534 if( bsize.y==0 ){
+
4535 bsize.x = 0;
+
4536 }else{
+
4537 bsize.x = array.front().size();
+
4538 }
+
4539
+
4540 //set buffer size
+
4541 RT_CHECK_ERROR( rtBufferSetSize2D( buffer, bsize.x, bsize.y ) );
+
4542
+
4543 //get buffer format
+
4544 RTformat format;
+
4545 RT_CHECK_ERROR( rtBufferGetFormat( buffer, &format ) );
4546
-
4547 //get buffer format
-
4548 RTformat format;
-
4549 RT_CHECK_ERROR( rtBufferGetFormat( buffer, &format ) );
-
4550
-
4551 void* ptr;
-
4552 RT_CHECK_ERROR( rtBufferMap( buffer, &ptr ) );
-
4553
-
4554 if( format==RT_FORMAT_FLOAT4 ){
-
4555 optix::float4* data = (optix::float4*)ptr;
-
4556 for( size_t j = 0; j<bsize.y; j++ ) {
-
4557 for( size_t i = 0; i<bsize.x; i++ ) {
-
4558 data[i+j*bsize.x].x = array[j][i].x;
-
4559 data[i+j*bsize.x].y = array[j][i].y;
-
4560 data[i+j*bsize.x].z = array[j][i].z;
-
4561 data[i+j*bsize.x].w = array[j][i].w;
-
4562 }
-
4563 }
-
4564 }else{
-
4565 helios_runtime_error("ERROR (RadiationModel::initializeBuffer2Dfloat4): Buffer does not have format 'RT_FORMAT_FLOAT4'.");
-
4566 }
+
4547 void* ptr;
+
4548 RT_CHECK_ERROR( rtBufferMap( buffer, &ptr ) );
+
4549
+
4550 if( format==RT_FORMAT_FLOAT4 ){
+
4551 optix::float4* data = (optix::float4*)ptr;
+
4552 for( size_t j = 0; j<bsize.y; j++ ) {
+
4553 for( size_t i = 0; i<bsize.x; i++ ) {
+
4554 data[i+j*bsize.x].x = array[j][i].x;
+
4555 data[i+j*bsize.x].y = array[j][i].y;
+
4556 data[i+j*bsize.x].z = array[j][i].z;
+
4557 data[i+j*bsize.x].w = array[j][i].w;
+
4558 }
+
4559 }
+
4560 }else{
+
4561 helios_runtime_error("ERROR (RadiationModel::initializeBuffer2Dfloat4): Buffer does not have format 'RT_FORMAT_FLOAT4'.");
+
4562 }
+
4563
+
4564 RT_CHECK_ERROR( rtBufferUnmap( buffer ) );
+
4565
+
4566}
4567
-
4568 RT_CHECK_ERROR( rtBufferUnmap( buffer ) );
+
4568void RadiationModel::initializeBuffer2Di(RTbuffer &buffer, const std::vector<std::vector<int>> &array ){
4569
-
4570}
-
4571
-
4572void RadiationModel::initializeBuffer2Di(RTbuffer &buffer, const std::vector<std::vector<int>> &array ){
-
4573
-
4574 optix::int2 bsize;
-
4575 bsize.y = array.size();
-
4576 if( bsize.y==0 ){
-
4577 bsize.x = 0;
-
4578 }else{
-
4579 bsize.x = array.front().size();
-
4580 }
-
4581
-
4582 //set buffer size
-
4583 RT_CHECK_ERROR( rtBufferSetSize2D( buffer, bsize.x, bsize.y ) );
+
4570 optix::int2 bsize;
+
4571 bsize.y = array.size();
+
4572 if( bsize.y==0 ){
+
4573 bsize.x = 0;
+
4574 }else{
+
4575 bsize.x = array.front().size();
+
4576 }
+
4577
+
4578 //set buffer size
+
4579 RT_CHECK_ERROR( rtBufferSetSize2D( buffer, bsize.x, bsize.y ) );
+
4580
+
4581 //get buffer format
+
4582 RTformat format;
+
4583 RT_CHECK_ERROR( rtBufferGetFormat( buffer, &format ) );
4584
-
4585 //get buffer format
-
4586 RTformat format;
-
4587 RT_CHECK_ERROR( rtBufferGetFormat( buffer, &format ) );
-
4588
-
4589 void* ptr;
-
4590 RT_CHECK_ERROR( rtBufferMap( buffer, &ptr ) );
-
4591
-
4592 if( format==RT_FORMAT_INT ){
-
4593 int* data = (int*)ptr;
-
4594 for( size_t j = 0; j<bsize.y; j++ ) {
-
4595 for( size_t i = 0; i<bsize.x; i++ ) {
-
4596 data[i+j*bsize.x] = array[j][i];
-
4597 }
-
4598 }
-
4599 }else{
-
4600 helios_runtime_error("ERROR (RadiationModel::initializeBuffer2Di): Buffer does not have format 'RT_FORMAT_INT'.");
-
4601 }
+
4585 void* ptr;
+
4586 RT_CHECK_ERROR( rtBufferMap( buffer, &ptr ) );
+
4587
+
4588 if( format==RT_FORMAT_INT ){
+
4589 int* data = (int*)ptr;
+
4590 for( size_t j = 0; j<bsize.y; j++ ) {
+
4591 for( size_t i = 0; i<bsize.x; i++ ) {
+
4592 data[i+j*bsize.x] = array[j][i];
+
4593 }
+
4594 }
+
4595 }else{
+
4596 helios_runtime_error("ERROR (RadiationModel::initializeBuffer2Di): Buffer does not have format 'RT_FORMAT_INT'.");
+
4597 }
+
4598
+
4599 RT_CHECK_ERROR( rtBufferUnmap( buffer ) );
+
4600
+
4601}
4602
-
4603 RT_CHECK_ERROR( rtBufferUnmap( buffer ) );
+
4603void RadiationModel::initializeBuffer2Dui(RTbuffer &buffer, const std::vector<std::vector<uint>> &array ){
4604
-
4605}
-
4606
-
4607void RadiationModel::initializeBuffer2Dui(RTbuffer &buffer, const std::vector<std::vector<uint>> &array ){
-
4608
-
4609 optix::int2 bsize;
-
4610 bsize.y = array.size();
-
4611 if( bsize.y==0 ){
-
4612 bsize.x = 0;
-
4613 }else{
-
4614 bsize.x = array.front().size();
-
4615 }
-
4616
-
4617 //set buffer size
-
4618 RT_CHECK_ERROR( rtBufferSetSize2D( buffer, bsize.x, bsize.y ) );
+
4605 optix::int2 bsize;
+
4606 bsize.y = array.size();
+
4607 if( bsize.y==0 ){
+
4608 bsize.x = 0;
+
4609 }else{
+
4610 bsize.x = array.front().size();
+
4611 }
+
4612
+
4613 //set buffer size
+
4614 RT_CHECK_ERROR( rtBufferSetSize2D( buffer, bsize.x, bsize.y ) );
+
4615
+
4616 //get buffer format
+
4617 RTformat format;
+
4618 RT_CHECK_ERROR( rtBufferGetFormat( buffer, &format ) );
4619
-
4620 //get buffer format
-
4621 RTformat format;
-
4622 RT_CHECK_ERROR( rtBufferGetFormat( buffer, &format ) );
-
4623
-
4624 void* ptr;
-
4625 RT_CHECK_ERROR( rtBufferMap( buffer, &ptr ) );
-
4626
-
4627 if( format==RT_FORMAT_UNSIGNED_INT ){
-
4628 uint* data = (uint*)ptr;
-
4629 for( size_t j = 0; j<bsize.y; j++ ) {
-
4630 for( size_t i = 0; i<bsize.x; i++ ) {
-
4631 data[i+j*bsize.x] = array[j][i];
-
4632 }
-
4633 }
-
4634 }else{
-
4635 helios_runtime_error("ERROR (RadiationModel::initializeBuffer2Dui): Buffer does not have format 'RT_FORMAT_UNSIGNED_INT'.");
-
4636 }
+
4620 void* ptr;
+
4621 RT_CHECK_ERROR( rtBufferMap( buffer, &ptr ) );
+
4622
+
4623 if( format==RT_FORMAT_UNSIGNED_INT ){
+
4624 uint* data = (uint*)ptr;
+
4625 for( size_t j = 0; j<bsize.y; j++ ) {
+
4626 for( size_t i = 0; i<bsize.x; i++ ) {
+
4627 data[i+j*bsize.x] = array[j][i];
+
4628 }
+
4629 }
+
4630 }else{
+
4631 helios_runtime_error("ERROR (RadiationModel::initializeBuffer2Dui): Buffer does not have format 'RT_FORMAT_UNSIGNED_INT'.");
+
4632 }
+
4633
+
4634 RT_CHECK_ERROR( rtBufferUnmap( buffer ) );
+
4635
+
4636}
4637
-
4638 RT_CHECK_ERROR( rtBufferUnmap( buffer ) );
+
4638void RadiationModel::initializeBuffer2Dint2(RTbuffer &buffer, const std::vector<std::vector<optix::int2>> &array ){
4639
-
4640}
-
4641
-
4642void RadiationModel::initializeBuffer2Dint2(RTbuffer &buffer, const std::vector<std::vector<optix::int2>> &array ){
-
4643
-
4644 optix::int2 bsize;
-
4645 bsize.y = array.size();
-
4646 if( bsize.y==0 ){
-
4647 bsize.x = 0;
-
4648 }else{
-
4649 bsize.x = array.front().size();
-
4650 }
-
4651
-
4652 //set buffer size
-
4653 RT_CHECK_ERROR( rtBufferSetSize2D( buffer, bsize.x, bsize.y ) );
+
4640 optix::int2 bsize;
+
4641 bsize.y = array.size();
+
4642 if( bsize.y==0 ){
+
4643 bsize.x = 0;
+
4644 }else{
+
4645 bsize.x = array.front().size();
+
4646 }
+
4647
+
4648 //set buffer size
+
4649 RT_CHECK_ERROR( rtBufferSetSize2D( buffer, bsize.x, bsize.y ) );
+
4650
+
4651 //get buffer format
+
4652 RTformat format;
+
4653 RT_CHECK_ERROR( rtBufferGetFormat( buffer, &format ) );
4654
-
4655 //get buffer format
-
4656 RTformat format;
-
4657 RT_CHECK_ERROR( rtBufferGetFormat( buffer, &format ) );
-
4658
-
4659 void* ptr;
-
4660 RT_CHECK_ERROR( rtBufferMap( buffer, &ptr ) );
-
4661
-
4662 if( format==RT_FORMAT_INT2 ){
-
4663 optix::int2* data = (optix::int2*)ptr;
-
4664 for( size_t j = 0; j<bsize.y; j++ ) {
-
4665 for( size_t i = 0; i<bsize.x; i++ ) {
-
4666 data[i+j*bsize.x].x = array[j][i].x;
-
4667 data[i+j*bsize.x].y = array[j][i].y;
-
4668 }
-
4669 }
-
4670 }else{
-
4671 helios_runtime_error("ERROR (RadiationModel::initializeBuffer2Dint2): Buffer does not have format 'RT_FORMAT_INT2'.");
-
4672 }
+
4655 void* ptr;
+
4656 RT_CHECK_ERROR( rtBufferMap( buffer, &ptr ) );
+
4657
+
4658 if( format==RT_FORMAT_INT2 ){
+
4659 optix::int2* data = (optix::int2*)ptr;
+
4660 for( size_t j = 0; j<bsize.y; j++ ) {
+
4661 for( size_t i = 0; i<bsize.x; i++ ) {
+
4662 data[i+j*bsize.x].x = array[j][i].x;
+
4663 data[i+j*bsize.x].y = array[j][i].y;
+
4664 }
+
4665 }
+
4666 }else{
+
4667 helios_runtime_error("ERROR (RadiationModel::initializeBuffer2Dint2): Buffer does not have format 'RT_FORMAT_INT2'.");
+
4668 }
+
4669
+
4670 RT_CHECK_ERROR( rtBufferUnmap( buffer ) );
+
4671
+
4672}
4673
-
4674 RT_CHECK_ERROR( rtBufferUnmap( buffer ) );
+
4674void RadiationModel::initializeBuffer2Dint3(RTbuffer &buffer, const std::vector<std::vector<optix::int3>> &array ){
4675
-
4676}
-
4677
-
4678void RadiationModel::initializeBuffer2Dint3(RTbuffer &buffer, const std::vector<std::vector<optix::int3>> &array ){
-
4679
-
4680 optix::int2 bsize;
-
4681 bsize.y = array.size();
-
4682 if( bsize.y==0 ){
-
4683 bsize.x = 0;
-
4684 }else{
-
4685 bsize.x = array.front().size();
-
4686 }
-
4687
-
4688 //set buffer size
-
4689 RT_CHECK_ERROR( rtBufferSetSize2D( buffer, bsize.x, bsize.y ) );
+
4676 optix::int2 bsize;
+
4677 bsize.y = array.size();
+
4678 if( bsize.y==0 ){
+
4679 bsize.x = 0;
+
4680 }else{
+
4681 bsize.x = array.front().size();
+
4682 }
+
4683
+
4684 //set buffer size
+
4685 RT_CHECK_ERROR( rtBufferSetSize2D( buffer, bsize.x, bsize.y ) );
+
4686
+
4687 //get buffer format
+
4688 RTformat format;
+
4689 RT_CHECK_ERROR( rtBufferGetFormat( buffer, &format ) );
4690
-
4691 //get buffer format
-
4692 RTformat format;
-
4693 RT_CHECK_ERROR( rtBufferGetFormat( buffer, &format ) );
-
4694
-
4695 void* ptr;
-
4696 RT_CHECK_ERROR( rtBufferMap( buffer, &ptr ) );
-
4697
-
4698 if( format==RT_FORMAT_INT3 ){
-
4699 optix::int3* data = (optix::int3*)ptr;
-
4700 for( size_t j = 0; j<bsize.y; j++ ) {
-
4701 for( size_t i = 0; i<bsize.x; i++ ) {
-
4702 data[i+j*bsize.x].x = array[j][i].x;
-
4703 data[i+j*bsize.x].y = array[j][i].y;
-
4704 data[i+j*bsize.x].z = array[j][i].z;
-
4705 }
-
4706 }
-
4707 }else{
-
4708 helios_runtime_error("ERROR (RadiationModel::initializeBuffer2Dint3): Buffer does not have format 'RT_FORMAT_INT3'.");
-
4709 }
+
4691 void* ptr;
+
4692 RT_CHECK_ERROR( rtBufferMap( buffer, &ptr ) );
+
4693
+
4694 if( format==RT_FORMAT_INT3 ){
+
4695 optix::int3* data = (optix::int3*)ptr;
+
4696 for( size_t j = 0; j<bsize.y; j++ ) {
+
4697 for( size_t i = 0; i<bsize.x; i++ ) {
+
4698 data[i+j*bsize.x].x = array[j][i].x;
+
4699 data[i+j*bsize.x].y = array[j][i].y;
+
4700 data[i+j*bsize.x].z = array[j][i].z;
+
4701 }
+
4702 }
+
4703 }else{
+
4704 helios_runtime_error("ERROR (RadiationModel::initializeBuffer2Dint3): Buffer does not have format 'RT_FORMAT_INT3'.");
+
4705 }
+
4706
+
4707 RT_CHECK_ERROR( rtBufferUnmap( buffer ) );
+
4708
+
4709}
4710
-
4711 RT_CHECK_ERROR( rtBufferUnmap( buffer ) );
+
4711void RadiationModel::initializeBuffer2Dbool(RTbuffer &buffer, const std::vector<std::vector<bool>> &array ){
4712
-
4713}
-
4714
-
4715void RadiationModel::initializeBuffer2Dbool(RTbuffer &buffer, const std::vector<std::vector<bool>> &array ){
-
4716
-
4717 optix::int2 bsize;
-
4718 bsize.y = array.size();
-
4719 if( bsize.y==0 ){
-
4720 bsize.x = 0;
-
4721 }else{
-
4722 bsize.x = array.front().size();
-
4723 }
-
4724
-
4725 //set buffer size
-
4726 RT_CHECK_ERROR( rtBufferSetSize2D( buffer, bsize.x, bsize.y ) );
+
4713 optix::int2 bsize;
+
4714 bsize.y = array.size();
+
4715 if( bsize.y==0 ){
+
4716 bsize.x = 0;
+
4717 }else{
+
4718 bsize.x = array.front().size();
+
4719 }
+
4720
+
4721 //set buffer size
+
4722 RT_CHECK_ERROR( rtBufferSetSize2D( buffer, bsize.x, bsize.y ) );
+
4723
+
4724 //get buffer format
+
4725 RTformat format;
+
4726 RT_CHECK_ERROR( rtBufferGetFormat( buffer, &format ) );
4727
-
4728 //get buffer format
-
4729 RTformat format;
-
4730 RT_CHECK_ERROR( rtBufferGetFormat( buffer, &format ) );
-
4731
-
4732 void* ptr;
-
4733 RT_CHECK_ERROR( rtBufferMap( buffer, &ptr ) );
-
4734
-
4735 if( format==RT_FORMAT_BYTE ){
-
4736 bool* data = (bool*)ptr;
-
4737 for( size_t j = 0; j<bsize.y; j++ ) {
-
4738 for( size_t i = 0; i<bsize.x; i++ ) {
-
4739 data[i+j*bsize.x] = array[j][i];
-
4740 }
-
4741 }
-
4742 }else{
-
4743 helios_runtime_error("ERROR (RadiationModel::initializeBuffer2Dbool): Buffer does not have format 'RT_FORMAT_BYTE'.");
-
4744 }
+
4728 void* ptr;
+
4729 RT_CHECK_ERROR( rtBufferMap( buffer, &ptr ) );
+
4730
+
4731 if( format==RT_FORMAT_BYTE ){
+
4732 bool* data = (bool*)ptr;
+
4733 for( size_t j = 0; j<bsize.y; j++ ) {
+
4734 for( size_t i = 0; i<bsize.x; i++ ) {
+
4735 data[i+j*bsize.x] = array[j][i];
+
4736 }
+
4737 }
+
4738 }else{
+
4739 helios_runtime_error("ERROR (RadiationModel::initializeBuffer2Dbool): Buffer does not have format 'RT_FORMAT_BYTE'.");
+
4740 }
+
4741
+
4742 RT_CHECK_ERROR( rtBufferUnmap( buffer ) );
+
4743
+
4744}
4745
-
4746 RT_CHECK_ERROR( rtBufferUnmap( buffer ) );
-
4747
-
4748}
-
4749
-
4750template <typename anytype>
-
4751void RadiationModel::initializeBuffer3D(RTbuffer &buffer, const std::vector<std::vector<std::vector<anytype>>> &array ){
-
4752
-
4753 optix::int3 bsize;
-
4754 bsize.z = array.size();
-
4755 if( bsize.z==0 ){
-
4756 bsize.y=0;
-
4757 bsize.x=0;
-
4758 }else{
-
4759 bsize.y=array.front().size();
-
4760 if( bsize.y==0 ){
-
4761 bsize.x=0;
-
4762 }else{
-
4763 bsize.x = array.front().front().size();
-
4764 }
-
4765 }
-
4766
-
4767 //set buffer size
-
4768 RT_CHECK_ERROR( rtBufferSetSize3D( buffer, bsize.x, bsize.y, bsize.z ) );
+
4746template <typename anytype>
+
4747void RadiationModel::initializeBuffer3D(RTbuffer &buffer, const std::vector<std::vector<std::vector<anytype>>> &array ){
+
4748
+
4749 optix::int3 bsize;
+
4750 bsize.z = array.size();
+
4751 if( bsize.z==0 ){
+
4752 bsize.y=0;
+
4753 bsize.x=0;
+
4754 }else{
+
4755 bsize.y=array.front().size();
+
4756 if( bsize.y==0 ){
+
4757 bsize.x=0;
+
4758 }else{
+
4759 bsize.x = array.front().front().size();
+
4760 }
+
4761 }
+
4762
+
4763 //set buffer size
+
4764 RT_CHECK_ERROR( rtBufferSetSize3D( buffer, bsize.x, bsize.y, bsize.z ) );
+
4765
+
4766 //get buffer format
+
4767 RTformat format;
+
4768 RT_CHECK_ERROR( rtBufferGetFormat( buffer, &format ) );
4769
-
4770 //get buffer format
-
4771 RTformat format;
-
4772 RT_CHECK_ERROR( rtBufferGetFormat( buffer, &format ) );
+
4770 //zero out buffer
+
4771 void* ptr;
+
4772 RT_CHECK_ERROR( rtBufferMap( buffer, &ptr ) );
4773
-
4774 //zero out buffer
-
4775 void* ptr;
-
4776 RT_CHECK_ERROR( rtBufferMap( buffer, &ptr ) );
-
4777
-
4778 if( format==RT_FORMAT_FLOAT ){
-
4779 float* data = (float*)ptr;
-
4780 for( size_t k = 0; k<bsize.z; k++ ) {
-
4781 for( size_t j = 0; j<bsize.y; j++ ) {
-
4782 for( size_t i = 0; i<bsize.x; i++ ) {
-
4783 data[i+j*bsize.x+k*bsize.y*bsize.x] = array[k][j][i];
-
4784 }
-
4785 }
-
4786 }
-
4787 }else if( format==RT_FORMAT_INT ){
-
4788 int* data = (int*)ptr;
-
4789 for( size_t k = 0; k<bsize.z; k++ ) {
-
4790 for( size_t j = 0; j<bsize.y; j++ ) {
-
4791 for( size_t i = 0; i<bsize.x; i++ ) {
-
4792 data[i+j*bsize.x+k*bsize.y*bsize.x] = array[k][j][i];
-
4793 }
-
4794 }
-
4795 }
-
4796 }else if( format==RT_FORMAT_UNSIGNED_INT ){
-
4797 uint* data = (uint*)ptr;
-
4798 for( size_t k = 0; k<bsize.z; k++ ) {
-
4799 for( size_t j = 0; j<bsize.y; j++ ) {
-
4800 for( size_t i = 0; i<bsize.x; i++ ) {
-
4801 data[i+j*bsize.x+k*bsize.y*bsize.x] = array[k][j][i];
-
4802 }
-
4803 }
-
4804 }
-
4805 }else if( format==RT_FORMAT_BYTE ){
-
4806 bool* data = (bool*)ptr;
-
4807 for( size_t k = 0; k<bsize.z; k++ ) {
-
4808 for( size_t j = 0; j<bsize.y; j++ ) {
-
4809 for( size_t i = 0; i<bsize.x; i++ ) {
-
4810 data[i+j*bsize.x+k*bsize.y*bsize.x] = array[k][j][i];
-
4811 }
-
4812 }
-
4813 }
-
4814 }else{
-
4815 std::cerr<< "ERROR (RadiationModel::initializeBuffer3D): unsupported buffer format." << std::endl;
+
4774 if( format==RT_FORMAT_FLOAT ){
+
4775 float* data = (float*)ptr;
+
4776 for( size_t k = 0; k<bsize.z; k++ ) {
+
4777 for( size_t j = 0; j<bsize.y; j++ ) {
+
4778 for( size_t i = 0; i<bsize.x; i++ ) {
+
4779 data[i+j*bsize.x+k*bsize.y*bsize.x] = array[k][j][i];
+
4780 }
+
4781 }
+
4782 }
+
4783 }else if( format==RT_FORMAT_INT ){
+
4784 int* data = (int*)ptr;
+
4785 for( size_t k = 0; k<bsize.z; k++ ) {
+
4786 for( size_t j = 0; j<bsize.y; j++ ) {
+
4787 for( size_t i = 0; i<bsize.x; i++ ) {
+
4788 data[i+j*bsize.x+k*bsize.y*bsize.x] = array[k][j][i];
+
4789 }
+
4790 }
+
4791 }
+
4792 }else if( format==RT_FORMAT_UNSIGNED_INT ){
+
4793 uint* data = (uint*)ptr;
+
4794 for( size_t k = 0; k<bsize.z; k++ ) {
+
4795 for( size_t j = 0; j<bsize.y; j++ ) {
+
4796 for( size_t i = 0; i<bsize.x; i++ ) {
+
4797 data[i+j*bsize.x+k*bsize.y*bsize.x] = array[k][j][i];
+
4798 }
+
4799 }
+
4800 }
+
4801 }else if( format==RT_FORMAT_BYTE ){
+
4802 bool* data = (bool*)ptr;
+
4803 for( size_t k = 0; k<bsize.z; k++ ) {
+
4804 for( size_t j = 0; j<bsize.y; j++ ) {
+
4805 for( size_t i = 0; i<bsize.x; i++ ) {
+
4806 data[i+j*bsize.x+k*bsize.y*bsize.x] = array[k][j][i];
+
4807 }
+
4808 }
+
4809 }
+
4810 }else{
+
4811 std::cerr<< "ERROR (RadiationModel::initializeBuffer3D): unsupported buffer format." << std::endl;
+
4812
+
4813 }
+
4814
+
4815 RT_CHECK_ERROR( rtBufferUnmap( buffer ) );
4816
-
4817 }
-
4818
-
4819 RT_CHECK_ERROR( rtBufferUnmap( buffer ) );
-
4820
+
4817
+
4818}
+
4819
+
+
4820float RadiationModel::calculateGtheta(helios::Context* context, vec3 view_direction ){
4821
-
4822}
-
4823
-
-
4824float RadiationModel::calculateGtheta(helios::Context* context, vec3 view_direction ){
-
4825
-
4826 vec3 dir = view_direction;
-
4827 dir.normalize();
+
4822 vec3 dir = view_direction;
+
4823 dir.normalize();
+
4824
+
4825 float Gtheta = 0;
+
4826 float total_area = 0;
+
4827 for( std::size_t u=0; u<primitiveID.size(); u++ ){
4828
-
4829 float Gtheta = 0;
-
4830 float total_area = 0;
-
4831 for( std::size_t u=0; u<primitiveID.size(); u++ ){
-
4832
-
4833 uint UUID = context_UUIDs.at(primitiveID.at(u));
-
4834
-
4835 vec3 normal = context->getPrimitiveNormal(UUID);
-
4836 float area = context->getPrimitiveArea(UUID);
+
4829 uint UUID = context_UUIDs.at(primitiveID.at(u));
+
4830
+
4831 vec3 normal = context->getPrimitiveNormal(UUID);
+
4832 float area = context->getPrimitiveArea(UUID);
+
4833
+
4834 Gtheta += fabsf(normal*dir)*area;
+
4835
+
4836 total_area += area;
4837
-
4838 Gtheta += fabsf(normal*dir)*area;
+
4838 }
4839
-
4840 total_area += area;
+
4840 return Gtheta/total_area;
4841
-
4842 }
-
4843
-
4844 return Gtheta/total_area;
-
4845
-
4846}
+
4842}
-
4847
-
4848void RadiationModel::setCameraCalibration(CameraCalibration *CameraCalibration){
-
4849 cameracalibration = CameraCalibration;
-
4850 calibration_flag = true;
-
4851}
+
4843
+
4844void RadiationModel::setCameraCalibration(CameraCalibration *CameraCalibration){
+
4845 cameracalibration = CameraCalibration;
+
4846 calibration_flag = true;
+
4847}
+
4848
+
+
4849void RadiationModel::updateCameraResponse(const std::string &orginalcameralabel, const std::vector<std::string> &sourcelabels_raw,
+
4850 const std::vector<std::string>& cameraresponselabels, vec2 &wavelengthrange,
+
4851 const std::vector<std::vector<float>> &truevalues, const std::string &calibratedmark) {
4852
-
-
4853void RadiationModel::updateCameraResponse(const std::string &orginalcameralabel, const std::vector<std::string> &sourcelabels_raw,
-
4854 const std::vector<std::string>& cameraresponselabels, vec2 &wavelengthrange,
-
4855 const std::vector<std::vector<float>> &truevalues, const std::string &calibratedmark) {
+
4853 std::vector<std::string> objectlabels;
+
4854 vec2 wavelengthrange_c = wavelengthrange;
+
4855 cameracalibration->preprocessSpectra(sourcelabels_raw, cameraresponselabels, objectlabels, wavelengthrange_c);
4856
-
4857 std::vector<std::string> objectlabels;
-
4858 vec2 wavelengthrange_c = wavelengthrange;
-
4859 cameracalibration->preprocessSpectra(sourcelabels_raw, cameraresponselabels, objectlabels, wavelengthrange_c);
-
4860
-
4861 RadiationCamera calibratecamera = cameras.at(orginalcameralabel);
-
4862 CameraProperties cameraproperties;
-
4863 cameraproperties.HFOV = calibratecamera.HFOV_degrees;
-
4864 cameraproperties.camera_resolution = calibratecamera.resolution;
-
4865 cameraproperties.focal_plane_distance = calibratecamera.focal_length;
-
4866 cameraproperties.lens_diameter = calibratecamera.lens_diameter;
-
4867 cameraproperties.FOV_aspect_ratio = calibratecamera.FOV_aspect_ratio;
-
4868
-
4869 std::vector<uint> UUIDs_target = cameracalibration->getColorBoardUUIDs();
-
4870 std::string cameralabel = "calibration";
-
4871 std::map<uint,std::vector<vec2>> simulatedcolorboardspectra;
-
4872 for (uint UUID:UUIDs_target){
-
4873 simulatedcolorboardspectra.emplace(UUID, NULL);
+
4857 RadiationCamera calibratecamera = cameras.at(orginalcameralabel);
+
4858 CameraProperties cameraproperties;
+
4859 cameraproperties.HFOV = calibratecamera.HFOV_degrees;
+
4860 cameraproperties.camera_resolution = calibratecamera.resolution;
+
4861 cameraproperties.focal_plane_distance = calibratecamera.focal_length;
+
4862 cameraproperties.lens_diameter = calibratecamera.lens_diameter;
+
4863 cameraproperties.FOV_aspect_ratio = calibratecamera.FOV_aspect_ratio;
+
4864
+
4865 std::vector<uint> UUIDs_target = cameracalibration->getColorBoardUUIDs();
+
4866 std::string cameralabel = "calibration";
+
4867 std::map<uint,std::vector<vec2>> simulatedcolorboardspectra;
+
4868 for (uint UUID:UUIDs_target){
+
4869 simulatedcolorboardspectra.emplace(UUID, NULL);
+
4870 }
+
4871
+
4872 for (uint ID = 0; ID<radiation_sources.size();ID++) {
+
4873 RadiationModel::setSourceSpectrumIntegral(ID, 1);
4874 }
4875
-
4876 for (uint ID = 0; ID<radiation_sources.size();ID++) {
-
4877 RadiationModel::setSourceSpectrumIntegral(ID, 1);
-
4878 }
+
4876 std::vector<float> wavelengths;
+
4877 context->getGlobalData("wavelengths", wavelengths);
+
4878 int numberwavelengths= wavelengths.size();
4879
-
4880 std::vector<float> wavelengths;
-
4881 context->getGlobalData("wavelengths", wavelengths);
-
4882 int numberwavelengths= wavelengths.size();
-
4883
-
4884 for (int iw=0; iw < numberwavelengths; iw++) {
-
4885 std::string wavelengthlabel = std::to_string(wavelengths.at(iw));
-
4886
-
4887 std::vector<std::string> sourcelabels;
-
4888 for (std::string sourcelabel_raw:sourcelabels_raw){
-
4889 std::vector<vec2> icalsource;
-
4890 icalsource.push_back(cameracalibration->processedspectra.at("source").at(sourcelabel_raw).at(iw));
-
4891 icalsource.push_back(cameracalibration->processedspectra.at("source").at(sourcelabel_raw).at(iw));
-
4892 icalsource.at(1).x+=1;
-
4893 std::string sourcelable = "Cal_source_"+sourcelabel_raw;
-
4894 sourcelabels.push_back(sourcelable);
-
4895 context->setGlobalData(sourcelable.c_str(),HELIOS_TYPE_VEC2,2,&icalsource[0]);
-
4896 }
-
4897
-
4898 std::vector<vec2> icalcamera(2);
-
4899 icalcamera.at(0).y=1;
-
4900 icalcamera.at(1).y=1;
-
4901 icalcamera.at(0).x=wavelengths.at(iw);
-
4902 icalcamera.at(1).x=wavelengths.at(iw)+1;
-
4903 std::string camlable = "Cal_cameraresponse";
-
4904 context->setGlobalData(camlable.c_str(),HELIOS_TYPE_VEC2,2,&icalcamera[0]);
-
4905
-
4906 for (auto objectpair : cameracalibration->processedspectra.at("object")){
-
4907 std::vector<vec2> spectrum_obj;
-
4908 spectrum_obj.push_back(objectpair.second.at(iw));
-
4909 spectrum_obj.push_back(objectpair.second.at(iw));
-
4910 spectrum_obj.at(1).x += 1;
-
4911 context->setGlobalData(objectpair.first.c_str(), HELIOS_TYPE_VEC2, 2, &spectrum_obj[0]);
-
4912 }
-
4913
-
4914 RadiationModel::addRadiationBand(wavelengthlabel, std::stof(wavelengthlabel), std::stof(wavelengthlabel) + 1);
-
4915 RadiationModel::disableEmission(wavelengthlabel);
-
4916
-
4917 uint ID = 0;
-
4918 for (std::string sourcelabel_raw:sourcelabels_raw) {
-
4919 RadiationModel::setSourceSpectrum(ID, sourcelabels.at(ID).c_str());
-
4920 RadiationModel::setSourceFlux(ID, wavelengthlabel, 1);
-
4921 ID ++;
-
4922 }
-
4923 RadiationModel::setScatteringDepth(wavelengthlabel, 1);
-
4924 RadiationModel::setDiffuseRadiationFlux(wavelengthlabel, 0);
-
4925 RadiationModel::setDiffuseRadiationExtinctionCoeff(wavelengthlabel, 0.f, make_vec3(-0.5, 0.5, 1));
-
4926
-
4927 RadiationModel::addRadiationCamera(cameralabel, {wavelengthlabel}, calibratecamera.position, calibratecamera.lookat, cameraproperties, 10);
-
4928 RadiationModel::setCameraSpectralResponse(cameralabel, wavelengthlabel, camlable);
-
4929 RadiationModel::updateGeometry();
-
4930 RadiationModel::runBand({wavelengthlabel});
+
4880 for (int iw=0; iw < numberwavelengths; iw++) {
+
4881 std::string wavelengthlabel = std::to_string(wavelengths.at(iw));
+
4882
+
4883 std::vector<std::string> sourcelabels;
+
4884 for (std::string sourcelabel_raw:sourcelabels_raw){
+
4885 std::vector<vec2> icalsource;
+
4886 icalsource.push_back(cameracalibration->processedspectra.at("source").at(sourcelabel_raw).at(iw));
+
4887 icalsource.push_back(cameracalibration->processedspectra.at("source").at(sourcelabel_raw).at(iw));
+
4888 icalsource.at(1).x+=1;
+
4889 std::string sourcelable = "Cal_source_"+sourcelabel_raw;
+
4890 sourcelabels.push_back(sourcelable);
+
4891 context->setGlobalData(sourcelable.c_str(),HELIOS_TYPE_VEC2,2,&icalsource[0]);
+
4892 }
+
4893
+
4894 std::vector<vec2> icalcamera(2);
+
4895 icalcamera.at(0).y=1;
+
4896 icalcamera.at(1).y=1;
+
4897 icalcamera.at(0).x=wavelengths.at(iw);
+
4898 icalcamera.at(1).x=wavelengths.at(iw)+1;
+
4899 std::string camlable = "Cal_cameraresponse";
+
4900 context->setGlobalData(camlable.c_str(),HELIOS_TYPE_VEC2,2,&icalcamera[0]);
+
4901
+
4902 for (auto objectpair : cameracalibration->processedspectra.at("object")){
+
4903 std::vector<vec2> spectrum_obj;
+
4904 spectrum_obj.push_back(objectpair.second.at(iw));
+
4905 spectrum_obj.push_back(objectpair.second.at(iw));
+
4906 spectrum_obj.at(1).x += 1;
+
4907 context->setGlobalData(objectpair.first.c_str(), HELIOS_TYPE_VEC2, 2, &spectrum_obj[0]);
+
4908 }
+
4909
+
4910 RadiationModel::addRadiationBand(wavelengthlabel, std::stof(wavelengthlabel), std::stof(wavelengthlabel) + 1);
+
4911 RadiationModel::disableEmission(wavelengthlabel);
+
4912
+
4913 uint ID = 0;
+
4914 for (std::string sourcelabel_raw:sourcelabels_raw) {
+
4915 RadiationModel::setSourceSpectrum(ID, sourcelabels.at(ID).c_str());
+
4916 RadiationModel::setSourceFlux(ID, wavelengthlabel, 1);
+
4917 ID ++;
+
4918 }
+
4919 RadiationModel::setScatteringDepth(wavelengthlabel, 1);
+
4920 RadiationModel::setDiffuseRadiationFlux(wavelengthlabel, 0);
+
4921 RadiationModel::setDiffuseRadiationExtinctionCoeff(wavelengthlabel, 0.f, make_vec3(-0.5, 0.5, 1));
+
4922
+
4923 RadiationModel::addRadiationCamera(cameralabel, {wavelengthlabel}, calibratecamera.position, calibratecamera.lookat, cameraproperties, 10);
+
4924 RadiationModel::setCameraSpectralResponse(cameralabel, wavelengthlabel, camlable);
+
4925 RadiationModel::updateGeometry();
+
4926 RadiationModel::runBand({wavelengthlabel});
+
4927
+
4928 std::vector<float> camera_data;
+
4929 std::string global_data_label = "camera_" + cameralabel + "_" + wavelengthlabel;
+
4930 context->getGlobalData(global_data_label.c_str(), camera_data);
4931
-
4932 std::vector<float> camera_data;
-
4933 std::string global_data_label = "camera_" + cameralabel + "_" + wavelengthlabel;
-
4934 context->getGlobalData(global_data_label.c_str(), camera_data);
+
4932 std::vector<uint> pixel_labels;
+
4933 std::string global_data_label_UUID = "camera_" + cameralabel + "_pixel_UUID";
+
4934 context->getGlobalData(global_data_label_UUID.c_str(), pixel_labels);
4935
-
4936 std::vector<uint> pixel_labels;
-
4937 std::string global_data_label_UUID = "camera_" + cameralabel + "_pixel_UUID";
-
4938 context->getGlobalData(global_data_label_UUID.c_str(), pixel_labels);
+
4936 for (uint j = 0; j < calibratecamera.resolution.y; j++) {
+
4937 for (uint i = 0; i < calibratecamera.resolution.x; i++) {
+
4938 float icdata = camera_data.at(j * calibratecamera.resolution.x + i);
4939
-
4940 for (uint j = 0; j < calibratecamera.resolution.y; j++) {
-
4941 for (uint i = 0; i < calibratecamera.resolution.x; i++) {
-
4942 float icdata = camera_data.at(j * calibratecamera.resolution.x + i);
-
4943
-
4944 uint UUID = pixel_labels.at(j * calibratecamera.resolution.x + i)-1;
-
4945 if (find(UUIDs_target.begin(), UUIDs_target.end(), UUID) != UUIDs_target.end()){
-
4946 if ( simulatedcolorboardspectra.at(UUID).empty()){
-
4947 simulatedcolorboardspectra.at(UUID).push_back(make_vec2(wavelengths.at(iw), icdata / float(numberwavelengths)));
-
4948 }
-
4949 else if (simulatedcolorboardspectra.at(UUID).back().x == wavelengths.at(iw)){
-
4950 simulatedcolorboardspectra.at(UUID).back().y += icdata / float(numberwavelengths);
-
4951 }
-
4952 else if(simulatedcolorboardspectra.at(UUID).back().x !=wavelengths.at(iw)){
-
4953 simulatedcolorboardspectra.at(UUID).push_back(make_vec2(wavelengths.at(iw), icdata / float(numberwavelengths)));
-
4954 }
-
4955 }
-
4956 }
-
4957 }
-
4958 }
-
4959 // Update camera response spectra
-
4960 cameracalibration->updateCameraResponseSpectra(cameraresponselabels, calibratedmark ,simulatedcolorboardspectra, truevalues);
-
4961 // Reset color board spectra
-
4962 std::vector<uint> UUIDs_colorbd = cameracalibration->getColorBoardUUIDs();
-
4963 for (uint UUID:UUIDs_colorbd){
-
4964 std::string colorboardspectra;
-
4965 context->getPrimitiveData(UUID, "reflectivity_spectrum", colorboardspectra);
-
4966 context->setPrimitiveData(UUID, "reflectivity_spectrum", colorboardspectra+"_raw");
-
4967 }
-
4968}
+
4940 uint UUID = pixel_labels.at(j * calibratecamera.resolution.x + i)-1;
+
4941 if (find(UUIDs_target.begin(), UUIDs_target.end(), UUID) != UUIDs_target.end()){
+
4942 if ( simulatedcolorboardspectra.at(UUID).empty()){
+
4943 simulatedcolorboardspectra.at(UUID).push_back(make_vec2(wavelengths.at(iw), icdata / float(numberwavelengths)));
+
4944 }
+
4945 else if (simulatedcolorboardspectra.at(UUID).back().x == wavelengths.at(iw)){
+
4946 simulatedcolorboardspectra.at(UUID).back().y += icdata / float(numberwavelengths);
+
4947 }
+
4948 else if(simulatedcolorboardspectra.at(UUID).back().x !=wavelengths.at(iw)){
+
4949 simulatedcolorboardspectra.at(UUID).push_back(make_vec2(wavelengths.at(iw), icdata / float(numberwavelengths)));
+
4950 }
+
4951 }
+
4952 }
+
4953 }
+
4954 }
+
4955 // Update camera response spectra
+
4956 cameracalibration->updateCameraResponseSpectra(cameraresponselabels, calibratedmark ,simulatedcolorboardspectra, truevalues);
+
4957 // Reset color board spectra
+
4958 std::vector<uint> UUIDs_colorbd = cameracalibration->getColorBoardUUIDs();
+
4959 for (uint UUID:UUIDs_colorbd){
+
4960 std::string colorboardspectra;
+
4961 context->getPrimitiveData(UUID, "reflectivity_spectrum", colorboardspectra);
+
4962 context->setPrimitiveData(UUID, "reflectivity_spectrum", colorboardspectra+"_raw");
+
4963 }
+
4964}
+
4965
+
+
4966void RadiationModel::runRadiationImaging(const std::string& cameralabel, const std::vector<std::string>& sourcelabels, const std::vector<std::string>& bandlabels,
+
4967 const std::vector<std::string>& cameraresponselabels, helios::vec2 wavelengthrange,
+
4968 float fluxscale, float diffusefactor, uint scatteringdepth){
4969
-
-
4970void RadiationModel::runRadiationImaging(const std::string& cameralabel, const std::vector<std::string>& sourcelabels, const std::vector<std::string>& bandlabels,
-
4971 const std::vector<std::string>& cameraresponselabels, helios::vec2 wavelengthrange,
-
4972 float fluxscale, float diffusefactor, uint scatteringdepth){
-
4973
-
4974 float sources_fluxsum = 0;
-
4975 std::vector<float> sources_fluxes;
-
4976 for (uint ID = 0; ID < sourcelabels.size(); ID++){
-
4977 std::vector<vec2> Source_spectrum = loadSpectralData(sourcelabels.at(ID).c_str());
-
4978 sources_fluxes.push_back(RadiationModel::integrateSpectrum(Source_spectrum, wavelengthrange.x, wavelengthrange.y));
-
4979 RadiationModel::setSourceSpectrum(ID, sourcelabels.at(ID).c_str());
-
4980 RadiationModel::setSourceSpectrumIntegral(ID, sources_fluxes.at(ID));
-
4981 sources_fluxsum += sources_fluxes.at(ID);
-
4982 }
-
4983
-
4984 RadiationModel::addRadiationBand(bandlabels.at(0), wavelengthrange.x, wavelengthrange.y);
-
4985 RadiationModel::disableEmission(bandlabels.at(0));
-
4986 for( uint ID =0; ID<radiation_sources.size();ID++ ) {
-
4987 RadiationModel::setSourceFlux(ID, bandlabels.at(0), (1 - diffusefactor) * sources_fluxes.at(ID) * fluxscale);
-
4988 }
-
4989 RadiationModel::setScatteringDepth(bandlabels.at(0), scatteringdepth);
-
4990 RadiationModel::setDiffuseRadiationFlux(bandlabels.at(0), diffusefactor * sources_fluxsum );
-
4991 RadiationModel::setDiffuseRadiationExtinctionCoeff(bandlabels.at(0), 1.f, make_vec3(-0.5, 0.5, 1) );
-
4992
-
4993 if (bandlabels.size()>1){
-
4994 for (int iband=1;iband<bandlabels.size();iband++){
-
4995 RadiationModel::copyRadiationBand(bandlabels.at(iband-1), bandlabels.at(iband), wavelengthrange.x, wavelengthrange.y);
-
4996 for( uint ID =0; ID<radiation_sources.size();ID++ ) {
-
4997 RadiationModel::setSourceFlux(ID, bandlabels.at(iband), (1 - diffusefactor) * sources_fluxes.at(ID) * fluxscale);
-
4998 }
-
4999 RadiationModel::setDiffuseRadiationFlux(bandlabels.at(iband), diffusefactor * sources_fluxsum );
-
5000 }
+
4970 float sources_fluxsum = 0;
+
4971 std::vector<float> sources_fluxes;
+
4972 for (uint ID = 0; ID < sourcelabels.size(); ID++){
+
4973 std::vector<vec2> Source_spectrum = loadSpectralData(sourcelabels.at(ID).c_str());
+
4974 sources_fluxes.push_back(RadiationModel::integrateSpectrum(Source_spectrum, wavelengthrange.x, wavelengthrange.y));
+
4975 RadiationModel::setSourceSpectrum(ID, sourcelabels.at(ID).c_str());
+
4976 RadiationModel::setSourceSpectrumIntegral(ID, sources_fluxes.at(ID));
+
4977 sources_fluxsum += sources_fluxes.at(ID);
+
4978 }
+
4979
+
4980 RadiationModel::addRadiationBand(bandlabels.at(0), wavelengthrange.x, wavelengthrange.y);
+
4981 RadiationModel::disableEmission(bandlabels.at(0));
+
4982 for( uint ID =0; ID<radiation_sources.size();ID++ ) {
+
4983 RadiationModel::setSourceFlux(ID, bandlabels.at(0), (1 - diffusefactor) * sources_fluxes.at(ID) * fluxscale);
+
4984 }
+
4985 RadiationModel::setScatteringDepth(bandlabels.at(0), scatteringdepth);
+
4986 RadiationModel::setDiffuseRadiationFlux(bandlabels.at(0), diffusefactor * sources_fluxsum );
+
4987 RadiationModel::setDiffuseRadiationExtinctionCoeff(bandlabels.at(0), 1.f, make_vec3(-0.5, 0.5, 1) );
+
4988
+
4989 if (bandlabels.size()>1){
+
4990 for (int iband=1;iband<bandlabels.size();iband++){
+
4991 RadiationModel::copyRadiationBand(bandlabels.at(iband-1), bandlabels.at(iband), wavelengthrange.x, wavelengthrange.y);
+
4992 for( uint ID =0; ID<radiation_sources.size();ID++ ) {
+
4993 RadiationModel::setSourceFlux(ID, bandlabels.at(iband), (1 - diffusefactor) * sources_fluxes.at(ID) * fluxscale);
+
4994 }
+
4995 RadiationModel::setDiffuseRadiationFlux(bandlabels.at(iband), diffusefactor * sources_fluxsum );
+
4996 }
+
4997 }
+
4998
+
4999 for (int iband=0;iband<bandlabels.size();iband++){
+
5000 RadiationModel::setCameraSpectralResponse(cameralabel, bandlabels.at(iband), cameraresponselabels.at(iband));
5001 }
5002
-
5003 for (int iband=0;iband<bandlabels.size();iband++){
-
5004 RadiationModel::setCameraSpectralResponse(cameralabel, bandlabels.at(iband), cameraresponselabels.at(iband));
-
5005 }
-
5006
-
5007 RadiationModel::updateGeometry();
-
5008 RadiationModel::runBand(bandlabels);
-
5009}
+
5003 RadiationModel::updateGeometry();
+
5004 RadiationModel::runBand(bandlabels);
+
5005}
+
5006
+
+
5007void RadiationModel::runRadiationImaging(const std::vector<std::string>& cameralabels, const std::vector<std::string>& sourcelabels, const std::vector<std::string>& bandlabels,
+
5008 const std::vector<std::string>& cameraresponselabels, helios::vec2 wavelengthrange,
+
5009 float fluxscale, float diffusefactor, uint scatteringdepth){
5010
-
-
5011void RadiationModel::runRadiationImaging(const std::vector<std::string>& cameralabels, const std::vector<std::string>& sourcelabels, const std::vector<std::string>& bandlabels,
-
5012 const std::vector<std::string>& cameraresponselabels, helios::vec2 wavelengthrange,
-
5013 float fluxscale, float diffusefactor, uint scatteringdepth){
-
5014
-
5015 float sources_fluxsum = 0;
-
5016 std::vector<float> sources_fluxes;
-
5017 for (uint ID = 0; ID < sourcelabels.size(); ID++){
-
5018 std::vector<vec2> Source_spectrum = loadSpectralData(sourcelabels.at(ID).c_str());
-
5019 sources_fluxes.push_back(RadiationModel::integrateSpectrum(Source_spectrum, wavelengthrange.x, wavelengthrange.y));
-
5020 RadiationModel::setSourceSpectrum(ID, sourcelabels.at(ID).c_str());
-
5021 RadiationModel::setSourceSpectrumIntegral(ID, sources_fluxes.at(ID));
-
5022 sources_fluxsum += sources_fluxes.at(ID);
-
5023 }
-
5024
-
5025 RadiationModel::addRadiationBand(bandlabels.at(0), wavelengthrange.x, wavelengthrange.y);
-
5026 RadiationModel::disableEmission(bandlabels.at(0));
-
5027 for( uint ID =0; ID<radiation_sources.size();ID++ ) {
-
5028 RadiationModel::setSourceFlux(ID, bandlabels.at(0), (1 - diffusefactor) * sources_fluxes.at(ID) * fluxscale);
-
5029 }
-
5030 RadiationModel::setScatteringDepth(bandlabels.at(0), scatteringdepth);
-
5031 RadiationModel::setDiffuseRadiationFlux(bandlabels.at(0), diffusefactor * sources_fluxsum );
-
5032 RadiationModel::setDiffuseRadiationExtinctionCoeff(bandlabels.at(0), 1.f, make_vec3(-0.5, 0.5, 1) );
-
5033
-
5034 if (bandlabels.size()>1){
-
5035 for (int iband=1;iband<bandlabels.size();iband++){
-
5036 RadiationModel::copyRadiationBand(bandlabels.at(iband-1), bandlabels.at(iband), wavelengthrange.x, wavelengthrange.y);
-
5037 for( uint ID =0; ID<radiation_sources.size();ID++ ) {
-
5038 RadiationModel::setSourceFlux(ID, bandlabels.at(iband), (1 - diffusefactor) * sources_fluxes.at(ID) * fluxscale);
-
5039 }
-
5040 RadiationModel::setDiffuseRadiationFlux(bandlabels.at(iband), diffusefactor * sources_fluxsum );
-
5041 }
-
5042 }
-
5043
-
5044 for (int ic=0;ic<cameralabels.size();ic++){
-
5045 for (int iband=0;iband<bandlabels.size();iband++){
-
5046 RadiationModel::setCameraSpectralResponse(cameralabels.at(ic), bandlabels.at(iband), cameraresponselabels.at(iband));
-
5047 }
-
5048 }
-
5049
-
5050
-
5051 RadiationModel::updateGeometry();
-
5052 RadiationModel::runBand(bandlabels);
-
5053}
+
5011 float sources_fluxsum = 0;
+
5012 std::vector<float> sources_fluxes;
+
5013 for (uint ID = 0; ID < sourcelabels.size(); ID++){
+
5014 std::vector<vec2> Source_spectrum = loadSpectralData(sourcelabels.at(ID).c_str());
+
5015 sources_fluxes.push_back(RadiationModel::integrateSpectrum(Source_spectrum, wavelengthrange.x, wavelengthrange.y));
+
5016 RadiationModel::setSourceSpectrum(ID, sourcelabels.at(ID).c_str());
+
5017 RadiationModel::setSourceSpectrumIntegral(ID, sources_fluxes.at(ID));
+
5018 sources_fluxsum += sources_fluxes.at(ID);
+
5019 }
+
5020
+
5021 RadiationModel::addRadiationBand(bandlabels.at(0), wavelengthrange.x, wavelengthrange.y);
+
5022 RadiationModel::disableEmission(bandlabels.at(0));
+
5023 for( uint ID =0; ID<radiation_sources.size();ID++ ) {
+
5024 RadiationModel::setSourceFlux(ID, bandlabels.at(0), (1 - diffusefactor) * sources_fluxes.at(ID) * fluxscale);
+
5025 }
+
5026 RadiationModel::setScatteringDepth(bandlabels.at(0), scatteringdepth);
+
5027 RadiationModel::setDiffuseRadiationFlux(bandlabels.at(0), diffusefactor * sources_fluxsum );
+
5028 RadiationModel::setDiffuseRadiationExtinctionCoeff(bandlabels.at(0), 1.f, make_vec3(-0.5, 0.5, 1) );
+
5029
+
5030 if (bandlabels.size()>1){
+
5031 for (int iband=1;iband<bandlabels.size();iband++){
+
5032 RadiationModel::copyRadiationBand(bandlabels.at(iband-1), bandlabels.at(iband), wavelengthrange.x, wavelengthrange.y);
+
5033 for( uint ID =0; ID<radiation_sources.size();ID++ ) {
+
5034 RadiationModel::setSourceFlux(ID, bandlabels.at(iband), (1 - diffusefactor) * sources_fluxes.at(ID) * fluxscale);
+
5035 }
+
5036 RadiationModel::setDiffuseRadiationFlux(bandlabels.at(iband), diffusefactor * sources_fluxsum );
+
5037 }
+
5038 }
+
5039
+
5040 for (int ic=0;ic<cameralabels.size();ic++){
+
5041 for (int iband=0;iband<bandlabels.size();iband++){
+
5042 RadiationModel::setCameraSpectralResponse(cameralabels.at(ic), bandlabels.at(iband), cameraresponselabels.at(iband));
+
5043 }
+
5044 }
+
5045
+
5046
+
5047 RadiationModel::updateGeometry();
+
5048 RadiationModel::runBand(bandlabels);
+
5049}
+
5050
+
+
5051float RadiationModel::getCameraResponseScale(const std::string &orginalcameralabel, const std::vector<std::string>& cameraresponselabels,
+
5052 const std::vector<std::string>& bandlabels, const std::vector<std::string> &sourcelabels,
+
5053 vec2 &wavelengthrange, const std::vector<std::vector<float>> &truevalues){
5054
-
-
5055float RadiationModel::getCameraResponseScale(const std::string &orginalcameralabel, const std::vector<std::string>& cameraresponselabels,
-
5056 const std::vector<std::string>& bandlabels, const std::vector<std::string> &sourcelabels,
-
5057 vec2 &wavelengthrange, const std::vector<std::vector<float>> &truevalues){
-
5058
-
5059
-
5060 RadiationCamera calibratecamera = cameras.at(orginalcameralabel);
-
5061 CameraProperties cameraproperties;
-
5062 cameraproperties.HFOV = calibratecamera.HFOV_degrees;
-
5063 cameraproperties.camera_resolution = calibratecamera.resolution;
-
5064 cameraproperties.focal_plane_distance = calibratecamera.focal_length;
-
5065 cameraproperties.lens_diameter = calibratecamera.lens_diameter;
-
5066 cameraproperties.FOV_aspect_ratio = calibratecamera.FOV_aspect_ratio;
+
5055
+
5056 RadiationCamera calibratecamera = cameras.at(orginalcameralabel);
+
5057 CameraProperties cameraproperties;
+
5058 cameraproperties.HFOV = calibratecamera.HFOV_degrees;
+
5059 cameraproperties.camera_resolution = calibratecamera.resolution;
+
5060 cameraproperties.focal_plane_distance = calibratecamera.focal_length;
+
5061 cameraproperties.lens_diameter = calibratecamera.lens_diameter;
+
5062 cameraproperties.FOV_aspect_ratio = calibratecamera.FOV_aspect_ratio;
+
5063
+
5064 std::string cameralabel = orginalcameralabel+"Scale";
+
5065 RadiationModel::addRadiationCamera(cameralabel, bandlabels, calibratecamera.position, calibratecamera.lookat, cameraproperties,20);
+
5066 RadiationModel::runRadiationImaging(cameralabel, sourcelabels, bandlabels, cameraresponselabels, wavelengthrange, 1, 0);
5067
-
5068 std::string cameralabel = orginalcameralabel+"Scale";
-
5069 RadiationModel::addRadiationCamera(cameralabel, bandlabels, calibratecamera.position, calibratecamera.lookat, cameraproperties,20);
-
5070 RadiationModel::runRadiationImaging(cameralabel, sourcelabels, bandlabels, cameraresponselabels, wavelengthrange, 1, 0);
-
5071
-
5072 // Get camera spectral response scale based on comparing true values and calibrated image
-
5073 float camerascale = cameracalibration->getCameraResponseScale(cameralabel, cameraproperties.camera_resolution, bandlabels, truevalues);
-
5074 return camerascale;
-
5075}
+
5068 // Get camera spectral response scale based on comparing true values and calibrated image
+
5069 float camerascale = cameracalibration->getCameraResponseScale(cameralabel, cameraproperties.camera_resolution, bandlabels, truevalues);
+
5070 return camerascale;
+
5071}
-
5076
-
5077
-
-
5078void RadiationModel::writePrimitiveDataLabelMap(const std::string &cameralabel, const std::string &primitive_data_label, const std::string &imagefile_base, const std::string &image_path, int frame, float padvalue){
+
5072
+
5073
+
+
5074void RadiationModel::writePrimitiveDataLabelMap(const std::string &cameralabel, const std::string &primitive_data_label, const std::string &imagefile_base, const std::string &image_path, int frame, float padvalue){
+
5075
+
5076 if( cameras.find(cameralabel)==cameras.end() ){
+
5077 helios_runtime_error( "ERROR (RadiationModel::writePrimitiveDataLabelMap): Camera '" + cameralabel + "' does not exist." );
+
5078 }
5079
-
5080 if( cameras.find(cameralabel)==cameras.end() ){
-
5081 helios_runtime_error( "ERROR (RadiationModel::writePrimitiveDataLabelMap): Camera '" + cameralabel + "' does not exist." );
-
5082 }
-
5083
-
5084 //Get image UUID labels
-
5085 std::vector<uint> camera_UUIDs;
-
5086 std::string global_data_label = "camera_" + cameralabel + "_pixel_UUID";
-
5087 if( !context->doesGlobalDataExist(global_data_label.c_str() ) ){
-
5088 helios_runtime_error( "ERROR (RadiationModel::writePrimitiveDataLabelMap): Pixel labels for camera '" + cameralabel + "' do not exist. Was the radiation model run to generate labels?" );
-
5089 }
-
5090 context->getGlobalData(global_data_label.c_str(), camera_UUIDs);
-
5091 std::vector<uint> pixel_UUIDs = camera_UUIDs;
-
5092 int2 camera_resolution = cameras.at(cameralabel).resolution;
-
5093
-
5094 std::string frame_str;
-
5095 if( frame>=0 ) {
-
5096 frame_str = std::to_string(frame);
-
5097 }
-
5098
-
5099 std::ostringstream outfile;
+
5080 //Get image UUID labels
+
5081 std::vector<uint> camera_UUIDs;
+
5082 std::string global_data_label = "camera_" + cameralabel + "_pixel_UUID";
+
5083 if( !context->doesGlobalDataExist(global_data_label.c_str() ) ){
+
5084 helios_runtime_error( "ERROR (RadiationModel::writePrimitiveDataLabelMap): Pixel labels for camera '" + cameralabel + "' do not exist. Was the radiation model run to generate labels?" );
+
5085 }
+
5086 context->getGlobalData(global_data_label.c_str(), camera_UUIDs);
+
5087 std::vector<uint> pixel_UUIDs = camera_UUIDs;
+
5088 int2 camera_resolution = cameras.at(cameralabel).resolution;
+
5089
+
5090 std::string frame_str;
+
5091 if( frame>=0 ) {
+
5092 frame_str = std::to_string(frame);
+
5093 }
+
5094
+
5095 std::ostringstream outfile;
+
5096
+
5097 if( !validateOutputPath(outfile) ){
+
5098 helios_runtime_error("ERROR (RadiationModel::writeCameraImage): Invalid image output directory '" + outfile.str() + "'. Check that the path exists and that you have write permission.");
+
5099 }
5100
-
5101 if( image_path.find_last_of('/')==image_path.length()-1 ) {
-
5102 outfile << image_path;
-
5103 }else {
-
5104 outfile << image_path << "/";
+
5101 if( frame>=0 ) {
+
5102 outfile << cameralabel << "_" << imagefile_base << "_" << std::setw(5) << std::setfill('0') << frame_str << ".txt";
+
5103 }else{
+
5104 outfile << cameralabel << "_" << imagefile_base << ".txt";
5105 }
5106
-
5107 if( frame>=0 ) {
-
5108 outfile << cameralabel << "_" << imagefile_base << "_" << std::setw(5) << std::setfill('0') << frame_str << ".txt";
-
5109 }else{
-
5110 outfile << cameralabel << "_" << imagefile_base << ".txt";
-
5111 }
-
5112
-
5113 //Output label image in ".txt" format
-
5114 std::ofstream pixel_data(outfile.str());
-
5115
-
5116 if( !pixel_data.is_open() ){
-
5117 helios_runtime_error( "ERROR (RadiationModel::writePrimitiveDataLabelMap): Could not open file '" + outfile.str() + "' for writing." );
-
5118 }
-
5119
-
5120 bool empty_flag = true;
-
5121 for (uint j = 0; j < camera_resolution.y; j++) {
-
5122 for (uint i = 0; i < camera_resolution.x; i++) {
-
5123 uint ii = camera_resolution.x - i -1;
-
5124 uint UUID =pixel_UUIDs.at(j * camera_resolution.x + ii)-1;
-
5125 if (context->doesPrimitiveExist(UUID) && context->doesPrimitiveDataExist(UUID,primitive_data_label.c_str())){
-
5126 HeliosDataType datatype = context->getPrimitiveDataType(UUID,primitive_data_label.c_str());
-
5127 if( datatype == HELIOS_TYPE_FLOAT ){
-
5128 float labeldata;
+
5107 //Output label image in ".txt" format
+
5108 std::ofstream pixel_data(outfile.str());
+
5109
+
5110 if( !pixel_data.is_open() ){
+
5111 helios_runtime_error( "ERROR (RadiationModel::writePrimitiveDataLabelMap): Could not open file '" + outfile.str() + "' for writing." );
+
5112 }
+
5113
+
5114 bool empty_flag = true;
+
5115 for (uint j = 0; j < camera_resolution.y; j++) {
+
5116 for (uint i = 0; i < camera_resolution.x; i++) {
+
5117 uint ii = camera_resolution.x - i -1;
+
5118 uint UUID =pixel_UUIDs.at(j * camera_resolution.x + ii)-1;
+
5119 if (context->doesPrimitiveExist(UUID) && context->doesPrimitiveDataExist(UUID,primitive_data_label.c_str())){
+
5120 HeliosDataType datatype = context->getPrimitiveDataType(UUID,primitive_data_label.c_str());
+
5121 if( datatype == HELIOS_TYPE_FLOAT ){
+
5122 float labeldata;
+
5123 context->getPrimitiveData(UUID,primitive_data_label.c_str(),labeldata);
+
5124 pixel_data << labeldata << " ";
+
5125 empty_flag = false;
+
5126 }
+
5127 else if (datatype == HELIOS_TYPE_UINT){
+
5128 uint labeldata;
5129 context->getPrimitiveData(UUID,primitive_data_label.c_str(),labeldata);
5130 pixel_data << labeldata << " ";
5131 empty_flag = false;
5132 }
-
5133 else if (datatype == HELIOS_TYPE_UINT){
-
5134 uint labeldata;
+
5133 else if (datatype == HELIOS_TYPE_INT){
+
5134 int labeldata;
5135 context->getPrimitiveData(UUID,primitive_data_label.c_str(),labeldata);
5136 pixel_data << labeldata << " ";
5137 empty_flag = false;
5138 }
-
5139 else if (datatype == HELIOS_TYPE_INT){
-
5140 int labeldata;
+
5139 else if (datatype == HELIOS_TYPE_DOUBLE){
+
5140 double labeldata;
5141 context->getPrimitiveData(UUID,primitive_data_label.c_str(),labeldata);
5142 pixel_data << labeldata << " ";
5143 empty_flag = false;
-
5144 }
-
5145 else if (datatype == HELIOS_TYPE_DOUBLE){
-
5146 double labeldata;
-
5147 context->getPrimitiveData(UUID,primitive_data_label.c_str(),labeldata);
-
5148 pixel_data << labeldata << " ";
-
5149 empty_flag = false;
-
5150 }else{
-
5151 pixel_data << padvalue << " ";
-
5152 }
-
5153 }else{
-
5154 pixel_data << padvalue << " ";
-
5155 }
-
5156 }
-
5157 pixel_data << "\n";
-
5158 }
-
5159 pixel_data.close();
-
5160
-
5161 if( empty_flag ){
-
5162 std::cerr << "WARNING (RadiationModel::writePrimitiveDataLabelMap): No primitive data of " << primitive_data_label << " found in camera image. Primitive data map contains only padded values." << std::endl;
-
5163 }
-
5164
-
5165}
+
5144 }else{
+
5145 pixel_data << padvalue << " ";
+
5146 }
+
5147 }else{
+
5148 pixel_data << padvalue << " ";
+
5149 }
+
5150 }
+
5151 pixel_data << "\n";
+
5152 }
+
5153 pixel_data.close();
+
5154
+
5155 if( empty_flag ){
+
5156 std::cerr << "WARNING (RadiationModel::writePrimitiveDataLabelMap): No primitive data of " << primitive_data_label << " found in camera image. Primitive data map contains only padded values." << std::endl;
+
5157 }
+
5158
+
5159}
+
5160
+
+
5161void RadiationModel::writeObjectDataLabelMap(const std::string &cameralabel, const std::string &object_data_label, const std::string &imagefile_base, const std::string &image_path, int frame, float padvalue){
+
5162
+
5163 if( cameras.find(cameralabel)==cameras.end() ){
+
5164 helios_runtime_error( "ERROR (RadiationModel::writeObjectDataLabelMap): Camera '" + cameralabel + "' does not exist." );
+
5165 }
5166
-
-
5167void RadiationModel::writeObjectDataLabelMap(const std::string &cameralabel, const std::string &object_data_label, const std::string &imagefile_base, const std::string &image_path, int frame, float padvalue){
-
5168
-
5169 if( cameras.find(cameralabel)==cameras.end() ){
-
5170 helios_runtime_error( "ERROR (RadiationModel::writeObjectDataLabelMap): Camera '" + cameralabel + "' does not exist." );
-
5171 }
-
5172
-
5173 //Get image UUID labels
-
5174 std::vector<uint> camera_UUIDs;
-
5175 std::string global_data_label = "camera_" + cameralabel + "_pixel_UUID";
-
5176 if( !context->doesGlobalDataExist(global_data_label.c_str() ) ){
-
5177 helios_runtime_error( "ERROR (RadiationModel::writeObjectDataLabelMap): Pixel labels for camera '" + cameralabel + "' do not exist. Was the radiation model run to generate labels?" );
-
5178 }
-
5179 context->getGlobalData(global_data_label.c_str(), camera_UUIDs);
-
5180 std::vector<uint> pixel_UUIDs = camera_UUIDs;
-
5181 int2 camera_resolution = cameras.at(cameralabel).resolution;
-
5182
-
5183 std::string frame_str;
-
5184 if( frame>=0 ) {
-
5185 frame_str = std::to_string(frame);
+
5167 //Get image UUID labels
+
5168 std::vector<uint> camera_UUIDs;
+
5169 std::string global_data_label = "camera_" + cameralabel + "_pixel_UUID";
+
5170 if( !context->doesGlobalDataExist(global_data_label.c_str() ) ){
+
5171 helios_runtime_error( "ERROR (RadiationModel::writeObjectDataLabelMap): Pixel labels for camera '" + cameralabel + "' do not exist. Was the radiation model run to generate labels?" );
+
5172 }
+
5173 context->getGlobalData(global_data_label.c_str(), camera_UUIDs);
+
5174 std::vector<uint> pixel_UUIDs = camera_UUIDs;
+
5175 int2 camera_resolution = cameras.at(cameralabel).resolution;
+
5176
+
5177 std::string frame_str;
+
5178 if( frame>=0 ) {
+
5179 frame_str = std::to_string(frame);
+
5180 }
+
5181
+
5182 std::ostringstream outfile;
+
5183
+
5184 if( !validateOutputPath(outfile) ){
+
5185 helios_runtime_error("ERROR (RadiationModel::writeCameraImage): Invalid image output directory '" + outfile.str() + "'. Check that the path exists and that you have write permission.");
5186 }
5187
-
5188 std::ostringstream outfile;
-
5189
-
5190 if( image_path.find_last_of('/')==image_path.length()-1 ) {
-
5191 outfile << image_path;
-
5192 }else {
-
5193 outfile << image_path << "/";
-
5194 }
-
5195
-
5196 if( frame>=0 ) {
-
5197 outfile << cameralabel << "_" << imagefile_base << "_" << std::setw(5) << std::setfill('0') << frame_str << ".txt";
-
5198 }else{
-
5199 outfile << cameralabel << "_" << imagefile_base << ".txt";
-
5200 }
-
5201
-
5202 //Output label image in ".txt" format
-
5203 std::ofstream pixel_data(outfile.str());
-
5204
-
5205 if( !pixel_data.is_open() ){
-
5206 helios_runtime_error( "ERROR (RadiationModel::writeObjectDataLabelMap): Could not open file '" + outfile.str() + "' for writing." );
-
5207 }
-
5208
-
5209 bool empty_flag = true;
-
5210 for (uint j = 0; j < camera_resolution.y; j++) {
-
5211 for (uint i = 0; i < camera_resolution.x; i++) {
-
5212 uint ii = camera_resolution.x - i -1;
-
5213 uint UUID =pixel_UUIDs.at(j * camera_resolution.x + ii)-1;
-
5214 uint objID = context->getPrimitiveParentObjectID(UUID);
-
5215 if (context->doesObjectExist(objID) && context->doesObjectDataExist(objID,object_data_label.c_str())){
-
5216 HeliosDataType datatype = context->getObjectDataType(objID,object_data_label.c_str());
-
5217 if( datatype == HELIOS_TYPE_FLOAT ){
-
5218 float labeldata;
-
5219 context->getObjectData(UUID,object_data_label.c_str(),labeldata);
-
5220 pixel_data << labeldata << " ";
-
5221 empty_flag = false;
-
5222 }
-
5223 else if (datatype == HELIOS_TYPE_UINT){
-
5224 uint labeldata;
-
5225 context->getObjectData(UUID,object_data_label.c_str(),labeldata);
-
5226 pixel_data << labeldata << " ";
-
5227 empty_flag = false;
-
5228 }
-
5229 else if (datatype == HELIOS_TYPE_INT){
-
5230 int labeldata;
-
5231 context->getObjectData(UUID,object_data_label.c_str(),labeldata);
-
5232 pixel_data << labeldata << " ";
-
5233 empty_flag = false;
+
5188 if( frame>=0 ) {
+
5189 outfile << cameralabel << "_" << imagefile_base << "_" << std::setw(5) << std::setfill('0') << frame_str << ".txt";
+
5190 }else{
+
5191 outfile << cameralabel << "_" << imagefile_base << ".txt";
+
5192 }
+
5193
+
5194 //Output label image in ".txt" format
+
5195 std::ofstream pixel_data(outfile.str());
+
5196
+
5197 if( !pixel_data.is_open() ){
+
5198 helios_runtime_error( "ERROR (RadiationModel::writeObjectDataLabelMap): Could not open file '" + outfile.str() + "' for writing." );
+
5199 }
+
5200
+
5201 bool empty_flag = true;
+
5202 for (uint j = 0; j < camera_resolution.y; j++) {
+
5203 for (uint i = 0; i < camera_resolution.x; i++) {
+
5204 uint ii = camera_resolution.x - i -1;
+
5205 uint UUID =pixel_UUIDs.at(j * camera_resolution.x + ii)-1;
+
5206 uint objID = context->getPrimitiveParentObjectID(UUID);
+
5207 if (context->doesObjectExist(objID) && context->doesObjectDataExist(objID,object_data_label.c_str())){
+
5208 HeliosDataType datatype = context->getObjectDataType(objID,object_data_label.c_str());
+
5209 if( datatype == HELIOS_TYPE_FLOAT ){
+
5210 float labeldata;
+
5211 context->getObjectData(UUID,object_data_label.c_str(),labeldata);
+
5212 pixel_data << labeldata << " ";
+
5213 empty_flag = false;
+
5214 }
+
5215 else if (datatype == HELIOS_TYPE_UINT){
+
5216 uint labeldata;
+
5217 context->getObjectData(UUID,object_data_label.c_str(),labeldata);
+
5218 pixel_data << labeldata << " ";
+
5219 empty_flag = false;
+
5220 }
+
5221 else if (datatype == HELIOS_TYPE_INT){
+
5222 int labeldata;
+
5223 context->getObjectData(UUID,object_data_label.c_str(),labeldata);
+
5224 pixel_data << labeldata << " ";
+
5225 empty_flag = false;
+
5226 }
+
5227 else if (datatype == HELIOS_TYPE_DOUBLE){
+
5228 double labeldata;
+
5229 context->getObjectData(UUID,object_data_label.c_str(),labeldata);
+
5230 pixel_data << labeldata << " ";
+
5231 empty_flag = false;
+
5232 }else{
+
5233 pixel_data << padvalue << " ";
5234 }
-
5235 else if (datatype == HELIOS_TYPE_DOUBLE){
-
5236 double labeldata;
-
5237 context->getObjectData(UUID,object_data_label.c_str(),labeldata);
-
5238 pixel_data << labeldata << " ";
-
5239 empty_flag = false;
-
5240 }else{
-
5241 pixel_data << padvalue << " ";
-
5242 }
-
5243 }else{
-
5244 pixel_data << padvalue << " ";
-
5245 }
-
5246 }
-
5247 pixel_data << "\n";
-
5248 }
-
5249 pixel_data.close();
+
5235 }else{
+
5236 pixel_data << padvalue << " ";
+
5237 }
+
5238 }
+
5239 pixel_data << "\n";
+
5240 }
+
5241 pixel_data.close();
+
5242
+
5243 if( empty_flag ){
+
5244 std::cerr << "WARNING (RadiationModel::writeObjectDataLabelMap): No object data of " << object_data_label << " found in camera image. Object data map contains only padded values." << std::endl;
+
5245 }
+
5246
+
5247}
+
+
5248
+
+
5249void RadiationModel::writeDepthImageData(const std::string &cameralabel, const std::string &imagefile_base, const std::string &image_path, int frame) {
5250
-
5251 if( empty_flag ){
-
5252 std::cerr << "WARNING (RadiationModel::writeObjectDataLabelMap): No object data of " << object_data_label << " found in camera image. Object data map contains only padded values." << std::endl;
+
5251 if( cameras.find(cameralabel)==cameras.end() ){
+
5252 helios_runtime_error( "ERROR (RadiationModel::writeDepthImageData): Camera '" + cameralabel + "' does not exist." );
5253 }
5254
-
5255}
+
5255 std::string global_data_label = "camera_" + cameralabel + "_pixel_depth";
+
5256 if( !context->doesGlobalDataExist(global_data_label.c_str()) ){
+
5257 helios_runtime_error("ERROR (RadiationModel::writeDepthImageData): Depth data for camera '" + cameralabel + "' does not exist. Was the radiation model run for the camera?" );
+
5258 }
+
5259 std::vector<float> camera_depth;
+
5260 context->getGlobalData(global_data_label.c_str(), camera_depth);
+
5261 helios::vec3 camera_position = cameras.at(cameralabel).position;
+
5262 helios::vec3 camera_lookat = cameras.at(cameralabel).lookat;
+
5263
+
5264 int2 camera_resolution = cameras.at(cameralabel).resolution;
+
5265
+
5266 std::string frame_str;
+
5267 if( frame>=0 ) {
+
5268 frame_str = std::to_string(frame);
+
5269 }
+
5270
+
5271 std::ostringstream outfile;
+
5272
+
5273 if( !validateOutputPath(outfile) ){
+
5274 helios_runtime_error("ERROR (RadiationModel::writeCameraImage): Invalid image output directory '" + outfile.str() + "'. Check that the path exists and that you have write permission.");
+
5275 }
+
5276
+
5277 if( frame>=0 ) {
+
5278 outfile << cameralabel << "_" << imagefile_base << "_" << std::setw(5) << std::setfill('0') << frame_str << ".txt";
+
5279 }else{
+
5280 outfile << cameralabel << "_" << imagefile_base << ".txt";
+
5281 }
+
5282
+
5283 //Output label image in ".txt" format
+
5284 std::ofstream pixel_data(outfile.str());
+
5285
+
5286 if( !pixel_data.is_open() ){
+
5287 helios_runtime_error( "ERROR (RadiationModel::writeDepthImageData): Could not open file '" + outfile.str() + "' for writing." );
+
5288 }
+
5289
+
5290 for ( int j = 0; j<camera_resolution.y; j++ ) {
+
5291 for ( int i = camera_resolution.x-1; i >= 0; i--) {
+
5292 pixel_data << camera_depth.at(j*camera_resolution.x + i) << " ";
+
5293 }
+
5294 pixel_data << "\n";
+
5295 }
+
5296
+
5297 pixel_data.close();
+
5298
+
5299}
-
5256
-
-
5257void RadiationModel::writeDepthImageData(const std::string &cameralabel, const std::string &imagefile_base, const std::string &image_path, int frame) {
-
5258
-
5259 if( cameras.find(cameralabel)==cameras.end() ){
-
5260 helios_runtime_error( "ERROR (RadiationModel::writeDepthImageData): Camera '" + cameralabel + "' does not exist." );
-
5261 }
-
5262
-
5263 std::string global_data_label = "camera_" + cameralabel + "_pixel_depth";
-
5264 if( !context->doesGlobalDataExist(global_data_label.c_str()) ){
-
5265 helios_runtime_error("ERROR (RadiationModel::writeDepthImageData): Depth data for camera '" + cameralabel + "' does not exist. Was the radiation model run for the camera?" );
-
5266 }
-
5267 std::vector<float> camera_depth;
-
5268 context->getGlobalData(global_data_label.c_str(), camera_depth);
-
5269 helios::vec3 camera_position = cameras.at(cameralabel).position;
-
5270 helios::vec3 camera_lookat = cameras.at(cameralabel).lookat;
-
5271
-
5272 int2 camera_resolution = cameras.at(cameralabel).resolution;
-
5273
-
5274 std::string frame_str;
-
5275 if( frame>=0 ) {
-
5276 frame_str = std::to_string(frame);
-
5277 }
-
5278
-
5279 std::ostringstream outfile;
-
5280
-
5281 if( image_path.find_last_of('/')==image_path.length()-1 ) {
-
5282 outfile << image_path;
-
5283 }else {
-
5284 outfile << image_path << "/";
-
5285 }
-
5286
-
5287 if( frame>=0 ) {
-
5288 outfile << cameralabel << "_" << imagefile_base << "_" << std::setw(5) << std::setfill('0') << frame_str << ".txt";
-
5289 }else{
-
5290 outfile << cameralabel << "_" << imagefile_base << ".txt";
-
5291 }
-
5292
-
5293 //Output label image in ".txt" format
-
5294 std::ofstream pixel_data(outfile.str());
-
5295
-
5296 if( !pixel_data.is_open() ){
-
5297 helios_runtime_error( "ERROR (RadiationModel::writeDepthImageData): Could not open file '" + outfile.str() + "' for writing." );
-
5298 }
-
5299
-
5300 for ( int j = 0; j<camera_resolution.y; j++ ) {
-
5301 for ( int i = camera_resolution.x-1; i >= 0; i--) {
-
5302 pixel_data << camera_depth.at(j*camera_resolution.x + i) << " ";
-
5303 }
-
5304 pixel_data << "\n";
+
5300
+
+
5301void RadiationModel::writeNormDepthImage(const std::string &cameralabel, const std::string &imagefile_base, float max_depth, const std::string &image_path, int frame){
+
5302
+
5303 if( cameras.find(cameralabel)==cameras.end() ){
+
5304 helios_runtime_error( "ERROR (RadiationModel::writeNormDepthImage): Camera '" + cameralabel + "' does not exist." );
5305 }
5306
-
5307 pixel_data.close();
-
5308
-
5309}
-
-
5310
-
-
5311void RadiationModel::writeNormDepthImage(const std::string &cameralabel, const std::string &imagefile_base, float max_depth, const std::string &image_path, int frame){
-
5312
-
5313 if( cameras.find(cameralabel)==cameras.end() ){
-
5314 helios_runtime_error( "ERROR (RadiationModel::writeNormDepthImage): Camera '" + cameralabel + "' does not exist." );
-
5315 }
-
5316
-
5317 std::string global_data_label = "camera_" + cameralabel + "_pixel_depth";
-
5318 if( !context->doesGlobalDataExist(global_data_label.c_str()) ){
-
5319 helios_runtime_error("ERROR (RadiationModel::writeNormDepthImage): Depth data for camera '" + cameralabel + "' does not exist. Was the radiation model run for the camera?" );
-
5320 }
-
5321 std::vector<float> camera_depth;
-
5322 context->getGlobalData(global_data_label.c_str(), camera_depth);
-
5323 helios::vec3 camera_position = cameras.at(cameralabel).position;
-
5324 helios::vec3 camera_lookat = cameras.at(cameralabel).lookat;
-
5325
-
5326 int2 camera_resolution = cameras.at(cameralabel).resolution;
-
5327
-
5328 std::string frame_str;
+
5307 std::string global_data_label = "camera_" + cameralabel + "_pixel_depth";
+
5308 if( !context->doesGlobalDataExist(global_data_label.c_str()) ){
+
5309 helios_runtime_error("ERROR (RadiationModel::writeNormDepthImage): Depth data for camera '" + cameralabel + "' does not exist. Was the radiation model run for the camera?" );
+
5310 }
+
5311 std::vector<float> camera_depth;
+
5312 context->getGlobalData(global_data_label.c_str(), camera_depth);
+
5313 helios::vec3 camera_position = cameras.at(cameralabel).position;
+
5314 helios::vec3 camera_lookat = cameras.at(cameralabel).lookat;
+
5315
+
5316 int2 camera_resolution = cameras.at(cameralabel).resolution;
+
5317
+
5318 std::string frame_str;
+
5319 if( frame>=0 ) {
+
5320 frame_str = std::to_string(frame);
+
5321 }
+
5322
+
5323 std::ostringstream outfile;
+
5324
+
5325 if( !validateOutputPath(outfile) ){
+
5326 helios_runtime_error("ERROR (RadiationModel::writeCameraImage): Invalid image output directory '" + outfile.str() + "'. Check that the path exists and that you have write permission.");
+
5327 }
+
5328
5329 if( frame>=0 ) {
-
5330 frame_str = std::to_string(frame);
-
5331 }
-
5332
-
5333 std::ostringstream outfile;
+
5330 outfile << cameralabel << "_" << imagefile_base << "_" << std::setw(5) << std::setfill('0') << frame_str << ".jpeg";
+
5331 }else{
+
5332 outfile << cameralabel << "_" << imagefile_base << ".jpeg";
+
5333 }
5334
-
5335 if( image_path.find_last_of('/')==image_path.length()-1 ) {
-
5336 outfile << image_path;
-
5337 }else {
-
5338 outfile << image_path << "/";
-
5339 }
-
5340
-
5341 if( frame>=0 ) {
-
5342 outfile << cameralabel << "_" << imagefile_base << "_" << std::setw(5) << std::setfill('0') << frame_str << ".jpeg";
-
5343 }else{
-
5344 outfile << cameralabel << "_" << imagefile_base << ".jpeg";
-
5345 }
-
5346
-
5347 float min_depth = 99999;
-
5348 for( int i=0; i<camera_depth.size(); i++ ){
-
5349 if( camera_depth.at(i)<0 || camera_depth.at(i)>max_depth ){
-
5350 camera_depth.at(i) = max_depth;
-
5351 }
-
5352 if( camera_depth.at(i)<min_depth ){
-
5353 min_depth = camera_depth.at(i);
-
5354 }
-
5355 }
-
5356 for( int i=0; i<camera_depth.size(); i++ ){
-
5357 camera_depth.at(i) = 1.f-(camera_depth.at(i)-min_depth)/(max_depth-min_depth);
-
5358 }
-
5359
-
5360 std::vector<RGBcolor> pixel_data(camera_resolution.x*camera_resolution.y);
-
5361
-
5362 RGBcolor pixel_color;
-
5363 for (uint j = 0; j < camera_resolution.y; j++) {
-
5364 for (uint i=0; i < camera_resolution.x; i++) {
-
5365
-
5366 float c = camera_depth.at(j * camera_resolution.x + i);
-
5367 pixel_color = make_RGBcolor(c,c,c);
-
5368
-
5369 uint ii = camera_resolution.x - i -1;
-
5370 uint jj = camera_resolution.y - j - 1;
-
5371 pixel_data.at(jj * camera_resolution.x + ii) = pixel_color;
-
5372 }
-
5373 }
-
5374
-
5375 writeJPEG( outfile.str(), camera_resolution.x, camera_resolution.y, pixel_data );
-
5376
-
5377}
+
5335 float min_depth = 99999;
+
5336 for( int i=0; i<camera_depth.size(); i++ ){
+
5337 if( camera_depth.at(i)<0 || camera_depth.at(i)>max_depth ){
+
5338 camera_depth.at(i) = max_depth;
+
5339 }
+
5340 if( camera_depth.at(i)<min_depth ){
+
5341 min_depth = camera_depth.at(i);
+
5342 }
+
5343 }
+
5344 for( int i=0; i<camera_depth.size(); i++ ){
+
5345 camera_depth.at(i) = 1.f-(camera_depth.at(i)-min_depth)/(max_depth-min_depth);
+
5346 }
+
5347
+
5348 std::vector<RGBcolor> pixel_data(camera_resolution.x*camera_resolution.y);
+
5349
+
5350 RGBcolor pixel_color;
+
5351 for (uint j = 0; j < camera_resolution.y; j++) {
+
5352 for (uint i=0; i < camera_resolution.x; i++) {
+
5353
+
5354 float c = camera_depth.at(j * camera_resolution.x + i);
+
5355 pixel_color = make_RGBcolor(c,c,c);
+
5356
+
5357 uint ii = camera_resolution.x - i -1;
+
5358 uint jj = camera_resolution.y - j - 1;
+
5359 pixel_data.at(jj * camera_resolution.x + ii) = pixel_color;
+
5360 }
+
5361 }
+
5362
+
5363 writeJPEG( outfile.str(), camera_resolution.x, camera_resolution.y, pixel_data );
+
5364
+
5365}
-
5378
-
5379
-
-
5380void RadiationModel::writeImageBoundingBoxes(const std::string &cameralabel, const std::string &primitive_data_label, uint object_class_ID, const std::string &imagefile_base, const std::string &image_path, bool append_label_file, int frame){
-
5381
-
5382 if( cameras.find(cameralabel)==cameras.end() ){
-
5383 helios_runtime_error( "ERROR (RadiationModel::writeImageBoundingBoxes): Camera '" + cameralabel + "' does not exist." );
-
5384 }
-
5385
-
5386 //Get image UUID labels
-
5387 std::vector<uint> camera_UUIDs;
-
5388 std::string global_data_label = "camera_" + cameralabel + "_pixel_UUID";
-
5389 if( !context->doesGlobalDataExist(global_data_label.c_str() ) ){
-
5390 helios_runtime_error( "ERROR (RadiationModel::writeImageBoundingBoxes): Pixel labels for camera '" + cameralabel + "' do not exist. Was the radiation model run to generate labels?" );
-
5391 }
-
5392 context->getGlobalData(global_data_label.c_str(), camera_UUIDs);
-
5393 std::vector<uint> pixel_UUIDs = camera_UUIDs;
-
5394 int2 camera_resolution = cameras.at(cameralabel).resolution;
-
5395
-
5396 std::string frame_str;
-
5397 if( frame>=0 ) {
-
5398 frame_str = std::to_string(frame);
+
5366
+
5367
+
+
5368void RadiationModel::writeImageBoundingBoxes(const std::string &cameralabel, const std::string &primitive_data_label, uint object_class_ID, const std::string &imagefile_base, const std::string &image_path, bool append_label_file, int frame){
+
5369
+
5370 if( cameras.find(cameralabel)==cameras.end() ){
+
5371 helios_runtime_error( "ERROR (RadiationModel::writeImageBoundingBoxes): Camera '" + cameralabel + "' does not exist." );
+
5372 }
+
5373
+
5374 //Get image UUID labels
+
5375 std::vector<uint> camera_UUIDs;
+
5376 std::string global_data_label = "camera_" + cameralabel + "_pixel_UUID";
+
5377 if( !context->doesGlobalDataExist(global_data_label.c_str() ) ){
+
5378 helios_runtime_error( "ERROR (RadiationModel::writeImageBoundingBoxes): Pixel labels for camera '" + cameralabel + "' do not exist. Was the radiation model run to generate labels?" );
+
5379 }
+
5380 context->getGlobalData(global_data_label.c_str(), camera_UUIDs);
+
5381 std::vector<uint> pixel_UUIDs = camera_UUIDs;
+
5382 int2 camera_resolution = cameras.at(cameralabel).resolution;
+
5383
+
5384 std::string frame_str;
+
5385 if( frame>=0 ) {
+
5386 frame_str = std::to_string(frame);
+
5387 }
+
5388
+
5389 std::ostringstream outfile;
+
5390
+
5391 if( !validateOutputPath(outfile) ){
+
5392 helios_runtime_error("ERROR (RadiationModel::writeCameraImage): Invalid image output directory '" + outfile.str() + "'. Check that the path exists and that you have write permission.");
+
5393 }
+
5394
+
5395 if( frame>=0 ) {
+
5396 outfile << cameralabel << "_" << imagefile_base << "_" << std::setw(5) << std::setfill('0') << frame_str << ".txt";
+
5397 }else{
+
5398 outfile << cameralabel << "_" << imagefile_base << ".txt";
5399 }
5400
-
5401 std::ostringstream outfile;
-
5402
-
5403 if( image_path.find_last_of('/')==image_path.length()-1 ) {
-
5404 outfile << image_path;
-
5405 }else {
-
5406 outfile << image_path << "/";
+
5401 //Output label image in ".txt" format
+
5402 std::ofstream label_file;
+
5403 if( append_label_file ){
+
5404 label_file.open(outfile.str(), std::ios::out | std::ios::app);
+
5405 }else{
+
5406 label_file.open(outfile.str());
5407 }
5408
-
5409 if( frame>=0 ) {
-
5410 outfile << cameralabel << "_" << imagefile_base << "_" << std::setw(5) << std::setfill('0') << frame_str << ".txt";
-
5411 }else{
-
5412 outfile << cameralabel << "_" << imagefile_base << ".txt";
-
5413 }
+
5409 if( !label_file.is_open() ){
+
5410 helios_runtime_error( "ERROR (RadiationModel::writeImageBoundingBoxes): Could not open file '" + outfile.str() + "'." );
+
5411 }
+
5412
+
5413 std::map<int, vec4> pdata_bounds;
5414
-
5415 //Output label image in ".txt" format
-
5416 std::ofstream label_file;
-
5417 if( append_label_file ){
-
5418 label_file.open(outfile.str(), std::ios::out | std::ios::app);
-
5419 }else{
-
5420 label_file.open(outfile.str());
-
5421 }
+
5415 for (int j = 0; j < camera_resolution.y; j++) {
+
5416 for (int i = 0; i < camera_resolution.x; i++) {
+
5417 uint ii = camera_resolution.x - i -1;
+
5418 uint UUID =pixel_UUIDs.at(j * camera_resolution.x + ii)-1;
+
5419 if (context->doesPrimitiveExist(UUID) && context->doesPrimitiveDataExist(UUID,primitive_data_label.c_str())){
+
5420
+
5421 uint labeldata;
5422
-
5423 if( !label_file.is_open() ){
-
5424 helios_runtime_error( "ERROR (RadiationModel::writeImageBoundingBoxes): Could not open file '" + outfile.str() + "'." );
-
5425 }
-
5426
-
5427 std::map<int, vec4> pdata_bounds;
-
5428
-
5429 for (int j = 0; j < camera_resolution.y; j++) {
-
5430 for (int i = 0; i < camera_resolution.x; i++) {
-
5431 uint ii = camera_resolution.x - i -1;
-
5432 uint UUID =pixel_UUIDs.at(j * camera_resolution.x + ii)-1;
-
5433 if (context->doesPrimitiveExist(UUID) && context->doesPrimitiveDataExist(UUID,primitive_data_label.c_str())){
-
5434
-
5435 uint labeldata;
+
5423 HeliosDataType datatype = context->getPrimitiveDataType(UUID,primitive_data_label.c_str());
+
5424 if (datatype == HELIOS_TYPE_UINT){
+
5425 uint labeldata_ui;
+
5426 context->getPrimitiveData(UUID,primitive_data_label.c_str(),labeldata_ui);
+
5427 labeldata = labeldata_ui;
+
5428 }
+
5429 else if (datatype == HELIOS_TYPE_INT){
+
5430 int labeldata_i;
+
5431 context->getPrimitiveData(UUID,primitive_data_label.c_str(),labeldata_i);
+
5432 labeldata = (uint)labeldata_i;
+
5433 }else{
+
5434 continue;
+
5435 }
5436
-
5437 HeliosDataType datatype = context->getPrimitiveDataType(UUID,primitive_data_label.c_str());
-
5438 if (datatype == HELIOS_TYPE_UINT){
-
5439 uint labeldata_ui;
-
5440 context->getPrimitiveData(UUID,primitive_data_label.c_str(),labeldata_ui);
-
5441 labeldata = labeldata_ui;
-
5442 }
-
5443 else if (datatype == HELIOS_TYPE_INT){
-
5444 int labeldata_i;
-
5445 context->getPrimitiveData(UUID,primitive_data_label.c_str(),labeldata_i);
-
5446 labeldata = (uint)labeldata_i;
-
5447 }else{
-
5448 continue;
+
5437 if( pdata_bounds.find(labeldata) == pdata_bounds.end() ) {
+
5438 pdata_bounds[labeldata] = make_vec4(1e6, -1, 1e6, -1);
+
5439 }
+
5440
+
5441 if( i<pdata_bounds[labeldata].x ){
+
5442 pdata_bounds[labeldata].x = i;
+
5443 }
+
5444 if( i>pdata_bounds[labeldata].y ){
+
5445 pdata_bounds[labeldata].y = i;
+
5446 }
+
5447 if( j<pdata_bounds[labeldata].z ){
+
5448 pdata_bounds[labeldata].z = j;
5449 }
-
5450
-
5451 if( pdata_bounds.find(labeldata) == pdata_bounds.end() ) {
-
5452 pdata_bounds[labeldata] = make_vec4(1e6, -1, 1e6, -1);
-
5453 }
-
5454
-
5455 if( i<pdata_bounds[labeldata].x ){
-
5456 pdata_bounds[labeldata].x = i;
-
5457 }
-
5458 if( i>pdata_bounds[labeldata].y ){
-
5459 pdata_bounds[labeldata].y = i;
-
5460 }
-
5461 if( j<pdata_bounds[labeldata].z ){
-
5462 pdata_bounds[labeldata].z = j;
-
5463 }
-
5464 if( j>pdata_bounds[labeldata].w ){
-
5465 pdata_bounds[labeldata].w = j;
-
5466 }
-
5467
-
5468 }
-
5469 }
-
5470 }
-
5471
-
5472 for( auto box : pdata_bounds ){
-
5473 vec4 bbox = box.second;
-
5474 if( bbox.x==bbox.y || bbox.z==bbox.w ){ //filter boxes of zeros size
-
5475 continue;
-
5476 }
-
5477 label_file << object_class_ID << " " << (bbox.x + 0.5 * (bbox.y - bbox.x)) / float(camera_resolution.x) << " "
-
5478 << (bbox.z + 0.5 * (bbox.w - bbox.z)) / float(camera_resolution.y) << " " << std::setprecision(6)
-
5479 << std::fixed << (bbox.y - bbox.x) / float(camera_resolution.x) << " "
-
5480 << (bbox.w - bbox.z) / float(camera_resolution.y) << std::endl;
-
5481 }
-
5482
-
5483 label_file.close();
-
5484
-
5485}
+
5450 if( j>pdata_bounds[labeldata].w ){
+
5451 pdata_bounds[labeldata].w = j;
+
5452 }
+
5453
+
5454 }
+
5455 }
+
5456 }
+
5457
+
5458 for( auto box : pdata_bounds ){
+
5459 vec4 bbox = box.second;
+
5460 if( bbox.x==bbox.y || bbox.z==bbox.w ){ //filter boxes of zeros size
+
5461 continue;
+
5462 }
+
5463 label_file << object_class_ID << " " << (bbox.x + 0.5 * (bbox.y - bbox.x)) / float(camera_resolution.x) << " "
+
5464 << (bbox.z + 0.5 * (bbox.w - bbox.z)) / float(camera_resolution.y) << " " << std::setprecision(6)
+
5465 << std::fixed << (bbox.y - bbox.x) / float(camera_resolution.x) << " "
+
5466 << (bbox.w - bbox.z) / float(camera_resolution.y) << std::endl;
+
5467 }
+
5468
+
5469 label_file.close();
+
5470
+
5471}
-
5486
-
-
5487void RadiationModel::writeImageBoundingBoxes_ObjectData(const std::string &cameralabel, const std::string &object_data_label, uint object_class_ID, const std::string &imagefile_base, const std::string &image_path, bool append_label_file, int frame){
+
5472
+
+
5473void RadiationModel::writeImageBoundingBoxes_ObjectData(const std::string &cameralabel, const std::string &object_data_label, uint object_class_ID, const std::string &imagefile_base, const std::string &image_path, bool append_label_file, int frame){
+
5474
+
5475 if( cameras.find(cameralabel)==cameras.end() ){
+
5476 helios_runtime_error( "ERROR (RadiationModel::writeImageBoundingBoxes_ObjectData): Camera '" + cameralabel + "' does not exist." );
+
5477 }
+
5478
+
5479 //Get image UUID labels
+
5480 std::vector<uint> camera_UUIDs;
+
5481 std::string global_data_label = "camera_" + cameralabel + "_pixel_UUID";
+
5482 if( !context->doesGlobalDataExist(global_data_label.c_str() ) ){
+
5483 helios_runtime_error( "ERROR (RadiationModel::writeImageBoundingBoxes_ObjectData): Pixel labels for camera '" + cameralabel + "' do not exist. Was the radiation model run to generate labels?" );
+
5484 }
+
5485 context->getGlobalData(global_data_label.c_str(), camera_UUIDs);
+
5486 std::vector<uint> pixel_UUIDs = camera_UUIDs;
+
5487 int2 camera_resolution = cameras.at(cameralabel).resolution;
5488
-
5489 if( cameras.find(cameralabel)==cameras.end() ){
-
5490 helios_runtime_error( "ERROR (RadiationModel::writeImageBoundingBoxes_ObjectData): Camera '" + cameralabel + "' does not exist." );
-
5491 }
-
5492
-
5493 //Get image UUID labels
-
5494 std::vector<uint> camera_UUIDs;
-
5495 std::string global_data_label = "camera_" + cameralabel + "_pixel_UUID";
-
5496 if( !context->doesGlobalDataExist(global_data_label.c_str() ) ){
-
5497 helios_runtime_error( "ERROR (RadiationModel::writeImageBoundingBoxes_ObjectData): Pixel labels for camera '" + cameralabel + "' do not exist. Was the radiation model run to generate labels?" );
+
5489 std::string frame_str;
+
5490 if( frame>=0 ) {
+
5491 frame_str = std::to_string(frame);
+
5492 }
+
5493
+
5494 std::ostringstream outfile;
+
5495
+
5496 if( !validateOutputPath(outfile) ){
+
5497 helios_runtime_error("ERROR (RadiationModel::writeCameraImage): Invalid image output directory '" + outfile.str() + "'. Check that the path exists and that you have write permission.");
5498 }
-
5499 context->getGlobalData(global_data_label.c_str(), camera_UUIDs);
-
5500 std::vector<uint> pixel_UUIDs = camera_UUIDs;
-
5501 int2 camera_resolution = cameras.at(cameralabel).resolution;
-
5502
-
5503 std::string frame_str;
-
5504 if( frame>=0 ) {
-
5505 frame_str = std::to_string(frame);
-
5506 }
-
5507
-
5508 std::ostringstream outfile;
-
5509
-
5510 if( image_path.find_last_of('/')==image_path.length()-1 ) {
-
5511 outfile << image_path;
-
5512 }else {
-
5513 outfile << image_path << "/";
-
5514 }
-
5515
-
5516 if( frame>=0 ) {
-
5517 outfile << cameralabel << "_" << imagefile_base << "_" << std::setw(5) << std::setfill('0') << frame_str << ".txt";
-
5518 }else{
-
5519 outfile << cameralabel << "_" << imagefile_base << ".txt";
-
5520 }
-
5521
-
5522 //Output label image in ".txt" format
-
5523 std::ofstream label_file;
-
5524 if( append_label_file ){
-
5525 label_file.open(outfile.str(), std::ios::out | std::ios::app);
-
5526 }else{
-
5527 label_file.open(outfile.str());
-
5528 }
-
5529
-
5530 if( !label_file.is_open() ){
-
5531 helios_runtime_error( "ERROR (RadiationModel::writeImageBoundingBoxes_ObjectData): Could not open file '" + outfile.str() + "'." );
-
5532 }
-
5533
-
5534 std::map<int, vec4> pdata_bounds;
-
5535
-
5536 for (int j = 0; j < camera_resolution.y; j++) {
-
5537 for (int i = 0; i < camera_resolution.x; i++) {
-
5538 uint ii = camera_resolution.x - i -1;
-
5539 uint UUID = pixel_UUIDs.at(j * camera_resolution.x + ii)-1;
-
5540
-
5541 if ( !context->doesPrimitiveExist(UUID) ){
-
5542 continue;
-
5543 }
-
5544
-
5545 uint objID = context->getPrimitiveParentObjectID(UUID);
-
5546
-
5547 if ( !context->doesObjectExist(objID) || !context->doesObjectDataExist(objID,object_data_label.c_str())) {
+
5499
+
5500 if( frame>=0 ) {
+
5501 outfile << cameralabel << "_" << imagefile_base << "_" << std::setw(5) << std::setfill('0') << frame_str << ".txt";
+
5502 }else{
+
5503 outfile << cameralabel << "_" << imagefile_base << ".txt";
+
5504 }
+
5505
+
5506 //Output label image in ".txt" format
+
5507 std::ofstream label_file;
+
5508 if( append_label_file ){
+
5509 label_file.open(outfile.str(), std::ios::out | std::ios::app);
+
5510 }else{
+
5511 label_file.open(outfile.str());
+
5512 }
+
5513
+
5514 if( !label_file.is_open() ){
+
5515 helios_runtime_error( "ERROR (RadiationModel::writeImageBoundingBoxes_ObjectData): Could not open file '" + outfile.str() + "'." );
+
5516 }
+
5517
+
5518 std::map<int, vec4> pdata_bounds;
+
5519
+
5520 for (int j = 0; j < camera_resolution.y; j++) {
+
5521 for (int i = 0; i < camera_resolution.x; i++) {
+
5522 uint ii = camera_resolution.x - i -1;
+
5523 uint UUID = pixel_UUIDs.at(j * camera_resolution.x + ii)-1;
+
5524
+
5525 if ( !context->doesPrimitiveExist(UUID) ){
+
5526 continue;
+
5527 }
+
5528
+
5529 uint objID = context->getPrimitiveParentObjectID(UUID);
+
5530
+
5531 if ( !context->doesObjectExist(objID) || !context->doesObjectDataExist(objID,object_data_label.c_str())) {
+
5532 continue;
+
5533 }
+
5534
+
5535 uint labeldata;
+
5536
+
5537 HeliosDataType datatype = context->getObjectDataType(objID,object_data_label.c_str());
+
5538 if (datatype == HELIOS_TYPE_UINT){
+
5539 uint labeldata_ui;
+
5540 context->getObjectData(objID,object_data_label.c_str(),labeldata_ui);
+
5541 labeldata = labeldata_ui;
+
5542 }
+
5543 else if (datatype == HELIOS_TYPE_INT){
+
5544 int labeldata_i;
+
5545 context->getObjectData(objID,object_data_label.c_str(),labeldata_i);
+
5546 labeldata = (uint)labeldata_i;
+
5547 }else{
5548 continue;
5549 }
5550
-
5551 uint labeldata;
-
5552
-
5553 HeliosDataType datatype = context->getObjectDataType(objID,object_data_label.c_str());
-
5554 if (datatype == HELIOS_TYPE_UINT){
-
5555 uint labeldata_ui;
-
5556 context->getObjectData(objID,object_data_label.c_str(),labeldata_ui);
-
5557 labeldata = labeldata_ui;
-
5558 }
-
5559 else if (datatype == HELIOS_TYPE_INT){
-
5560 int labeldata_i;
-
5561 context->getObjectData(objID,object_data_label.c_str(),labeldata_i);
-
5562 labeldata = (uint)labeldata_i;
-
5563 }else{
-
5564 continue;
-
5565 }
-
5566
-
5567 if( pdata_bounds.find(labeldata) == pdata_bounds.end() ) {
-
5568 pdata_bounds[labeldata] = make_vec4(1e6, -1, 1e6, -1);
-
5569 }
+
5551 if( pdata_bounds.find(labeldata) == pdata_bounds.end() ) {
+
5552 pdata_bounds[labeldata] = make_vec4(1e6, -1, 1e6, -1);
+
5553 }
+
5554
+
5555 if( i<pdata_bounds[labeldata].x ){
+
5556 pdata_bounds[labeldata].x = i;
+
5557 }
+
5558 if( i>pdata_bounds[labeldata].y ){
+
5559 pdata_bounds[labeldata].y = i;
+
5560 }
+
5561 if( j<pdata_bounds[labeldata].z ){
+
5562 pdata_bounds[labeldata].z = j;
+
5563 }
+
5564 if( j>pdata_bounds[labeldata].w ){
+
5565 pdata_bounds[labeldata].w = j;
+
5566 }
+
5567
+
5568 }
+
5569 }
5570
-
5571 if( i<pdata_bounds[labeldata].x ){
-
5572 pdata_bounds[labeldata].x = i;
-
5573 }
-
5574 if( i>pdata_bounds[labeldata].y ){
-
5575 pdata_bounds[labeldata].y = i;
-
5576 }
-
5577 if( j<pdata_bounds[labeldata].z ){
-
5578 pdata_bounds[labeldata].z = j;
-
5579 }
-
5580 if( j>pdata_bounds[labeldata].w ){
-
5581 pdata_bounds[labeldata].w = j;
-
5582 }
+
5571 for( auto box : pdata_bounds ){
+
5572 vec4 bbox = box.second;
+
5573 if( bbox.x==bbox.y || bbox.z==bbox.w ){ //filter boxes of zeros size
+
5574 continue;
+
5575 }
+
5576 label_file << object_class_ID << " " << (bbox.x + 0.5 * (bbox.y - bbox.x)) / float(camera_resolution.x) << " "
+
5577 << (bbox.z + 0.5 * (bbox.w - bbox.z)) / float(camera_resolution.y) << " " << std::setprecision(6)
+
5578 << std::fixed << (bbox.y - bbox.x) / float(camera_resolution.x) << " "
+
5579 << (bbox.w - bbox.z) / float(camera_resolution.y) << std::endl;
+
5580 }
+
5581
+
5582 label_file.close();
5583
-
5584 }
-
5585 }
-
5586
-
5587 for( auto box : pdata_bounds ){
-
5588 vec4 bbox = box.second;
-
5589 if( bbox.x==bbox.y || bbox.z==bbox.w ){ //filter boxes of zeros size
-
5590 continue;
-
5591 }
-
5592 label_file << object_class_ID << " " << (bbox.x + 0.5 * (bbox.y - bbox.x)) / float(camera_resolution.x) << " "
-
5593 << (bbox.z + 0.5 * (bbox.w - bbox.z)) / float(camera_resolution.y) << " " << std::setprecision(6)
-
5594 << std::fixed << (bbox.y - bbox.x) / float(camera_resolution.x) << " "
-
5595 << (bbox.w - bbox.z) / float(camera_resolution.y) << std::endl;
-
5596 }
-
5597
-
5598 label_file.close();
-
5599
-
5600}
+
5584}
-
5601
-
5602
-
-
5603void RadiationModel::setPadValue(const std::string &cameralabel, const std::vector<std::string> &bandlabels, const std::vector<float> &padvalues) {
-
5604 for (uint b = 0; b < bandlabels.size(); b++) {
-
5605 std::string bandlabel = bandlabels.at(b);
-
5606
-
5607 std::string image_value_label = "camera_" + cameralabel + "_" + bandlabel;
-
5608 std::vector<float> cameradata;
-
5609 context->getGlobalData(image_value_label.c_str(), cameradata);
-
5610
-
5611 std::vector<uint> camera_UUIDs;
-
5612 std::string image_UUID_label = "camera_" + cameralabel + "_pixel_UUID";
-
5613 context->getGlobalData(image_UUID_label.c_str(), camera_UUIDs);
-
5614
-
5615 for (uint i = 0; i < cameradata.size(); i++) {
-
5616 uint UUID = camera_UUIDs.at(i)-1;
-
5617 if (!context->doesPrimitiveExist(UUID)) {
-
5618 cameradata.at(i) = padvalues.at(b);
-
5619 }
-
5620 }
-
5621 context->setGlobalData(image_value_label.c_str(), HELIOS_TYPE_FLOAT, cameradata.size(), &cameradata[0]);
-
5622 }
-
5623}
+
5585
+
5586
+
+
5587void RadiationModel::setPadValue(const std::string &cameralabel, const std::vector<std::string> &bandlabels, const std::vector<float> &padvalues) {
+
5588 for (uint b = 0; b < bandlabels.size(); b++) {
+
5589 std::string bandlabel = bandlabels.at(b);
+
5590
+
5591 std::string image_value_label = "camera_" + cameralabel + "_" + bandlabel;
+
5592 std::vector<float> cameradata;
+
5593 context->getGlobalData(image_value_label.c_str(), cameradata);
+
5594
+
5595 std::vector<uint> camera_UUIDs;
+
5596 std::string image_UUID_label = "camera_" + cameralabel + "_pixel_UUID";
+
5597 context->getGlobalData(image_UUID_label.c_str(), camera_UUIDs);
+
5598
+
5599 for (uint i = 0; i < cameradata.size(); i++) {
+
5600 uint UUID = camera_UUIDs.at(i)-1;
+
5601 if (!context->doesPrimitiveExist(UUID)) {
+
5602 cameradata.at(i) = padvalues.at(b);
+
5603 }
+
5604 }
+
5605 context->setGlobalData(image_value_label.c_str(), HELIOS_TYPE_FLOAT, cameradata.size(), &cameradata[0]);
+
5606 }
+
5607}
-
5624
-
-
5625void RadiationModel::calibrateCamera(const std::string &originalcameralabel, const std::vector<std::string> &sourcelabels,
-
5626 const std::vector<std::string>& cameraresplabels_raw, const std::vector<std::string> &bandlabels, const float scalefactor,
-
5627 const std::vector<std::vector<float>> &truevalues, const std::string &calibratedmark) {
+
5608
+
+
5609void RadiationModel::calibrateCamera(const std::string &originalcameralabel, const std::vector<std::string> &sourcelabels,
+
5610 const std::vector<std::string>& cameraresplabels_raw, const std::vector<std::string> &bandlabels, const float scalefactor,
+
5611 const std::vector<std::vector<float>> &truevalues, const std::string &calibratedmark) {
+
5612
+
5613 if( cameras.find(originalcameralabel) == cameras.end() ){
+
5614 helios_runtime_error("ERROR (RadiationModel::calibrateCamera): Camera " + originalcameralabel + " does not exist.");
+
5615 }else if( radiation_sources.empty() ){
+
5616 helios_runtime_error("ERROR (RadiationModel::calibrateCamera): No radiation sources were added to the radiation model. Cannot perform calibration.");
+
5617 }
+
5618
+
5619 CameraCalibration cameracalibration_(context);
+
5620 if (!calibration_flag){
+
5621 std::cout<< "No color board added, use default color calibration." <<std::endl;
+
5622 cameracalibration = &cameracalibration_;
+
5623 vec3 centrelocation =make_vec3(0,0,0.2); // Location of color board
+
5624 vec3 rotationrad =make_vec3(0,0,1.5705); // Rotation angle of color board
+
5625 cameracalibration->addDefaultColorboard(centrelocation, 0.1, rotationrad);
+
5626 }
+
5627 vec2 wavelengthrange = make_vec2(-10000,10000);
5628
-
5629 if( cameras.find(originalcameralabel) == cameras.end() ){
-
5630 helios_runtime_error("ERROR (RadiationModel::calibrateCamera): Camera " + originalcameralabel + " does not exist.");
-
5631 }else if( radiation_sources.empty() ){
-
5632 helios_runtime_error("ERROR (RadiationModel::calibrateCamera): No radiation sources were added to the radiation model. Cannot perform calibration.");
-
5633 }
-
5634
-
5635 CameraCalibration cameracalibration_(context);
-
5636 if (!calibration_flag){
-
5637 std::cout<< "No color board added, use default color calibration." <<std::endl;
-
5638 cameracalibration = &cameracalibration_;
-
5639 vec3 centrelocation =make_vec3(0,0,0.2); // Location of color board
-
5640 vec3 rotationrad =make_vec3(0,0,1.5705); // Rotation angle of color board
-
5641 cameracalibration->addDefaultColorboard(centrelocation, 0.1, rotationrad);
-
5642 }
-
5643 vec2 wavelengthrange = make_vec2(-10000,10000);
-
5644
-
5645 // Calibrated camera response labels
-
5646 std::vector<std::string> cameraresplabels_cal(cameraresplabels_raw.size());
-
5647
-
5648 for (int iband=0;iband<bandlabels.size();iband++){
-
5649 cameraresplabels_cal.at(iband) = calibratedmark + "_" + cameraresplabels_raw.at(iband);
-
5650 }
-
5651
-
5652 RadiationModel::runRadiationImaging(originalcameralabel, sourcelabels, bandlabels, cameraresplabels_raw, wavelengthrange, 1, 0);
-
5653 // Update camera responses
-
5654 RadiationModel::updateCameraResponse(originalcameralabel, sourcelabels, cameraresplabels_raw, wavelengthrange, truevalues, calibratedmark);
-
5655
-
5656 float camerascale = RadiationModel::getCameraResponseScale(originalcameralabel, cameraresplabels_cal, bandlabels,sourcelabels, wavelengthrange, truevalues);
-
5657
-
5658 std::cout << "Camera response scale: " << camerascale << std::endl;
-
5659 // Scale and write calibrated camera responses
-
5660 cameracalibration->writeCalibratedCameraResponses(cameraresplabels_raw, calibratedmark, camerascale*scalefactor);
-
5661
-
5662}
+
5629 // Calibrated camera response labels
+
5630 std::vector<std::string> cameraresplabels_cal(cameraresplabels_raw.size());
+
5631
+
5632 for (int iband=0;iband<bandlabels.size();iband++){
+
5633 cameraresplabels_cal.at(iband) = calibratedmark + "_" + cameraresplabels_raw.at(iband);
+
5634 }
+
5635
+
5636 RadiationModel::runRadiationImaging(originalcameralabel, sourcelabels, bandlabels, cameraresplabels_raw, wavelengthrange, 1, 0);
+
5637 // Update camera responses
+
5638 RadiationModel::updateCameraResponse(originalcameralabel, sourcelabels, cameraresplabels_raw, wavelengthrange, truevalues, calibratedmark);
+
5639
+
5640 float camerascale = RadiationModel::getCameraResponseScale(originalcameralabel, cameraresplabels_cal, bandlabels,sourcelabels, wavelengthrange, truevalues);
+
5641
+
5642 std::cout << "Camera response scale: " << camerascale << std::endl;
+
5643 // Scale and write calibrated camera responses
+
5644 cameracalibration->writeCalibratedCameraResponses(cameraresplabels_raw, calibratedmark, camerascale*scalefactor);
+
5645
+
5646}
-
5663
-
-
5664void RadiationModel::calibrateCamera(const std::string &originalcameralabel, const float scalefactor, const std::vector<std::vector<float>> &truevalues,
-
5665 const std::string &calibratedmark) {
-
5666
-
5667 if( cameras.find(originalcameralabel) == cameras.end() ){
-
5668 helios_runtime_error("ERROR (RadiationModel::calibrateCamera): Camera " + originalcameralabel + " does not exist.");
-
5669 }else if( radiation_sources.empty() ){
-
5670 helios_runtime_error("ERROR (RadiationModel::calibrateCamera): No radiation sources were added to the radiation model. Cannot perform calibration.");
-
5671 }
-
5672
-
5673 CameraCalibration cameracalibration_(context);
-
5674 if (!calibration_flag){
-
5675 std::cout<< "No color board added, use default color calibration." <<std::endl;
-
5676 vec3 centrelocation =make_vec3(0,0,0.2); // Location of color board
-
5677 vec3 rotationrad =make_vec3(0,0,1.5705); // Rotation angle of color board
-
5678 cameracalibration_.addDefaultColorboard(centrelocation, 0.1, rotationrad);
-
5679 RadiationModel::setCameraCalibration(&cameracalibration_);
-
5680 }
-
5681
-
5682 vec2 wavelengthrange = make_vec2(-10000,10000);
-
5683
-
5684 std::vector<std::string> bandlabels = cameras.at(originalcameralabel).band_labels;
-
5685
-
5686 // Get camera response spectra labels from camera
-
5687 std::vector<std::string> cameraresplabels_cal(cameras.at(originalcameralabel).band_spectral_response.size() );
-
5688 std::vector<std::string> cameraresplabels_raw = cameraresplabels_cal;
-
5689
-
5690 int iband = 0;
-
5691 for( auto &band : cameras.at(originalcameralabel).band_spectral_response ){
-
5692 cameraresplabels_raw.at(iband) = band.second;
-
5693 cameraresplabels_cal.at(iband) = calibratedmark + "_" + band.second;
-
5694 iband++;
-
5695 }
+
5647
+
+
5648void RadiationModel::calibrateCamera(const std::string &originalcameralabel, const float scalefactor, const std::vector<std::vector<float>> &truevalues,
+
5649 const std::string &calibratedmark) {
+
5650
+
5651 if( cameras.find(originalcameralabel) == cameras.end() ){
+
5652 helios_runtime_error("ERROR (RadiationModel::calibrateCamera): Camera " + originalcameralabel + " does not exist.");
+
5653 }else if( radiation_sources.empty() ){
+
5654 helios_runtime_error("ERROR (RadiationModel::calibrateCamera): No radiation sources were added to the radiation model. Cannot perform calibration.");
+
5655 }
+
5656
+
5657 CameraCalibration cameracalibration_(context);
+
5658 if (!calibration_flag){
+
5659 std::cout<< "No color board added, use default color calibration." <<std::endl;
+
5660 vec3 centrelocation =make_vec3(0,0,0.2); // Location of color board
+
5661 vec3 rotationrad =make_vec3(0,0,1.5705); // Rotation angle of color board
+
5662 cameracalibration_.addDefaultColorboard(centrelocation, 0.1, rotationrad);
+
5663 RadiationModel::setCameraCalibration(&cameracalibration_);
+
5664 }
+
5665
+
5666 vec2 wavelengthrange = make_vec2(-10000,10000);
+
5667
+
5668 std::vector<std::string> bandlabels = cameras.at(originalcameralabel).band_labels;
+
5669
+
5670 // Get camera response spectra labels from camera
+
5671 std::vector<std::string> cameraresplabels_cal(cameras.at(originalcameralabel).band_spectral_response.size() );
+
5672 std::vector<std::string> cameraresplabels_raw = cameraresplabels_cal;
+
5673
+
5674 int iband = 0;
+
5675 for( auto &band : cameras.at(originalcameralabel).band_spectral_response ){
+
5676 cameraresplabels_raw.at(iband) = band.second;
+
5677 cameraresplabels_cal.at(iband) = calibratedmark + "_" + band.second;
+
5678 iband++;
+
5679 }
+
5680
+
5681 // Get labels of radiation sources from camera
+
5682 std::vector<std::string> sourcelabels(radiation_sources.size());
+
5683 int isource = 0;
+
5684 for( auto &source : radiation_sources ){
+
5685 if( source.source_spectrum.empty() ){
+
5686 helios_runtime_error("ERROR (RadiationModel::calibrateCamera): A spectral distribution was not specified for source " + source.source_spectrum_label + ". Cannot perform camera calibration.");
+
5687 }
+
5688 sourcelabels.at(isource) = source.source_spectrum_label;
+
5689 isource++;
+
5690 }
+
5691
+
5692 RadiationModel::updateGeometry();
+
5693 RadiationModel::runBand(bandlabels);
+
5694 // Update camera responses
+
5695 RadiationModel::updateCameraResponse(originalcameralabel, sourcelabels, cameraresplabels_raw, wavelengthrange, truevalues, calibratedmark);
5696
-
5697 // Get labels of radiation sources from camera
-
5698 std::vector<std::string> sourcelabels(radiation_sources.size());
-
5699 int isource = 0;
-
5700 for( auto &source : radiation_sources ){
-
5701 if( source.source_spectrum.empty() ){
-
5702 helios_runtime_error("ERROR (RadiationModel::calibrateCamera): A spectral distribution was not specified for source " + source.source_spectrum_label + ". Cannot perform camera calibration.");
-
5703 }
-
5704 sourcelabels.at(isource) = source.source_spectrum_label;
-
5705 isource++;
-
5706 }
-
5707
-
5708 RadiationModel::updateGeometry();
-
5709 RadiationModel::runBand(bandlabels);
-
5710 // Update camera responses
-
5711 RadiationModel::updateCameraResponse(originalcameralabel, sourcelabels, cameraresplabels_raw, wavelengthrange, truevalues, calibratedmark);
-
5712
-
5713 float camerascale = RadiationModel::getCameraResponseScale(originalcameralabel, cameraresplabels_cal, bandlabels,sourcelabels, wavelengthrange, truevalues);
-
5714
-
5715 std::cout << "Camera response scale: " << camerascale << std::endl;
-
5716 // Scale and write calibrated camera responses
-
5717 cameracalibration->writeCalibratedCameraResponses(cameraresplabels_raw, calibratedmark, camerascale*scalefactor);
-
5718
-
5719}
+
5697 float camerascale = RadiationModel::getCameraResponseScale(originalcameralabel, cameraresplabels_cal, bandlabels,sourcelabels, wavelengthrange, truevalues);
+
5698
+
5699 std::cout << "Camera response scale: " << camerascale << std::endl;
+
5700 // Scale and write calibrated camera responses
+
5701 cameracalibration->writeCalibratedCameraResponses(cameraresplabels_raw, calibratedmark, camerascale*scalefactor);
+
5702
+
5703}
-
5720
-
5721std::vector<helios::vec2> RadiationModel::generateGaussianCameraResponse(float FWHM, float mu, float centrawavelength, const helios::int2 &wavebanrange){
+
5704
+
5705std::vector<helios::vec2> RadiationModel::generateGaussianCameraResponse(float FWHM, float mu, float centrawavelength, const helios::int2 &wavebanrange){
+
5706
+
5707 // Convert FWHM to sigma
+
5708 float sigma = FWHM / (2 * std::sqrt(2 * std::log(2)));
+
5709
+
5710 size_t lenspectra = wavebanrange.y - wavebanrange.x;
+
5711 std::vector<helios::vec2> cameraresponse(lenspectra);
+
5712
+
5713
+
5714 for (int i = 0; i < lenspectra; ++i) {
+
5715 cameraresponse.at(i).x = float(wavebanrange.x + i);
+
5716 }
+
5717
+
5718 // Gaussian function
+
5719 for (size_t i = 0; i < lenspectra; ++i) {
+
5720 cameraresponse.at(i).y = centrawavelength * std::exp(-std::pow((cameraresponse.at(i).x - mu), 2) / (2 * std::pow(sigma, 2)));
+
5721 }
5722
-
5723 // Convert FWHM to sigma
-
5724 float sigma = FWHM / (2 * std::sqrt(2 * std::log(2)));
-
5725
-
5726 size_t lenspectra = wavebanrange.y - wavebanrange.x;
-
5727 std::vector<helios::vec2> cameraresponse(lenspectra);
+
5723
+
5724 return cameraresponse;
+
5725}
+
5726
+
+
5727bool validateOutputPath(std::ostringstream &output_directory){
5728
-
5729
-
5730 for (int i = 0; i < lenspectra; ++i) {
-
5731 cameraresponse.at(i).x = float(wavebanrange.x + i);
+
5729 // Make sure directory has a trailing slash
+
5730 if( output_directory.str().find_last_of('/')!=output_directory.str().length()-1 ) {
+
5731 output_directory << "/";
5732 }
5733
-
5734 // Gaussian function
-
5735 for (size_t i = 0; i < lenspectra; ++i) {
-
5736 cameraresponse.at(i).y = centrawavelength * std::exp(-std::pow((cameraresponse.at(i).x - mu), 2) / (2 * std::pow(sigma, 2)));
-
5737 }
-
5738
-
5739
-
5740 return cameraresponse;
-
5741}
+
5734 // Create the output directory if it does not exist
+
5735 if( !std::filesystem::exists(output_directory.str()) ){
+
5736 if( !std::filesystem::create_directory(output_directory.str()) ){
+
5737 return false;
+
5738 }
+
5739 }
+
5740
+
5741 return true;
5742
-
5743void sutilHandleError(RTcontext context, RTresult code, const char* file, int line)
-
5744{
-
5745 const char* message;
-
5746 char s[2048];
-
5747 rtContextGetErrorString(context, code, &message);
-
5748 sprintf(s, "%s\n(%s:%d)", message, file, line);
-
5749 sutilReportError( s );
-
5750 exit(1);
-
5751}
-
5752
-
5753void sutilReportError(const char* message)
-
5754{
-
5755 fprintf( stderr, "OptiX Error: %s\n", message );
-
5756#if defined(_WIN32) && defined(RELEASE_PUBLIC)
-
5757 {
-
5758 char s[2048];
-
5759 sprintf( s, "OptiX Error: %s", message );
-
5760 MessageBox( 0, s, "OptiX Error", MB_OK|MB_ICONWARNING|MB_SYSTEMMODAL );
-
5761 }
-
5762#endif
-
5763}
+
5743}
+
+
5744
+
5745void sutilHandleError(RTcontext context, RTresult code, const char* file, int line)
+
5746{
+
5747 const char* message;
+
5748 char s[2048];
+
5749 rtContextGetErrorString(context, code, &message);
+
5750 sprintf(s, "%s\n(%s:%d)", message, file, line);
+
5751 sutilReportError( s );
+
5752 exit(1);
+
5753}
+
5754
+
5755void sutilReportError(const char* message)
+
5756{
+
5757 fprintf( stderr, "OptiX Error: %s\n", message );
+
5758#if defined(_WIN32) && defined(RELEASE_PUBLIC)
+
5759 {
+
5760 char s[2048];
+
5761 sprintf( s, "OptiX Error: %s", message );
+
5762 MessageBox( 0, s, "OptiX Error", MB_OK|MB_ICONWARNING|MB_SYSTEMMODAL );
+
5763 }
+
5764#endif
+
5765}
helios::HeliosDataType
HeliosDataType
Data types.
Definition Context.h:41
helios::HELIOS_TYPE_DOUBLE
@ HELIOS_TYPE_DOUBLE
double data type
Definition Context.h:49
helios::HELIOS_TYPE_VEC2
@ HELIOS_TYPE_VEC2
helios::vec2 data type
Definition Context.h:51
@@ -6060,11 +6064,13 @@
helios::PRIMITIVE_TYPE_VOXEL
@ PRIMITIVE_TYPE_VOXEL
Rectangular prism primitive.
Definition Context.h:37
helios::PRIMITIVE_TYPE_TRIANGLE
@ PRIMITIVE_TYPE_TRIANGLE
< Triangular primitive
Definition Context.h:35
helios::OBJECT_TYPE_TILE
@ OBJECT_TYPE_TILE
< Tile
Definition Context.h:130
+
validateOutputPath
bool validateOutputPath(std::ostringstream &output_directory)
Validates the file path for output file writing by 1) making sure the directory string has a trailing...
Definition RadiationModel.cpp:5727
+
validateOutputPath
bool validateOutputPath(std::ostringstream &output_directory)
Validates the file path for output file writing by 1) making sure the directory string has a trailing...
Definition RadiationModel.cpp:5727
RadiationModel::getCameraOrientation
helios::SphericalCoord getCameraOrientation(const std::string &camera_label) const
Get the orientation of the radiation camera based on a spherical coordinate.
Definition RadiationModel.cpp:1271
RadiationModel::setSourceSpectrumIntegral
void setSourceSpectrumIntegral(uint source_ID, float source_integral)
Set the integral of the source spectral flux distribution across all possible wavelengths (=∫Sdλ)
Definition RadiationModel.cpp:471
RadiationModel::deleteRadiationSource
void deleteRadiationSource(uint sourceID)
Delete an existing radiation source (any type)
Definition RadiationModel.cpp:461
-
RadiationModel::calculateGtheta
float calculateGtheta(helios::Context *context, helios::vec3 view_direction)
Calculate G(theta) (i.e., projected area fraction) for a group of primitives given a certain viewing ...
Definition RadiationModel.cpp:4824
+
RadiationModel::calculateGtheta
float calculateGtheta(helios::Context *context, helios::vec3 view_direction)
Calculate G(theta) (i.e., projected area fraction) for a group of primitives given a certain viewing ...
Definition RadiationModel.cpp:4820
RadiationModel::disableMessages
void disableMessages()
Disable/silence status messages.
Definition RadiationModel.cpp:54
RadiationModel::setCameraSpectralResponse
void setCameraSpectralResponse(const std::string &camera_label, const std::string &band_label, const std::string &global_data)
Set the spectral response of a camera band based on reference to global data. This function version u...
Definition RadiationModel.cpp:1199
RadiationModel::setSourceFlux
void setSourceFlux(uint source_ID, const std::string &band_label, float flux)
Set the flux of radiation source for this band.
Definition RadiationModel.cpp:508
@@ -6078,36 +6084,36 @@
RadiationModel::integrateSpectrum
float integrateSpectrum(const std::vector< helios::vec2 > &object_spectrum, float wavelength1, float wavelength2) const
Integrate a spectral distribution between two wavelength bounds.
Definition RadiationModel.cpp:835
RadiationModel::setDirectRayCount
void setDirectRayCount(const std::string &label, size_t N)
Sets variable directRayCount, the number of rays to be used in direct radiation model.
Definition RadiationModel.cpp:72
RadiationModel::copyRadiationBand
void copyRadiationBand(const std::string &old_label, const std::string &new_label)
Copy a spectral radiation band based on a previously created band.
Definition RadiationModel.cpp:230
-
RadiationModel::writeCameraImageData
void writeCameraImageData(const std::string &camera, const std::string &band, const std::string &imagefile_base, const std::string &image_path="./", int frame=-1)
Write camera data for one band to an ASCII text file.
Definition RadiationModel.cpp:1422
-
RadiationModel::writeImageBoundingBoxes
void writeImageBoundingBoxes(const std::string &cameralabel, const std::string &primitive_data_label, uint object_class_ID, const std::string &imagefile_base, const std::string &image_path="./", bool append_label_file=false, int frame=-1)
Write bounding boxes based on primitive data labels (Ultralytic's YOLO format). Primitive data must h...
Definition RadiationModel.cpp:5380
+
RadiationModel::writeCameraImageData
void writeCameraImageData(const std::string &camera, const std::string &band, const std::string &imagefile_base, const std::string &image_path="./", int frame=-1)
Write camera data for one band to an ASCII text file.
Definition RadiationModel.cpp:1420
+
RadiationModel::writeImageBoundingBoxes
void writeImageBoundingBoxes(const std::string &cameralabel, const std::string &primitive_data_label, uint object_class_ID, const std::string &imagefile_base, const std::string &image_path="./", bool append_label_file=false, int frame=-1)
Write bounding boxes based on primitive data labels (Ultralytic's YOLO format). Primitive data must h...
Definition RadiationModel.cpp:5368
RadiationModel::enableLightModelVisualization
void enableLightModelVisualization()
Add a 3D model of the light source (rectangular, disk, and sphere) to the Context for visualization p...
Definition RadiationModel.cpp:665
-
RadiationModel::getTotalAbsorbedFlux
std::vector< float > getTotalAbsorbedFlux()
Get the total absorbed radiation flux summed over all bands for each primitive.
Definition RadiationModel.cpp:3725
-
RadiationModel::writeNormCameraImage
void writeNormCameraImage(const std::string &camera, const std::vector< std::string > &bands, const std::string &imagefile_base, const std::string &image_path="./", int frame=-1)
Write normalized camera data (maximum value is 1) for one or more bands to a JPEG image.
Definition RadiationModel.cpp:1388
-
RadiationModel::writeNormDepthImage
void writeNormDepthImage(const std::string &cameralabel, const std::string &imagefile_base, float max_depth, const std::string &image_path="./", int frame=-1)
Write depth image file, with grayscale normalized to the minimum and maximum depth values.
Definition RadiationModel.cpp:5311
+
RadiationModel::getTotalAbsorbedFlux
std::vector< float > getTotalAbsorbedFlux()
Get the total absorbed radiation flux summed over all bands for each primitive.
Definition RadiationModel.cpp:3721
+
RadiationModel::writeNormCameraImage
void writeNormCameraImage(const std::string &camera, const std::vector< std::string > &bands, const std::string &imagefile_base, const std::string &image_path="./", int frame=-1)
Write normalized camera data (maximum value is 1) for one or more bands to a JPEG image.
Definition RadiationModel.cpp:1386
+
RadiationModel::writeNormDepthImage
void writeNormDepthImage(const std::string &cameralabel, const std::string &imagefile_base, float max_depth, const std::string &image_path="./", int frame=-1)
Write depth image file, with grayscale normalized to the minimum and maximum depth values.
Definition RadiationModel.cpp:5301
RadiationModel::getCameraPosition
helios::vec3 getCameraPosition(const std::string &camera_label) const
Get the position of the radiation camera.
Definition RadiationModel.cpp:1225
RadiationModel::setMinScatterEnergy
void setMinScatterEnergy(const std::string &label, uint energy)
Set the energy threshold used to terminate scattering iterations. Scattering iterations are terminate...
Definition RadiationModel.cpp:1130
RadiationModel::getCameraLookat
helios::vec3 getCameraLookat(const std::string &camera_label) const
Get the position the radiation camera is pointed toward (used to calculate camera orientation)
Definition RadiationModel.cpp:1248
RadiationModel::disableCameraModelVisualization
void disableCameraModelVisualization()
Remove the 3D model of the camera from the Context.
Definition RadiationModel.cpp:692
RadiationModel::setDiffuseSpectrumIntegral
void setDiffuseSpectrumIntegral(float spectrum_integral)
Set the integral of the diffuse spectral flux distribution across all possible wavelengths FOR ALL EX...
Definition RadiationModel.cpp:132
RadiationModel::setScatteringDepth
void setScatteringDepth(const std::string &label, uint depth)
Set the number of scattering iterations for a certain band.
Definition RadiationModel.cpp:1121
-
RadiationModel::runRadiationImaging
void runRadiationImaging(const std::string &cameralabel, const std::vector< std::string > &sourcelabels, const std::vector< std::string > &bandlabels, const std::vector< std::string > &cameraresponselabels, helios::vec2 wavelengthrange, float fluxscale=1, float diffusefactor=0.0005, uint scatteringdepth=4)
Run radiation imaging simulation.
Definition RadiationModel.cpp:4970
-
RadiationModel::setPadValue
void setPadValue(const std::string &cameralabel, const std::vector< std::string > &bandlabels, const std::vector< float > &padvalues)
Set padding value for pixels do not have valid values.
Definition RadiationModel.cpp:5603
+
RadiationModel::runRadiationImaging
void runRadiationImaging(const std::string &cameralabel, const std::vector< std::string > &sourcelabels, const std::vector< std::string > &bandlabels, const std::vector< std::string > &cameraresponselabels, helios::vec2 wavelengthrange, float fluxscale=1, float diffusefactor=0.0005, uint scatteringdepth=4)
Run radiation imaging simulation.
Definition RadiationModel.cpp:4966
+
RadiationModel::setPadValue
void setPadValue(const std::string &cameralabel, const std::vector< std::string > &bandlabels, const std::vector< float > &padvalues)
Set padding value for pixels do not have valid values.
Definition RadiationModel.cpp:5587
RadiationModel::disableEmission
void disableEmission(const std::string &label)
Disable emission calculations for all primitives in this band.
Definition RadiationModel.cpp:268
-
RadiationModel::writePrimitiveDataLabelMap
void writePrimitiveDataLabelMap(const std::string &cameralabel, const std::string &primitive_data_label, const std::string &imagefile_base, const std::string &image_path="./", int frame=-1, float padvalue=NAN)
Write image pixel labels to text file based on primitive data. Primitive data must have type 'float',...
Definition RadiationModel.cpp:5078
+
RadiationModel::writePrimitiveDataLabelMap
void writePrimitiveDataLabelMap(const std::string &cameralabel, const std::string &primitive_data_label, const std::string &imagefile_base, const std::string &image_path="./", int frame=-1, float padvalue=NAN)
Write image pixel labels to text file based on primitive data. Primitive data must have type 'float',...
Definition RadiationModel.cpp:5074
RadiationModel::setSourceSpectrum
void setSourceSpectrum(uint source_ID, const std::vector< helios::vec2 > &spectrum)
Set the spectral distribution of a radiation source according to a vector of wavelength-intensity pai...
Definition RadiationModel.cpp:556
RadiationModel::enableEmission
void enableEmission(const std::string &label)
Enable emission calculations for all primitives in this band.
Definition RadiationModel.cpp:278
-
RadiationModel::runBand
void runBand(const std::string &label)
Run the simulation for a single radiative band.
Definition RadiationModel.cpp:3102
+
RadiationModel::runBand
void runBand(const std::string &label)
Run the simulation for a single radiative band.
Definition RadiationModel.cpp:3098
RadiationModel::setCameraLookat
void setCameraLookat(const std::string &camera_label, const helios::vec3 &lookat)
Set the position the radiation camera is pointed toward (used to calculate camera orientation)
Definition RadiationModel.cpp:1235
RadiationModel::addSunSphereRadiationSource
uint addSunSphereRadiationSource()
Add a sphere radiation source that models the sun assuming the default direction of (0,...
Definition RadiationModel.cpp:362
RadiationModel::addDiskRadiationSource
uint addDiskRadiationSource(const helios::vec3 &position, float radius, const helios::vec3 &rotation)
Add planar circular radiation source.
Definition RadiationModel.cpp:430
RadiationModel::doesBandExist
bool doesBandExist(const std::string &label) const
Check if a radiation band exists based on its label.
Definition RadiationModel.cpp:260
-
RadiationModel::getSkyEnergy
float getSkyEnergy()
Get the radiative energy lost to the sky (surroundings)
Definition RadiationModel.cpp:3713
+
RadiationModel::getSkyEnergy
float getSkyEnergy()
Get the radiative energy lost to the sky (surroundings)
Definition RadiationModel.cpp:3709
RadiationModel::getSourceFlux
float getSourceFlux(uint source_ID, const std::string &band_label) const
Get the flux of radiation source for this band.
Definition RadiationModel.cpp:530
RadiationModel::setCameraPosition
void setCameraPosition(const std::string &camera_label, const helios::vec3 &position)
Set the position of the radiation camera.
Definition RadiationModel.cpp:1210
RadiationModel::setSourcePosition
void setSourcePosition(uint source_ID, const helios::vec3 &position)
Set the position/direction of radiation source based on a Cartesian vector.
Definition RadiationModel.cpp:1090
RadiationModel::writeCameraImage
void writeCameraImage(const std::string &camera, const std::vector< std::string > &bands, const std::string &imagefile_base, const std::string &image_path="./", int frame=-1, float flux_to_pixel_conversion=1.f)
Write camera data for one or more bands to a JPEG image.
Definition RadiationModel.cpp:1304
RadiationModel::setDiffuseRadiationFlux
void setDiffuseRadiationFlux(const std::string &label, float flux)
Diffuse (ambient) radiation flux.
Definition RadiationModel.cpp:86
-
RadiationModel::calibrateCamera
void calibrateCamera(const std::string &orginalcameralabel, const std::vector< std::string > &sourcelabels, const std::vector< std::string > &cameraresponselabels, const std::vector< std::string > &bandlabels, const float scalefactor, const std::vector< std::vector< float > > &truevalues, const std::string &calibratedmark)
Calibrate camera.
Definition RadiationModel.cpp:5625
+
RadiationModel::calibrateCamera
void calibrateCamera(const std::string &orginalcameralabel, const std::vector< std::string > &sourcelabels, const std::vector< std::string > &cameraresponselabels, const std::vector< std::string > &bandlabels, const float scalefactor, const std::vector< std::vector< float > > &truevalues, const std::string &calibratedmark)
Calibrate camera.
Definition RadiationModel.cpp:5609
RadiationModel::setDiffuseRayCount
void setDiffuseRayCount(const std::string &label, size_t N)
Sets variable diffuseRayCount, the number of rays to be used in diffuse (ambient) radiation model.
Definition RadiationModel.cpp:79
RadiationModel::getSourcePosition
helios::vec3 getSourcePosition(uint source_ID) const
Get the position/direction of radiation source.
Definition RadiationModel.cpp:1114
RadiationModel::addRectangleRadiationSource
uint addRectangleRadiationSource(const helios::vec3 &position, const helios::vec2 &size, const helios::vec3 &rotation)
Add planar rectangular radiation source.
Definition RadiationModel.cpp:400
@@ -6115,80 +6121,80 @@
RadiationModel::disableLightModelVisualization
void disableLightModelVisualization()
Remove the 3D model of the light source from the Context.
Definition RadiationModel.cpp:675
RadiationModel::scaleSpectrumRandomly
void scaleSpectrumRandomly(const std::string &existing_global_data_label, const std::string &new_global_data_label, float minimum_scale_factor, float maximum_scale_factor) const
Scale an entire spectrum by a random factor following a uniform distribution.
Definition RadiationModel.cpp:988
RadiationModel::optionalOutputPrimitiveData
void optionalOutputPrimitiveData(const char *label)
Add optional output primitive data values to the Context.
Definition RadiationModel.cpp:62
-
RadiationModel::writeImageBoundingBoxes_ObjectData
void writeImageBoundingBoxes_ObjectData(const std::string &cameralabel, const std::string &object_data_label, uint object_class_ID, const std::string &imagefile_base, const std::string &image_path="./", bool append_label_file=false, int frame=-1)
Write bounding boxes based on object data labels (Ultralytic's YOLO format). Object data must have ty...
Definition RadiationModel.cpp:5487
+
RadiationModel::writeImageBoundingBoxes_ObjectData
void writeImageBoundingBoxes_ObjectData(const std::string &cameralabel, const std::string &object_data_label, uint object_class_ID, const std::string &imagefile_base, const std::string &image_path="./", bool append_label_file=false, int frame=-1)
Write bounding boxes based on object data labels (Ultralytic's YOLO format). Object data must have ty...
Definition RadiationModel.cpp:5473
RadiationModel::setDiffuseRadiationExtinctionCoeff
void setDiffuseRadiationExtinctionCoeff(const std::string &label, float K, const helios::vec3 &peak_dir)
Extinction coefficient of diffuse ambient radiation.
Definition RadiationModel.cpp:97
-
RadiationModel::updateGeometry
void updateGeometry()
Adds all geometric primitives from the Context to OptiX.
Definition RadiationModel.cpp:1970
+
RadiationModel::updateGeometry
void updateGeometry()
Adds all geometric primitives from the Context to OptiX.
Definition RadiationModel.cpp:1966
RadiationModel::RadiationModel
RadiationModel(helios::Context *context)
Default constructor.
Definition RadiationModel.cpp:20
RadiationModel::addRadiationBand
void addRadiationBand(const std::string &label)
Add a spectral radiation band to the model.
Definition RadiationModel.cpp:183
RadiationModel::enableCameraModelVisualization
void enableCameraModelVisualization()
Add a 3D model of the camera to the Context for visualization purposes.
Definition RadiationModel.cpp:682
-
RadiationModel::writeDepthImageData
void writeDepthImageData(const std::string &cameralabel, const std::string &imagefile_base, const std::string &image_path="./", int frame=-1)
Write depth image data to text file.
Definition RadiationModel.cpp:5257
-
RadiationModel::getCameraResponseScale
float getCameraResponseScale(const std::string &orginalcameralabel, const std::vector< std::string > &cameraresponselabels, const std::vector< std::string > &bandlabels, const std::vector< std::string > &sourcelabels, helios::vec2 &wavelengthrange, const std::vector< std::vector< float > > &truevalues)
Get the scale factor of the camera response for a given camera.
Definition RadiationModel.cpp:5055
+
RadiationModel::writeDepthImageData
void writeDepthImageData(const std::string &cameralabel, const std::string &imagefile_base, const std::string &image_path="./", int frame=-1)
Write depth image data to text file.
Definition RadiationModel.cpp:5249
+
RadiationModel::getCameraResponseScale
float getCameraResponseScale(const std::string &orginalcameralabel, const std::vector< std::string > &cameraresponselabels, const std::vector< std::string > &bandlabels, const std::vector< std::string > &sourcelabels, helios::vec2 &wavelengthrange, const std::vector< std::vector< float > > &truevalues)
Get the scale factor of the camera response for a given camera.
Definition RadiationModel.cpp:5051
RadiationModel::addCollimatedRadiationSource
uint addCollimatedRadiationSource()
Add an external source of collimated radiation (i.e., source at infinite distance with parallel rays)...
Definition RadiationModel.cpp:288
RadiationModel::~RadiationModel
~RadiationModel()
Destructor.
Definition RadiationModel.cpp:50
RadiationModel::addRadiationCamera
void addRadiationCamera(const std::string &camera_label, const std::vector< std::string > &band_label, const helios::vec3 &position, const helios::vec3 &lookat, const CameraProperties &camera_properties, uint antialiasing_samples)
Add a radiation camera sensor.
Definition RadiationModel.cpp:1162
RadiationModel::setDiffuseSpectrum
void setDiffuseSpectrum(const std::string &spectrum_label)
Set the spectral distribution of diffuse ambient radiation FOR ALL BANDS based on global data of wave...
Definition RadiationModel.cpp:607
RadiationModel::getDiffuseFlux
float getDiffuseFlux(const std::string &band_label) const
Get the diffuse flux for a given band.
Definition RadiationModel.cpp:643
-
RadiationModel::updateCameraResponse
void updateCameraResponse(const std::string &orginalcameralabel, const std::vector< std::string > &sourcelabels_raw, const std::vector< std::string > &cameraresponselabels, helios::vec2 &wavelengthrange, const std::vector< std::vector< float > > &truevalues, const std::string &calibratedmark)
Update the camera response for a given camera based on color board.
Definition RadiationModel.cpp:4853
+
RadiationModel::updateCameraResponse
void updateCameraResponse(const std::string &orginalcameralabel, const std::vector< std::string > &sourcelabels_raw, const std::vector< std::string > &cameraresponselabels, helios::vec2 &wavelengthrange, const std::vector< std::vector< float > > &truevalues, const std::string &calibratedmark)
Update the camera response for a given camera based on color board.
Definition RadiationModel.cpp:4849
RadiationModel::integrateSourceSpectrum
float integrateSourceSpectrum(uint source_ID, float wavelength1, float wavelength2) const
Integrate a source spectral distribution between two wavelength bounds.
Definition RadiationModel.cpp:952
-
RadiationModel::writeObjectDataLabelMap
void writeObjectDataLabelMap(const std::string &cameralabel, const std::string &object_data_label, const std::string &imagefile_base, const std::string &image_path="./", int frame=-1, float padvalue=NAN)
Write image pixel labels to text file based on object data. Object data must have type 'float',...
Definition RadiationModel.cpp:5167
-
helios::CompoundObject::getObjectType
helios::ObjectType getObjectType() const
Get an enumeration specifying the type of the object.
Definition Context.cpp:2232
-
helios::CompoundObject::getTransformationMatrix
void getTransformationMatrix(float(&T)[16]) const
Method to return the Affine transformation matrix of a Compound Object.
Definition Context.cpp:2488
+
RadiationModel::writeObjectDataLabelMap
void writeObjectDataLabelMap(const std::string &cameralabel, const std::string &object_data_label, const std::string &imagefile_base, const std::string &image_path="./", int frame=-1, float padvalue=NAN)
Write image pixel labels to text file based on object data. Object data must have type 'float',...
Definition RadiationModel.cpp:5161
+
helios::CompoundObject::getObjectType
helios::ObjectType getObjectType() const
Get an enumeration specifying the type of the object.
Definition Context.cpp:2227
+
helios::CompoundObject::getTransformationMatrix
void getTransformationMatrix(float(&T)[16]) const
Method to return the Affine transformation matrix of a Compound Object.
Definition Context.cpp:2483
helios::Context
Stores the state associated with simulation.
Definition Context.h:1882
-
helios::Context::getPrimitiveTransformationMatrix
void getPrimitiveTransformationMatrix(uint UUID, float(&T)[16]) const
Method to return the Affine transformation matrix of a Primitive.
Definition Context.cpp:6985
+
helios::Context::getPrimitiveTransformationMatrix
void getPrimitiveTransformationMatrix(uint UUID, float(&T)[16]) const
Method to return the Affine transformation matrix of a Primitive.
Definition Context.cpp:7052
helios::Context::loadXML
std::vector< uint > loadXML(const char *filename, bool quiet=false)
Load inputs specified in an XML file.
Definition Context_fileIO.cpp:1217
-
helios::Context::translatePrimitive
void translatePrimitive(uint UUID, const vec3 &shift)
Translate a primitive using its UUID.
Definition Context.cpp:1401
-
helios::Context::getPrimitiveArea
float getPrimitiveArea(uint UUID) const
Method to return the surface area of a Primitive.
Definition Context.cpp:6930
+
helios::Context::translatePrimitive
void translatePrimitive(uint UUID, const vec3 &shift)
Translate a primitive using its UUID.
Definition Context.cpp:1396
+
helios::Context::getPrimitiveArea
float getPrimitiveArea(uint UUID) const
Method to return the surface area of a Primitive.
Definition Context.cpp:6997
helios::Context::getPrimitiveData
void getPrimitiveData(uint UUID, const char *label, int &data) const
Get data associated with a primitive element.
Definition Context_data.cpp:1001
-
helios::Context::deletePrimitive
void deletePrimitive(uint UUID)
Delete a single primitive from the context.
Definition Context.cpp:1531
+
helios::Context::deletePrimitive
void deletePrimitive(uint UUID)
Delete a single primitive from the context.
Definition Context.cpp:1526
helios::Context::doesObjectDataExist
bool doesObjectDataExist(uint objID, const char *label) const
Check if primitive data 'label' exists.
Definition Context_data.cpp:2908
-
helios::Context::getPrimitiveParentObjectID
uint getPrimitiveParentObjectID(uint UUID) const
Method to return the ID of the parent object the primitive belongs to (default is object 0)
Definition Context.cpp:6894
-
helios::Context::getAllObjectIDs
std::vector< uint > getAllObjectIDs() const
Get the IDs for all Compound Objects in the Context.
Definition Context.cpp:2574
+
helios::Context::getPrimitiveParentObjectID
uint getPrimitiveParentObjectID(uint UUID) const
Method to return the ID of the parent object the primitive belongs to (default is object 0)
Definition Context.cpp:6961
+
helios::Context::getAllObjectIDs
std::vector< uint > getAllObjectIDs() const
Get the IDs for all Compound Objects in the Context.
Definition Context.cpp:2569
helios::Context::getObjectData
void getObjectData(uint objID, const char *label, int &data) const
Get data associated with a compound object.
Definition Context_data.cpp:2740
-
helios::Context::getDomainBoundingSphere
void getDomainBoundingSphere(helios::vec3 &center, float &radius) const
Get the center and radius of a sphere that bounds all primitives in the domain.
Definition Context.cpp:2101
-
helios::Context::getObjectPointer
CompoundObject * getObjectPointer(uint ObjID) const
Get a pointer to a Compound Object.
Definition Context.cpp:2559
-
helios::Context::randu
float randu()
Draw a random number from a uniform distribution between 0 and 1.
Definition Context.cpp:1173
-
helios::Context::getPrimitiveTextureFile
std::string getPrimitiveTextureFile(uint UUID) const
Get the path to texture map file for primitive. If primitive does not have a texture map,...
Definition Context.cpp:7036
-
helios::Context::getPrimitiveTextureUV
std::vector< vec2 > getPrimitiveTextureUV(uint UUID) const
Get u-v texture coordinates at primitive vertices.
Definition Context.cpp:7052
-
helios::Context::primitiveTextureHasTransparencyChannel
bool primitiveTextureHasTransparencyChannel(uint UUID) const
Check if primitive texture map has a transparency channel.
Definition Context.cpp:7056
-
helios::Context::rotatePrimitive
void rotatePrimitive(uint UUID, float rot, const char *axis)
Rotate a primitive about the x, y, or z axis using its UUID.
Definition Context.cpp:1415
-
helios::Context::doesGlobalDataExist
bool doesGlobalDataExist(const char *label) const
Check if global data 'label' exists.
Definition Context_data.cpp:4447
-
helios::Context::getPrimitiveType
PrimitiveType getPrimitiveType(uint UUID) const
Method to get the Primitive type.
Definition Context.cpp:6861
-
helios::Context::getVoxelSize
helios::vec3 getVoxelSize(uint UUID) const
Get the size of a voxel element.
Definition Context.cpp:1736
+
helios::Context::getDomainBoundingSphere
void getDomainBoundingSphere(helios::vec3 &center, float &radius) const
Get the center and radius of a sphere that bounds all primitives in the domain.
Definition Context.cpp:2096
+
helios::Context::getObjectPointer
CompoundObject * getObjectPointer(uint ObjID) const
Get a pointer to a Compound Object.
Definition Context.cpp:2554
+
helios::Context::randu
float randu()
Draw a random number from a uniform distribution between 0 and 1.
Definition Context.cpp:1168
+
helios::Context::getPrimitiveTextureFile
std::string getPrimitiveTextureFile(uint UUID) const
Get the path to texture map file for primitive. If primitive does not have a texture map,...
Definition Context.cpp:7103
+
helios::Context::getPrimitiveTextureUV
std::vector< vec2 > getPrimitiveTextureUV(uint UUID) const
Get u-v texture coordinates at primitive vertices.
Definition Context.cpp:7119
+
helios::Context::primitiveTextureHasTransparencyChannel
bool primitiveTextureHasTransparencyChannel(uint UUID) const
Check if primitive texture map has a transparency channel.
Definition Context.cpp:7123
+
helios::Context::rotatePrimitive
void rotatePrimitive(uint UUID, float rot, const char *axis)
Rotate a primitive about the x, y, or z axis using its UUID.
Definition Context.cpp:1410
+
helios::Context::doesGlobalDataExist
bool doesGlobalDataExist(const char *label) const
Check if global data 'label' exists.
Definition Context_data.cpp:4458
+
helios::Context::getPrimitiveType
PrimitiveType getPrimitiveType(uint UUID) const
Method to get the Primitive type.
Definition Context.cpp:6928
+
helios::Context::getVoxelSize
helios::vec3 getVoxelSize(uint UUID) const
Get the size of a voxel element.
Definition Context.cpp:1731
helios::Context::doesPrimitiveDataExist
bool doesPrimitiveDataExist(uint UUID, const char *label) const
Check if primitive data 'label' exists.
Definition Context_data.cpp:1169
helios::Context::loadOBJ
std::vector< uint > loadOBJ(const char *filename, bool silent=false)
Load geometry contained in a Wavefront OBJ file (.obj). Model will be placed at the origin without an...
Definition Context_fileIO.cpp:3734
-
helios::Context::getDomainBoundingBox
void getDomainBoundingBox(helios::vec2 &xbounds, helios::vec2 &ybounds, helios::vec2 &zbounds) const
Get a box that bounds all primitives in the domain.
Definition Context.cpp:2031
+
helios::Context::getDomainBoundingBox
void getDomainBoundingBox(helios::vec2 &xbounds, helios::vec2 &ybounds, helios::vec2 &zbounds) const
Get a box that bounds all primitives in the domain.
Definition Context.cpp:2026
helios::Context::getGlobalDataType
HeliosDataType getGlobalDataType(const char *label) const
Get the Helios data type of global data.
Definition Context_data.cpp:4427
helios::Context::getGlobalData
void getGlobalData(const char *label, int &data) const
Get global data value (scalar integer)
Definition Context_data.cpp:4053
-
helios::Context::getAllUUIDs
std::vector< uint > getAllUUIDs() const
Get all primitive UUIDs currently in the Context.
Definition Context.cpp:1758
-
helios::Context::getPrimitiveTextureTransparencyData
const std::vector< std::vector< bool > > * getPrimitiveTextureTransparencyData(uint UUID) const
Get the transparency channel pixel data from primitive texture map. If transparency channel does not ...
Definition Context.cpp:7064
-
helios::Context::doesObjectExist
bool doesObjectExist(uint ObjID) const
Check whether Compound Object exists in the Context.
Definition Context.cpp:2570
+
helios::Context::getAllUUIDs
std::vector< uint > getAllUUIDs() const
Get all primitive UUIDs currently in the Context.
Definition Context.cpp:1753
+
helios::Context::getPrimitiveTextureTransparencyData
const std::vector< std::vector< bool > > * getPrimitiveTextureTransparencyData(uint UUID) const
Get the transparency channel pixel data from primitive texture map. If transparency channel does not ...
Definition Context.cpp:7131
+
helios::Context::doesObjectExist
bool doesObjectExist(uint ObjID) const
Check whether Compound Object exists in the Context.
Definition Context.cpp:2565
helios::Context::getPrimitiveDataType
HeliosDataType getPrimitiveDataType(uint UUID, const char *label) const
Get the Helios data type of primitive data.
Definition Context_data.cpp:1155
helios::Context::setGlobalData
void setGlobalData(const char *label, const int &data)
Add global data value (int)
Definition Context_data.cpp:3769
-
helios::Context::scalePrimitive
void scalePrimitive(uint UUID, const helios::vec3 &S)
Scale a primitive using its UUID relative to the origin (0,0,0)
Definition Context.cpp:1486
-
helios::Context::getPrimitiveNormal
helios::vec3 getPrimitiveNormal(uint UUID) const
Method to return the normal vector of a Primitive.
Definition Context.cpp:6981
+
helios::Context::scalePrimitive
void scalePrimitive(uint UUID, const helios::vec3 &S)
Scale a primitive using its UUID relative to the origin (0,0,0)
Definition Context.cpp:1481
+
helios::Context::getPrimitiveNormal
helios::vec3 getPrimitiveNormal(uint UUID) const
Method to return the normal vector of a Primitive.
Definition Context.cpp:7048
helios::Context::setPrimitiveData
void setPrimitiveData(const uint &UUID, const char *label, const int &data)
Add data value (int) associated with a primitive element.
Definition Context_data.cpp:655
-
helios::Context::getVoxelCenter
helios::vec3 getVoxelCenter(uint UUID) const
Get the Cartesian (x,y,z) center position of a voxel element.
Definition Context.cpp:1745
-
helios::Context::doesPrimitiveExist
bool doesPrimitiveExist(uint UUID) const
Check if primitive exists for a given UUID.
Definition Context.cpp:1654
-
helios::Context::getTileObjectPointer
Tile * getTileObjectPointer(uint ObjID) const
Get a pointer to a Tile Compound Object.
Definition Context.cpp:3297
+
helios::Context::getVoxelCenter
helios::vec3 getVoxelCenter(uint UUID) const
Get the Cartesian (x,y,z) center position of a voxel element.
Definition Context.cpp:1740
+
helios::Context::doesPrimitiveExist
bool doesPrimitiveExist(uint UUID) const
Check if primitive exists for a given UUID.
Definition Context.cpp:1649
+
helios::Context::getTileObjectPointer
Tile * getTileObjectPointer(uint ObjID) const
Get a pointer to a Tile Compound Object.
Definition Context.cpp:3292
helios::Context::scanXMLForTag
static bool scanXMLForTag(const std::string &filename, const std::string &tag, const std::string &label="")
Scan a Helios XML file to check if a tag exists.
Definition Context_fileIO.cpp:2403
-
helios::Context::getPrimitiveVertices
std::vector< helios::vec3 > getPrimitiveVertices(uint UUID) const
Method to return the (x,y,z) coordinates of the vertices of a Primitive.
Definition Context.cpp:6999
+
helios::Context::getPrimitiveVertices
std::vector< helios::vec3 > getPrimitiveVertices(uint UUID) const
Method to return the (x,y,z) coordinates of the vertices of a Primitive.
Definition Context.cpp:7066
helios::Context::getObjectDataType
HeliosDataType getObjectDataType(uint objID, const char *label) const
Get the Helios data type of primitive data.
Definition Context_data.cpp:2894
-
helios::Tile::getSubdivisionCount
helios::int2 getSubdivisionCount() const
Get the number of sub-patch divisions of the tile.
Definition Context.cpp:3328
-
helios::Tile::getVertices
std::vector< helios::vec3 > getVertices() const
Get the Cartesian coordinates of each of the four corners of the tile object.
Definition Context.cpp:3337
-
helios::interp1
float interp1(const std::vector< helios::vec2 > &points, float x)
Function to perform linear interpolation based on a vector of discrete (x,y) values.
Definition global.cpp:2938
+
helios::Tile::getSubdivisionCount
helios::int2 getSubdivisionCount() const
Get the number of sub-patch divisions of the tile.
Definition Context.cpp:3323
+
helios::Tile::getVertices
std::vector< helios::vec3 > getVertices() const
Get the Cartesian coordinates of each of the four corners of the tile object.
Definition Context.cpp:3332
+
helios::interp1
float interp1(const std::vector< helios::vec2 > &points, float x)
Function to perform linear interpolation based on a vector of discrete (x,y) values.
Definition global.cpp:2940
helios::helios_runtime_error
void helios_runtime_error(const std::string &error_message)
Function to throw a runtime error.
Definition global.cpp:29
-
helios::writeJPEG
void writeJPEG(const std::string &filename, uint width, uint height, const std::vector< helios::RGBcolor > &pixel_data)
Function to write a JPEG image based on pixel data.
Definition global.cpp:1784
-
helios::flatten
std::vector< int > flatten(const std::vector< std::vector< int > > &vec)
Function to flatten a 2D int vector into a 1D vector.
Definition global.cpp:1859
+
helios::writeJPEG
void writeJPEG(const std::string &filename, uint width, uint height, const std::vector< helios::RGBcolor > &pixel_data)
Function to write a JPEG image based on pixel data.
Definition global.cpp:1786
+
helios::flatten
std::vector< int > flatten(const std::vector< std::vector< int > > &vec)
Function to flatten a 2D int vector into a 1D vector.
Definition global.cpp:1861
helios::cart2sphere
SphericalCoord cart2sphere(const vec3 &Cartesian)
Convert Cartesian coordinates to spherical coordinates.
Definition global.cpp:610
helios::sphere2cart
vec3 sphere2cart(const SphericalCoord &Spherical)
Convert Spherical coordinates to Cartesian coordinates.
Definition global.cpp:617
helios::acos_safe
float acos_safe(float x)
arccosine function to handle cases when round-off errors cause an argument <-1 or >1,...
Definition global.cpp:241
helios::sum
float sum(const std::vector< float > &vect)
Sum of a vector of floats.
Definition global.cpp:987
-
helios::Context::getPrimitiveCount
uint getPrimitiveCount() const
Get the total number of Primitives in the Context.
Definition Context.cpp:1754
-
helios::make_vec2
vec2 make_vec2(float x, float y)
Make a vec2 from two floats.
Definition helios_vector_types.h:432
-
helios::make_RGBcolor
RGBcolor make_RGBcolor(float r, float g, float b)
Make an RGBcolor vector.
Definition helios_vector_types.h:951
-
helios::make_vec3
vec3 make_vec3(float x, float y, float z)
Make a vec3 from three floats.
Definition helios_vector_types.h:587
-
helios::make_vec4
vec4 make_vec4(float x, float y, float z, float w)
Make a vec4 from three floats.
Definition helios_vector_types.h:760
-
helios::make_SphericalCoord
SphericalCoord make_SphericalCoord(float elevation_radians, float azimuth_radians)
Make a SphericalCoord by specifying elevation and azimuth.
Definition helios_vector_types.h:1536
+
helios::Context::getPrimitiveCount
uint getPrimitiveCount() const
Get the total number of Primitives in the Context.
Definition Context.cpp:1749
+
helios::make_vec2
vec2 make_vec2(float x, float y)
Make a vec2 from two floats.
Definition helios_vector_types.h:433
+
helios::make_RGBcolor
RGBcolor make_RGBcolor(float r, float g, float b)
Make an RGBcolor vector.
Definition helios_vector_types.h:954
+
helios::make_vec3
vec3 make_vec3(float x, float y, float z)
Make a vec3 from three floats.
Definition helios_vector_types.h:589
+
helios::make_vec4
vec4 make_vec4(float x, float y, float z, float w)
Make a vec4 from three floats.
Definition helios_vector_types.h:763
+
helios::make_SphericalCoord
SphericalCoord make_SphericalCoord(float elevation_radians, float azimuth_radians)
Make a SphericalCoord by specifying elevation and azimuth.
Definition helios_vector_types.h:1539
CameraCalibration
Camera calibration structure used for camera calibration tasks.
Definition CameraCalibration.h:21
CameraCalibration::writeCalibratedCameraResponses
void writeCalibratedCameraResponses(const std::vector< std::string > &camerareponselabels, const std::string &calibratemark, float scale)
Write calibrated camera response spectra.
Definition CameraCalibration.cpp:366
CameraCalibration::getCameraResponseScale
float getCameraResponseScale(const std::string &cameralabel, const helios::int2 cameraresolution, const std::vector< std::string > &bandlabels, const std::vector< std::vector< float > > &truevalues)
Get camera spectral response scale.
Definition CameraCalibration.cpp:599
@@ -6213,29 +6219,29 @@
RadiationSource::source_rotation
helios::vec3 source_rotation
Rotation (rx,ry,rz) for radiation source (area sources only)
Definition RadiationModel.h:263
RadiationSource::source_type
RadiationSourceType source_type
Types of all radiation sources.
Definition RadiationModel.h:269
RadiationSource::source_fluxes
std::map< std::string, float > source_fluxes
Fluxes of radiation source for all bands.
Definition RadiationModel.h:272
-
helios::RGBcolor
R-G-B color vector.
Definition helios_vector_types.h:841
-
helios::RGBcolor::scale
void scale(float scale_factor)
Scale RGBcolor by some factor.
Definition helios_vector_types.h:907
-
helios::SphericalCoord
Vector of spherical coordinates (elevation,azimuth)
Definition helios_vector_types.h:1468
-
helios::SphericalCoord::zenith
const float & zenith
Zenithal angle (radians)
Definition helios_vector_types.h:1487
-
helios::SphericalCoord::elevation
const float & elevation
Elevation angle (radians)
Definition helios_vector_types.h:1482
-
helios::SphericalCoord::azimuth
float azimuth
Azimuthal angle (radians)
Definition helios_vector_types.h:1489
+
helios::RGBcolor
R-G-B color vector.
Definition helios_vector_types.h:844
+
helios::RGBcolor::scale
void scale(float scale_factor)
Scale RGBcolor by some factor.
Definition helios_vector_types.h:910
+
helios::SphericalCoord
Vector of spherical coordinates (elevation,azimuth)
Definition helios_vector_types.h:1471
+
helios::SphericalCoord::zenith
const float & zenith
Zenithal angle (radians)
Definition helios_vector_types.h:1490
+
helios::SphericalCoord::elevation
const float & elevation
Elevation angle (radians)
Definition helios_vector_types.h:1485
+
helios::SphericalCoord::azimuth
float azimuth
Azimuthal angle (radians)
Definition helios_vector_types.h:1492
helios::int2
Vector of two elements of type 'int'.
Definition helios_vector_types.h:44
helios::int2::y
int y
Second element in vector.
Definition helios_vector_types.h:50
helios::int2::x
int x
First element in vector.
Definition helios_vector_types.h:48
helios::vec2
Vector of two elements of type 'float'.
Definition helios_vector_types.h:346
helios::vec2::x
float x
First element in vector.
Definition helios_vector_types.h:350
helios::vec2::y
float y
Second element in vector.
Definition helios_vector_types.h:352
-
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:502
-
helios::vec3::x
float x
First element in vector.
Definition helios_vector_types.h:506
-
helios::vec3::z
float z
Third element in vector.
Definition helios_vector_types.h:510
-
helios::vec3::normalize
void normalize()
Normalize vector components such that the magnitude is unity.
Definition helios_vector_types.h:513
-
helios::vec3::y
float y
Second element in vector.
Definition helios_vector_types.h:508
-
helios::vec3::magnitude
float magnitude() const
Compute the vector magnitude.
Definition helios_vector_types.h:524
-
helios::vec4
Vector of four elements of type 'float'.
Definition helios_vector_types.h:671
-
helios::vec4::y
float y
Second element in vector.
Definition helios_vector_types.h:677
-
helios::vec4::w
float w
Fourth element in vector.
Definition helios_vector_types.h:681
-
helios::vec4::z
float z
Third element in vector.
Definition helios_vector_types.h:679
-
helios::vec4::x
float x
First element in vector.
Definition helios_vector_types.h:675
+
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:503
+
helios::vec3::normalize
vec3 normalize()
Normalize vector components such that the magnitude is unity.
Definition helios_vector_types.h:514
+
helios::vec3::x
float x
First element in vector.
Definition helios_vector_types.h:507
+
helios::vec3::z
float z
Third element in vector.
Definition helios_vector_types.h:511
+
helios::vec3::y
float y
Second element in vector.
Definition helios_vector_types.h:509
+
helios::vec3::magnitude
float magnitude() const
Compute the vector magnitude.
Definition helios_vector_types.h:526
+
helios::vec4
Vector of four elements of type 'float'.
Definition helios_vector_types.h:673
+
helios::vec4::y
float y
Second element in vector.
Definition helios_vector_types.h:679
+
helios::vec4::w
float w
Fourth element in vector.
Definition helios_vector_types.h:683
+
helios::vec4::z
float z
Third element in vector.
Definition helios_vector_types.h:681
+
helios::vec4::x
float x
First element in vector.
Definition helios_vector_types.h:677
diff --git a/doc/html/_radiation_model_8h.html b/doc/html/_radiation_model_8h.html index 63457e758..72a1872a1 100644 --- a/doc/html/_radiation_model_8h.html +++ b/doc/html/_radiation_model_8h.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
@@ -158,6 +158,9 @@ + + + @@ -191,7 +194,7 @@

sutilHandleError( OptiX_Context, code, __FILE__, __LINE__ ); \
} while(0)
-

Definition at line 1660 of file RadiationModel.h.

+

Definition at line 1669 of file RadiationModel.h.

@@ -244,7 +247,7 @@

-

Definition at line 5743 of file RadiationModel.cpp.

+

Definition at line 5745 of file RadiationModel.cpp.

@@ -263,7 +266,35 @@

-

Definition at line 5753 of file RadiationModel.cpp.

+

Definition at line 5755 of file RadiationModel.cpp.

+ + + + +

◆ validateOutputPath()

+ +
+
+

Functions

bool validateOutputPath (std::ostringstream &output_directory)
 Validates the file path for output file writing by 1) making sure the directory string has a trailing slash, 2) creating the output directory if it does not exist.
 
void sutilHandleError (RTcontext context, RTresult code, const char *file, int line)
 
void sutilReportError (const char *message)
+ + + + + + +
bool validateOutputPath (std::ostringstream & output_directory)
+
+ +

Validates the file path for output file writing by 1) making sure the directory string has a trailing slash, 2) creating the output directory if it does not exist.

+
Parameters
+ + +
[in,out]output_directoryPath to the directory where output files will be written. If the directory does not exist, it will be created.
+
+
+
Returns
True if the output directory is valid, false otherwise.
+ +

Definition at line 5727 of file RadiationModel.cpp.

diff --git a/doc/html/_radiation_model_8h_source.html b/doc/html/_radiation_model_8h_source.html index d80eef33d..a7ab75625 100644 --- a/doc/html/_radiation_model_8h_source.html +++ b/doc/html/_radiation_model_8h_source.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
@@ -365,697 +365,701 @@
301 void optionalOutputPrimitiveData( const char* label );
302
304
-
307 void setDirectRayCount(const std::string &label, size_t N );
-
308
-
310
-
313 void setDiffuseRayCount(const std::string &label, size_t N );
-
314
+
308 void setDirectRayCount(const std::string &label, size_t N );
+
309
+
311
+
315 void setDiffuseRayCount(const std::string &label, size_t N );
316
-
320 void setDiffuseRadiationFlux(const std::string &label, float flux );
-
321
+
318
+
322 void setDiffuseRadiationFlux(const std::string &label, float flux );
323
-
328 void setDiffuseRadiationExtinctionCoeff(const std::string &label, float K, const helios::vec3 &peak_dir );
-
329
+
325
+
330 void setDiffuseRadiationExtinctionCoeff(const std::string &label, float K, const helios::vec3 &peak_dir );
331
-
336 void setDiffuseRadiationExtinctionCoeff(const std::string &label, float K, const helios::SphericalCoord &peak_dir );
-
337
+
333
+
338 void setDiffuseRadiationExtinctionCoeff(const std::string &label, float K, const helios::SphericalCoord &peak_dir );
339
-
343 void setDiffuseSpectrumIntegral( float spectrum_integral);
-
344
+
341
+
345 void setDiffuseSpectrumIntegral( float spectrum_integral);
346
-
350 void setDiffuseSpectrumIntegral( float spectrum_integral, float wavelength1, float wavelength2);
-
351
+
348
+
352 void setDiffuseSpectrumIntegral( float spectrum_integral, float wavelength1, float wavelength2);
353
-
358 void setDiffuseSpectrumIntegral( const std::string &band_label, float spectrum_integral);
-
359
+
355
+
360 void setDiffuseSpectrumIntegral( const std::string &band_label, float spectrum_integral);
361
-
366 void setDiffuseSpectrumIntegral( const std::string &band_label, float spectrum_integral, float wavelength1, float wavelength2);
-
367
+
363
+
368 void setDiffuseSpectrumIntegral( const std::string &band_label, float spectrum_integral, float wavelength1, float wavelength2);
369
-
373 void addRadiationBand(const std::string &label );
-
374
+
371
+
375 void addRadiationBand(const std::string &label );
376
-
381 void addRadiationBand( const std::string &label, float wavelength_min, float wavelength_max );
-
382
+
378
+
383 void addRadiationBand( const std::string &label, float wavelength_min, float wavelength_max );
384
-
388 void copyRadiationBand(const std::string &old_label, const std::string &new_label );
-
389
+
386
+
390 void copyRadiationBand(const std::string &old_label, const std::string &new_label );
391
-
397 void copyRadiationBand(const std::string &old_label, const std::string &new_label, float wavelength_min, float wavelength_max );
-
398
+
393
+
399 void copyRadiationBand(const std::string &old_label, const std::string &new_label, float wavelength_min, float wavelength_max );
400
-
403 bool doesBandExist(const std::string &label ) const;
-
404
+
402
+
405 bool doesBandExist(const std::string &label ) const;
406
-
409 void disableEmission(const std::string &label );
-
410
+
408
+
411 void disableEmission(const std::string &label );
412
-
415 void enableEmission(const std::string &label );
-
416
+
414
+
417 void enableEmission(const std::string &label );
418
-
421 uint addCollimatedRadiationSource();
-
422
+
420
+
423 uint addCollimatedRadiationSource();
424
-
428 uint addCollimatedRadiationSource(const helios::SphericalCoord &direction );
-
429
+
426
+
430 uint addCollimatedRadiationSource(const helios::SphericalCoord &direction );
431
-
435 uint addCollimatedRadiationSource(const helios::vec3 &direction );
-
436
+
433
+
437 uint addCollimatedRadiationSource(const helios::vec3 &direction );
438
-
444 uint addSphereRadiationSource(const helios::vec3 &position, float radius );
-
445
+
440
+
446 uint addSphereRadiationSource(const helios::vec3 &position, float radius );
447
-
450 uint addSunSphereRadiationSource();
-
451
+
449
+
452 uint addSunSphereRadiationSource();
453
-
457 uint addSunSphereRadiationSource(const helios::SphericalCoord &sun_direction );
-
458
+
455
+
459 uint addSunSphereRadiationSource(const helios::SphericalCoord &sun_direction );
460
-
464 uint addSunSphereRadiationSource(const helios::vec3 &sun_direction );
-
465
+
462
+
466 uint addSunSphereRadiationSource(const helios::vec3 &sun_direction );
467
-
473 uint addRectangleRadiationSource( const helios::vec3 &position, const helios::vec2 &size, const helios::vec3& rotation );
-
474
+
469
+
475 uint addRectangleRadiationSource( const helios::vec3 &position, const helios::vec2 &size, const helios::vec3& rotation );
476
-
482 uint addDiskRadiationSource( const helios::vec3 &position, float radius, const helios::vec3& rotation );
-
483
+
478
+
484 uint addDiskRadiationSource( const helios::vec3 &position, float radius, const helios::vec3& rotation );
485
-
488 void deleteRadiationSource(uint sourceID);
-
489
+
487
+
490 void deleteRadiationSource(uint sourceID);
491
-
496 void setSourceSpectrumIntegral(uint source_ID, float source_integral);
-
497
+
493
+
498 void setSourceSpectrumIntegral(uint source_ID, float source_integral);
499
-
504 void setSourceSpectrumIntegral(uint source_ID, float source_integral, float wavelength1, float wavelength2);
-
505
+
501
+
506 void setSourceSpectrumIntegral(uint source_ID, float source_integral, float wavelength1, float wavelength2);
507
-
512 void setSourceFlux(uint source_ID, const std::string &band_label, float flux );
-
513
+
509
+
514 void setSourceFlux(uint source_ID, const std::string &band_label, float flux );
515
-
520 void setSourceFlux(const std::vector<uint> &source_ID, const std::string &band_label, float flux );
-
521
+
517
+
522 void setSourceFlux(const std::vector<uint> &source_ID, const std::string &band_label, float flux );
523
-
528 float getSourceFlux(uint source_ID, const std::string &band_label )const;
-
529
+
525
+
530 float getSourceFlux(uint source_ID, const std::string &band_label )const;
531
-
535 void setSourcePosition(uint source_ID, const helios::vec3 &position );
-
536
+
533
+
537 void setSourcePosition(uint source_ID, const helios::vec3 &position );
538
-
542 void setSourcePosition(uint source_ID, const helios::SphericalCoord &position );
-
543
+
540
+
544 void setSourcePosition(uint source_ID, const helios::SphericalCoord &position );
545
-
549 helios::vec3 getSourcePosition(uint source_ID )const;
-
550
+
547
+
551 helios::vec3 getSourcePosition(uint source_ID )const;
552
-
556 void setSourceSpectrum(uint source_ID, const std::vector<helios::vec2> &spectrum );
-
557
+
554
+
558 void setSourceSpectrum(uint source_ID, const std::vector<helios::vec2> &spectrum );
559
-
563 void setSourceSpectrum(const std::vector<uint> &source_ID, const std::vector<helios::vec2> &spectrum );
-
564
+
561
+
565 void setSourceSpectrum(const std::vector<uint> &source_ID, const std::vector<helios::vec2> &spectrum );
566
-
570 void setSourceSpectrum(uint source_ID, const std::string &spectrum_label );
-
571
+
568
+
572 void setSourceSpectrum(uint source_ID, const std::string &spectrum_label );
573
-
577 void setSourceSpectrum(const std::vector<uint> &source_ID, const std::string &spectrum_label );
-
578
+
575
+
579 void setSourceSpectrum(const std::vector<uint> &source_ID, const std::string &spectrum_label );
580
-
583 void setDiffuseSpectrum( const std::string &spectrum_label );
-
584
+
582
+
585 void setDiffuseSpectrum( const std::string &spectrum_label );
586
-
590 void setDiffuseSpectrum( const std::string &band_label, const std::string &spectrum_label );
-
591
+
588
+
592 void setDiffuseSpectrum( const std::string &band_label, const std::string &spectrum_label );
593
-
597 float getDiffuseFlux( const std::string &band_label ) const;
-
598
-
600 void enableLightModelVisualization();
-
601
-
603 void disableLightModelVisualization();
-
604
-
606 void enableCameraModelVisualization();
-
607
-
609 void disableCameraModelVisualization();
-
610
+
595
+
599 float getDiffuseFlux( const std::string &band_label ) const;
+
600
+
602 void enableLightModelVisualization();
+
603
+
605 void disableLightModelVisualization();
+
606
+
608 void enableCameraModelVisualization();
+
609
+
611 void disableCameraModelVisualization();
612
-
618 float integrateSpectrum( const std::vector<helios::vec2> &object_spectrum, float wavelength1, float wavelength2 ) const;
-
619
+
614
+
620 float integrateSpectrum( const std::vector<helios::vec2> &object_spectrum, float wavelength1, float wavelength2 ) const;
621
-
625 float integrateSpectrum( const std::vector<helios::vec2> &object_spectrum) const;
-
626
+
623
+
627 float integrateSpectrum( const std::vector<helios::vec2> &object_spectrum) const;
628
-
635 float integrateSpectrum(uint source_ID, const std::vector<helios::vec2> &object_spectrum, float wavelength1, float wavelength2 ) const;
-
636
+
630
+
637 float integrateSpectrum(uint source_ID, const std::vector<helios::vec2> &object_spectrum, float wavelength1, float wavelength2 ) const;
638
-
644 float integrateSpectrum(uint source_ID, const std::vector<helios::vec2> &object_spectrum, const std::vector<helios::vec2> &camera_spectrum ) const;
-
645
+
640
+
646 float integrateSpectrum(uint source_ID, const std::vector<helios::vec2> &object_spectrum, const std::vector<helios::vec2> &camera_spectrum ) const;
647
-
652 float integrateSpectrum( const std::vector<helios::vec2> &object_spectrum, const std::vector<helios::vec2> &camera_spectrum ) const;
-
653
+
649
+
654 float integrateSpectrum( const std::vector<helios::vec2> &object_spectrum, const std::vector<helios::vec2> &camera_spectrum ) const;
655
-
661 float integrateSourceSpectrum( uint source_ID, float wavelength1, float wavelength2 ) const;
-
662
+
657
+
663 float integrateSourceSpectrum( uint source_ID, float wavelength1, float wavelength2 ) const;
664
-
669 void scaleSpectrum( const std::string &existing_global_data_label, const std::string &new_global_data_label, float scale_factor ) const;
-
670
+
666
+
671 void scaleSpectrum( const std::string &existing_global_data_label, const std::string &new_global_data_label, float scale_factor ) const;
672
-
676 void scaleSpectrum( const std::string &global_data_label, float scale_factor ) const;
-
677
+
674
+
678 void scaleSpectrum( const std::string &global_data_label, float scale_factor ) const;
679
-
685 void scaleSpectrumRandomly( const std::string &existing_global_data_label, const std::string &new_global_data_label, float minimum_scale_factor, float maximum_scale_factor ) const;
-
686
+
681
+
687 void scaleSpectrumRandomly( const std::string &existing_global_data_label, const std::string &new_global_data_label, float minimum_scale_factor, float maximum_scale_factor ) const;
688
-
694 void blendSpectra( const std::string &new_spectrum_label, const std::vector<std::string> &spectrum_labels, const std::vector<float> &weights ) const;
-
695
+
690
+
696 void blendSpectra( const std::string &new_spectrum_label, const std::vector<std::string> &spectrum_labels, const std::vector<float> &weights ) const;
697
-
702 void blendSpectraRandomly( const std::string &new_spectrum_label, const std::vector<std::string> &spectrum_labels ) const;
-
703
+
699
+
704 void blendSpectraRandomly( const std::string &new_spectrum_label, const std::vector<std::string> &spectrum_labels ) const;
705
-
709 void setScatteringDepth(const std::string &label, uint depth );
-
710
+
707
+
711 void setScatteringDepth(const std::string &label, uint depth );
712
-
716 void setMinScatterEnergy(const std::string &label, uint energy );
-
717
+
714
+
718 void setMinScatterEnergy(const std::string &label, uint energy );
719
-
723 void enforcePeriodicBoundary(const std::string &boundary );
-
724
+
721
+
725 void enforcePeriodicBoundary(const std::string &boundary );
726
-
734 void addRadiationCamera(const std::string &camera_label, const std::vector<std::string> &band_label, const helios::vec3 &position, const helios::vec3 &lookat, const CameraProperties &camera_properties, uint antialiasing_samples);
-
735
+
728
+
736 void addRadiationCamera(const std::string &camera_label, const std::vector<std::string> &band_label, const helios::vec3 &position, const helios::vec3 &lookat, const CameraProperties &camera_properties, uint antialiasing_samples);
737
-
745 void addRadiationCamera(const std::string &camera_label, const std::vector<std::string> &band_label, const helios::vec3 &position, const helios::SphericalCoord &viewing_direction, const CameraProperties &camera_properties, uint antialiasing_samples);
-
746
-
747
+
739
+
747 void addRadiationCamera(const std::string &camera_label, const std::vector<std::string> &band_label, const helios::vec3 &position, const helios::SphericalCoord &viewing_direction, const CameraProperties &camera_properties, uint antialiasing_samples);
+
748
749
-
755 void setCameraSpectralResponse( const std::string &camera_label, const std::string &band_label, const std::string &global_data );
-
756
+
751
+
757 void setCameraSpectralResponse( const std::string &camera_label, const std::string &band_label, const std::string &global_data );
758
-
762 void setCameraPosition( const std::string &camera_label, const helios::vec3& position );
-
763
+
760
+
764 void setCameraPosition( const std::string &camera_label, const helios::vec3& position );
765
-
769 helios::vec3 getCameraPosition(const std::string &camera_label) const;
-
770
+
767
+
771 helios::vec3 getCameraPosition(const std::string &camera_label) const;
772
-
776 void setCameraLookat( const std::string &camera_label, const helios::vec3& lookat );
-
777
+
774
+
778 void setCameraLookat( const std::string &camera_label, const helios::vec3& lookat );
779
-
783 helios::vec3 getCameraLookat(const std::string &camera_label) const;
-
784
+
781
+
785 helios::vec3 getCameraLookat(const std::string &camera_label) const;
786
-
790 void setCameraOrientation( const std::string &camera_label, const helios::vec3& direction );
-
791
+
788
+
792 void setCameraOrientation( const std::string &camera_label, const helios::vec3& direction );
793
-
797 void setCameraOrientation( const std::string &camera_label, const helios::SphericalCoord& direction );
-
798
+
795
+
799 void setCameraOrientation( const std::string &camera_label, const helios::SphericalCoord& direction );
800
-
804 helios::SphericalCoord getCameraOrientation(const std::string &camera_label) const;
-
805
+
802
+
806 helios::SphericalCoord getCameraOrientation(const std::string &camera_label) const;
807
-
810 std::vector<std::string> getAllCameraLabels();
-
811
+
809
+
812 std::vector<std::string> getAllCameraLabels();
813
-
817 void updateGeometry();
-
818
+
815
+
819 void updateGeometry();
820
-
825 void updateGeometry( const std::vector<uint>& UUIDs );
-
826
+
822
+
827 void updateGeometry( const std::vector<uint>& UUIDs );
828
-
832 void runBand( const std::string &label );
-
833
+
830
+
834 void runBand( const std::string &label );
835
-
839 void runBand( const std::vector<std::string> &labels );
-
840
-
842 std::vector<float> getTotalAbsorbedFlux();
-
843
-
845 float getSkyEnergy();
-
846
+
837
+
841 void runBand( const std::vector<std::string> &labels );
+
842
+
844 std::vector<float> getTotalAbsorbedFlux();
+
845
+
847 float getSkyEnergy();
848
-
853 float calculateGtheta(helios::Context* context, helios::vec3 view_direction );
-
854
-
855 void setCameraCalibration(CameraCalibration *CameraCalibration);
+
850
+
855 float calculateGtheta(helios::Context* context, helios::vec3 view_direction );
856
+
857 void setCameraCalibration(CameraCalibration *CameraCalibration);
858
-
866 void updateCameraResponse(const std::string &orginalcameralabel, const std::vector<std::string> &sourcelabels_raw,
-
867 const std::vector<std::string>& cameraresponselabels, helios::vec2 &wavelengthrange,
-
868 const std::vector<std::vector<float>> &truevalues, const std::string &calibratedmark);
-
869
+
860
+
868 void updateCameraResponse(const std::string &orginalcameralabel, const std::vector<std::string> &sourcelabels_raw,
+
869 const std::vector<std::string>& cameraresponselabels, helios::vec2 &wavelengthrange,
+
870 const std::vector<std::vector<float>> &truevalues, const std::string &calibratedmark);
871
-
880 float getCameraResponseScale(const std::string &orginalcameralabel, const std::vector<std::string>& cameraresponselabels,
-
881 const std::vector<std::string>& bandlabels, const std::vector<std::string> &sourcelabels,
-
882 helios::vec2 &wavelengthrange, const std::vector<std::vector<float>> &truevalues);
-
883
+
873
+
882 float getCameraResponseScale(const std::string &orginalcameralabel, const std::vector<std::string>& cameraresponselabels,
+
883 const std::vector<std::string>& bandlabels, const std::vector<std::string> &sourcelabels,
+
884 helios::vec2 &wavelengthrange, const std::vector<std::vector<float>> &truevalues);
885
-
895 void runRadiationImaging(const std::string& cameralabel, const std::vector<std::string>& sourcelabels, const std::vector<std::string>& bandlabels,
-
896 const std::vector<std::string>& cameraresponselabels, helios::vec2 wavelengthrange,
-
897 float fluxscale = 1, float diffusefactor = 0.0005, uint scatteringdepth = 4);
-
898
+
887
+
897 void runRadiationImaging(const std::string& cameralabel, const std::vector<std::string>& sourcelabels, const std::vector<std::string>& bandlabels,
+
898 const std::vector<std::string>& cameraresponselabels, helios::vec2 wavelengthrange,
+
899 float fluxscale = 1, float diffusefactor = 0.0005, uint scatteringdepth = 4);
900
-
910 void runRadiationImaging(const std::vector<std::string>& cameralabels, const std::vector<std::string>& sourcelabels, const std::vector<std::string>& bandlabels,
-
911 const std::vector<std::string>& cameraresponselabels, helios::vec2 wavelengthrange,
-
912 float fluxscale = 1, float diffusefactor = 0.0005, uint scatteringdepth = 4);
-
913
+
902
+
912 void runRadiationImaging(const std::vector<std::string>& cameralabels, const std::vector<std::string>& sourcelabels, const std::vector<std::string>& bandlabels,
+
913 const std::vector<std::string>& cameraresponselabels, helios::vec2 wavelengthrange,
+
914 float fluxscale = 1, float diffusefactor = 0.0005, uint scatteringdepth = 4);
915
-
923 void writeCameraImage(const std::string &camera, const std::vector<std::string> &bands, const std::string &imagefile_base, const std::string &image_path = "./", int frame = -1, float flux_to_pixel_conversion = 1.f);
-
924
+
917
+
925 void writeCameraImage(const std::string &camera, const std::vector<std::string> &bands, const std::string &imagefile_base, const std::string &image_path = "./", int frame = -1, float flux_to_pixel_conversion = 1.f);
926
-
933 void writeNormCameraImage(const std::string &camera, const std::vector<std::string> &bands, const std::string &imagefile_base, const std::string &image_path = "./", int frame = -1);
-
934
+
928
+
935 void writeNormCameraImage(const std::string &camera, const std::vector<std::string> &bands, const std::string &imagefile_base, const std::string &image_path = "./", int frame = -1);
936
-
943 void writeCameraImageData(const std::string &camera, const std::string &band, const std::string &imagefile_base, const std::string &image_path = "./", int frame = -1);
-
944
+
938
+
945 void writeCameraImageData(const std::string &camera, const std::string &band, const std::string &imagefile_base, const std::string &image_path = "./", int frame = -1);
946
-
954 void writePrimitiveDataLabelMap(const std::string &cameralabel, const std::string &primitive_data_label, const std::string &imagefile_base, const std::string &image_path = "./", int frame = -1, float padvalue = NAN);
-
955
+
948
+
956 void writePrimitiveDataLabelMap(const std::string &cameralabel, const std::string &primitive_data_label, const std::string &imagefile_base, const std::string &image_path = "./", int frame = -1, float padvalue = NAN);
957
-
965 void writeObjectDataLabelMap(const std::string &cameralabel, const std::string &object_data_label, const std::string &imagefile_base, const std::string &image_path = "./", int frame = -1, float padvalue = NAN);
-
966
+
959
+
967 void writeObjectDataLabelMap(const std::string &cameralabel, const std::string &object_data_label, const std::string &imagefile_base, const std::string &image_path = "./", int frame = -1, float padvalue = NAN);
968
-
974 void writeDepthImageData(const std::string &cameralabel, const std::string &imagefile_base, const std::string &image_path = "./", int frame = -1);
-
975
+
970
+
976 void writeDepthImageData(const std::string &cameralabel, const std::string &imagefile_base, const std::string &image_path = "./", int frame = -1);
977
-
984 void writeNormDepthImage(const std::string &cameralabel, const std::string &imagefile_base, float max_depth, const std::string &image_path = "./", int frame = -1);
-
985
+
979
+
986 void writeNormDepthImage(const std::string &cameralabel, const std::string &imagefile_base, float max_depth, const std::string &image_path = "./", int frame = -1);
987
-
995 void writeImageBoundingBoxes(const std::string &cameralabel, const std::string &primitive_data_label, uint object_class_ID, const std::string &imagefile_base, const std::string &image_path = "./", bool append_label_file = false, int frame = -1);
-
996
+
989
+
997 void writeImageBoundingBoxes(const std::string &cameralabel, const std::string &primitive_data_label, uint object_class_ID, const std::string &imagefile_base, const std::string &image_path = "./", bool append_label_file = false, int frame = -1);
998
-
1006 void writeImageBoundingBoxes_ObjectData(const std::string &cameralabel, const std::string &object_data_label, uint object_class_ID, const std::string &imagefile_base, const std::string &image_path = "./", bool append_label_file = false, int frame = -1);
-
1007
+
1000
+
1008 void writeImageBoundingBoxes_ObjectData(const std::string &cameralabel, const std::string &object_data_label, uint object_class_ID, const std::string &imagefile_base, const std::string &image_path = "./", bool append_label_file = false, int frame = -1);
1009
-
1014 void setPadValue(const std::string &cameralabel, const std::vector<std::string> &bandlabels, const std::vector<float> &padvalues);
-
1015
+
1011
+
1016 void setPadValue(const std::string &cameralabel, const std::vector<std::string> &bandlabels, const std::vector<float> &padvalues);
1017
-
1027 void calibrateCamera(const std::string &orginalcameralabel, const std::vector<std::string> &sourcelabels,
-
1028 const std::vector<std::string>& cameraresponselabels, const std::vector<std::string> &bandlabels, const float scalefactor,
-
1029 const std::vector<std::vector<float>> &truevalues, const std::string &calibratedmark);
-
1030
+
1019
+
1029 void calibrateCamera(const std::string &orginalcameralabel, const std::vector<std::string> &sourcelabels,
+
1030 const std::vector<std::string>& cameraresponselabels, const std::vector<std::string> &bandlabels, const float scalefactor,
+
1031 const std::vector<std::vector<float>> &truevalues, const std::string &calibratedmark);
1032
-
1039 void calibrateCamera(const std::string &originalcameralabel, const float scalefactor,
-
1040 const std::vector<std::vector<float>> &truevalues, const std::string &calibratedmark);
-
1041
-
1042
+
1034
+
1041 void calibrateCamera(const std::string &originalcameralabel, const float scalefactor,
+
1042 const std::vector<std::vector<float>> &truevalues, const std::string &calibratedmark);
1043
-
1044protected:
+
1044
1045
-
1047 bool message_flag;
-
1048
-
1050 helios::Context* context;
-
1051
-
1052 CameraCalibration *cameracalibration;
-
1053 bool calibration_flag = false;
-
1054
-
1056 std::vector<uint> primitiveID;
-
1057
-
1059 std::vector<uint> context_UUIDs;
-
1060
-
1061 // --- Radiation Band Variables --- //
+
1046protected:
+
1047
+
1049 bool message_flag;
+
1050
+
1052 helios::Context* context;
+
1053
+
1054 CameraCalibration *cameracalibration;
+
1055 bool calibration_flag = false;
+
1056
+
1058 std::vector<uint> primitiveID;
+
1059
+
1061 std::vector<uint> context_UUIDs;
1062
-
1063 std::map<std::string,RadiationBand> radiation_bands;
+
1063 // --- Radiation Band Variables --- //
1064
-
1065 std::vector<bool> scattering_iterations_needed;
+
1065 std::map<std::string,RadiationBand> radiation_bands;
1066
-
1067 // --- radiation source variables --- //
+
1067 std::vector<bool> scattering_iterations_needed;
1068
-
1069 std::vector<RadiationSource> radiation_sources;
+
1069 // --- radiation source variables --- //
1070
-
1072 RTvariable Nsources_RTvariable;
-
1073
-
1075 RTbuffer source_positions_RTbuffer;
-
1077 RTvariable source_positions_RTvariable;
-
1078
-
1080 RTbuffer source_types_RTbuffer;
-
1082 RTvariable source_types_RTvariable;
-
1083
-
1085 RTbuffer source_fluxes_RTbuffer;
-
1087 RTvariable source_fluxes_RTvariable;
-
1088
-
1090 RTbuffer source_widths_RTbuffer;
-
1092 RTvariable source_widths_RTvariable;
-
1093
-
1094
-
1096 RTbuffer source_rotations_RTbuffer;
-
1098 RTvariable source_rotations_RTvariable;
-
1099
-
1100 // --- Camera Variables --- //
+
1071 std::vector<RadiationSource> radiation_sources;
+
1072
+
1074 RTvariable Nsources_RTvariable;
+
1075
+
1077 RTbuffer source_positions_RTbuffer;
+
1079 RTvariable source_positions_RTvariable;
+
1080
+
1082 RTbuffer source_types_RTbuffer;
+
1084 RTvariable source_types_RTvariable;
+
1085
+
1087 RTbuffer source_fluxes_RTbuffer;
+
1089 RTvariable source_fluxes_RTvariable;
+
1090
+
1092 RTbuffer source_widths_RTbuffer;
+
1094 RTvariable source_widths_RTvariable;
+
1095
+
1096
+
1098 RTbuffer source_rotations_RTbuffer;
+
1100 RTvariable source_rotations_RTvariable;
1101
-
1103 std::map<std::string,RadiationCamera> cameras;
-
1104
-
1106 RTvariable camera_position_RTvariable;
-
1107
-
1109 RTvariable camera_direction_RTvariable;
-
1110
-
1112 RTvariable camera_lens_diameter_RTvariable;
-
1113
-
1115 RTvariable FOV_aspect_RTvariable;
-
1116
-
1118 RTvariable camera_focal_length_RTvariable;
-
1119
-
1121 RTvariable camera_viewplane_length_RTvariable;
-
1122
-
1124 RTvariable Ncameras_RTvariable;
-
1125
-
1127 RTvariable camera_ID_RTvariable;
-
1128
-
1130 std::map<std::string,std::vector<uint>> spectral_reflectivity_data;
-
1131
-
1133 std::map<std::string,std::vector<uint>> spectral_transmissivity_data;
-
1134
-
1135 std::vector<helios::vec2> generateGaussianCameraResponse(float FWHM, float mu, float centrawavelength, const helios::int2 &wavebanrange);
+
1102 // --- Camera Variables --- //
+
1103
+
1105 std::map<std::string,RadiationCamera> cameras;
+
1106
+
1108 RTvariable camera_position_RTvariable;
+
1109
+
1111 RTvariable camera_direction_RTvariable;
+
1112
+
1114 RTvariable camera_lens_diameter_RTvariable;
+
1115
+
1117 RTvariable FOV_aspect_RTvariable;
+
1118
+
1120 RTvariable camera_focal_length_RTvariable;
+
1121
+
1123 RTvariable camera_viewplane_length_RTvariable;
+
1124
+
1126 RTvariable Ncameras_RTvariable;
+
1127
+
1129 RTvariable camera_ID_RTvariable;
+
1130
+
1132 std::map<std::string,std::vector<uint>> spectral_reflectivity_data;
+
1133
+
1135 std::map<std::string,std::vector<uint>> spectral_transmissivity_data;
1136
-
1137 // --- Constants and Defaults --- //
+
1137 std::vector<helios::vec2> generateGaussianCameraResponse(float FWHM, float mu, float centrawavelength, const helios::int2 &wavebanrange);
1138
-
1140 float sigma = 5.6703744E-8;
-
1141
-
1143 float scene_radius;
-
1144
-
1146 float rho_default;
-
1147
-
1149 float tau_default;
-
1150
-
1152 float eps_default;
-
1153
-
1155 float kappa_default;
-
1156
-
1158 float sigmas_default;
-
1159
-
1161 float temperature_default;
-
1162
-
1163 // --- Functions --- //
+
1139 // --- Constants and Defaults --- //
+
1140
+
1142 float sigma = 5.6703744E-8;
+
1143
+
1145 float scene_radius;
+
1146
+
1148 float rho_default;
+
1149
+
1151 float tau_default;
+
1152
+
1154 float eps_default;
+
1155
+
1157 float kappa_default;
+
1158
+
1160 float sigmas_default;
+
1161
+
1163 float temperature_default;
1164
-
1166 void initializeOptiX();
-
1167
+
1165 // --- Functions --- //
+
1166
+
1168 void initializeOptiX();
1169
-
1172 void updateRadiativeProperties( const std::vector<std::string> &labels );
-
1173
+
1171
+
1174 void updateRadiativeProperties( const std::vector<std::string> &labels );
1175
-
1179 std::vector<helios::vec2> loadSpectralData( const std::string &global_data_label )const;
-
1180
+
1177
+
1181 std::vector<helios::vec2> loadSpectralData( const std::string &global_data_label )const;
1182
1184
-
1187 std::vector<float> getOptiXbufferData( RTbuffer buffer );
-
1188
+
1186
+
1189 std::vector<float> getOptiXbufferData( RTbuffer buffer );
1190
-
1193 std::vector<double> getOptiXbufferData_d( RTbuffer buffer );
-
1194
+
1192
+
1195 std::vector<double> getOptiXbufferData_d( RTbuffer buffer );
1196
-
1199 std::vector<uint> getOptiXbufferData_ui( RTbuffer buffer );
-
1200
-
1201 void addBuffer( const char* name, RTbuffer& buffer, RTvariable& variable, RTbuffertype type, RTformat format, size_t dimension );
+
1198
+
1201 std::vector<uint> getOptiXbufferData_ui( RTbuffer buffer );
1202
+
1203 void addBuffer( const char* name, RTbuffer& buffer, RTvariable& variable, RTbuffertype type, RTformat format, size_t dimension );
1204
-
1208 void zeroBuffer1D(RTbuffer &buffer, size_t bsize );
-
1209
+
1206
+
1210 void zeroBuffer1D(RTbuffer &buffer, size_t bsize );
1211
-
1215 void copyBuffer1D( RTbuffer &buffer, RTbuffer &buffer_copy );
-
1216
+
1213
+
1217 void copyBuffer1D( RTbuffer &buffer, RTbuffer &buffer_copy );
1218
-
1222 void initializeBuffer1Dd(RTbuffer &buffer, const std::vector<double> &array );
-
1224
-
1228 void initializeBuffer1Df(RTbuffer &buffer, const std::vector<float> &array );
-
1230
-
1234 void initializeBuffer1Dfloat2(RTbuffer &buffer, const std::vector<optix::float2> &array );
-
1236
-
1240 void initializeBuffer1Dfloat3(RTbuffer &buffer, const std::vector<optix::float3> &array );
-
1242
-
1246 void initializeBuffer1Dfloat4(RTbuffer &buffer, const std::vector<optix::float4> &array );
-
1248
-
1252 void initializeBuffer1Di(RTbuffer &buffer, const std::vector<int> &array );
-
1254
-
1258 void initializeBuffer1Dui(RTbuffer &buffer, const std::vector<uint> &array );
-
1260
-
1264 void initializeBuffer1Dint2(RTbuffer &buffer, const std::vector<optix::int2> &array );
-
1266
-
1270 void initializeBuffer1Dint3(RTbuffer &buffer, const std::vector<optix::int3> &array );
-
1272
-
1276 void initializeBuffer1Dchar(RTbuffer &buffer, const std::vector<char> &array );
-
1278
-
1282 void zeroBuffer2D(RTbuffer &buffer, optix::int2 bsize );
-
1284
-
1288 void initializeBuffer2Dd(RTbuffer &buffer, const std::vector<std::vector<double>> &array );
-
1290
-
1294 void initializeBuffer2Df(RTbuffer &buffer, const std::vector<std::vector<float>> &array );
-
1296
-
1300 void initializeBuffer2Dfloat2(RTbuffer &buffer, const std::vector<std::vector<optix::float2>> &array );
-
1302
-
1306 void initializeBuffer2Dfloat3(RTbuffer &buffer, const std::vector<std::vector<optix::float3>> &array );
-
1308
-
1312 void initializeBuffer2Dfloat4(RTbuffer &buffer, const std::vector<std::vector<optix::float4>> &array );
-
1314
-
1318 void initializeBuffer2Di(RTbuffer &buffer, const std::vector<std::vector<int>> &array );
-
1320
-
1324 void initializeBuffer2Dui(RTbuffer &buffer, const std::vector<std::vector<uint>> &array );
-
1326
-
1330 void initializeBuffer2Dint2(RTbuffer &buffer, const std::vector<std::vector<optix::int2>> &array );
-
1332
-
1336 void initializeBuffer2Dint3(RTbuffer &buffer, const std::vector<std::vector<optix::int3>> &array );
-
1338
-
1342 void initializeBuffer2Dbool(RTbuffer &buffer, const std::vector<std::vector<bool>> &array );
-
1343
+
1220
+
1224 void initializeBuffer1Dd(RTbuffer &buffer, const std::vector<double> &array );
+
1226
+
1230 void initializeBuffer1Df(RTbuffer &buffer, const std::vector<float> &array );
+
1232
+
1236 void initializeBuffer1Dfloat2(RTbuffer &buffer, const std::vector<optix::float2> &array );
+
1238
+
1242 void initializeBuffer1Dfloat3(RTbuffer &buffer, const std::vector<optix::float3> &array );
+
1244
+
1248 void initializeBuffer1Dfloat4(RTbuffer &buffer, const std::vector<optix::float4> &array );
+
1250
+
1254 void initializeBuffer1Di(RTbuffer &buffer, const std::vector<int> &array );
+
1256
+
1260 void initializeBuffer1Dui(RTbuffer &buffer, const std::vector<uint> &array );
+
1262
+
1266 void initializeBuffer1Dint2(RTbuffer &buffer, const std::vector<optix::int2> &array );
+
1268
+
1272 void initializeBuffer1Dint3(RTbuffer &buffer, const std::vector<optix::int3> &array );
+
1274
+
1278 void initializeBuffer1Dchar(RTbuffer &buffer, const std::vector<char> &array );
+
1280
+
1284 void zeroBuffer2D(RTbuffer &buffer, optix::int2 bsize );
+
1286
+
1290 void initializeBuffer2Dd(RTbuffer &buffer, const std::vector<std::vector<double>> &array );
+
1292
+
1296 void initializeBuffer2Df(RTbuffer &buffer, const std::vector<std::vector<float>> &array );
+
1298
+
1302 void initializeBuffer2Dfloat2(RTbuffer &buffer, const std::vector<std::vector<optix::float2>> &array );
+
1304
+
1308 void initializeBuffer2Dfloat3(RTbuffer &buffer, const std::vector<std::vector<optix::float3>> &array );
+
1310
+
1314 void initializeBuffer2Dfloat4(RTbuffer &buffer, const std::vector<std::vector<optix::float4>> &array );
+
1316
+
1320 void initializeBuffer2Di(RTbuffer &buffer, const std::vector<std::vector<int>> &array );
+
1322
+
1326 void initializeBuffer2Dui(RTbuffer &buffer, const std::vector<std::vector<uint>> &array );
+
1328
+
1332 void initializeBuffer2Dint2(RTbuffer &buffer, const std::vector<std::vector<optix::int2>> &array );
+
1334
+
1338 void initializeBuffer2Dint3(RTbuffer &buffer, const std::vector<std::vector<optix::int3>> &array );
+
1340
+
1344 void initializeBuffer2Dbool(RTbuffer &buffer, const std::vector<std::vector<bool>> &array );
1345
-
1349 template <typename anytype>
-
1350 void initializeBuffer3D(RTbuffer &buffer, const std::vector<std::vector<std::vector<anytype>>> &array );
-
1351
-
1352 void buildLightModelGeometry( uint sourceID );
+
1347
+
1351 template <typename anytype>
+
1352 void initializeBuffer3D(RTbuffer &buffer, const std::vector<std::vector<std::vector<anytype>>> &array );
1353
-
1354 void buildCameraModelGeometry( const std::string &cameralabel );
+
1354 void buildLightModelGeometry( uint sourceID );
1355
-
1356 void updateLightModelPosition( uint sourceID, const helios::vec3 &delta_position );
+
1356 void buildCameraModelGeometry( const std::string &cameralabel );
1357
-
1358 void updateCameraModelPosition(const std::string &cameralabel);
+
1358 void updateLightModelPosition( uint sourceID, const helios::vec3 &delta_position );
1359
-
1360 std::map<uint,std::vector<uint>> source_model_UUIDs;
-
1361 std::map<std::string,std::vector<uint>> camera_model_UUIDs;
-
1362
-
1363 /* Primary RT API objects */
+
1360 void updateCameraModelPosition(const std::string &cameralabel);
+
1361
+
1362 std::map<uint,std::vector<uint>> source_model_UUIDs;
+
1363 std::map<std::string,std::vector<uint>> camera_model_UUIDs;
1364
-
1366 RTcontext OptiX_Context;
-
1368 RTprogram direct_raygen;
-
1370 RTprogram diffuse_raygen;
-
1371
-
1373 RTprogram camera_raygen;
-
1375 RTprogram pixel_label_raygen;
-
1376
-
1377 /* Variables */
+
1365 /* Primary RT API objects */
+
1366
+
1368 RTcontext OptiX_Context;
+
1370 RTprogram direct_raygen;
+
1372 RTprogram diffuse_raygen;
+
1373
+
1375 RTprogram camera_raygen;
+
1377 RTprogram pixel_label_raygen;
1378
-
1380 RTvariable random_seed_RTvariable;
-
1381
-
1383 RTvariable launch_offset_RTvariable;
-
1384
-
1386 RTvariable max_scatters_RTvariable;
-
1387 RTbuffer max_scatters_RTbuffer;
-
1388
-
1390 RTvariable Nbands_RTvariable;
-
1391
-
1393 RTvariable band_launch_flag_RTvariable;
-
1394 RTbuffer band_launch_flag_RTbuffer;
-
1395
-
1397 RTvariable Nprimitives_RTvariable;
-
1398
-
1400 RTvariable diffuse_flux_RTvariable;
-
1401 RTbuffer diffuse_flux_RTbuffer;
-
1402
-
1404 RTvariable diffuse_extinction_RTvariable;
-
1405 RTbuffer diffuse_extinction_RTbuffer;
-
1406
-
1408 RTvariable diffuse_peak_dir_RTvariable;
-
1409 RTbuffer diffuse_peak_dir_RTbuffer;
-
1410
-
1412 RTvariable diffuse_dist_norm_RTvariable;
-
1413 RTbuffer diffuse_dist_norm_RTbuffer;
-
1414
-
1416 RTvariable emission_flag_RTvariable;
-
1417 RTbuffer emission_flag_RTbuffer;
-
1418
-
1420 RTvariable bound_sphere_radius_RTvariable;
-
1422 RTvariable bound_sphere_center_RTvariable;
-
1423
-
1425 helios::vec2 periodic_flag;
-
1426 RTvariable periodic_flag_RTvariable;
-
1427
-
1429 RTvariable Rsky_RTvariable;
-
1430
-
1432 RTbuffer rho_RTbuffer;
-
1434 RTvariable rho_RTvariable;
-
1436 RTbuffer tau_RTbuffer;
-
1438 RTvariable tau_RTvariable;
-
1439
-
1441 RTbuffer rho_cam_RTbuffer;
-
1443 RTvariable rho_cam_RTvariable;
-
1445 RTbuffer tau_cam_RTbuffer;
-
1447 RTvariable tau_cam_RTvariable;
-
1448
-
1450 RTbuffer primitive_type_RTbuffer;
-
1452 RTvariable primitive_type_RTvariable;
-
1453
-
1455 RTbuffer primitive_area_RTbuffer;
-
1457 RTvariable primitive_area_RTvariable;
-
1458
-
1460 RTbuffer patch_UUID_RTbuffer;
-
1461 RTbuffer triangle_UUID_RTbuffer;
-
1462 RTbuffer disk_UUID_RTbuffer;
-
1463 RTbuffer tile_UUID_RTbuffer;
-
1464 RTbuffer voxel_UUID_RTbuffer;
-
1465 RTbuffer bbox_UUID_RTbuffer;
-
1467 RTvariable patch_UUID_RTvariable;
-
1468 RTvariable triangle_UUID_RTvariable;
-
1469 RTvariable disk_UUID_RTvariable;
-
1470 RTvariable tile_UUID_RTvariable;
-
1471 RTvariable voxel_UUID_RTvariable;
-
1472 RTvariable bbox_UUID_RTvariable;
-
1473
-
1475 RTbuffer objectID_RTbuffer;
-
1477 RTvariable objectID_RTvariable;
-
1478
-
1480 RTbuffer primitiveID_RTbuffer;
-
1482 RTvariable primitiveID_RTvariable;
-
1483
-
1485 RTbuffer twosided_flag_RTbuffer;
-
1487 RTvariable twosided_flag_RTvariable;
-
1488
-
1490 RTbuffer Rsky_RTbuffer;
-
1491
-
1492 //-- Patch Buffers --//
-
1493 RTbuffer patch_vertices_RTbuffer;
-
1494 RTvariable patch_vertices_RTvariable;
-
1495
-
1496 //-- Triangle Buffers --//
-
1497 RTbuffer triangle_vertices_RTbuffer;
-
1498 RTvariable triangle_vertices_RTvariable;
-
1499
-
1500 //-- Disk Buffers --//
-
1501 RTbuffer disk_centers_RTbuffer;
-
1502 RTvariable disk_centers_RTvariable;
-
1503 RTbuffer disk_radii_RTbuffer;
-
1504 RTvariable disk_radii_RTvariable;
-
1505 RTbuffer disk_normals_RTbuffer;
-
1506 RTvariable disk_normals_RTvariable;
-
1507
-
1508 //-- Tile Buffers --//
-
1509 RTbuffer tile_vertices_RTbuffer;
-
1510 RTvariable tile_vertices_RTvariable;
-
1511
-
1512 //-- Voxel Buffers --//
-
1513 RTbuffer voxel_vertices_RTbuffer;
-
1514 RTvariable voxel_vertices_RTvariable;
-
1515
-
1516 //-- Bounding Box Buffers --//
-
1517 RTbuffer bbox_vertices_RTbuffer;
-
1518 RTvariable bbox_vertices_RTvariable;
-
1519
-
1520 //-- Object Buffers --//
-
1521 RTbuffer object_subdivisions_RTbuffer;
-
1522 RTvariable object_subdivisions_RTvariable;
-
1523
-
1524 /* Output Buffers */
+
1379 /* Variables */
+
1380
+
1382 RTvariable random_seed_RTvariable;
+
1383
+
1385 RTvariable launch_offset_RTvariable;
+
1386
+
1388 RTvariable max_scatters_RTvariable;
+
1389 RTbuffer max_scatters_RTbuffer;
+
1390
+
1392 RTvariable Nbands_RTvariable;
+
1393
+
1395 RTvariable band_launch_flag_RTvariable;
+
1396 RTbuffer band_launch_flag_RTbuffer;
+
1397
+
1399 RTvariable Nprimitives_RTvariable;
+
1400
+
1402 RTvariable diffuse_flux_RTvariable;
+
1403 RTbuffer diffuse_flux_RTbuffer;
+
1404
+
1406 RTvariable diffuse_extinction_RTvariable;
+
1407 RTbuffer diffuse_extinction_RTbuffer;
+
1408
+
1410 RTvariable diffuse_peak_dir_RTvariable;
+
1411 RTbuffer diffuse_peak_dir_RTbuffer;
+
1412
+
1414 RTvariable diffuse_dist_norm_RTvariable;
+
1415 RTbuffer diffuse_dist_norm_RTbuffer;
+
1416
+
1418 RTvariable emission_flag_RTvariable;
+
1419 RTbuffer emission_flag_RTbuffer;
+
1420
+
1422 RTvariable bound_sphere_radius_RTvariable;
+
1424 RTvariable bound_sphere_center_RTvariable;
+
1425
+
1427 helios::vec2 periodic_flag;
+
1428 RTvariable periodic_flag_RTvariable;
+
1429
+
1431 RTvariable Rsky_RTvariable;
+
1432
+
1434 RTbuffer rho_RTbuffer;
+
1436 RTvariable rho_RTvariable;
+
1438 RTbuffer tau_RTbuffer;
+
1440 RTvariable tau_RTvariable;
+
1441
+
1443 RTbuffer rho_cam_RTbuffer;
+
1445 RTvariable rho_cam_RTvariable;
+
1447 RTbuffer tau_cam_RTbuffer;
+
1449 RTvariable tau_cam_RTvariable;
+
1450
+
1452 RTbuffer primitive_type_RTbuffer;
+
1454 RTvariable primitive_type_RTvariable;
+
1455
+
1457 RTbuffer primitive_area_RTbuffer;
+
1459 RTvariable primitive_area_RTvariable;
+
1460
+
1462 RTbuffer patch_UUID_RTbuffer;
+
1463 RTbuffer triangle_UUID_RTbuffer;
+
1464 RTbuffer disk_UUID_RTbuffer;
+
1465 RTbuffer tile_UUID_RTbuffer;
+
1466 RTbuffer voxel_UUID_RTbuffer;
+
1467 RTbuffer bbox_UUID_RTbuffer;
+
1469 RTvariable patch_UUID_RTvariable;
+
1470 RTvariable triangle_UUID_RTvariable;
+
1471 RTvariable disk_UUID_RTvariable;
+
1472 RTvariable tile_UUID_RTvariable;
+
1473 RTvariable voxel_UUID_RTvariable;
+
1474 RTvariable bbox_UUID_RTvariable;
+
1475
+
1477 RTbuffer objectID_RTbuffer;
+
1479 RTvariable objectID_RTvariable;
+
1480
+
1482 RTbuffer primitiveID_RTbuffer;
+
1484 RTvariable primitiveID_RTvariable;
+
1485
+
1487 RTbuffer twosided_flag_RTbuffer;
+
1489 RTvariable twosided_flag_RTvariable;
+
1490
+
1492 RTbuffer Rsky_RTbuffer;
+
1493
+
1494 //-- Patch Buffers --//
+
1495 RTbuffer patch_vertices_RTbuffer;
+
1496 RTvariable patch_vertices_RTvariable;
+
1497
+
1498 //-- Triangle Buffers --//
+
1499 RTbuffer triangle_vertices_RTbuffer;
+
1500 RTvariable triangle_vertices_RTvariable;
+
1501
+
1502 //-- Disk Buffers --//
+
1503 RTbuffer disk_centers_RTbuffer;
+
1504 RTvariable disk_centers_RTvariable;
+
1505 RTbuffer disk_radii_RTbuffer;
+
1506 RTvariable disk_radii_RTvariable;
+
1507 RTbuffer disk_normals_RTbuffer;
+
1508 RTvariable disk_normals_RTvariable;
+
1509
+
1510 //-- Tile Buffers --//
+
1511 RTbuffer tile_vertices_RTbuffer;
+
1512 RTvariable tile_vertices_RTvariable;
+
1513
+
1514 //-- Voxel Buffers --//
+
1515 RTbuffer voxel_vertices_RTbuffer;
+
1516 RTvariable voxel_vertices_RTvariable;
+
1517
+
1518 //-- Bounding Box Buffers --//
+
1519 RTbuffer bbox_vertices_RTbuffer;
+
1520 RTvariable bbox_vertices_RTvariable;
+
1521
+
1522 //-- Object Buffers --//
+
1523 RTbuffer object_subdivisions_RTbuffer;
+
1524 RTvariable object_subdivisions_RTvariable;
1525
-
1527 RTbuffer transform_matrix_RTbuffer;
-
1529 RTvariable transform_matrix_RTvariable;
-
1531 RTbuffer primitive_emission_RTbuffer;
-
1533 RTvariable primitive_emission_RTvariable;
-
1534
-
1536 RTbuffer radiation_in_RTbuffer;
-
1538 RTvariable radiation_in_RTvariable;
-
1540 RTbuffer radiation_out_top_RTbuffer;
-
1542 RTvariable radiation_out_top_RTvariable;
-
1544 RTbuffer radiation_out_bottom_RTbuffer;
-
1546 RTvariable radiation_out_bottom_RTvariable;
-
1548 RTbuffer scatter_buff_top_RTbuffer;
-
1550 RTvariable scatter_buff_top_RTvariable;
-
1552 RTbuffer scatter_buff_bottom_RTbuffer;
-
1554 RTvariable scatter_buff_bottom_RTvariable;
-
1555
-
1557 RTbuffer radiation_in_camera_RTbuffer;
-
1559 RTvariable radiation_in_camera_RTvariable;
-
1560
-
1562 RTbuffer scatter_buff_top_cam_RTbuffer;
-
1564 RTvariable scatter_buff_top_cam_RTvariable;
-
1566 RTbuffer scatter_buff_bottom_cam_RTbuffer;
-
1568 RTvariable scatter_buff_bottom_cam_RTvariable;
-
1569
-
1571 RTbuffer camera_pixel_label_RTbuffer;
-
1573 RTvariable camera_pixel_label_RTvariable;
-
1574
-
1576 RTbuffer camera_pixel_depth_RTbuffer;
-
1578 RTvariable camera_pixel_depth_RTvariable;
-
1579
-
1581 RTbuffer maskdata_RTbuffer;
-
1583 RTvariable maskdata_RTvariable;
-
1585 RTbuffer masksize_RTbuffer;
-
1587 RTvariable masksize_RTvariable;
-
1589 RTbuffer maskID_RTbuffer;
-
1591 RTvariable maskID_RTvariable;
-
1593 RTbuffer uvdata_RTbuffer;
-
1595 RTvariable uvdata_RTvariable;
-
1597 RTbuffer uvID_RTbuffer;
-
1599 RTvariable uvID_RTvariable;
-
1600
-
1601
-
1602 /* Ray Types */
+
1526 /* Output Buffers */
+
1527
+
1529 RTbuffer transform_matrix_RTbuffer;
+
1531 RTvariable transform_matrix_RTvariable;
+
1533 RTbuffer primitive_emission_RTbuffer;
+
1535 RTvariable primitive_emission_RTvariable;
+
1536
+
1538 RTbuffer radiation_in_RTbuffer;
+
1540 RTvariable radiation_in_RTvariable;
+
1542 RTbuffer radiation_out_top_RTbuffer;
+
1544 RTvariable radiation_out_top_RTvariable;
+
1546 RTbuffer radiation_out_bottom_RTbuffer;
+
1548 RTvariable radiation_out_bottom_RTvariable;
+
1550 RTbuffer scatter_buff_top_RTbuffer;
+
1552 RTvariable scatter_buff_top_RTvariable;
+
1554 RTbuffer scatter_buff_bottom_RTbuffer;
+
1556 RTvariable scatter_buff_bottom_RTvariable;
+
1557
+
1559 RTbuffer radiation_in_camera_RTbuffer;
+
1561 RTvariable radiation_in_camera_RTvariable;
+
1562
+
1564 RTbuffer scatter_buff_top_cam_RTbuffer;
+
1566 RTvariable scatter_buff_top_cam_RTvariable;
+
1568 RTbuffer scatter_buff_bottom_cam_RTbuffer;
+
1570 RTvariable scatter_buff_bottom_cam_RTvariable;
+
1571
+
1573 RTbuffer camera_pixel_label_RTbuffer;
+
1575 RTvariable camera_pixel_label_RTvariable;
+
1576
+
1578 RTbuffer camera_pixel_depth_RTbuffer;
+
1580 RTvariable camera_pixel_depth_RTvariable;
+
1581
+
1583 RTbuffer maskdata_RTbuffer;
+
1585 RTvariable maskdata_RTvariable;
+
1587 RTbuffer masksize_RTbuffer;
+
1589 RTvariable masksize_RTvariable;
+
1591 RTbuffer maskID_RTbuffer;
+
1593 RTvariable maskID_RTvariable;
+
1595 RTbuffer uvdata_RTbuffer;
+
1597 RTvariable uvdata_RTvariable;
+
1599 RTbuffer uvID_RTbuffer;
+
1601 RTvariable uvID_RTvariable;
+
1602
1603
-
1605 RTvariable direct_ray_type_RTvariable;
-
1607 RTvariable diffuse_ray_type_RTvariable;
-
1608
-
1609 //Handle to OptiX ray type for camera rays
-
1610 RTvariable camera_ray_type_RTvariable;
-
1611 //Handle to OptiX ray type for camera pixel labeling rays
-
1612 RTvariable pixel_label_ray_type_RTvariable;
-
1613
-
1615 enum RayType { RAYTYPE_DIRECT=0, RAYTYPE_DIFFUSE=1, RAYTYPE_CAMERA=2, RAYTYPE_PIXEL_LABEL=3 };
-
1616
-
1617 /* OptiX Geometry Structures */
-
1618 RTgeometry patch;
-
1619 RTgeometry triangle;
-
1620 RTgeometry disk;
-
1621 RTgeometry tile;
-
1622 RTgeometry voxel;
-
1623 RTgeometry bbox;
-
1624 RTmaterial patch_material;
-
1625 RTmaterial triangle_material;
-
1626 RTmaterial disk_material;
-
1627 RTmaterial tile_material;
-
1628 RTmaterial voxel_material;
-
1629 RTmaterial bbox_material;
-
1630
-
1631 RTgroup top_level_group;
-
1632 RTacceleration top_level_acceleration;
-
1633 RTvariable top_object;
-
1634 RTacceleration geometry_acceleration;
-
1635
-
1636
+
1604 /* Ray Types */
+
1605
+
1607 RTvariable direct_ray_type_RTvariable;
+
1609 RTvariable diffuse_ray_type_RTvariable;
+
1610
+
1611 //Handle to OptiX ray type for camera rays
+
1612 RTvariable camera_ray_type_RTvariable;
+
1613 //Handle to OptiX ray type for camera pixel labeling rays
+
1614 RTvariable pixel_label_ray_type_RTvariable;
+
1615
+
1617 enum RayType { RAYTYPE_DIRECT=0, RAYTYPE_DIFFUSE=1, RAYTYPE_CAMERA=2, RAYTYPE_PIXEL_LABEL=3 };
+
1618
+
1619 /* OptiX Geometry Structures */
+
1620 RTgeometry patch;
+
1621 RTgeometry triangle;
+
1622 RTgeometry disk;
+
1623 RTgeometry tile;
+
1624 RTgeometry voxel;
+
1625 RTgeometry bbox;
+
1626 RTmaterial patch_material;
+
1627 RTmaterial triangle_material;
+
1628 RTmaterial disk_material;
+
1629 RTmaterial tile_material;
+
1630 RTmaterial voxel_material;
+
1631 RTmaterial bbox_material;
+
1632
+
1633 RTgroup top_level_group;
+
1634 RTacceleration top_level_acceleration;
+
1635 RTvariable top_object;
+
1636 RTacceleration geometry_acceleration;
+
1637
1638
-
1641 bool isgeometryinitialized;
-
1642
-
1643 std::vector<bool> isbandpropertyinitialized;
+
1640
+
1643 bool isgeometryinitialized;
1644
-
1645 bool islightvisualizationenabled = false;
-
1646 bool iscameravisualizationenabled = false;
-
1647
-
1649 std::vector<std::string> output_prim_data;
-
1650
-
1651 std::vector<std::string> spectral_library_files;
+
1645 std::vector<bool> isbandpropertyinitialized;
+
1646
+
1647 bool islightvisualizationenabled = false;
+
1648 bool iscameravisualizationenabled = false;
+
1649
+
1651 std::vector<std::string> output_prim_data;
1652
-
1653};
-
+
1653 std::vector<std::string> spectral_library_files;
1654
-
1655void sutilHandleError(RTcontext context, RTresult code, const char* file, int line);
+
1655};
+
1656
-
1657void sutilReportError(const char* message);
1658
-
1659/* assumes current scope has Context variable named 'OptiX_Context' */
-
1660#define RT_CHECK_ERROR( func ) \
-
1661 do { \
-
1662 RTresult code = func; \
-
1663 if( code != RT_SUCCESS ) \
-
1664 sutilHandleError( OptiX_Context, code, __FILE__, __LINE__ ); \
-
1665 } while(0)
-
1666
-
1667#endif
+
1662bool validateOutputPath(std::ostringstream &output_directory);
+
1663
+
1664void sutilHandleError(RTcontext context, RTresult code, const char* file, int line);
+
1665
+
1666void sutilReportError(const char* message);
+
1667
+
1668/* assumes current scope has Context variable named 'OptiX_Context' */
+
1669#define RT_CHECK_ERROR( func ) \
+
1670 do { \
+
1671 RTresult code = func; \
+
1672 if( code != RT_SUCCESS ) \
+
1673 sutilHandleError( OptiX_Context, code, __FILE__, __LINE__ ); \
+
1674 } while(0)
+
1675
+
1676#endif
+
validateOutputPath
bool validateOutputPath(std::ostringstream &output_directory)
Validates the file path for output file writing by 1) making sure the directory string has a trailing...
Definition RadiationModel.cpp:5727
RadiationSourceType
RadiationSourceType
Possible types of radiation sources.
Definition RadiationModel.h:189
RadiationModel
Radiation transport model plugin.
Definition RadiationModel.h:277
RadiationModel::getCameraOrientation
helios::SphericalCoord getCameraOrientation(const std::string &camera_label) const
Get the orientation of the radiation camera based on a spherical coordinate.
Definition RadiationModel.cpp:1271
RadiationModel::setSourceSpectrumIntegral
void setSourceSpectrumIntegral(uint source_ID, float source_integral)
Set the integral of the source spectral flux distribution across all possible wavelengths (=∫Sdλ)
Definition RadiationModel.cpp:471
RadiationModel::deleteRadiationSource
void deleteRadiationSource(uint sourceID)
Delete an existing radiation source (any type)
Definition RadiationModel.cpp:461
-
RadiationModel::calculateGtheta
float calculateGtheta(helios::Context *context, helios::vec3 view_direction)
Calculate G(theta) (i.e., projected area fraction) for a group of primitives given a certain viewing ...
Definition RadiationModel.cpp:4824
+
RadiationModel::calculateGtheta
float calculateGtheta(helios::Context *context, helios::vec3 view_direction)
Calculate G(theta) (i.e., projected area fraction) for a group of primitives given a certain viewing ...
Definition RadiationModel.cpp:4820
RadiationModel::disableMessages
void disableMessages()
Disable/silence status messages.
Definition RadiationModel.cpp:54
RadiationModel::setCameraSpectralResponse
void setCameraSpectralResponse(const std::string &camera_label, const std::string &band_label, const std::string &global_data)
Set the spectral response of a camera band based on reference to global data. This function version u...
Definition RadiationModel.cpp:1199
RadiationModel::setSourceFlux
void setSourceFlux(uint source_ID, const std::string &band_label, float flux)
Set the flux of radiation source for this band.
Definition RadiationModel.cpp:508
@@ -1070,36 +1074,36 @@
RadiationModel::setDirectRayCount
void setDirectRayCount(const std::string &label, size_t N)
Sets variable directRayCount, the number of rays to be used in direct radiation model.
Definition RadiationModel.cpp:72
RadiationModel::selfTest
int selfTest()
Self-test.
Definition selfTest.cpp:20
RadiationModel::copyRadiationBand
void copyRadiationBand(const std::string &old_label, const std::string &new_label)
Copy a spectral radiation band based on a previously created band.
Definition RadiationModel.cpp:230
-
RadiationModel::writeCameraImageData
void writeCameraImageData(const std::string &camera, const std::string &band, const std::string &imagefile_base, const std::string &image_path="./", int frame=-1)
Write camera data for one band to an ASCII text file.
Definition RadiationModel.cpp:1422
-
RadiationModel::writeImageBoundingBoxes
void writeImageBoundingBoxes(const std::string &cameralabel, const std::string &primitive_data_label, uint object_class_ID, const std::string &imagefile_base, const std::string &image_path="./", bool append_label_file=false, int frame=-1)
Write bounding boxes based on primitive data labels (Ultralytic's YOLO format). Primitive data must h...
Definition RadiationModel.cpp:5380
+
RadiationModel::writeCameraImageData
void writeCameraImageData(const std::string &camera, const std::string &band, const std::string &imagefile_base, const std::string &image_path="./", int frame=-1)
Write camera data for one band to an ASCII text file.
Definition RadiationModel.cpp:1420
+
RadiationModel::writeImageBoundingBoxes
void writeImageBoundingBoxes(const std::string &cameralabel, const std::string &primitive_data_label, uint object_class_ID, const std::string &imagefile_base, const std::string &image_path="./", bool append_label_file=false, int frame=-1)
Write bounding boxes based on primitive data labels (Ultralytic's YOLO format). Primitive data must h...
Definition RadiationModel.cpp:5368
RadiationModel::enableLightModelVisualization
void enableLightModelVisualization()
Add a 3D model of the light source (rectangular, disk, and sphere) to the Context for visualization p...
Definition RadiationModel.cpp:665
-
RadiationModel::getTotalAbsorbedFlux
std::vector< float > getTotalAbsorbedFlux()
Get the total absorbed radiation flux summed over all bands for each primitive.
Definition RadiationModel.cpp:3725
-
RadiationModel::writeNormCameraImage
void writeNormCameraImage(const std::string &camera, const std::vector< std::string > &bands, const std::string &imagefile_base, const std::string &image_path="./", int frame=-1)
Write normalized camera data (maximum value is 1) for one or more bands to a JPEG image.
Definition RadiationModel.cpp:1388
-
RadiationModel::writeNormDepthImage
void writeNormDepthImage(const std::string &cameralabel, const std::string &imagefile_base, float max_depth, const std::string &image_path="./", int frame=-1)
Write depth image file, with grayscale normalized to the minimum and maximum depth values.
Definition RadiationModel.cpp:5311
+
RadiationModel::getTotalAbsorbedFlux
std::vector< float > getTotalAbsorbedFlux()
Get the total absorbed radiation flux summed over all bands for each primitive.
Definition RadiationModel.cpp:3721
+
RadiationModel::writeNormCameraImage
void writeNormCameraImage(const std::string &camera, const std::vector< std::string > &bands, const std::string &imagefile_base, const std::string &image_path="./", int frame=-1)
Write normalized camera data (maximum value is 1) for one or more bands to a JPEG image.
Definition RadiationModel.cpp:1386
+
RadiationModel::writeNormDepthImage
void writeNormDepthImage(const std::string &cameralabel, const std::string &imagefile_base, float max_depth, const std::string &image_path="./", int frame=-1)
Write depth image file, with grayscale normalized to the minimum and maximum depth values.
Definition RadiationModel.cpp:5301
RadiationModel::getCameraPosition
helios::vec3 getCameraPosition(const std::string &camera_label) const
Get the position of the radiation camera.
Definition RadiationModel.cpp:1225
RadiationModel::setMinScatterEnergy
void setMinScatterEnergy(const std::string &label, uint energy)
Set the energy threshold used to terminate scattering iterations. Scattering iterations are terminate...
Definition RadiationModel.cpp:1130
RadiationModel::getCameraLookat
helios::vec3 getCameraLookat(const std::string &camera_label) const
Get the position the radiation camera is pointed toward (used to calculate camera orientation)
Definition RadiationModel.cpp:1248
RadiationModel::disableCameraModelVisualization
void disableCameraModelVisualization()
Remove the 3D model of the camera from the Context.
Definition RadiationModel.cpp:692
RadiationModel::setDiffuseSpectrumIntegral
void setDiffuseSpectrumIntegral(float spectrum_integral)
Set the integral of the diffuse spectral flux distribution across all possible wavelengths FOR ALL EX...
Definition RadiationModel.cpp:132
RadiationModel::setScatteringDepth
void setScatteringDepth(const std::string &label, uint depth)
Set the number of scattering iterations for a certain band.
Definition RadiationModel.cpp:1121
-
RadiationModel::runRadiationImaging
void runRadiationImaging(const std::string &cameralabel, const std::vector< std::string > &sourcelabels, const std::vector< std::string > &bandlabels, const std::vector< std::string > &cameraresponselabels, helios::vec2 wavelengthrange, float fluxscale=1, float diffusefactor=0.0005, uint scatteringdepth=4)
Run radiation imaging simulation.
Definition RadiationModel.cpp:4970
-
RadiationModel::setPadValue
void setPadValue(const std::string &cameralabel, const std::vector< std::string > &bandlabels, const std::vector< float > &padvalues)
Set padding value for pixels do not have valid values.
Definition RadiationModel.cpp:5603
+
RadiationModel::runRadiationImaging
void runRadiationImaging(const std::string &cameralabel, const std::vector< std::string > &sourcelabels, const std::vector< std::string > &bandlabels, const std::vector< std::string > &cameraresponselabels, helios::vec2 wavelengthrange, float fluxscale=1, float diffusefactor=0.0005, uint scatteringdepth=4)
Run radiation imaging simulation.
Definition RadiationModel.cpp:4966
+
RadiationModel::setPadValue
void setPadValue(const std::string &cameralabel, const std::vector< std::string > &bandlabels, const std::vector< float > &padvalues)
Set padding value for pixels do not have valid values.
Definition RadiationModel.cpp:5587
RadiationModel::disableEmission
void disableEmission(const std::string &label)
Disable emission calculations for all primitives in this band.
Definition RadiationModel.cpp:268
-
RadiationModel::writePrimitiveDataLabelMap
void writePrimitiveDataLabelMap(const std::string &cameralabel, const std::string &primitive_data_label, const std::string &imagefile_base, const std::string &image_path="./", int frame=-1, float padvalue=NAN)
Write image pixel labels to text file based on primitive data. Primitive data must have type 'float',...
Definition RadiationModel.cpp:5078
+
RadiationModel::writePrimitiveDataLabelMap
void writePrimitiveDataLabelMap(const std::string &cameralabel, const std::string &primitive_data_label, const std::string &imagefile_base, const std::string &image_path="./", int frame=-1, float padvalue=NAN)
Write image pixel labels to text file based on primitive data. Primitive data must have type 'float',...
Definition RadiationModel.cpp:5074
RadiationModel::setSourceSpectrum
void setSourceSpectrum(uint source_ID, const std::vector< helios::vec2 > &spectrum)
Set the spectral distribution of a radiation source according to a vector of wavelength-intensity pai...
Definition RadiationModel.cpp:556
RadiationModel::enableEmission
void enableEmission(const std::string &label)
Enable emission calculations for all primitives in this band.
Definition RadiationModel.cpp:278
-
RadiationModel::runBand
void runBand(const std::string &label)
Run the simulation for a single radiative band.
Definition RadiationModel.cpp:3102
+
RadiationModel::runBand
void runBand(const std::string &label)
Run the simulation for a single radiative band.
Definition RadiationModel.cpp:3098
RadiationModel::setCameraLookat
void setCameraLookat(const std::string &camera_label, const helios::vec3 &lookat)
Set the position the radiation camera is pointed toward (used to calculate camera orientation)
Definition RadiationModel.cpp:1235
RadiationModel::addSunSphereRadiationSource
uint addSunSphereRadiationSource()
Add a sphere radiation source that models the sun assuming the default direction of (0,...
Definition RadiationModel.cpp:362
RadiationModel::addDiskRadiationSource
uint addDiskRadiationSource(const helios::vec3 &position, float radius, const helios::vec3 &rotation)
Add planar circular radiation source.
Definition RadiationModel.cpp:430
RadiationModel::doesBandExist
bool doesBandExist(const std::string &label) const
Check if a radiation band exists based on its label.
Definition RadiationModel.cpp:260
-
RadiationModel::getSkyEnergy
float getSkyEnergy()
Get the radiative energy lost to the sky (surroundings)
Definition RadiationModel.cpp:3713
+
RadiationModel::getSkyEnergy
float getSkyEnergy()
Get the radiative energy lost to the sky (surroundings)
Definition RadiationModel.cpp:3709
RadiationModel::getSourceFlux
float getSourceFlux(uint source_ID, const std::string &band_label) const
Get the flux of radiation source for this band.
Definition RadiationModel.cpp:530
RadiationModel::setCameraPosition
void setCameraPosition(const std::string &camera_label, const helios::vec3 &position)
Set the position of the radiation camera.
Definition RadiationModel.cpp:1210
RadiationModel::setSourcePosition
void setSourcePosition(uint source_ID, const helios::vec3 &position)
Set the position/direction of radiation source based on a Cartesian vector.
Definition RadiationModel.cpp:1090
RadiationModel::writeCameraImage
void writeCameraImage(const std::string &camera, const std::vector< std::string > &bands, const std::string &imagefile_base, const std::string &image_path="./", int frame=-1, float flux_to_pixel_conversion=1.f)
Write camera data for one or more bands to a JPEG image.
Definition RadiationModel.cpp:1304
RadiationModel::setDiffuseRadiationFlux
void setDiffuseRadiationFlux(const std::string &label, float flux)
Diffuse (ambient) radiation flux.
Definition RadiationModel.cpp:86
-
RadiationModel::calibrateCamera
void calibrateCamera(const std::string &orginalcameralabel, const std::vector< std::string > &sourcelabels, const std::vector< std::string > &cameraresponselabels, const std::vector< std::string > &bandlabels, const float scalefactor, const std::vector< std::vector< float > > &truevalues, const std::string &calibratedmark)
Calibrate camera.
Definition RadiationModel.cpp:5625
+
RadiationModel::calibrateCamera
void calibrateCamera(const std::string &orginalcameralabel, const std::vector< std::string > &sourcelabels, const std::vector< std::string > &cameraresponselabels, const std::vector< std::string > &bandlabels, const float scalefactor, const std::vector< std::vector< float > > &truevalues, const std::string &calibratedmark)
Calibrate camera.
Definition RadiationModel.cpp:5609
RadiationModel::setDiffuseRayCount
void setDiffuseRayCount(const std::string &label, size_t N)
Sets variable diffuseRayCount, the number of rays to be used in diffuse (ambient) radiation model.
Definition RadiationModel.cpp:79
RadiationModel::getSourcePosition
helios::vec3 getSourcePosition(uint source_ID) const
Get the position/direction of radiation source.
Definition RadiationModel.cpp:1114
RadiationModel::addRectangleRadiationSource
uint addRectangleRadiationSource(const helios::vec3 &position, const helios::vec2 &size, const helios::vec3 &rotation)
Add planar rectangular radiation source.
Definition RadiationModel.cpp:400
@@ -1107,25 +1111,25 @@
RadiationModel::disableLightModelVisualization
void disableLightModelVisualization()
Remove the 3D model of the light source from the Context.
Definition RadiationModel.cpp:675
RadiationModel::scaleSpectrumRandomly
void scaleSpectrumRandomly(const std::string &existing_global_data_label, const std::string &new_global_data_label, float minimum_scale_factor, float maximum_scale_factor) const
Scale an entire spectrum by a random factor following a uniform distribution.
Definition RadiationModel.cpp:988
RadiationModel::optionalOutputPrimitiveData
void optionalOutputPrimitiveData(const char *label)
Add optional output primitive data values to the Context.
Definition RadiationModel.cpp:62
-
RadiationModel::writeImageBoundingBoxes_ObjectData
void writeImageBoundingBoxes_ObjectData(const std::string &cameralabel, const std::string &object_data_label, uint object_class_ID, const std::string &imagefile_base, const std::string &image_path="./", bool append_label_file=false, int frame=-1)
Write bounding boxes based on object data labels (Ultralytic's YOLO format). Object data must have ty...
Definition RadiationModel.cpp:5487
+
RadiationModel::writeImageBoundingBoxes_ObjectData
void writeImageBoundingBoxes_ObjectData(const std::string &cameralabel, const std::string &object_data_label, uint object_class_ID, const std::string &imagefile_base, const std::string &image_path="./", bool append_label_file=false, int frame=-1)
Write bounding boxes based on object data labels (Ultralytic's YOLO format). Object data must have ty...
Definition RadiationModel.cpp:5473
RadiationModel::setDiffuseRadiationExtinctionCoeff
void setDiffuseRadiationExtinctionCoeff(const std::string &label, float K, const helios::vec3 &peak_dir)
Extinction coefficient of diffuse ambient radiation.
Definition RadiationModel.cpp:97
-
RadiationModel::updateGeometry
void updateGeometry()
Adds all geometric primitives from the Context to OptiX.
Definition RadiationModel.cpp:1970
+
RadiationModel::updateGeometry
void updateGeometry()
Adds all geometric primitives from the Context to OptiX.
Definition RadiationModel.cpp:1966
RadiationModel::RadiationModel
RadiationModel(helios::Context *context)
Default constructor.
Definition RadiationModel.cpp:20
RadiationModel::addRadiationBand
void addRadiationBand(const std::string &label)
Add a spectral radiation band to the model.
Definition RadiationModel.cpp:183
RadiationModel::enableCameraModelVisualization
void enableCameraModelVisualization()
Add a 3D model of the camera to the Context for visualization purposes.
Definition RadiationModel.cpp:682
-
RadiationModel::writeDepthImageData
void writeDepthImageData(const std::string &cameralabel, const std::string &imagefile_base, const std::string &image_path="./", int frame=-1)
Write depth image data to text file.
Definition RadiationModel.cpp:5257
-
RadiationModel::getCameraResponseScale
float getCameraResponseScale(const std::string &orginalcameralabel, const std::vector< std::string > &cameraresponselabels, const std::vector< std::string > &bandlabels, const std::vector< std::string > &sourcelabels, helios::vec2 &wavelengthrange, const std::vector< std::vector< float > > &truevalues)
Get the scale factor of the camera response for a given camera.
Definition RadiationModel.cpp:5055
+
RadiationModel::writeDepthImageData
void writeDepthImageData(const std::string &cameralabel, const std::string &imagefile_base, const std::string &image_path="./", int frame=-1)
Write depth image data to text file.
Definition RadiationModel.cpp:5249
+
RadiationModel::getCameraResponseScale
float getCameraResponseScale(const std::string &orginalcameralabel, const std::vector< std::string > &cameraresponselabels, const std::vector< std::string > &bandlabels, const std::vector< std::string > &sourcelabels, helios::vec2 &wavelengthrange, const std::vector< std::vector< float > > &truevalues)
Get the scale factor of the camera response for a given camera.
Definition RadiationModel.cpp:5051
RadiationModel::addCollimatedRadiationSource
uint addCollimatedRadiationSource()
Add an external source of collimated radiation (i.e., source at infinite distance with parallel rays)...
Definition RadiationModel.cpp:288
RadiationModel::~RadiationModel
~RadiationModel()
Destructor.
Definition RadiationModel.cpp:50
RadiationModel::addRadiationCamera
void addRadiationCamera(const std::string &camera_label, const std::vector< std::string > &band_label, const helios::vec3 &position, const helios::vec3 &lookat, const CameraProperties &camera_properties, uint antialiasing_samples)
Add a radiation camera sensor.
Definition RadiationModel.cpp:1162
RadiationModel::setDiffuseSpectrum
void setDiffuseSpectrum(const std::string &spectrum_label)
Set the spectral distribution of diffuse ambient radiation FOR ALL BANDS based on global data of wave...
Definition RadiationModel.cpp:607
RadiationModel::getDiffuseFlux
float getDiffuseFlux(const std::string &band_label) const
Get the diffuse flux for a given band.
Definition RadiationModel.cpp:643
-
RadiationModel::updateCameraResponse
void updateCameraResponse(const std::string &orginalcameralabel, const std::vector< std::string > &sourcelabels_raw, const std::vector< std::string > &cameraresponselabels, helios::vec2 &wavelengthrange, const std::vector< std::vector< float > > &truevalues, const std::string &calibratedmark)
Update the camera response for a given camera based on color board.
Definition RadiationModel.cpp:4853
+
RadiationModel::updateCameraResponse
void updateCameraResponse(const std::string &orginalcameralabel, const std::vector< std::string > &sourcelabels_raw, const std::vector< std::string > &cameraresponselabels, helios::vec2 &wavelengthrange, const std::vector< std::vector< float > > &truevalues, const std::string &calibratedmark)
Update the camera response for a given camera based on color board.
Definition RadiationModel.cpp:4849
RadiationModel::integrateSourceSpectrum
float integrateSourceSpectrum(uint source_ID, float wavelength1, float wavelength2) const
Integrate a source spectral distribution between two wavelength bounds.
Definition RadiationModel.cpp:952
-
RadiationModel::writeObjectDataLabelMap
void writeObjectDataLabelMap(const std::string &cameralabel, const std::string &object_data_label, const std::string &imagefile_base, const std::string &image_path="./", int frame=-1, float padvalue=NAN)
Write image pixel labels to text file based on object data. Object data must have type 'float',...
Definition RadiationModel.cpp:5167
+
RadiationModel::writeObjectDataLabelMap
void writeObjectDataLabelMap(const std::string &cameralabel, const std::string &object_data_label, const std::string &imagefile_base, const std::string &image_path="./", int frame=-1, float padvalue=NAN)
Write image pixel labels to text file based on object data. Object data must have type 'float',...
Definition RadiationModel.cpp:5161
helios::Context
Stores the state associated with simulation.
Definition Context.h:1882
helios::make_int2
int2 make_int2(int x, int y)
Make an int2 vector from two ints.
Definition helios_vector_types.h:99
-
helios::make_vec2
vec2 make_vec2(float x, float y)
Make a vec2 from two floats.
Definition helios_vector_types.h:432
+
helios::make_vec2
vec2 make_vec2(float x, float y)
Make a vec2 from two floats.
Definition helios_vector_types.h:433
CameraCalibration
Camera calibration structure used for camera calibration tasks.
Definition CameraCalibration.h:21
CameraProperties
Properties defining a radiation camera.
Definition RadiationModel.h:31
CameraProperties::camera_resolution
helios::int2 camera_resolution
Camera sensor resolution (number of pixels) in the horizontal (.x) and vertical (....
Definition RadiationModel.h:38
@@ -1163,10 +1167,10 @@
RadiationSource::source_type
RadiationSourceType source_type
Types of all radiation sources.
Definition RadiationModel.h:269
RadiationSource::RadiationSource
RadiationSource(const helios::vec3 &position, float width, const helios::vec3 &rotation)
Constructor for disk radiation source.
Definition RadiationModel.h:238
RadiationSource::source_fluxes
std::map< std::string, float > source_fluxes
Fluxes of radiation source for all bands.
Definition RadiationModel.h:272
-
helios::SphericalCoord
Vector of spherical coordinates (elevation,azimuth)
Definition helios_vector_types.h:1468
+
helios::SphericalCoord
Vector of spherical coordinates (elevation,azimuth)
Definition helios_vector_types.h:1471
helios::int2
Vector of two elements of type 'int'.
Definition helios_vector_types.h:44
helios::vec2
Vector of two elements of type 'float'.
Definition helios_vector_types.h:346
-
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:502
+
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:503
diff --git a/doc/html/_ray_tracing_8cu_8h.html b/doc/html/_ray_tracing_8cu_8h.html index dc5adbdf3..37ce6b556 100644 --- a/doc/html/_ray_tracing_8cu_8h.html +++ b/doc/html/_ray_tracing_8cu_8h.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
diff --git a/doc/html/_ray_tracing_8cu_8h_source.html b/doc/html/_ray_tracing_8cu_8h_source.html index 96d8d6895..97619bad7 100644 --- a/doc/html/_ray_tracing_8cu_8h_source.html +++ b/doc/html/_ray_tracing_8cu_8h_source.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
diff --git a/doc/html/_solar_position_8cpp.html b/doc/html/_solar_position_8cpp.html index 0f7c8688e..60fa1611e 100644 --- a/doc/html/_solar_position_8cpp.html +++ b/doc/html/_solar_position_8cpp.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
diff --git a/doc/html/_solar_position_8cpp_source.html b/doc/html/_solar_position_8cpp_source.html index 52e037668..1bac29231 100644 --- a/doc/html/_solar_position_8cpp_source.html +++ b/doc/html/_solar_position_8cpp_source.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
@@ -612,32 +612,32 @@
SolarPosition::getSunDirectionVector
helios::vec3 getSunDirectionVector() const
Get a unit vector pointing toward the sun for the current location. The sun angle is computed based o...
Definition SolarPosition.cpp:162
SolarPosition::getDiffuseFraction
float getDiffuseFraction(float pressure_Pa, float temperature_K, float humidity_rel, float turbidity) const
Get the fraction of solar radiation flux that is diffuse.
Definition SolarPosition.cpp:215
helios::Context
Stores the state associated with simulation.
Definition Context.h:1882
-
helios::Context::getJulianDate
int getJulianDate() const
Get simulation date by Julian day.
Definition Context.cpp:1135
-
helios::Context::getTime
helios::Time getTime() const
Get the simulation time.
Definition Context.cpp:1169
-
helios::Context::getDate
helios::Date getDate() const
Get simulation date.
Definition Context.cpp:1102
-
helios::fzero
float fzero(float(*function)(float value, std::vector< float > &variables, const void *parameters), std::vector< float > &variables, const void *parameters, float init_guess, float err_tol=0.0001f, int max_iterations=100)
Use Newton-Raphson method to find the zero of a function.
Definition global.cpp:2893
+
helios::Context::getJulianDate
int getJulianDate() const
Get simulation date by Julian day.
Definition Context.cpp:1130
+
helios::Context::getTime
helios::Time getTime() const
Get the simulation time.
Definition Context.cpp:1164
+
helios::Context::getDate
helios::Date getDate() const
Get simulation date.
Definition Context.cpp:1097
+
helios::fzero
float fzero(float(*function)(float value, std::vector< float > &variables, const void *parameters), std::vector< float > &variables, const void *parameters, float init_guess, float err_tol=0.0001f, int max_iterations=100)
Use Newton-Raphson method to find the zero of a function.
Definition global.cpp:2895
helios::helios_runtime_error
void helios_runtime_error(const std::string &error_message)
Function to throw a runtime error.
Definition global.cpp:29
helios::sphere2cart
vec3 sphere2cart(const SphericalCoord &Spherical)
Convert Spherical coordinates to Cartesian coordinates.
Definition global.cpp:617
helios::acos_safe
float acos_safe(float x)
arccosine function to handle cases when round-off errors cause an argument <-1 or >1,...
Definition global.cpp:241
helios::asin_safe
float asin_safe(float x)
arcsine function to handle cases when round-off errors cause an argument <-1 or >1,...
Definition global.cpp:247
-
helios::Context::queryTimeseriesTime
Time queryTimeseriesTime(const char *label, uint index) const
Get the time associated with a timeseries data point.
Definition Context.cpp:1953
-
helios::Context::getTimeseriesLength
uint getTimeseriesLength(const char *label) const
Get the length of timeseries data.
Definition Context.cpp:2009
-
helios::Context::queryTimeseriesData
float queryTimeseriesData(const char *label, const Date &date, const Time &time) const
Get a timeseries data point by specifying a date and time vector.
Definition Context.cpp:1889
-
helios::Context::doesTimeseriesVariableExist
bool doesTimeseriesVariableExist(const char *label) const
Query whether a timeseries variable exists.
Definition Context.cpp:2021
-
helios::Context::queryTimeseriesDate
Date queryTimeseriesDate(const char *label, uint index) const
Get the date associated with a timeseries data point.
Definition Context.cpp:1989
-
helios::make_Time
Time make_Time(int hour, int minute)
Make a Time vector.
Definition helios_vector_types.h:1424
-
helios::make_SphericalCoord
SphericalCoord make_SphericalCoord(float elevation_radians, float azimuth_radians)
Make a SphericalCoord by specifying elevation and azimuth.
Definition helios_vector_types.h:1536
- +
helios::Context::queryTimeseriesTime
Time queryTimeseriesTime(const char *label, uint index) const
Get the time associated with a timeseries data point.
Definition Context.cpp:1948
+
helios::Context::getTimeseriesLength
uint getTimeseriesLength(const char *label) const
Get the length of timeseries data.
Definition Context.cpp:2004
+
helios::Context::queryTimeseriesData
float queryTimeseriesData(const char *label, const Date &date, const Time &time) const
Get a timeseries data point by specifying a date and time vector.
Definition Context.cpp:1884
+
helios::Context::doesTimeseriesVariableExist
bool doesTimeseriesVariableExist(const char *label) const
Query whether a timeseries variable exists.
Definition Context.cpp:2016
+
helios::Context::queryTimeseriesDate
Date queryTimeseriesDate(const char *label, uint index) const
Get the date associated with a timeseries data point.
Definition Context.cpp:1984
+
helios::make_Time
Time make_Time(int hour, int minute)
Make a Time vector.
Definition helios_vector_types.h:1427
+
helios::make_SphericalCoord
SphericalCoord make_SphericalCoord(float elevation_radians, float azimuth_radians)
Make a SphericalCoord by specifying elevation and azimuth.
Definition helios_vector_types.h:1539
+
helios::Date::JulianDay
int JulianDay() const
Convert to Julian day.
Definition global.cpp:186
-
helios::SphericalCoord
Vector of spherical coordinates (elevation,azimuth)
Definition helios_vector_types.h:1468
-
helios::SphericalCoord::zenith
const float & zenith
Zenithal angle (radians)
Definition helios_vector_types.h:1487
-
helios::SphericalCoord::elevation
const float & elevation
Elevation angle (radians)
Definition helios_vector_types.h:1482
-
helios::SphericalCoord::azimuth
float azimuth
Azimuthal angle (radians)
Definition helios_vector_types.h:1489
- -
helios::Time::hour
int hour
Hour of day.
Definition helios_vector_types.h:1356
-
helios::Time::minute
int minute
Minute of hour.
Definition helios_vector_types.h:1354
+
helios::SphericalCoord
Vector of spherical coordinates (elevation,azimuth)
Definition helios_vector_types.h:1471
+
helios::SphericalCoord::zenith
const float & zenith
Zenithal angle (radians)
Definition helios_vector_types.h:1490
+
helios::SphericalCoord::elevation
const float & elevation
Elevation angle (radians)
Definition helios_vector_types.h:1485
+
helios::SphericalCoord::azimuth
float azimuth
Azimuthal angle (radians)
Definition helios_vector_types.h:1492
+ +
helios::Time::hour
int hour
Hour of day.
Definition helios_vector_types.h:1359
+
helios::Time::minute
int minute
Minute of hour.
Definition helios_vector_types.h:1357
helios::vec2
Vector of two elements of type 'float'.
Definition helios_vector_types.h:346
-
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:502
+
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:503
diff --git a/doc/html/_solar_position_8h.html b/doc/html/_solar_position_8h.html index 20d2b923c..b889ae232 100644 --- a/doc/html/_solar_position_8h.html +++ b/doc/html/_solar_position_8h.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
diff --git a/doc/html/_solar_position_8h_source.html b/doc/html/_solar_position_8h_source.html index 27460d84c..69dead0da 100644 --- a/doc/html/_solar_position_8h_source.html +++ b/doc/html/_solar_position_8h_source.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
@@ -209,10 +209,10 @@
SolarPosition::getSunDirectionVector
helios::vec3 getSunDirectionVector() const
Get a unit vector pointing toward the sun for the current location. The sun angle is computed based o...
Definition SolarPosition.cpp:162
SolarPosition::getDiffuseFraction
float getDiffuseFraction(float pressure_Pa, float temperature_K, float humidity_rel, float turbidity) const
Get the fraction of solar radiation flux that is diffuse.
Definition SolarPosition.cpp:215
helios::Context
Stores the state associated with simulation.
Definition Context.h:1882
- -
helios::SphericalCoord
Vector of spherical coordinates (elevation,azimuth)
Definition helios_vector_types.h:1468
- -
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:502
+ +
helios::SphericalCoord
Vector of spherical coordinates (elevation,azimuth)
Definition helios_vector_types.h:1471
+ +
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:503
diff --git a/doc/html/_solar_position_doc.html b/doc/html/_solar_position_doc.html index 1ac5d847d..da4ea0927 100644 --- a/doc/html/_solar_position_doc.html +++ b/doc/html/_solar_position_doc.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
diff --git a/doc/html/_stomatal_conductance_model_8cpp.html b/doc/html/_stomatal_conductance_model_8cpp.html index 66fefa59c..b51c1018b 100644 --- a/doc/html/_stomatal_conductance_model_8cpp.html +++ b/doc/html/_stomatal_conductance_model_8cpp.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
diff --git a/doc/html/_stomatal_conductance_model_8cpp_source.html b/doc/html/_stomatal_conductance_model_8cpp_source.html index 00afa95d3..ab603068f 100644 --- a/doc/html/_stomatal_conductance_model_8cpp_source.html +++ b/doc/html/_stomatal_conductance_model_8cpp_source.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
@@ -298,7 +298,7 @@
186
187void StomatalConductanceModel::setBMFCoefficientsFromLibrary(const std::string &species_name) {
-
188 BMFcoefficients coeffs;
+
188 BMFcoefficients coeffs = getBMFCoefficientsFromLibrary(species_name);
189 BMFcoeffs = coeffs;
190 BMFmodel_coefficients.clear();
191 model = "BMF";
@@ -1053,14 +1053,14 @@
helios::Context
Stores the state associated with simulation.
Definition Context.h:1882
helios::Context::getPrimitiveData
void getPrimitiveData(uint UUID, const char *label, int &data) const
Get data associated with a primitive element.
Definition Context_data.cpp:1001
helios::Context::doesPrimitiveDataExist
bool doesPrimitiveDataExist(uint UUID, const char *label) const
Check if primitive data 'label' exists.
Definition Context_data.cpp:1169
-
helios::Context::getAllUUIDs
std::vector< uint > getAllUUIDs() const
Get all primitive UUIDs currently in the Context.
Definition Context.cpp:1758
+
helios::Context::getAllUUIDs
std::vector< uint > getAllUUIDs() const
Get all primitive UUIDs currently in the Context.
Definition Context.cpp:1753
helios::Context::getPrimitiveDataType
HeliosDataType getPrimitiveDataType(uint UUID, const char *label) const
Get the Helios data type of primitive data.
Definition Context_data.cpp:1155
helios::Context::setPrimitiveData
void setPrimitiveData(const uint &UUID, const char *label, const int &data)
Add data value (int) associated with a primitive element.
Definition Context_data.cpp:655
-
helios::Context::doesPrimitiveExist
bool doesPrimitiveExist(uint UUID) const
Check if primitive exists for a given UUID.
Definition Context.cpp:1654
-
helios::fzero
float fzero(float(*function)(float value, std::vector< float > &variables, const void *parameters), std::vector< float > &variables, const void *parameters, float init_guess, float err_tol=0.0001f, int max_iterations=100)
Use Newton-Raphson method to find the zero of a function.
Definition global.cpp:2893
+
helios::Context::doesPrimitiveExist
bool doesPrimitiveExist(uint UUID) const
Check if primitive exists for a given UUID.
Definition Context.cpp:1649
+
helios::fzero
float fzero(float(*function)(float value, std::vector< float > &variables, const void *parameters), std::vector< float > &variables, const void *parameters, float init_guess, float err_tol=0.0001f, int max_iterations=100)
Use Newton-Raphson method to find the zero of a function.
Definition global.cpp:2895
helios::max
float max(const std::vector< float > &vect)
Maximum value of a vector of floats.
Definition global.cpp:1064
-
helios::Context::addPatch
uint addPatch()
Add new default Patch geometric primitive, which is centered at the origin (0,0,0),...
Definition Context.cpp:1207
-
helios::make_vec2
vec2 make_vec2(float x, float y)
Make a vec2 from two floats.
Definition helios_vector_types.h:432
+
helios::Context::addPatch
uint addPatch()
Add new default Patch geometric primitive, which is centered at the origin (0,0,0),...
Definition Context.cpp:1202
+
helios::make_vec2
vec2 make_vec2(float x, float y)
Make a vec2 from two floats.
Definition helios_vector_types.h:433
BBLcoefficients
Coefficients for Ball, Berry, Leuning (Leuning 1990, 1995) stomatal conductance model.
Definition StomatalConductanceModel.h:35
BBcoefficients
Coefficients for simplified Bailey stomatal conductance model.
Definition StomatalConductanceModel.h:85
BMFcoefficients
Coefficients for simplified Buckley, Mott, & Farquhar stomatal conductance model.
Definition StomatalConductanceModel.h:63
diff --git a/doc/html/_stomatal_conductance_model_8h.html b/doc/html/_stomatal_conductance_model_8h.html index 029f97f4c..a76a83392 100644 --- a/doc/html/_stomatal_conductance_model_8h.html +++ b/doc/html/_stomatal_conductance_model_8h.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
diff --git a/doc/html/_stomatal_conductance_model_8h_source.html b/doc/html/_stomatal_conductance_model_8h_source.html index d823dcdba..58299a66a 100644 --- a/doc/html/_stomatal_conductance_model_8h_source.html +++ b/doc/html/_stomatal_conductance_model_8h_source.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
diff --git a/doc/html/_stomatal_doc.html b/doc/html/_stomatal_doc.html index 72c96f89c..5c2283baf 100644 --- a/doc/html/_stomatal_doc.html +++ b/doc/html/_stomatal_doc.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
diff --git a/doc/html/_synthetic_annotation_8cpp.html b/doc/html/_synthetic_annotation_8cpp.html index 6942ae933..96bdc6807 100644 --- a/doc/html/_synthetic_annotation_8cpp.html +++ b/doc/html/_synthetic_annotation_8cpp.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
diff --git a/doc/html/_synthetic_annotation_8cpp_source.html b/doc/html/_synthetic_annotation_8cpp_source.html index 239888ed0..0762b479d 100644 --- a/doc/html/_synthetic_annotation_8cpp_source.html +++ b/doc/html/_synthetic_annotation_8cpp_source.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
@@ -377,528 +377,527 @@
268 odir += '/';
269 }
270
-
271 //check that output directory exists, if not create it
-
272 std::string createdir = "mkdir -p ";
-
273 createdir += odir;
-
274 int dir = system(createdir.c_str());
-
275 if (dir < 0) {
-
276 helios_runtime_error("ERROR (SyntheticAnnotation::render): output directory " + std::string(outputdir) + " could not be created. Exiting...");
-
277 }
-
278 //create sub-directory structure for each view
-
279 //std::string viewdir;
-
280 for( int d=0; d<camera_position.size(); d++ ){
-
281 std::stringstream viewdir;
-
282 viewdir << createdir << "view" << std::setfill('0') << std::setw(5) << d << "/";
-
283 std::cout << "viewdir: " << viewdir.str() << std::endl;
-
284 //std::snprintf(viewdir,createdir.size()+24,"%sview%05d/",createdir.c_str(),d);
-
285 int dir = system( viewdir.str().c_str() );
-
286 if (dir < 0) {
-
287 helios_runtime_error("ERROR (SyntheticAnnotation::render): view sub-directory could not be created. Exiting...");
-
288 }
-
289 }
-
290
-
291 uint framebufferW, framebufferH;
-
292 std::stringstream outfile;
-
293
-
294 //------ RGB rendering with no labels --------//
-
295
-
296 if (printmessages) {
-
297 std::cout << "Rendering RGB image containing " << UUIDs_all.size() / 1000.f << "K primitives..." << std::flush;
-
298 }
-
299
-
300 Visualizer vis_RGB(window_width, window_height, 8, false);
-
301 vis_RGB.disableMessages();
-
302
-
303 vis_RGB.getFramebufferSize(framebufferW, framebufferH);
-
304
-
305 vis_RGB.buildContextGeometry(context);
-
306 vis_RGB.hideWatermark();
-
307 vis_RGB.setBackgroundColor(background_color);
-
308 vis_RGB.addSkyDomeByCenter( 20, make_vec3(0,0,0), 30, "plugins/visualizer/textures/SkyDome_clouds.jpg" );
-
309 vis_RGB.setLightDirection(sphere2cart(make_SphericalCoord(30 * M_PI / 180.f, 205 * M_PI / 180.f)));
-
310 vis_RGB.setLightingModel(Visualizer::LIGHTING_PHONG_SHADOWED);
-
311
-
312 //todo: need to add option to tell which sky dome image file to use
-
313 //vis_RGB.addSkyDomeByCenter( 50, make_vec3(0,0,0), 30, "plugins/visualizer/textures/SkyDome_clouds.jpg" );
-
314
-
315 for( int view=0; view<camera_position.size(); view++ ) {
-
316
-
317 vis_RGB.setCameraPosition(camera_position.at(view), camera_lookat.at(view));
-
318
-
319 vis_RGB.plotUpdate( true );
-
320
-
321 wait(5);
-
322
-
323 outfile.clear();
-
324 outfile.str("");
-
325 outfile << odir << "view" << std::setfill('0') << std::setw(5) << view << "/RGB_rendering.jpeg";
-
326 //std::snprintf(outfile, odir.size()+48, "%sview%05d/RGB_rendering.jpeg", odir.c_str(),view);
-
327 vis_RGB.printWindow(outfile.str().c_str());
-
328
-
329 }
-
330
-
331 vis_RGB.closeWindow();
-
332
-
333 if (printmessages) {
-
334 std::cout << "done." << std::endl;
-
335 }
-
336
-
337 //keep track of the original color and texture override flag for each primitive so we can change it back at the end
-
338 std::vector<RGBAcolor> color_original;
-
339 std::vector<bool> textureoverride_original;
-
340 color_original.resize(UUIDs_all.size());
-
341 textureoverride_original.resize(UUIDs_all.size());
-
342
-
343 //set color of all primitives based on label RGB color code
-
344 for (int p = 0; p < UUIDs_all.size(); p++) {
-
345 color_original.at(p) = context->getPrimitiveColorRGBA(UUIDs_all.at(p));
-
346 textureoverride_original.at(p) = context->isPrimitiveTextureColorOverridden(UUIDs_all.at(p));
-
347 }
-
348
-
349 //------ Combined image labeled by RGB color code --------//
-
350
-
351 if (printmessages) {
-
352 std::cout << "Generating labeled image containing " << labelIDs.size() << " label groups..." << std::endl;
-
353 }
-
354
-
355 Visualizer vis(window_width, window_height, 0, false);
-
356 vis.disableMessages();
-
357
-
358 vis.getFramebufferSize(framebufferW, framebufferH);
-
359
-
360 outfile.clear();
-
361 outfile.str("");
-
362 outfile << odir << "/ID_mapping.txt";
-
363 //std::snprintf(outfile, odir.size()+24, "%s/ID_mapping.txt", odir.c_str());
-
364 std::ofstream mapping_file(outfile.str());
-
365
-
366 int gID = 0;
-
367 for ( auto g = labelIDs.begin(); g != labelIDs.end(); ++g) { //looping over labels
-
368
-
369 //todo I think some additional modifications will be needed to make this work again
-
370// mapping_file << g->first << " " << g->second << std::endl;
-
371 std::vector<uint> label_group_IDs = g->second;
-
372
-
373 std::string label = g->first;
-
374
-
375 assert( labelIDs.at(label).size()==labelUUIDs.at(label).size() );
-
376
-
377 for (size_t group = 0; group < label_group_IDs.size(); group++) {//looping over objects within each label
-
378
-
379 gID = label_group_IDs.at(group);
-
380 RGBcolor code = int2rgb(gID);
-
381 std::vector<uint> UUIDs_group = labelUUIDs.at(label).at(group);
-
382 for (int p = 0; p < UUIDs_group.size(); p++) { //looping over primitives in group
-
383
-
384 if (context->doesPrimitiveDataExist(UUIDs_group.at(p), "object_label")) { //primitive has been labeled
-
385
-
386 context->setPrimitiveColor(UUIDs_group.at(p),code);
-
387
-
388 } else { //primitive was not labeled, assign default color of white
-
389 context->setPrimitiveColor( UUIDs_group.at(p), make_RGBcolor(1, 1, 1));
-
390 }
-
391 context->overridePrimitiveTextureColor(UUIDs_group.at(p));
-
392 }
-
393
-
394 }
-
395 }
-
396
-
397 //make all unlabeled primitives white
-
398 for( size_t p=0; p<UUIDs_all.size(); p++ ){
-
399
-
400 if ( !context->doesPrimitiveDataExist(UUIDs_all.at(p), "object_label")) { //primitive has NOT been labeled
-
401 context->setPrimitiveColor(UUIDs_all.at(p),make_RGBcolor(1, 1, 1));
-
402 }
-
403 context->overridePrimitiveTextureColor(UUIDs_all.at(p));
-
404
-
405 }
-
406
-
407 mapping_file.close();
-
408
-
409 vis.setBackgroundColor(make_RGBcolor(1, 1, 1));
+
271 std::string slash = "/";
+
272#ifdef _WIN32
+
273 std::replace(odir.begin(), odir.end(), '/', '\\');
+
274 slash = "\\";
+
275#endif
+
276 bool dir = std::filesystem::create_directory(odir);
+
277 if (!dir && !std::filesystem::exists(odir)) {
+
278 helios_runtime_error("ERROR (SyntheticAnnotation::render): output directory " + std::string(outputdir) + " could not be created. Exiting...");
+
279 }
+
280 //create sub-directory structure for each view
+
281 for( int d=0; d<camera_position.size(); d++ ){
+
282 std::stringstream viewdir;
+
283 viewdir << odir << "view" << std::setfill('0') << std::setw(5) << d << slash;
+
284 dir = std::filesystem::create_directory(viewdir.str());
+
285 if (!dir && !std::filesystem::exists(viewdir.str())) {
+
286 helios_runtime_error("ERROR (SyntheticAnnotation::render): view sub-directory could not be created. Exiting...");
+
287 }
+
288 }
+
289
+
290 uint framebufferW, framebufferH;
+
291 std::stringstream outfile;
+
292
+
293 //------ RGB rendering with no labels --------//
+
294
+
295 if (printmessages) {
+
296 std::cout << "Rendering RGB image containing " << UUIDs_all.size() / 1000.f << "K primitives..." << std::flush;
+
297 }
+
298
+
299 Visualizer vis_RGB(window_width, window_height, 8, false);
+
300 vis_RGB.disableMessages();
+
301
+
302 vis_RGB.getFramebufferSize(framebufferW, framebufferH);
+
303
+
304 vis_RGB.buildContextGeometry(context);
+
305 vis_RGB.hideWatermark();
+
306 vis_RGB.setBackgroundColor(background_color);
+
307 vis_RGB.addSkyDomeByCenter( 20, make_vec3(0,0,0), 30, "plugins/visualizer/textures/SkyDome_clouds.jpg" );
+
308 vis_RGB.setLightDirection(sphere2cart(make_SphericalCoord(30 * M_PI / 180.f, 205 * M_PI / 180.f)));
+
309 vis_RGB.setLightingModel(Visualizer::LIGHTING_PHONG_SHADOWED);
+
310
+
311 //todo: need to add option to tell which sky dome image file to use
+
312 //vis_RGB.addSkyDomeByCenter( 50, make_vec3(0,0,0), 30, "plugins/visualizer/textures/SkyDome_clouds.jpg" );
+
313
+
314 for( int view=0; view<camera_position.size(); view++ ) {
+
315
+
316 vis_RGB.setCameraPosition(camera_position.at(view), camera_lookat.at(view));
+
317
+
318 vis_RGB.plotUpdate( true );
+
319
+
320 wait(5);
+
321
+
322 outfile.clear();
+
323 outfile.str("");
+
324 outfile << odir << "view" << std::setfill('0') << std::setw(5) << view << "/RGB_rendering.jpeg";
+
325 //std::snprintf(outfile, odir.size()+48, "%sview%05d/RGB_rendering.jpeg", odir.c_str(),view);
+
326 vis_RGB.printWindow(outfile.str().c_str());
+
327
+
328 }
+
329
+
330 vis_RGB.closeWindow();
+
331
+
332 if (printmessages) {
+
333 std::cout << "done." << std::endl;
+
334 }
+
335
+
336 //keep track of the original color and texture override flag for each primitive so we can change it back at the end
+
337 std::vector<RGBAcolor> color_original;
+
338 std::vector<bool> textureoverride_original;
+
339 color_original.resize(UUIDs_all.size());
+
340 textureoverride_original.resize(UUIDs_all.size());
+
341
+
342 //set color of all primitives based on label RGB color code
+
343 for (int p = 0; p < UUIDs_all.size(); p++) {
+
344 color_original.at(p) = context->getPrimitiveColorRGBA(UUIDs_all.at(p));
+
345 textureoverride_original.at(p) = context->isPrimitiveTextureColorOverridden(UUIDs_all.at(p));
+
346 }
+
347
+
348 //------ Combined image labeled by RGB color code --------//
+
349
+
350 if (printmessages) {
+
351 std::cout << "Generating labeled image containing " << labelIDs.size() << " label groups..." << std::endl;
+
352 }
+
353
+
354 Visualizer vis(window_width, window_height, 0, false);
+
355 vis.disableMessages();
+
356
+
357 vis.getFramebufferSize(framebufferW, framebufferH);
+
358
+
359 outfile.clear();
+
360 outfile.str("");
+
361 outfile << odir << "/ID_mapping.txt";
+
362 //std::snprintf(outfile, odir.size()+24, "%s/ID_mapping.txt", odir.c_str());
+
363 std::ofstream mapping_file(outfile.str());
+
364
+
365 int gID = 0;
+
366 for ( auto g = labelIDs.begin(); g != labelIDs.end(); ++g) { //looping over labels
+
367
+
368 //todo I think some additional modifications will be needed to make this work again
+
369// mapping_file << g->first << " " << g->second << std::endl;
+
370 std::vector<uint> label_group_IDs = g->second;
+
371
+
372 std::string label = g->first;
+
373
+
374 assert( labelIDs.at(label).size()==labelUUIDs.at(label).size() );
+
375
+
376 for (size_t group = 0; group < label_group_IDs.size(); group++) {//looping over objects within each label
+
377
+
378 gID = label_group_IDs.at(group);
+
379 RGBcolor code = int2rgb(gID);
+
380 std::vector<uint> UUIDs_group = labelUUIDs.at(label).at(group);
+
381 for (int p = 0; p < UUIDs_group.size(); p++) { //looping over primitives in group
+
382
+
383 if (context->doesPrimitiveDataExist(UUIDs_group.at(p), "object_label")) { //primitive has been labeled
+
384
+
385 context->setPrimitiveColor(UUIDs_group.at(p),code);
+
386
+
387 } else { //primitive was not labeled, assign default color of white
+
388 context->setPrimitiveColor( UUIDs_group.at(p), make_RGBcolor(1, 1, 1));
+
389 }
+
390 context->overridePrimitiveTextureColor(UUIDs_group.at(p));
+
391 }
+
392
+
393 }
+
394 }
+
395
+
396 //make all unlabeled primitives white
+
397 for( size_t p=0; p<UUIDs_all.size(); p++ ){
+
398
+
399 if ( !context->doesPrimitiveDataExist(UUIDs_all.at(p), "object_label")) { //primitive has NOT been labeled
+
400 context->setPrimitiveColor(UUIDs_all.at(p),make_RGBcolor(1, 1, 1));
+
401 }
+
402 context->overridePrimitiveTextureColor(UUIDs_all.at(p));
+
403
+
404 }
+
405
+
406 mapping_file.close();
+
407
+
408 vis.setBackgroundColor(make_RGBcolor(1, 1, 1));
+
409
410
-
411
-
412 std::vector<uint> pixels;
-
413 pixels.resize(framebufferH * framebufferW * 3);
-
414
-
415 vis.buildContextGeometry(context);
-
416 vis.hideWatermark();
-
417
-
418 for( int view=0; view<camera_position.size(); view++ ) {
-
419
-
420 vis.setCameraPosition(camera_position.at(view), camera_lookat.at(view));
-
421
-
422 vis.plotUpdate( true );
-
423
-
424 vis.getWindowPixelsRGB(&pixels[0]);
-
425
-
426 outfile.clear();
-
427 outfile.str("");
-
428 outfile << odir << "view" << std::setfill('0') << std::setw(5) << view << "/pixelID_combined.txt";
-
429 //std::snprintf(outfile, odir.size()+48, "%sview%05d/pixelID_combined.txt", odir.c_str(), view);
-
430 std::ofstream file(outfile.str());
-
431 int t = 0;
-
432 for (int j = framebufferH; j > 0; j--) {
-
433 for (int i = 0; i < framebufferW; i++) {
-
434
-
435 uint ID = rgb2int(make_RGBcolor(pixels[t] / 255.f, pixels[t + 1] / 255.f, pixels[t + 2] / 255.f));
-
436 file << ID << " " << std::flush;
-
437
-
438 t += 3;
-
439
-
440 }
-
441 file << std::endl;
-
442
-
443 }
-
444 file.close();
-
445 int t_max = t;
-
446 //------ Generate labels for objects with occlusion --------//
-
447
-
448 if( objectdetection_enabled ){
-
449
-
450 if( printmessages ){
-
451 std::cout << "Generating rectangular labels for view " << view << "..." << std::flush;
-
452 }
-
453
-
454 int4 bbox;
-
455
-
456 for ( auto g = labelIDs.begin(); g != labelIDs.end(); ++g) { //looping over labels
-
457 outfile.clear();
-
458 outfile.str("");
-
459 outfile << odir << "view" << std::setfill('0') << std::setw(5) << view << "/rectangular_labels_" << g->first.c_str() << ".txt";
-
460 //std::snprintf(outfile, outputdir.size()+48, "%s/view%05d/rectangular_labels_%s.txt", outputdir,view,g->first.c_str());
-
461 std::ofstream labelfile_rectoccluded(outfile.str());
-
462 for (size_t group = 0; group < g->second.size(); group++) {//looping over objects within each label
-
463
-
464 gID = g->second.at(group);
-
465
-
466 uint pixelcount = getGroupRectangularBBox( gID, pixels, framebufferW, framebufferH, bbox );
-
467
-
468 if( pixelcount>=labelminpixels ){
-
469
-
470 //todo: This doesn't actually take into account different label groups. Need to write in different format.
-
471 labelfile_rectoccluded << 0 << " " << (bbox.x + 0.5 * (bbox.y - bbox.x)) / float(framebufferW) << " "
-
472 << (bbox.z + 0.5 * (bbox.w - bbox.z)) / float(framebufferH) << " " << std::setprecision(6)
-
473 << std::fixed << (bbox.y - bbox.x) / float(framebufferW) << " "
-
474 << (bbox.w - bbox.z) / float(framebufferH) << std::endl;
-
475
-
476 }
-
477
-
478 }
-
479 labelfile_rectoccluded.close();
-
480 }
-
481
-
482
-
483
-
484 if( printmessages ){
-
485 std::cout << "done." << std::endl;
-
486 }
-
487
-
488 }
-
489
-
490 if( semanticsegmentation_enabled ){
-
491
-
492 if (printmessages) {
-
493 std::cout << "Performing semantic segmentation for view " << view << "... and element: " << std::flush << endl;
-
494 }
-
495
-
496 int cont = 1;
-
497 int new_label = 0;
-
498 std::vector<int> ID2;
-
499 std::vector<uint> groupIDall;
-
500 int element_position;
-
501 //Extract masks and write to file for each Label group
-
502 outfile.clear();
-
503 outfile.str("");
-
504 outfile << odir << "view" << std::setfill('0') << std::setw(5) << view << "/semantic_segmentation_ID_mapping.txt";
-
505 //std::snprintf(outfile, odir.size()+48, "%sview%05d/semantic_segmentation_ID_mapping.txt", odir.c_str(), view);
-
506 std::ofstream SemanticSegmentationID(outfile.str());
-
507 SemanticSegmentationID << "Element" << " " << "Label" << std::endl;
-
508 for ( auto g = labelIDs.begin(); g != labelIDs.end(); ++g) { //looping over labels
-
509 new_label += 1;
-
510 cout << g->first << endl;
-
511 SemanticSegmentationID << g->first << " " << new_label << std::endl;
-
512 outfile.clear();
-
513 outfile.str("");
-
514 outfile << odir << "view" << std::setfill('0') << std::setw(5) << view << "/semantic_segmentation.txt";
-
515 //std::snprintf(outfile, odir.size()+48, "%sview%05d/semantic_segmentation.txt", odir.c_str(), view);
-
516 std::ofstream SemanticSegmentation(outfile.str());
-
517 std::vector<uint> groupID;
-
518 for (size_t group = 0; group < g->second.size(); group++) {//looping over objects within each label
-
519 gID = g->second.at(group);
-
520 groupID.push_back(gID);
-
521 }
-
522 groupIDall.insert(end(groupIDall),begin(groupID),end(groupID));
-
523
-
524 if (cont == 1) {t = t_max; }
-
525 else if (cont == 0) {t = 0; }
-
526
-
527 // Create blank image
-
528 if (new_label == 1) {
-
529 for( int j=0; j<framebufferH; j++ ){
-
530 for( int i=0; i<framebufferW; i++ ){
-
531
-
532 ID2.push_back(rgb2int( make_RGBcolor(1, 1, 1)));
-
533
-
534 }
-
535 }
-
536 }
-
537 element_position = 0;
-
538 //Add labels of objects to image
-
539 for( int j=framebufferH; j>0; j-- ){
-
540 for( int i=0; i<framebufferW; i++ ){
+
411 std::vector<uint> pixels;
+
412 pixels.resize(framebufferH * framebufferW * 3);
+
413
+
414 vis.buildContextGeometry(context);
+
415 vis.hideWatermark();
+
416
+
417 for( int view=0; view<camera_position.size(); view++ ) {
+
418
+
419 vis.setCameraPosition(camera_position.at(view), camera_lookat.at(view));
+
420
+
421 vis.plotUpdate( true );
+
422
+
423 vis.getWindowPixelsRGB(&pixels[0]);
+
424
+
425 outfile.clear();
+
426 outfile.str("");
+
427 outfile << odir << "view" << std::setfill('0') << std::setw(5) << view << "/pixelID_combined.txt";
+
428 //std::snprintf(outfile, odir.size()+48, "%sview%05d/pixelID_combined.txt", odir.c_str(), view);
+
429 std::ofstream file(outfile.str());
+
430 int t = 0;
+
431 for (int j = framebufferH; j > 0; j--) {
+
432 for (int i = 0; i < framebufferW; i++) {
+
433
+
434 uint ID = rgb2int(make_RGBcolor(pixels[t] / 255.f, pixels[t + 1] / 255.f, pixels[t + 2] / 255.f));
+
435 file << ID << " " << std::flush;
+
436
+
437 t += 3;
+
438
+
439 }
+
440 file << std::endl;
+
441
+
442 }
+
443 file.close();
+
444 int t_max = t;
+
445 //------ Generate labels for objects with occlusion --------//
+
446
+
447 if( objectdetection_enabled ){
+
448
+
449 if( printmessages ){
+
450 std::cout << "Generating rectangular labels for view " << view << "..." << std::flush;
+
451 }
+
452
+
453 int4 bbox;
+
454
+
455 for ( auto g = labelIDs.begin(); g != labelIDs.end(); ++g) { //looping over labels
+
456 outfile.clear();
+
457 outfile.str("");
+
458 outfile << odir << "view" << std::setfill('0') << std::setw(5) << view << "/rectangular_labels_" << g->first.c_str() << ".txt";
+
459 //std::snprintf(outfile, outputdir.size()+48, "%s/view%05d/rectangular_labels_%s.txt", outputdir,view,g->first.c_str());
+
460 std::ofstream labelfile_rectoccluded(outfile.str());
+
461 for (size_t group = 0; group < g->second.size(); group++) {//looping over objects within each label
+
462
+
463 gID = g->second.at(group);
+
464
+
465 uint pixelcount = getGroupRectangularBBox( gID, pixels, framebufferW, framebufferH, bbox );
+
466
+
467 if( pixelcount>=labelminpixels ){
+
468
+
469 //todo: This doesn't actually take into account different label groups. Need to write in different format.
+
470 labelfile_rectoccluded << 0 << " " << (bbox.x + 0.5 * (bbox.y - bbox.x)) / float(framebufferW) << " "
+
471 << (bbox.z + 0.5 * (bbox.w - bbox.z)) / float(framebufferH) << " " << std::setprecision(6)
+
472 << std::fixed << (bbox.y - bbox.x) / float(framebufferW) << " "
+
473 << (bbox.w - bbox.z) / float(framebufferH) << std::endl;
+
474
+
475 }
+
476
+
477 }
+
478 labelfile_rectoccluded.close();
+
479 }
+
480
+
481
+
482
+
483 if( printmessages ){
+
484 std::cout << "done." << std::endl;
+
485 }
+
486
+
487 }
+
488
+
489 if( semanticsegmentation_enabled ){
+
490
+
491 if (printmessages) {
+
492 std::cout << "Performing semantic segmentation for view " << view << "... and element: " << std::flush << endl;
+
493 }
+
494
+
495 int cont = 1;
+
496 int new_label = 0;
+
497 std::vector<int> ID2;
+
498 std::vector<uint> groupIDall;
+
499 int element_position;
+
500 //Extract masks and write to file for each Label group
+
501 outfile.clear();
+
502 outfile.str("");
+
503 outfile << odir << "view" << std::setfill('0') << std::setw(5) << view << "/semantic_segmentation_ID_mapping.txt";
+
504 //std::snprintf(outfile, odir.size()+48, "%sview%05d/semantic_segmentation_ID_mapping.txt", odir.c_str(), view);
+
505 std::ofstream SemanticSegmentationID(outfile.str());
+
506 SemanticSegmentationID << "Element" << " " << "Label" << std::endl;
+
507 for ( auto g = labelIDs.begin(); g != labelIDs.end(); ++g) { //looping over labels
+
508 new_label += 1;
+
509 cout << g->first << endl;
+
510 SemanticSegmentationID << g->first << " " << new_label << std::endl;
+
511 outfile.clear();
+
512 outfile.str("");
+
513 outfile << odir << "view" << std::setfill('0') << std::setw(5) << view << "/semantic_segmentation.txt";
+
514 //std::snprintf(outfile, odir.size()+48, "%sview%05d/semantic_segmentation.txt", odir.c_str(), view);
+
515 std::ofstream SemanticSegmentation(outfile.str());
+
516 std::vector<uint> groupID;
+
517 for (size_t group = 0; group < g->second.size(); group++) {//looping over objects within each label
+
518 gID = g->second.at(group);
+
519 groupID.push_back(gID);
+
520 }
+
521 groupIDall.insert(end(groupIDall),begin(groupID),end(groupID));
+
522
+
523 if (cont == 1) {t = t_max; }
+
524 else if (cont == 0) {t = 0; }
+
525
+
526 // Create blank image
+
527 if (new_label == 1) {
+
528 for( int j=0; j<framebufferH; j++ ){
+
529 for( int i=0; i<framebufferW; i++ ){
+
530
+
531 ID2.push_back(rgb2int( make_RGBcolor(1, 1, 1)));
+
532
+
533 }
+
534 }
+
535 }
+
536 element_position = 0;
+
537 //Add labels of objects to image
+
538 for( int j=framebufferH; j>0; j-- ){
+
539 for( int i=0; i<framebufferW; i++ ){
+
540
541
-
542
-
543 t = 3*((framebufferW-1)*j + i + j);
-
544 if (std::count(groupID.begin(),groupID.end(),rgb2int(make_RGBcolor(pixels[t]/255.f,pixels[t+1]/255.f,pixels[t+2]/255.f)))){
-
545 ID2.at(element_position) = new_label;
-
546 }
-
547
-
548 SemanticSegmentation << ID2.at(element_position) << " " << std::flush;
-
549
-
550 element_position+=1;
+
542 t = 3*((framebufferW-1)*j + i + j);
+
543 if (std::count(groupID.begin(),groupID.end(),rgb2int(make_RGBcolor(pixels[t]/255.f,pixels[t+1]/255.f,pixels[t+2]/255.f)))){
+
544 ID2.at(element_position) = new_label;
+
545 }
+
546
+
547 SemanticSegmentation << ID2.at(element_position) << " " << std::flush;
+
548
+
549 element_position+=1;
+
550
551
-
552
-
553 }
-
554 //labelfile_semanticsegmentation << std::endl; //Use this line if you want separete files for the Semantic Segmentation
-
555 SemanticSegmentation << std::endl;
-
556 }
-
557 SemanticSegmentation.close();
-
558
-
559 }
-
560 SemanticSegmentationID.close();
-
561
-
562 if (printmessages) {
-
563 std::cout << "Semantic segmentation ... done." << std::endl;
-
564 }
-
565
-
566 }
-
567
-
568
-
569
-
570 }
-
571
-
572 vis.closeWindow();
-
573
-
574 vis.clearGeometry();
-
575
-
576/* if (printmessages) {
-
577 std::cout << "Occluded objets ... done." << std::endl;
-
578 } */
-
579
-
580 //------ Generate labels for objects without occlusion --------//
-
581
-
582 if( instancesegmentation_enabled ){
-
583
-
584 int4 bbox;
-
585
-
586 for( int view=0; view<camera_position.size(); view++ ) {
-
587
-
588 if( printmessages ){
-
589 std::cout << "Performing instance segmentation for view " << view << "... and element: " << std::flush << endl;
-
590 }
-
591
-
592 for (std::map<std::string, std::vector<uint> >::iterator g = labelIDs.begin();
-
593 g != labelIDs.end(); ++g) { //looping over labels
-
594 int counter_object = 0;
-
595 cout << g->first << endl;
-
596 for (size_t group = 0; group < g->second.size(); group++) {//looping over objects within each label
-
597 counter_object += 1;
-
598 gID = g->second.at(group);
-
599
-
600 vis.buildContextGeometry(context, labelUUIDs.at(g->first).at(group));
-
601
-
602 vis.setCameraPosition(camera_position.at(view), camera_lookat.at(view));
-
603
-
604 vis.plotUpdate( true );
-
605
-
606 outfile.clear();
-
607 outfile.str("");
-
608 outfile << odir << "view" << std::setfill('0') << std::setw(5) << view << "/instance_segmentation_" << g->first.c_str() << "_" << std::setfill('0') << std::setw(7) << ".txt";
-
609 //std::snprintf(outfile, odir.size()+96, "%sview%05d/instance_segmentation_%s_%07d.txt",odir.c_str(), view,g->first.c_str(),counter_object);
-
610
-
611 //Extract masks and write to file
-
612
-
613 vis.getWindowPixelsRGB(&pixels[0]);
-
614
-
615 writePixelID(outfile.str().c_str(),labelminpixels,&vis);
-
616
-
617 vis.clearGeometry();
-
618
-
619 }
-
620 }
-
621
-
622 }
-
623
-
624 if( printmessages ){
-
625 std::cout << "done." << std::endl;
-
626 }
-
627
-
628 }
-
629
-
630 //------- Clean up ---------//
-
631
-
632 //set primitive colors back to how they were before
-
633 for (int p = 0; p < UUIDs_all.size(); p++) {
-
634 context->setPrimitiveColor(UUIDs_all.at(p),color_original.at(p));
-
635 if (!textureoverride_original.at(p)) {
-
636 context->usePrimitiveTextureColor(UUIDs_all.at(p));
-
637 }
-
638 }
+
552 }
+
553 //labelfile_semanticsegmentation << std::endl; //Use this line if you want separete files for the Semantic Segmentation
+
554 SemanticSegmentation << std::endl;
+
555 }
+
556 SemanticSegmentation.close();
+
557
+
558 }
+
559 SemanticSegmentationID.close();
+
560
+
561 if (printmessages) {
+
562 std::cout << "Semantic segmentation ... done." << std::endl;
+
563 }
+
564
+
565 }
+
566
+
567
+
568
+
569 }
+
570
+
571 vis.closeWindow();
+
572
+
573 vis.clearGeometry();
+
574
+
575/* if (printmessages) {
+
576 std::cout << "Occluded objets ... done." << std::endl;
+
577 } */
+
578
+
579 //------ Generate labels for objects without occlusion --------//
+
580
+
581 if( instancesegmentation_enabled ){
+
582
+
583 int4 bbox;
+
584
+
585 for( int view=0; view<camera_position.size(); view++ ) {
+
586
+
587 if( printmessages ){
+
588 std::cout << "Performing instance segmentation for view " << view << "... and element: " << std::flush << endl;
+
589 }
+
590
+
591 for (std::map<std::string, std::vector<uint> >::iterator g = labelIDs.begin();
+
592 g != labelIDs.end(); ++g) { //looping over labels
+
593 int counter_object = 0;
+
594 cout << g->first << endl;
+
595 for (size_t group = 0; group < g->second.size(); group++) {//looping over objects within each label
+
596 counter_object += 1;
+
597 gID = g->second.at(group);
+
598
+
599 vis.buildContextGeometry(context, labelUUIDs.at(g->first).at(group));
+
600
+
601 vis.setCameraPosition(camera_position.at(view), camera_lookat.at(view));
+
602
+
603 vis.plotUpdate( true );
+
604
+
605 outfile.clear();
+
606 outfile.str("");
+
607 outfile << odir << "view" << std::setfill('0') << std::setw(5) << view << "/instance_segmentation_" << g->first.c_str() << "_" << std::setfill('0') << std::setw(7) << ".txt";
+
608 //std::snprintf(outfile, odir.size()+96, "%sview%05d/instance_segmentation_%s_%07d.txt",odir.c_str(), view,g->first.c_str(),counter_object);
+
609
+
610 //Extract masks and write to file
+
611
+
612 vis.getWindowPixelsRGB(&pixels[0]);
+
613
+
614 writePixelID(outfile.str().c_str(),labelminpixels,&vis);
+
615
+
616 vis.clearGeometry();
+
617
+
618 }
+
619 }
+
620
+
621 }
+
622
+
623 if( printmessages ){
+
624 std::cout << "done." << std::endl;
+
625 }
+
626
+
627 }
+
628
+
629 //------- Clean up ---------//
+
630
+
631 //set primitive colors back to how they were before
+
632 for (int p = 0; p < UUIDs_all.size(); p++) {
+
633 context->setPrimitiveColor(UUIDs_all.at(p),color_original.at(p));
+
634 if (!textureoverride_original.at(p)) {
+
635 context->usePrimitiveTextureColor(UUIDs_all.at(p));
+
636 }
+
637 }
+
638
639
-
640
-
641}
+
640}
-
642
-
643uint SyntheticAnnotation::getGroupRectangularBBox( const uint ID, const std::vector<uint> &pixels, const uint framebuffer_width, const uint framebuffer_height, helios::int4& bbox ) const {
-
644
-
645 int t=0;
-
646 int xmin = framebuffer_width;
-
647 int xmax = 0;
-
648 int ymin = framebuffer_height;
-
649 int ymax = 0;
-
650 int pixelcount = 0;
-
651
-
652 for( int j=0; j<framebuffer_height; j++ ){
-
653 for( int i=0; i<framebuffer_width; i++ ){
-
654
-
655 if( rgb2int(make_RGBcolor(pixels[t]/255.f,pixels[t+1]/255.f,pixels[t+2]/255.f)) != ID ){
-
656 t+=3;
-
657 continue;
-
658 }
-
659
-
660 if( i<xmin ){
-
661 xmin=i;
-
662 }
-
663 if( i>xmax ){
-
664 xmax=i;
-
665 }
-
666 if( j<ymin ){
-
667 ymin=j;
-
668 }
-
669 if( j>ymax ){
-
670 ymax=j;
-
671 }
-
672
-
673 t+=3;
-
674 pixelcount++;
-
675
-
676 }
-
677 }
-
678
-
679 bbox = make_int4( xmin, xmax, ymin, ymax );
-
680
-
681 if( xmin==framebuffer_width || xmax==0 || ymin==framebuffer_height || ymax==0 ){
-
682 bbox = make_int4(0,0,0,0);
-
683 return 0;
-
684 }else{
-
685 return pixelcount;
-
686 }
-
687
-
688}
-
689
-
690helios::RGBcolor SyntheticAnnotation::int2rgb( const int ID ) const{
-
691
-
692 float R, G, B;
-
693 int r, g, b;
-
694 int rem;
-
695
-
696 b = floor(float(ID)/256.f/256.f);
-
697 rem = ID-b*256*256;
-
698 g = floor(float(rem)/256.f);
-
699 rem = rem-g*256;
-
700 r = rem;
-
701
-
702 R = float(r)/255.f;
-
703 G = float(g)/255.f;
-
704 B = float(b)/255.f;
-
705
-
706 return helios::make_RGBcolor(R,G,B);
-
707
-
708}
-
709
-
710int SyntheticAnnotation::rgb2int( const helios::RGBcolor color ) const{
-
711
-
712 int ID = color.r*255+color.g*255*256+color.b*255*256*256;
-
713
-
714 return ID;
-
715
-
716}
-
717
-
718void SyntheticAnnotation::writePixelID( const char* filename, const int labelminpixels, Visualizer* vis ) const{
-
719
-
720 uint framebufferH, framebufferW;
-
721
-
722 vis->getFramebufferSize(framebufferW,framebufferH);
-
723
-
724 std::vector<uint> pixels;
-
725 pixels.resize(framebufferH*framebufferW*3);
-
726
-
727 vis->getWindowPixelsRGB( &pixels[0] );
-
728
-
729 int t=0;
-
730 int xmin = framebufferW;
-
731 int xmax = 0;
-
732 int ymin = framebufferH;
-
733 int ymax = 0;
-
734 int pixelcount = 0;
-
735
-
736 for( int j=0; j<framebufferH; j++ ){
-
737 for( int i=0; i<framebufferW; i++ ){
-
738
-
739 if( pixels[t]==255 && pixels[t+1]==255 && pixels[t+2]==255 ){
-
740 t+=3;
-
741 continue;
-
742 }
-
743
-
744 if( i<xmin ){
-
745 xmin=i;
-
746 }
-
747 if( i>xmax ){
-
748 xmax=i;
-
749 }
-
750 if( j<ymin ){
-
751 ymin=j;
-
752 }
-
753 if( j>ymax ){
-
754 ymax=j;
-
755 }
-
756
-
757 t+=3;
-
758 pixelcount++;
-
759
-
760 }
-
761 }
-
762
-
763 if( xmin==framebufferW || xmax==0 || ymin==framebufferH || ymax==0 || pixelcount<labelminpixels ){
-
764 return;
-
765 }
-
766
-
767 std::ofstream file(filename);
-
768
-
769 file << xmin << " " << xmax << " " << ymin << " " << ymax << std::endl;
-
770
-
771 // t=0;
-
772 for( int j=framebufferH; j>0; j-- ){
-
773 for( int i=0; i<framebufferW; i++ ){
-
774
-
775 if( i>=xmin && i<=xmax && j>=ymin && j<=ymax ){
-
776
-
777 int ID = rgb2int( make_RGBcolor(pixels[t]/255.f,pixels[t+1]/255.f,pixels[t+2]/255.f) );
-
778 file << ID << " " << std::flush;
-
779
-
780 }
-
781
-
782 // t+=3;
-
783 t = 3*((framebufferW-1)*j + i + j);
-
784
-
785 }
-
786 if( j>=ymin && j<=ymax ){
-
787 file << std::endl;
-
788 }
-
789 }
-
790 file.close();
-
791}
+
641
+
642uint SyntheticAnnotation::getGroupRectangularBBox( const uint ID, const std::vector<uint> &pixels, const uint framebuffer_width, const uint framebuffer_height, helios::int4& bbox ) const {
+
643
+
644 int t=0;
+
645 int xmin = framebuffer_width;
+
646 int xmax = 0;
+
647 int ymin = framebuffer_height;
+
648 int ymax = 0;
+
649 int pixelcount = 0;
+
650
+
651 for( int j=0; j<framebuffer_height; j++ ){
+
652 for( int i=0; i<framebuffer_width; i++ ){
+
653
+
654 if( rgb2int(make_RGBcolor(pixels[t]/255.f,pixels[t+1]/255.f,pixels[t+2]/255.f)) != ID ){
+
655 t+=3;
+
656 continue;
+
657 }
+
658
+
659 if( i<xmin ){
+
660 xmin=i;
+
661 }
+
662 if( i>xmax ){
+
663 xmax=i;
+
664 }
+
665 if( j<ymin ){
+
666 ymin=j;
+
667 }
+
668 if( j>ymax ){
+
669 ymax=j;
+
670 }
+
671
+
672 t+=3;
+
673 pixelcount++;
+
674
+
675 }
+
676 }
+
677
+
678 bbox = make_int4( xmin, xmax, ymin, ymax );
+
679
+
680 if( xmin==framebuffer_width || xmax==0 || ymin==framebuffer_height || ymax==0 ){
+
681 bbox = make_int4(0,0,0,0);
+
682 return 0;
+
683 }else{
+
684 return pixelcount;
+
685 }
+
686
+
687}
+
688
+
689helios::RGBcolor SyntheticAnnotation::int2rgb( const int ID ) const{
+
690
+
691 float R, G, B;
+
692 int r, g, b;
+
693 int rem;
+
694
+
695 b = floor(float(ID)/256.f/256.f);
+
696 rem = ID-b*256*256;
+
697 g = floor(float(rem)/256.f);
+
698 rem = rem-g*256;
+
699 r = rem;
+
700
+
701 R = float(r)/255.f;
+
702 G = float(g)/255.f;
+
703 B = float(b)/255.f;
+
704
+
705 return helios::make_RGBcolor(R,G,B);
+
706
+
707}
+
708
+
709int SyntheticAnnotation::rgb2int( const helios::RGBcolor color ) const{
+
710
+
711 int ID = color.r*255+color.g*255*256+color.b*255*256*256;
+
712
+
713 return ID;
+
714
+
715}
+
716
+
717void SyntheticAnnotation::writePixelID( const char* filename, const int labelminpixels, Visualizer* vis ) const{
+
718
+
719 uint framebufferH, framebufferW;
+
720
+
721 vis->getFramebufferSize(framebufferW,framebufferH);
+
722
+
723 std::vector<uint> pixels;
+
724 pixels.resize(framebufferH*framebufferW*3);
+
725
+
726 vis->getWindowPixelsRGB( &pixels[0] );
+
727
+
728 int t=0;
+
729 int xmin = framebufferW;
+
730 int xmax = 0;
+
731 int ymin = framebufferH;
+
732 int ymax = 0;
+
733 int pixelcount = 0;
+
734
+
735 for( int j=0; j<framebufferH; j++ ){
+
736 for( int i=0; i<framebufferW; i++ ){
+
737
+
738 if( pixels[t]==255 && pixels[t+1]==255 && pixels[t+2]==255 ){
+
739 t+=3;
+
740 continue;
+
741 }
+
742
+
743 if( i<xmin ){
+
744 xmin=i;
+
745 }
+
746 if( i>xmax ){
+
747 xmax=i;
+
748 }
+
749 if( j<ymin ){
+
750 ymin=j;
+
751 }
+
752 if( j>ymax ){
+
753 ymax=j;
+
754 }
+
755
+
756 t+=3;
+
757 pixelcount++;
+
758
+
759 }
+
760 }
+
761
+
762 if( xmin==framebufferW || xmax==0 || ymin==framebufferH || ymax==0 || pixelcount<labelminpixels ){
+
763 return;
+
764 }
+
765
+
766 std::ofstream file(filename);
+
767
+
768 file << xmin << " " << xmax << " " << ymin << " " << ymax << std::endl;
+
769
+
770 // t=0;
+
771 for( int j=framebufferH; j>0; j-- ){
+
772 for( int i=0; i<framebufferW; i++ ){
+
773
+
774 if( i>=xmin && i<=xmax && j>=ymin && j<=ymax ){
+
775
+
776 int ID = rgb2int( make_RGBcolor(pixels[t]/255.f,pixels[t+1]/255.f,pixels[t+2]/255.f) );
+
777 file << ID << " " << std::flush;
+
778
+
779 }
+
780
+
781 // t+=3;
+
782 t = 3*((framebufferW-1)*j + i + j);
+
783
+
784 }
+
785 if( j>=ymin && j<=ymax ){
+
786 file << std::endl;
+
787 }
+
788 }
+
789 file.close();
+
790}
helios::HELIOS_TYPE_STRING
@ HELIOS_TYPE_STRING
std::string data type
Definition Context.h:63
helios::HELIOS_TYPE_VEC3
@ HELIOS_TYPE_VEC3
helios::vec3 data type
Definition Context.h:53
helios::HELIOS_TYPE_INT2
@ HELIOS_TYPE_INT2
helios::int2 data type
Definition Context.h:57
@@ -930,29 +929,29 @@
Visualizer::setCameraPosition
void setCameraPosition(const helios::vec3 &cameraPosition, const helios::vec3 &lookAt)
Set camera position.
Definition Visualizer.cpp:777
Visualizer::setLightingModel
void setLightingModel(LightingModel lightingmodel)
Set the lighting model for shading of all primitives.
Definition Visualizer.cpp:864
helios::Context
Stores the state associated with simulation.
Definition Context.h:1882
-
helios::Context::setPrimitiveColor
void setPrimitiveColor(uint UUID, const helios::RGBcolor &color)
Method to set the diffuse color of a Primitive.
Definition Context.cpp:7016
-
helios::Context::getPrimitiveColorRGBA
helios::RGBAcolor getPrimitiveColorRGBA(uint UUID) const
Method to return the diffuse color of a Primitive with transparency.
Definition Context.cpp:7012
-
helios::Context::usePrimitiveTextureColor
void usePrimitiveTextureColor(uint UUID)
Use the texture map to color the primitive rather than the constant RGB color. This is function rever...
Definition Context.cpp:7084
-
helios::Context::doesGlobalDataExist
bool doesGlobalDataExist(const char *label) const
Check if global data 'label' exists.
Definition Context_data.cpp:4447
+
helios::Context::setPrimitiveColor
void setPrimitiveColor(uint UUID, const helios::RGBcolor &color)
Method to set the diffuse color of a Primitive.
Definition Context.cpp:7083
+
helios::Context::getPrimitiveColorRGBA
helios::RGBAcolor getPrimitiveColorRGBA(uint UUID) const
Method to return the diffuse color of a Primitive with transparency.
Definition Context.cpp:7079
+
helios::Context::usePrimitiveTextureColor
void usePrimitiveTextureColor(uint UUID)
Use the texture map to color the primitive rather than the constant RGB color. This is function rever...
Definition Context.cpp:7151
+
helios::Context::doesGlobalDataExist
bool doesGlobalDataExist(const char *label) const
Check if global data 'label' exists.
Definition Context_data.cpp:4458
helios::Context::doesPrimitiveDataExist
bool doesPrimitiveDataExist(uint UUID, const char *label) const
Check if primitive data 'label' exists.
Definition Context_data.cpp:1169
-
helios::Context::overridePrimitiveTextureColor
void overridePrimitiveTextureColor(uint UUID)
Override the color in the texture map for all primitives in the Compound Object, in which case the pr...
Definition Context.cpp:7074
+
helios::Context::overridePrimitiveTextureColor
void overridePrimitiveTextureColor(uint UUID)
Override the color in the texture map for all primitives in the Compound Object, in which case the pr...
Definition Context.cpp:7141
helios::Context::getGlobalDataType
HeliosDataType getGlobalDataType(const char *label) const
Get the Helios data type of global data.
Definition Context_data.cpp:4427
helios::Context::getGlobalData
void getGlobalData(const char *label, int &data) const
Get global data value (scalar integer)
Definition Context_data.cpp:4053
-
helios::Context::getAllUUIDs
std::vector< uint > getAllUUIDs() const
Get all primitive UUIDs currently in the Context.
Definition Context.cpp:1758
-
helios::Context::isPrimitiveTextureColorOverridden
bool isPrimitiveTextureColorOverridden(uint UUID) const
Check if color of texture map is overridden by the diffuse R-G-B color of the primitive.
Definition Context.cpp:7094
+
helios::Context::getAllUUIDs
std::vector< uint > getAllUUIDs() const
Get all primitive UUIDs currently in the Context.
Definition Context.cpp:1753
+
helios::Context::isPrimitiveTextureColorOverridden
bool isPrimitiveTextureColorOverridden(uint UUID) const
Check if color of texture map is overridden by the diffuse R-G-B color of the primitive.
Definition Context.cpp:7161
helios::Context::setPrimitiveData
void setPrimitiveData(const uint &UUID, const char *label, const int &data)
Add data value (int) associated with a primitive element.
Definition Context_data.cpp:655
-
helios::Context::doesPrimitiveExist
bool doesPrimitiveExist(uint UUID) const
Check if primitive exists for a given UUID.
Definition Context.cpp:1654
+
helios::Context::doesPrimitiveExist
bool doesPrimitiveExist(uint UUID) const
Check if primitive exists for a given UUID.
Definition Context.cpp:1649
helios::helios_runtime_error
void helios_runtime_error(const std::string &error_message)
Function to throw a runtime error.
Definition global.cpp:29
helios::sphere2cart
vec3 sphere2cart(const SphericalCoord &Spherical)
Convert Spherical coordinates to Cartesian coordinates.
Definition global.cpp:617
helios::wait
void wait(float seconds)
Wait/sleep for a specified amount of time.
Definition global.cpp:306
-
helios::make_RGBcolor
RGBcolor make_RGBcolor(float r, float g, float b)
Make an RGBcolor vector.
Definition helios_vector_types.h:951
-
helios::make_vec3
vec3 make_vec3(float x, float y, float z)
Make a vec3 from three floats.
Definition helios_vector_types.h:587
+
helios::make_RGBcolor
RGBcolor make_RGBcolor(float r, float g, float b)
Make an RGBcolor vector.
Definition helios_vector_types.h:954
+
helios::make_vec3
vec3 make_vec3(float x, float y, float z)
Make a vec3 from three floats.
Definition helios_vector_types.h:589
helios::make_int4
int4 make_int4(int x, int y, int z, int w)
Make an int4 vector from three ints.
Definition helios_vector_types.h:299
-
helios::make_SphericalCoord
SphericalCoord make_SphericalCoord(float elevation_radians, float azimuth_radians)
Make a SphericalCoord by specifying elevation and azimuth.
Definition helios_vector_types.h:1536
-
helios::RGBcolor
R-G-B color vector.
Definition helios_vector_types.h:841
-
helios::RGBcolor::b
float b
Blue color component.
Definition helios_vector_types.h:852
-
helios::RGBcolor::r
float r
Red color component.
Definition helios_vector_types.h:846
-
helios::RGBcolor::g
float g
Green color component.
Definition helios_vector_types.h:849
+
helios::make_SphericalCoord
SphericalCoord make_SphericalCoord(float elevation_radians, float azimuth_radians)
Make a SphericalCoord by specifying elevation and azimuth.
Definition helios_vector_types.h:1539
+
helios::RGBcolor
R-G-B color vector.
Definition helios_vector_types.h:844
+
helios::RGBcolor::b
float b
Blue color component.
Definition helios_vector_types.h:855
+
helios::RGBcolor::r
float r
Red color component.
Definition helios_vector_types.h:849
+
helios::RGBcolor::g
float g
Green color component.
Definition helios_vector_types.h:852
helios::int2
Vector of two elements of type 'int'.
Definition helios_vector_types.h:44
helios::int2::y
int y
Second element in vector.
Definition helios_vector_types.h:50
helios::int2::x
int x
First element in vector.
Definition helios_vector_types.h:48
@@ -961,7 +960,7 @@
helios::int4::z
int z
Third element in vector.
Definition helios_vector_types.h:251
helios::int4::w
int w
Fourth element in vector.
Definition helios_vector_types.h:253
helios::int4::y
int y
Second element in vector.
Definition helios_vector_types.h:249
-
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:502
+
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:503
diff --git a/doc/html/_synthetic_annotation_8h.html b/doc/html/_synthetic_annotation_8h.html index c6d2f0025..c6bd535e2 100644 --- a/doc/html/_synthetic_annotation_8h.html +++ b/doc/html/_synthetic_annotation_8h.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
diff --git a/doc/html/_synthetic_annotation_8h_source.html b/doc/html/_synthetic_annotation_8h_source.html index 49d84b60f..509b1ea7a 100644 --- a/doc/html/_synthetic_annotation_8h_source.html +++ b/doc/html/_synthetic_annotation_8h_source.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
@@ -210,9 +210,9 @@
SyntheticAnnotation::enableInstanceSegmentation
void enableInstanceSegmentation()
Enable calculation and writing of un-occluded object masks for each object (instance segmentation)
Definition SyntheticAnnotation.cpp:162
Visualizer
Class for visualization of simulation results.
Definition Visualizer.h:259
helios::Context
Stores the state associated with simulation.
Definition Context.h:1882
-
helios::RGBcolor
R-G-B color vector.
Definition helios_vector_types.h:841
+
helios::RGBcolor
R-G-B color vector.
Definition helios_vector_types.h:844
helios::int4
Vector of four elements of type 'int'.
Definition helios_vector_types.h:243
-
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:502
+
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:503
diff --git a/doc/html/_tutorials.html b/doc/html/_tutorials.html index c7c0bff6e..ead5d7567 100644 --- a/doc/html/_tutorials.html +++ b/doc/html/_tutorials.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
diff --git a/doc/html/_visualizer_8cpp.html b/doc/html/_visualizer_8cpp.html index 9a9fbb9ec..3d91e2ca5 100644 --- a/doc/html/_visualizer_8cpp.html +++ b/doc/html/_visualizer_8cpp.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
diff --git a/doc/html/_visualizer_8cpp_source.html b/doc/html/_visualizer_8cpp_source.html index 22db2c82f..a3e90b700 100644 --- a/doc/html/_visualizer_8cpp_source.html +++ b/doc/html/_visualizer_8cpp_source.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
@@ -176,7 +176,7 @@
82 if (setjmp(jerr.setjmp_buffer)) {
83 jpeg_destroy_decompress(&cinfo);
84 fclose(infile);
-
85 return 0;
+
85 helios_runtime_error("ERROR (read_JPEG_file): Error reading JPEG file " + std::string(filename));
86 }
87
88 jpeg_create_decompress(&cinfo);
@@ -687,7 +687,7 @@
582 // Default values
583
584 light_direction = make_vec3(1,1,1);
-
585 light_direction.normalize();
+
585 light_direction.normalize();
586 primaryShader.setLightDirection(light_direction);
587
588 primaryLightingModel.push_back( Visualizer::LIGHTING_NONE );
@@ -1312,7 +1312,7 @@
1152 uv_data.resize(12,0);
1153
1154 vec3 normal = cross( v.at(1)-v.at(0), v.at(2)-v.at(1) );
-
1155 normal.normalize();
+
1155 normal.normalize();
1156
1157 for( int i=0; i<6; i++ ){
1158 color_data.at(i*4) = color.r;
@@ -1326,7 +1326,7 @@
1166 }
1167
1168 //Lower left vertex
-
1169 position_data.at(0) = v.at(0).x;
+
1169 position_data.at(0) = v.at(0).x;
1170 position_data.at(1) = v.at(0).y;
1171 position_data.at(2) = v.at(0).z;
1172
@@ -1426,7 +1426,7 @@
1262 uv_data.resize(12,0);
1263
1264 vec3 normal = cross( v.at(1)-v.at(0), v.at(2)-v.at(1) );
-
1265 normal.normalize();
+
1265 normal.normalize();
1266
1267 for( int i=0; i<6; i++ ){
1268 normal_data.at(i*3) = normal.x;
@@ -1435,7 +1435,7 @@
1271 }
1272
1273 //Lower left vertex
-
1274 position_data.at(0) = v.at(0).x;
+
1274 position_data.at(0) = v.at(0).x;
1275 position_data.at(1) = v.at(0).y;
1276 position_data.at(2) = v.at(0).z;
1277 uv_data.at(0) = uvs.at(0).x*float(texture_size.x-1);
@@ -1548,7 +1548,7 @@
1380 uv_data.resize(12,0);
1381
1382 vec3 normal = cross( v.at(1)-v.at(0), v.at(2)-v.at(1) );
-
1383 normal.normalize();
+
1383 normal.normalize();
1384
1385 for( int i=0; i<6; i++ ){
1386 color_data.at(i*4) = color.r;
@@ -1562,7 +1562,7 @@
1394 }
1395
1396 //Lower left vertex
-
1397 position_data.at(0) = v.at(0).x;
+
1397 position_data.at(0) = v.at(0).x;
1398 position_data.at(1) = v.at(0).y;
1399 position_data.at(2) = v.at(0).z;
1400 uv_data.at(0) = uvs.at(0).x*float(texture_size.x-1);
@@ -1668,7 +1668,7 @@
1496 uv_data.resize(12,0);
1497
1498 vec3 normal = cross( v.at(1)-v.at(0), v.at(2)-v.at(1) );
-
1499 normal.normalize();
+
1499 normal.normalize();
1500
1501 for( int i=0; i<6; i++ ){
1502 color_data.at(i*4) = color.r;
@@ -1682,7 +1682,7 @@
1510 }
1511
1512 //Lower left vertex
-
1513 position_data.at(0) = v.at(0).x;
+
1513 position_data.at(0) = v.at(0).x;
1514 position_data.at(1) = v.at(0).y;
1515 position_data.at(2) = v.at(0).z;
1516 uv_data.at(0) = 0;
@@ -1780,10 +1780,10 @@
1604 std::vector<GLfloat> position_data(9), color_data(12), normal_data(9), uv_data(6);
1605
1606 vec3 normal = cross( vertex1-vertex0, vertex2-vertex0 );
-
1607 normal.normalize();
+
1607 normal.normalize();
1608
1609 //Vertex 0
-
1610 position_data[0] = v.at(0).x;
+
1610 position_data[0] = v.at(0).x;
1611 position_data[1] = v.at(0).y;
1612 position_data[2] = v.at(0).z;
1613 color_data[0] = color.r;
@@ -1873,10 +1873,10 @@
1695 std::vector<GLfloat> position_data(9), color_data(12), normal_data(9), uv_data(6);
1696
1697 vec3 normal = cross( vertex1-vertex0, vertex2-vertex0 );
-
1698 normal.normalize();
+
1698 normal.normalize();
1699
1700 //Vertex 0
-
1701 position_data[0] = v.at(0).x;
+
1701 position_data[0] = v.at(0).x;
1702 position_data[1] = v.at(0).y;
1703 position_data[2] = v.at(0).z;
1704 uv_data[0] = uv0.x*texture_size.x;
@@ -1961,10 +1961,10 @@
1781 std::vector<GLfloat> position_data(9), color_data(12), normal_data(9), uv_data(6);
1782
1783 vec3 normal = cross( vertex1-vertex0, vertex2-vertex0 );
-
1784 normal.normalize();
+
1784 normal.normalize();
1785
1786 //Vertex 0
-
1787 position_data[0] = v.at(0).x;
+
1787 position_data[0] = v.at(0).x;
1788 position_data[1] = v.at(0).y;
1789 position_data[2] = v.at(0).z;
1790 color_data[0] = color.r;
@@ -4775,31 +4775,31 @@
Visualizer::getWindowSize
void getWindowSize(uint &width, uint &height) const
Get the size of the display window in pixels.
Definition Visualizer.cpp:941
Visualizer::getDomainBoundingBox
void getDomainBoundingBox(helios::vec2 &xbounds, helios::vec2 &ybounds, helios::vec2 &zbounds) const
Get a box that bounds all primitives in the domain.
Definition Visualizer.cpp:798
Visualizer::setLightingModel
void setLightingModel(LightingModel lightingmodel)
Set the lighting model for shading of all primitives.
Definition Visualizer.cpp:864
-
helios::CompoundObject::getPrimitiveUUIDs
std::vector< uint > getPrimitiveUUIDs() const
Get the UUIDs for all primitives contained in the object.
Definition Context.cpp:2241
+
helios::CompoundObject::getPrimitiveUUIDs
std::vector< uint > getPrimitiveUUIDs() const
Get the UUIDs for all primitives contained in the object.
Definition Context.cpp:2236
helios::Context
Stores the state associated with simulation.
Definition Context.h:1882
helios::Context::getPrimitiveData
void getPrimitiveData(uint UUID, const char *label, int &data) const
Get data associated with a primitive element.
Definition Context_data.cpp:1001
helios::Context::doesObjectDataExist
bool doesObjectDataExist(uint objID, const char *label) const
Check if primitive data 'label' exists.
Definition Context_data.cpp:2908
-
helios::Context::getPrimitiveParentObjectID
uint getPrimitiveParentObjectID(uint UUID) const
Method to return the ID of the parent object the primitive belongs to (default is object 0)
Definition Context.cpp:6894
-
helios::Context::getAllObjectIDs
std::vector< uint > getAllObjectIDs() const
Get the IDs for all Compound Objects in the Context.
Definition Context.cpp:2574
+
helios::Context::getPrimitiveParentObjectID
uint getPrimitiveParentObjectID(uint UUID) const
Method to return the ID of the parent object the primitive belongs to (default is object 0)
Definition Context.cpp:6961
+
helios::Context::getAllObjectIDs
std::vector< uint > getAllObjectIDs() const
Get the IDs for all Compound Objects in the Context.
Definition Context.cpp:2569
helios::Context::getObjectData
void getObjectData(uint objID, const char *label, int &data) const
Get data associated with a compound object.
Definition Context_data.cpp:2740
-
helios::Context::getDomainBoundingSphere
void getDomainBoundingSphere(helios::vec3 &center, float &radius) const
Get the center and radius of a sphere that bounds all primitives in the domain.
Definition Context.cpp:2101
-
helios::Context::getObjectPointer
CompoundObject * getObjectPointer(uint ObjID) const
Get a pointer to a Compound Object.
Definition Context.cpp:2559
-
helios::Context::getPrimitiveColorRGBA
helios::RGBAcolor getPrimitiveColorRGBA(uint UUID) const
Method to return the diffuse color of a Primitive with transparency.
Definition Context.cpp:7012
-
helios::Context::getPrimitiveTextureFile
std::string getPrimitiveTextureFile(uint UUID) const
Get the path to texture map file for primitive. If primitive does not have a texture map,...
Definition Context.cpp:7036
-
helios::Context::getPrimitiveTextureUV
std::vector< vec2 > getPrimitiveTextureUV(uint UUID) const
Get u-v texture coordinates at primitive vertices.
Definition Context.cpp:7052
-
helios::Context::getPrimitiveType
PrimitiveType getPrimitiveType(uint UUID) const
Method to get the Primitive type.
Definition Context.cpp:6861
+
helios::Context::getDomainBoundingSphere
void getDomainBoundingSphere(helios::vec3 &center, float &radius) const
Get the center and radius of a sphere that bounds all primitives in the domain.
Definition Context.cpp:2096
+
helios::Context::getObjectPointer
CompoundObject * getObjectPointer(uint ObjID) const
Get a pointer to a Compound Object.
Definition Context.cpp:2554
+
helios::Context::getPrimitiveColorRGBA
helios::RGBAcolor getPrimitiveColorRGBA(uint UUID) const
Method to return the diffuse color of a Primitive with transparency.
Definition Context.cpp:7079
+
helios::Context::getPrimitiveTextureFile
std::string getPrimitiveTextureFile(uint UUID) const
Get the path to texture map file for primitive. If primitive does not have a texture map,...
Definition Context.cpp:7103
+
helios::Context::getPrimitiveTextureUV
std::vector< vec2 > getPrimitiveTextureUV(uint UUID) const
Get u-v texture coordinates at primitive vertices.
Definition Context.cpp:7119
+
helios::Context::getPrimitiveType
PrimitiveType getPrimitiveType(uint UUID) const
Method to get the Primitive type.
Definition Context.cpp:6928
helios::Context::setObjectData
void setObjectData(uint objID, const char *label, const int &data)
Add data value (int) associated with a compound object.
Definition Context_data.cpp:2392
helios::Context::doesPrimitiveDataExist
bool doesPrimitiveDataExist(uint UUID, const char *label) const
Check if primitive data 'label' exists.
Definition Context_data.cpp:1169
-
helios::Context::getTime
helios::Time getTime() const
Get the simulation time.
Definition Context.cpp:1169
-
helios::Context::getDomainBoundingBox
void getDomainBoundingBox(helios::vec2 &xbounds, helios::vec2 &ybounds, helios::vec2 &zbounds) const
Get a box that bounds all primitives in the domain.
Definition Context.cpp:2031
-
helios::Context::getDate
helios::Date getDate() const
Get simulation date.
Definition Context.cpp:1102
-
helios::Context::getAllUUIDs
std::vector< uint > getAllUUIDs() const
Get all primitive UUIDs currently in the Context.
Definition Context.cpp:1758
-
helios::Context::doesObjectExist
bool doesObjectExist(uint ObjID) const
Check whether Compound Object exists in the Context.
Definition Context.cpp:2570
+
helios::Context::getTime
helios::Time getTime() const
Get the simulation time.
Definition Context.cpp:1164
+
helios::Context::getDomainBoundingBox
void getDomainBoundingBox(helios::vec2 &xbounds, helios::vec2 &ybounds, helios::vec2 &zbounds) const
Get a box that bounds all primitives in the domain.
Definition Context.cpp:2026
+
helios::Context::getDate
helios::Date getDate() const
Get simulation date.
Definition Context.cpp:1097
+
helios::Context::getAllUUIDs
std::vector< uint > getAllUUIDs() const
Get all primitive UUIDs currently in the Context.
Definition Context.cpp:1753
+
helios::Context::doesObjectExist
bool doesObjectExist(uint ObjID) const
Check whether Compound Object exists in the Context.
Definition Context.cpp:2565
helios::Context::getPrimitiveDataType
HeliosDataType getPrimitiveDataType(uint UUID, const char *label) const
Get the Helios data type of primitive data.
Definition Context_data.cpp:1155
-
helios::Context::isPrimitiveTextureColorOverridden
bool isPrimitiveTextureColorOverridden(uint UUID) const
Check if color of texture map is overridden by the diffuse R-G-B color of the primitive.
Definition Context.cpp:7094
+
helios::Context::isPrimitiveTextureColorOverridden
bool isPrimitiveTextureColorOverridden(uint UUID) const
Check if color of texture map is overridden by the diffuse R-G-B color of the primitive.
Definition Context.cpp:7161
helios::Context::setPrimitiveData
void setPrimitiveData(const uint &UUID, const char *label, const int &data)
Add data value (int) associated with a primitive element.
Definition Context_data.cpp:655
-
helios::Context::doesPrimitiveExist
bool doesPrimitiveExist(uint UUID) const
Check if primitive exists for a given UUID.
Definition Context.cpp:1654
-
helios::Context::getPrimitiveVertices
std::vector< helios::vec3 > getPrimitiveVertices(uint UUID) const
Method to return the (x,y,z) coordinates of the vertices of a Primitive.
Definition Context.cpp:6999
+
helios::Context::doesPrimitiveExist
bool doesPrimitiveExist(uint UUID) const
Check if primitive exists for a given UUID.
Definition Context.cpp:1649
+
helios::Context::getPrimitiveVertices
std::vector< helios::vec3 > getPrimitiveVertices(uint UUID) const
Method to return the (x,y,z) coordinates of the vertices of a Primitive.
Definition Context.cpp:7066
helios::Context::getObjectDataType
HeliosDataType getObjectDataType(uint objID, const char *label) const
Get the Helios data type of primitive data.
Definition Context_data.cpp:2894
helios::rotatePointAboutLine
vec3 rotatePointAboutLine(const vec3 &point, const vec3 &line_base, const vec3 &line_direction, float theta)
Rotate a 3D vector about an arbitrary line.
Definition global.cpp:140
helios::helios_runtime_error
void helios_runtime_error(const std::string &error_message)
Function to throw a runtime error.
Definition global.cpp:29
@@ -4809,12 +4809,12 @@
helios::sphere2cart
vec3 sphere2cart(const SphericalCoord &Spherical)
Convert Spherical coordinates to Cartesian coordinates.
Definition global.cpp:617
helios::clamp
anytype clamp(anytype value, anytype min, anytype max)
Clamp value to be within some specified bounds.
Definition global.cpp:973
helios::make_int2
int2 make_int2(int x, int y)
Make an int2 vector from two ints.
Definition helios_vector_types.h:99
-
helios::make_vec2
vec2 make_vec2(float x, float y)
Make a vec2 from two floats.
Definition helios_vector_types.h:432
-
helios::make_RGBAcolor
RGBAcolor make_RGBAcolor(float r, float g, float b, float a)
Make an RGBAcolor vector.
Definition helios_vector_types.h:1130
-
helios::make_RGBcolor
RGBcolor make_RGBcolor(float r, float g, float b)
Make an RGBcolor vector.
Definition helios_vector_types.h:951
-
helios::make_vec3
vec3 make_vec3(float x, float y, float z)
Make a vec3 from three floats.
Definition helios_vector_types.h:587
-
helios::cross
vec3 cross(const vec3 &a, const vec3 &b)
Cross product of two vec3 vectors.
Definition helios_vector_types.h:597
-
helios::make_SphericalCoord
SphericalCoord make_SphericalCoord(float elevation_radians, float azimuth_radians)
Make a SphericalCoord by specifying elevation and azimuth.
Definition helios_vector_types.h:1536
+
helios::make_vec2
vec2 make_vec2(float x, float y)
Make a vec2 from two floats.
Definition helios_vector_types.h:433
+
helios::make_RGBAcolor
RGBAcolor make_RGBAcolor(float r, float g, float b, float a)
Make an RGBAcolor vector.
Definition helios_vector_types.h:1133
+
helios::make_RGBcolor
RGBcolor make_RGBcolor(float r, float g, float b)
Make an RGBcolor vector.
Definition helios_vector_types.h:954
+
helios::make_vec3
vec3 make_vec3(float x, float y, float z)
Make a vec3 from three floats.
Definition helios_vector_types.h:589
+
helios::cross
vec3 cross(const vec3 &a, const vec3 &b)
Cross product of two vec3 vectors.
Definition helios_vector_types.h:599
+
helios::make_SphericalCoord
SphericalCoord make_SphericalCoord(float elevation_radians, float azimuth_radians)
Make a SphericalCoord by specifying elevation and azimuth.
Definition helios_vector_types.h:1539
Colormap
RGB color map.
Definition Visualizer.h:159
Shader::initialize
void initialize(const char *vertex_shader_file, const char *fragment_shader_file)
Initialize the shader.
Definition Visualizer.cpp:3906
Shader::enableTextureMasks
void enableTextureMasks() const
Enable texture masks and color fragments by interpolating vertex colors.
Definition Visualizer.cpp:4262
@@ -4827,27 +4827,27 @@
Shader::setDepthBiasMatrix
void setDepthBiasMatrix(const glm::mat4 &matrix)
Set the depth bias matrix for shadows.
Definition Visualizer.cpp:4281
Shader::setTextureMap
void setTextureMap(const char *texture_file, uint &textureID, helios::int2 &texture_size)
Color fragments using an RGB texture map.
Definition Visualizer.cpp:4063
Shader::setTransformationMatrix
void setTransformationMatrix(const glm::mat4 &matrix)
Set the shader transformation matrix, i.e., the Affine transformation applied to all vertices.
Definition Visualizer.cpp:4277
- -
helios::Date::month
int month
Month of year.
Definition helios_vector_types.h:1171
-
helios::Date::day
int day
Day of month.
Definition helios_vector_types.h:1169
-
helios::Date::year
int year
Year in YYYY format.
Definition helios_vector_types.h:1173
-
helios::RGBAcolor
R-G-B-A color vector.
Definition helios_vector_types.h:1021
-
helios::RGBAcolor::r
float r
Red color component.
Definition helios_vector_types.h:1026
-
helios::RGBAcolor::a
float a
Alpha (transparency) component.
Definition helios_vector_types.h:1035
-
helios::RGBAcolor::b
float b
Blue color component.
Definition helios_vector_types.h:1032
-
helios::RGBAcolor::g
float g
Green color component.
Definition helios_vector_types.h:1029
-
helios::RGBcolor
R-G-B color vector.
Definition helios_vector_types.h:841
-
helios::RGBcolor::b
float b
Blue color component.
Definition helios_vector_types.h:852
-
helios::RGBcolor::r
float r
Red color component.
Definition helios_vector_types.h:846
-
helios::RGBcolor::g
float g
Green color component.
Definition helios_vector_types.h:849
-
helios::SphericalCoord
Vector of spherical coordinates (elevation,azimuth)
Definition helios_vector_types.h:1468
- -
helios::SphericalCoord::elevation
const float & elevation
Elevation angle (radians)
Definition helios_vector_types.h:1482
-
helios::SphericalCoord::azimuth
float azimuth
Azimuthal angle (radians)
Definition helios_vector_types.h:1489
- -
helios::Time::second
int second
Second of minute.
Definition helios_vector_types.h:1352
-
helios::Time::hour
int hour
Hour of day.
Definition helios_vector_types.h:1356
-
helios::Time::minute
int minute
Minute of hour.
Definition helios_vector_types.h:1354
+ +
helios::Date::month
int month
Month of year.
Definition helios_vector_types.h:1174
+
helios::Date::day
int day
Day of month.
Definition helios_vector_types.h:1172
+
helios::Date::year
int year
Year in YYYY format.
Definition helios_vector_types.h:1176
+
helios::RGBAcolor
R-G-B-A color vector.
Definition helios_vector_types.h:1024
+
helios::RGBAcolor::r
float r
Red color component.
Definition helios_vector_types.h:1029
+
helios::RGBAcolor::a
float a
Alpha (transparency) component.
Definition helios_vector_types.h:1038
+
helios::RGBAcolor::b
float b
Blue color component.
Definition helios_vector_types.h:1035
+
helios::RGBAcolor::g
float g
Green color component.
Definition helios_vector_types.h:1032
+
helios::RGBcolor
R-G-B color vector.
Definition helios_vector_types.h:844
+
helios::RGBcolor::b
float b
Blue color component.
Definition helios_vector_types.h:855
+
helios::RGBcolor::r
float r
Red color component.
Definition helios_vector_types.h:849
+
helios::RGBcolor::g
float g
Green color component.
Definition helios_vector_types.h:852
+
helios::SphericalCoord
Vector of spherical coordinates (elevation,azimuth)
Definition helios_vector_types.h:1471
+ +
helios::SphericalCoord::elevation
const float & elevation
Elevation angle (radians)
Definition helios_vector_types.h:1485
+
helios::SphericalCoord::azimuth
float azimuth
Azimuthal angle (radians)
Definition helios_vector_types.h:1492
+ +
helios::Time::second
int second
Second of minute.
Definition helios_vector_types.h:1355
+
helios::Time::hour
int hour
Hour of day.
Definition helios_vector_types.h:1359
+
helios::Time::minute
int minute
Minute of hour.
Definition helios_vector_types.h:1357
helios::int2
Vector of two elements of type 'int'.
Definition helios_vector_types.h:44
helios::int2::y
int y
Second element in vector.
Definition helios_vector_types.h:50
helios::int2::x
int x
First element in vector.
Definition helios_vector_types.h:48
@@ -4858,12 +4858,12 @@
helios::vec2
Vector of two elements of type 'float'.
Definition helios_vector_types.h:346
helios::vec2::x
float x
First element in vector.
Definition helios_vector_types.h:350
helios::vec2::y
float y
Second element in vector.
Definition helios_vector_types.h:352
-
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:502
-
helios::vec3::x
float x
First element in vector.
Definition helios_vector_types.h:506
-
helios::vec3::z
float z
Third element in vector.
Definition helios_vector_types.h:510
-
helios::vec3::normalize
void normalize()
Normalize vector components such that the magnitude is unity.
Definition helios_vector_types.h:513
-
helios::vec3::y
float y
Second element in vector.
Definition helios_vector_types.h:508
-
helios::vec3::magnitude
float magnitude() const
Compute the vector magnitude.
Definition helios_vector_types.h:524
+
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:503
+
helios::vec3::normalize
vec3 normalize()
Normalize vector components such that the magnitude is unity.
Definition helios_vector_types.h:514
+
helios::vec3::x
float x
First element in vector.
Definition helios_vector_types.h:507
+
helios::vec3::z
float z
Third element in vector.
Definition helios_vector_types.h:511
+
helios::vec3::y
float y
Second element in vector.
Definition helios_vector_types.h:509
+
helios::vec3::magnitude
float magnitude() const
Compute the vector magnitude.
Definition helios_vector_types.h:526
my_error_mgr
Definition Visualizer.cpp:42
diff --git a/doc/html/_visualizer_8h.html b/doc/html/_visualizer_8h.html index 0f4a89462..6b0f9783b 100644 --- a/doc/html/_visualizer_8h.html +++ b/doc/html/_visualizer_8h.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
diff --git a/doc/html/_visualizer_8h_source.html b/doc/html/_visualizer_8h_source.html index 960ad958c..b17efa671 100644 --- a/doc/html/_visualizer_8h_source.html +++ b/doc/html/_visualizer_8h_source.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
@@ -785,7 +785,7 @@
Visualizer::getDomainBoundingBox
void getDomainBoundingBox(helios::vec2 &xbounds, helios::vec2 &ybounds, helios::vec2 &zbounds) const
Get a box that bounds all primitives in the domain.
Definition Visualizer.cpp:798
Visualizer::setLightingModel
void setLightingModel(LightingModel lightingmodel)
Set the lighting model for shading of all primitives.
Definition Visualizer.cpp:864
helios::Context
Stores the state associated with simulation.
Definition Context.h:1882
-
helios::make_vec2
vec2 make_vec2(float x, float y)
Make a vec2 from two floats.
Definition helios_vector_types.h:432
+
helios::make_vec2
vec2 make_vec2(float x, float y)
Make a vec2 from two floats.
Definition helios_vector_types.h:433
Colormap
RGB color map.
Definition Visualizer.h:159
Shader
OpenGL Shader data structure.
Definition Visualizer.h:78
Shader::initialize
void initialize(const char *vertex_shader_file, const char *fragment_shader_file)
Initialize the shader.
Definition Visualizer.cpp:3906
@@ -799,16 +799,16 @@
Shader::setDepthBiasMatrix
void setDepthBiasMatrix(const glm::mat4 &matrix)
Set the depth bias matrix for shadows.
Definition Visualizer.cpp:4281
Shader::setTextureMap
void setTextureMap(const char *texture_file, uint &textureID, helios::int2 &texture_size)
Color fragments using an RGB texture map.
Definition Visualizer.cpp:4063
Shader::setTransformationMatrix
void setTransformationMatrix(const glm::mat4 &matrix)
Set the shader transformation matrix, i.e., the Affine transformation applied to all vertices.
Definition Visualizer.cpp:4277
-
helios::RGBAcolor
R-G-B-A color vector.
Definition helios_vector_types.h:1021
-
helios::RGBcolor
R-G-B color vector.
Definition helios_vector_types.h:841
-
helios::RGBcolor::b
float b
Blue color component.
Definition helios_vector_types.h:852
-
helios::RGBcolor::r
float r
Red color component.
Definition helios_vector_types.h:846
-
helios::RGBcolor::g
float g
Green color component.
Definition helios_vector_types.h:849
-
helios::SphericalCoord
Vector of spherical coordinates (elevation,azimuth)
Definition helios_vector_types.h:1468
+
helios::RGBAcolor
R-G-B-A color vector.
Definition helios_vector_types.h:1024
+
helios::RGBcolor
R-G-B color vector.
Definition helios_vector_types.h:844
+
helios::RGBcolor::b
float b
Blue color component.
Definition helios_vector_types.h:855
+
helios::RGBcolor::r
float r
Red color component.
Definition helios_vector_types.h:849
+
helios::RGBcolor::g
float g
Green color component.
Definition helios_vector_types.h:852
+
helios::SphericalCoord
Vector of spherical coordinates (elevation,azimuth)
Definition helios_vector_types.h:1471
helios::int2
Vector of two elements of type 'int'.
Definition helios_vector_types.h:44
helios::int3
Vector of three elements of type 'int'.
Definition helios_vector_types.h:146
helios::vec2
Vector of two elements of type 'float'.
Definition helios_vector_types.h:346
-
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:502
+
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:503
diff --git a/doc/html/_visualizer_doc.html b/doc/html/_visualizer_doc.html index ea113fd1f..ce9f3fcc0 100644 --- a/doc/html/_visualizer_doc.html +++ b/doc/html/_visualizer_doc.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
diff --git a/doc/html/_voxel_intersection_8cpp.html b/doc/html/_voxel_intersection_8cpp.html index 044aadeea..2a407fad1 100644 --- a/doc/html/_voxel_intersection_8cpp.html +++ b/doc/html/_voxel_intersection_8cpp.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
diff --git a/doc/html/_voxel_intersection_8cpp_source.html b/doc/html/_voxel_intersection_8cpp_source.html index 1bce2fa0f..faf6c3edd 100644 --- a/doc/html/_voxel_intersection_8cpp_source.html +++ b/doc/html/_voxel_intersection_8cpp_source.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
@@ -592,11 +592,11 @@
502 }
503
504 helios::vec3 face_normal = cross(voxel_face_vertices.at(1) - voxel_face_vertices.at(0), voxel_face_vertices.at(2) - voxel_face_vertices.at(1));
-
505 face_normal.normalize();
+
505 face_normal.normalize();
506
507 std::vector<helios::vec3> primitive_vertices = context->getPrimitiveVertices(UUID);
508 helios::vec3 primitive_normal = context->getPrimitiveNormal(UUID);
-
509 primitive_normal.normalize();
+
509 primitive_normal.normalize();
510
511 helios::RGBAcolor primitive_color = context->getPrimitiveColorRGBA(UUID);
512
@@ -1780,7 +1780,7 @@
1693 for(uint aa=0;aa<resulting_UUIDs.size();aa++)
1694 {
1695 helios::vec3 this_normal = context->getPrimitiveNormal(resulting_UUIDs.at(aa));
-
1696 this_normal.normalize();
+
1696 this_normal.normalize();
1697 if(!approxSame(primitive_normal.x, this_normal.x, absTol, relTol) || !approxSame(primitive_normal.y, this_normal.y, absTol, relTol) || !approxSame(primitive_normal.z, this_normal.z, absTol, relTol) )
1698 {
1699 std::cout << "WARNING: UUID " << resulting_UUIDs.at(aa) << " normal " << this_normal << " does not match original normal " << primitive_normal << std::endl;
@@ -2174,36 +2174,36 @@
VoxelIntersection::interpolate_texture_UV_to_slice_point
helios::vec2 interpolate_texture_UV_to_slice_point(helios::vec3 p1, helios::vec2 uv1, helios::vec3 p2, helios::vec2 uv2, helios::vec3 ps)
find the uv coordinate of a slice point
Definition VoxelIntersection.cpp:1980
helios::Context
Stores the state associated with simulation.
Definition Context.h:1882
helios::Context::copyPrimitiveData
void copyPrimitiveData(uint sourceUUID, uint destinationUUID)
copy all primitive data from one primitive to another
Definition Context_data.cpp:1192
-
helios::Context::getPrimitiveArea
float getPrimitiveArea(uint UUID) const
Method to return the surface area of a Primitive.
Definition Context.cpp:6930
+
helios::Context::getPrimitiveArea
float getPrimitiveArea(uint UUID) const
Method to return the surface area of a Primitive.
Definition Context.cpp:6997
helios::Context::getPrimitiveData
void getPrimitiveData(uint UUID, const char *label, int &data) const
Get data associated with a primitive element.
Definition Context_data.cpp:1001
-
helios::Context::deletePrimitive
void deletePrimitive(uint UUID)
Delete a single primitive from the context.
Definition Context.cpp:1531
-
helios::Context::getPrimitiveParentObjectID
uint getPrimitiveParentObjectID(uint UUID) const
Method to return the ID of the parent object the primitive belongs to (default is object 0)
Definition Context.cpp:6894
-
helios::Context::getPrimitiveColorRGBA
helios::RGBAcolor getPrimitiveColorRGBA(uint UUID) const
Method to return the diffuse color of a Primitive with transparency.
Definition Context.cpp:7012
-
helios::Context::getPrimitiveTextureFile
std::string getPrimitiveTextureFile(uint UUID) const
Get the path to texture map file for primitive. If primitive does not have a texture map,...
Definition Context.cpp:7036
-
helios::Context::getPrimitiveTextureUV
std::vector< vec2 > getPrimitiveTextureUV(uint UUID) const
Get u-v texture coordinates at primitive vertices.
Definition Context.cpp:7052
-
helios::Context::setPrimitiveParentObjectID
void setPrimitiveParentObjectID(uint UUID, uint objID)
Method to set the ID of the parent object the primitive belongs to (default is object 0)
Definition Context.cpp:6865
-
helios::Context::getObjectType
helios::ObjectType getObjectType(uint ObjID) const
Get an enumeration specifying the type of the object.
Definition Context.cpp:2925
-
helios::Context::overridePrimitiveTextureColor
void overridePrimitiveTextureColor(uint UUID)
Override the color in the texture map for all primitives in the Compound Object, in which case the pr...
Definition Context.cpp:7074
-
helios::Context::getAllUUIDs
std::vector< uint > getAllUUIDs() const
Get all primitive UUIDs currently in the Context.
Definition Context.cpp:1758
-
helios::Context::isPrimitiveTextureColorOverridden
bool isPrimitiveTextureColorOverridden(uint UUID) const
Check if color of texture map is overridden by the diffuse R-G-B color of the primitive.
Definition Context.cpp:7094
-
helios::Context::getPrimitiveNormal
helios::vec3 getPrimitiveNormal(uint UUID) const
Method to return the normal vector of a Primitive.
Definition Context.cpp:6981
+
helios::Context::deletePrimitive
void deletePrimitive(uint UUID)
Delete a single primitive from the context.
Definition Context.cpp:1526
+
helios::Context::getPrimitiveParentObjectID
uint getPrimitiveParentObjectID(uint UUID) const
Method to return the ID of the parent object the primitive belongs to (default is object 0)
Definition Context.cpp:6961
+
helios::Context::getPrimitiveColorRGBA
helios::RGBAcolor getPrimitiveColorRGBA(uint UUID) const
Method to return the diffuse color of a Primitive with transparency.
Definition Context.cpp:7079
+
helios::Context::getPrimitiveTextureFile
std::string getPrimitiveTextureFile(uint UUID) const
Get the path to texture map file for primitive. If primitive does not have a texture map,...
Definition Context.cpp:7103
+
helios::Context::getPrimitiveTextureUV
std::vector< vec2 > getPrimitiveTextureUV(uint UUID) const
Get u-v texture coordinates at primitive vertices.
Definition Context.cpp:7119
+
helios::Context::setPrimitiveParentObjectID
void setPrimitiveParentObjectID(uint UUID, uint objID)
Method to set the ID of the parent object the primitive belongs to (default is object 0)
Definition Context.cpp:6932
+
helios::Context::getObjectType
helios::ObjectType getObjectType(uint ObjID) const
Get an enumeration specifying the type of the object.
Definition Context.cpp:2920
+
helios::Context::overridePrimitiveTextureColor
void overridePrimitiveTextureColor(uint UUID)
Override the color in the texture map for all primitives in the Compound Object, in which case the pr...
Definition Context.cpp:7141
+
helios::Context::getAllUUIDs
std::vector< uint > getAllUUIDs() const
Get all primitive UUIDs currently in the Context.
Definition Context.cpp:1753
+
helios::Context::isPrimitiveTextureColorOverridden
bool isPrimitiveTextureColorOverridden(uint UUID) const
Check if color of texture map is overridden by the diffuse R-G-B color of the primitive.
Definition Context.cpp:7161
+
helios::Context::getPrimitiveNormal
helios::vec3 getPrimitiveNormal(uint UUID) const
Method to return the normal vector of a Primitive.
Definition Context.cpp:7048
helios::Context::setPrimitiveData
void setPrimitiveData(const uint &UUID, const char *label, const int &data)
Add data value (int) associated with a primitive element.
Definition Context_data.cpp:655
-
helios::Context::doesPrimitiveExist
bool doesPrimitiveExist(uint UUID) const
Check if primitive exists for a given UUID.
Definition Context.cpp:1654
-
helios::Context::getPrimitiveVertices
std::vector< helios::vec3 > getPrimitiveVertices(uint UUID) const
Method to return the (x,y,z) coordinates of the vertices of a Primitive.
Definition Context.cpp:6999
-
helios::Context::cropDomain
void cropDomain(std::vector< uint > &UUIDs, const vec2 &xbounds, const vec2 &ybounds, const vec2 &zbounds)
Crop specified UUIDs such that they lie within some specified axis-aligned box.
Definition Context.cpp:2198
+
helios::Context::doesPrimitiveExist
bool doesPrimitiveExist(uint UUID) const
Check if primitive exists for a given UUID.
Definition Context.cpp:1649
+
helios::Context::getPrimitiveVertices
std::vector< helios::vec3 > getPrimitiveVertices(uint UUID) const
Method to return the (x,y,z) coordinates of the vertices of a Primitive.
Definition Context.cpp:7066
+
helios::Context::cropDomain
void cropDomain(std::vector< uint > &UUIDs, const vec2 &xbounds, const vec2 &ybounds, const vec2 &zbounds)
Crop specified UUIDs such that they lie within some specified axis-aligned box.
Definition Context.cpp:2193
helios::Context::sumPrimitiveSurfaceArea
float sumPrimitiveSurfaceArea(const std::vector< uint > &UUIDs) const
Sum the one-sided surface area of a group of primitives.
Definition Context_data.cpp:2202
helios::randu
float randu()
Random number from a uniform distribution between 0 and 1.
Definition global.cpp:223
helios::min
float min(const std::vector< float > &vect)
Minimum value of a vector of floats.
Definition global.cpp:1018
-
helios::Context::addTriangle
uint addTriangle(const helios::vec3 &vertex0, const helios::vec3 &vertex1, const helios::vec3 &vertex2)
Add new Triangle geometric primitive.
Definition Context.cpp:1323
-
helios::Context::addVoxel
uint addVoxel(const helios::vec3 &center, const helios::vec3 &size)
Add new Voxel geometric primitive.
Definition Context.cpp:1367
-
helios::Context::addPatch
uint addPatch()
Add new default Patch geometric primitive, which is centered at the origin (0,0,0),...
Definition Context.cpp:1207
-
helios::make_vec2
vec2 make_vec2(float x, float y)
Make a vec2 from two floats.
Definition helios_vector_types.h:432
+
helios::Context::addTriangle
uint addTriangle(const helios::vec3 &vertex0, const helios::vec3 &vertex1, const helios::vec3 &vertex2)
Add new Triangle geometric primitive.
Definition Context.cpp:1318
+
helios::Context::addVoxel
uint addVoxel(const helios::vec3 &center, const helios::vec3 &size)
Add new Voxel geometric primitive.
Definition Context.cpp:1362
+
helios::Context::addPatch
uint addPatch()
Add new default Patch geometric primitive, which is centered at the origin (0,0,0),...
Definition Context.cpp:1202
+
helios::make_vec2
vec2 make_vec2(float x, float y)
Make a vec2 from two floats.
Definition helios_vector_types.h:433
helios::make_int3
int3 make_int3(int X, int Y, int Z)
Make an int3 vector from three ints.
Definition helios_vector_types.h:198
-
helios::make_vec3
vec3 make_vec3(float x, float y, float z)
Make a vec3 from three floats.
Definition helios_vector_types.h:587
-
helios::cross
vec3 cross(const vec3 &a, const vec3 &b)
Cross product of two vec3 vectors.
Definition helios_vector_types.h:597
-
helios::make_SphericalCoord
SphericalCoord make_SphericalCoord(float elevation_radians, float azimuth_radians)
Make a SphericalCoord by specifying elevation and azimuth.
Definition helios_vector_types.h:1536
-
helios::RGBAcolor
R-G-B-A color vector.
Definition helios_vector_types.h:1021
-
helios::SphericalCoord
Vector of spherical coordinates (elevation,azimuth)
Definition helios_vector_types.h:1468
+
helios::make_vec3
vec3 make_vec3(float x, float y, float z)
Make a vec3 from three floats.
Definition helios_vector_types.h:589
+
helios::cross
vec3 cross(const vec3 &a, const vec3 &b)
Cross product of two vec3 vectors.
Definition helios_vector_types.h:599
+
helios::make_SphericalCoord
SphericalCoord make_SphericalCoord(float elevation_radians, float azimuth_radians)
Make a SphericalCoord by specifying elevation and azimuth.
Definition helios_vector_types.h:1539
+
helios::RGBAcolor
R-G-B-A color vector.
Definition helios_vector_types.h:1024
+
helios::SphericalCoord
Vector of spherical coordinates (elevation,azimuth)
Definition helios_vector_types.h:1471
helios::int3
Vector of three elements of type 'int'.
Definition helios_vector_types.h:146
helios::int3::x
int x
First element in vector.
Definition helios_vector_types.h:150
helios::int3::z
int z
Third element in vector.
Definition helios_vector_types.h:154
@@ -2211,11 +2211,11 @@
helios::vec2
Vector of two elements of type 'float'.
Definition helios_vector_types.h:346
helios::vec2::x
float x
First element in vector.
Definition helios_vector_types.h:350
helios::vec2::y
float y
Second element in vector.
Definition helios_vector_types.h:352
-
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:502
-
helios::vec3::x
float x
First element in vector.
Definition helios_vector_types.h:506
-
helios::vec3::z
float z
Third element in vector.
Definition helios_vector_types.h:510
-
helios::vec3::normalize
void normalize()
Normalize vector components such that the magnitude is unity.
Definition helios_vector_types.h:513
-
helios::vec3::y
float y
Second element in vector.
Definition helios_vector_types.h:508
+
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:503
+
helios::vec3::normalize
vec3 normalize()
Normalize vector components such that the magnitude is unity.
Definition helios_vector_types.h:514
+
helios::vec3::x
float x
First element in vector.
Definition helios_vector_types.h:507
+
helios::vec3::z
float z
Third element in vector.
Definition helios_vector_types.h:511
+
helios::vec3::y
float y
Second element in vector.
Definition helios_vector_types.h:509
diff --git a/doc/html/_voxel_intersection_8cu.html b/doc/html/_voxel_intersection_8cu.html index 4b1adf6e1..af9f2b507 100644 --- a/doc/html/_voxel_intersection_8cu.html +++ b/doc/html/_voxel_intersection_8cu.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
diff --git a/doc/html/_voxel_intersection_8cu_source.html b/doc/html/_voxel_intersection_8cu_source.html index aa570cab0..ba8d4268e 100644 --- a/doc/html/_voxel_intersection_8cu_source.html +++ b/doc/html/_voxel_intersection_8cu_source.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
@@ -466,16 +466,16 @@
VoxelIntersection::calculatePrimitiveVoxelIntersection
void calculatePrimitiveVoxelIntersection(void)
Calculate primitives that reside in all voxels for every primitive in the Context.
Definition VoxelIntersection.cu:220
VoxelIntersection::enableMessages
void enableMessages()
Re-enable output messages.
Definition VoxelIntersection.cu:216
VoxelIntersection::disableMessages
void disableMessages()
Disable output messages (enabled by default)
Definition VoxelIntersection.cu:212
-
helios::Context::getPrimitiveType
PrimitiveType getPrimitiveType(uint UUID) const
Method to get the Primitive type.
Definition Context.cpp:6861
-
helios::Context::getVoxelSize
helios::vec3 getVoxelSize(uint UUID) const
Get the size of a voxel element.
Definition Context.cpp:1736
-
helios::Context::getAllUUIDs
std::vector< uint > getAllUUIDs() const
Get all primitive UUIDs currently in the Context.
Definition Context.cpp:1758
+
helios::Context::getPrimitiveType
PrimitiveType getPrimitiveType(uint UUID) const
Method to get the Primitive type.
Definition Context.cpp:6928
+
helios::Context::getVoxelSize
helios::vec3 getVoxelSize(uint UUID) const
Get the size of a voxel element.
Definition Context.cpp:1731
+
helios::Context::getAllUUIDs
std::vector< uint > getAllUUIDs() const
Get all primitive UUIDs currently in the Context.
Definition Context.cpp:1753
helios::Context::setPrimitiveData
void setPrimitiveData(const uint &UUID, const char *label, const int &data)
Add data value (int) associated with a primitive element.
Definition Context_data.cpp:655
-
helios::Context::getVoxelCenter
helios::vec3 getVoxelCenter(uint UUID) const
Get the Cartesian (x,y,z) center position of a voxel element.
Definition Context.cpp:1745
-
helios::Context::getPrimitiveVertices
std::vector< helios::vec3 > getPrimitiveVertices(uint UUID) const
Method to return the (x,y,z) coordinates of the vertices of a Primitive.
Definition Context.cpp:6999
-
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:502
-
helios::vec3::x
float x
First element in vector.
Definition helios_vector_types.h:506
-
helios::vec3::z
float z
Third element in vector.
Definition helios_vector_types.h:510
-
helios::vec3::y
float y
Second element in vector.
Definition helios_vector_types.h:508
+
helios::Context::getVoxelCenter
helios::vec3 getVoxelCenter(uint UUID) const
Get the Cartesian (x,y,z) center position of a voxel element.
Definition Context.cpp:1740
+
helios::Context::getPrimitiveVertices
std::vector< helios::vec3 > getPrimitiveVertices(uint UUID) const
Method to return the (x,y,z) coordinates of the vertices of a Primitive.
Definition Context.cpp:7066
+
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:503
+
helios::vec3::x
float x
First element in vector.
Definition helios_vector_types.h:507
+
helios::vec3::z
float z
Third element in vector.
Definition helios_vector_types.h:511
+
helios::vec3::y
float y
Second element in vector.
Definition helios_vector_types.h:509
diff --git a/doc/html/_voxel_intersection_8h.html b/doc/html/_voxel_intersection_8h.html index 273d9f983..c8447c853 100644 --- a/doc/html/_voxel_intersection_8h.html +++ b/doc/html/_voxel_intersection_8h.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
diff --git a/doc/html/_voxel_intersection_8h_source.html b/doc/html/_voxel_intersection_8h_source.html index f634d3016..01dce7592 100644 --- a/doc/html/_voxel_intersection_8h_source.html +++ b/doc/html/_voxel_intersection_8h_source.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
@@ -177,7 +177,7 @@
helios::Context
Stores the state associated with simulation.
Definition Context.h:1882
helios::int3
Vector of three elements of type 'int'.
Definition helios_vector_types.h:146
helios::vec2
Vector of two elements of type 'float'.
Definition helios_vector_types.h:346
-
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:502
+
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:503
diff --git a/doc/html/_voxel_intersection_doc.html b/doc/html/_voxel_intersection_doc.html index 696dc9b7f..922599274 100644 --- a/doc/html/_voxel_intersection_doc.html +++ b/doc/html/_voxel_intersection_doc.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
diff --git a/doc/html/_weber_penn_doc.html b/doc/html/_weber_penn_doc.html index edd164a59..3917f308f 100644 --- a/doc/html/_weber_penn_doc.html +++ b/doc/html/_weber_penn_doc.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
diff --git a/doc/html/_weber_penn_tree_8cpp.html b/doc/html/_weber_penn_tree_8cpp.html index 8f341b60a..ac634156a 100644 --- a/doc/html/_weber_penn_tree_8cpp.html +++ b/doc/html/_weber_penn_tree_8cpp.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
diff --git a/doc/html/_weber_penn_tree_8cpp_source.html b/doc/html/_weber_penn_tree_8cpp_source.html index 4ab576854..ab61d4379 100644 --- a/doc/html/_weber_penn_tree_8cpp_source.html +++ b/doc/html/_weber_penn_tree_8cpp_source.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
@@ -260,1345 +260,1405 @@
161 theta = 1e-5;
162 phi = getVariation(2.f*M_PI);
163
-
164 //Region above trunk base
-
165
-
166 if( parameters.BaseSplits > 0 ){ //trunk splits at base
+
164 uint base_splits = parameters.BaseSplits;
+
165 if( base_splits > 0 && parameters.BaseSplitsV > 0 )
+
166 base_splits += static_cast<uint>(round(getVariation(parameters.BaseSplitsV)));
167
-
168 dlength0 = length0*(1.f-parameters.BaseSplitSize)/float(parameters.nCurveRes.at(0));
-
169
-
170 // Length of trunk base
-
171 float base0;
-
172 if( parameters.BaseSplits > 0 ){
-
173 base0 = parameters.BaseSplitSize;
-
174 }else{
-
175 base0 = parameters.BaseSize;
-
176 }
+
168 float base_split_size = parameters.BaseSplitSize;
+
169 if( base_split_size > 0 && parameters.BaseSplitSizeV > 0 )
+
170 base_split_size += getVariation(parameters.BaseSplitSizeV);
+
171
+
172 float base_size = parameters.BaseSize;
+
173 if( base_size > 0 && parameters.BaseSizeV > 0 )
+
174 base_size += getVariation(parameters.BaseSizeV);
+
175
+
176 //Region above trunk base
177
-
178 for( uint i=1; i<base_nodes; i++ ){
+
178 if( base_splits > 0 ){ //trunk splits at base
179
-
180 //nodes.at(i) = nodes.at(i-1) + rotatePoint( make_vec3( 0, 0, length0*(1-parameters.BaseSize)/parameters.nCurveRes.at(0) ), theta, phi );
-
181 nodes.at(i) = nodes.at(i-1) + make_vec3( 0, 0, length0*base0/float(base_nodes) );
-
182
-
183 float y = std::max( 0.f, 1.f-8.f*nodes.at(i).z/length0 );
-
184 float flarez = parameters.Flare*(pow(100.f,y)-1.f)/100.f+1.f;
-
185 radius.at(i) = length0*parameters.Ratio*(1-parameters.nTaper.at(0)*nodes.at(i).z/length0)*flarez;
-
186
-
187 color.at(i) = parameters.WoodColor;
-
188
-
189 }
-
190
-
191 vec3 base_position = nodes.at(base_nodes-1);
-
192
-
193 float offset_child = parameters.BaseSplitSize*length0;
-
194
-
195 float phi_split = 0;//getVariation(2.f*M_PI);
-
196
-
197 for( uint j=0; j<parameters.BaseSplits+1; j++ ){ //looping over clones (splits)
+
180 dlength0 = length0*(1.f-base_split_size)/float(parameters.nCurveRes.at(0));
+
181
+
182 // Length of trunk base
+
183 float base0;
+
184 if( base_splits > 0 ){
+
185 base0 = base_split_size;
+
186 }else{
+
187 base0 = base_size;
+
188 }
+
189
+
190 for( uint i=1; i<base_nodes; i++ ){
+
191
+
192 //nodes.at(i) = nodes.at(i-1) + rotatePoint( make_vec3( 0, 0, length0*(1-parameters.BaseSize)/parameters.nCurveRes.at(0) ), theta, phi );
+
193 nodes.at(i) = nodes.at(i-1) + make_vec3( 0, 0, length0*base0/float(base_nodes) );
+
194
+
195 float y = std::max( 0.f, 1.f-8.f*nodes.at(i).z/length0 );
+
196 float flarez = parameters.Flare*(pow(100.f,y)-1.f)/100.f+1.f;
+
197 radius.at(i) = length0*parameters.Ratio*(1-parameters.nTaper.at(0)*nodes.at(i).z/length0)*flarez;
198
-
199 float angle_split = (parameters.nSplitAngle.at(0)-getVariation(parameters.nSplitAngleV.at(0)))*M_PI/180.f;
+
199 color.at(i) = parameters.WoodColor;
200
-
201 vec3 current_normal = make_vec3(0,0,1);
-
202
-
203 helios::SphericalCoord child_rotation = make_SphericalCoord(angle_split,phi_split);
-
204
-
205 recursiveBranch( parameters, 0, 0, base_position, current_normal, child_rotation, length0-offset_child, radius.at(base_nodes-1), offset_child, origin, scale, ID_leaf_template );
-
206
-
207 //phi_split += (20+0.75*120*pow(getVariation(1),2))*M_PI/180.f;
-
208 phi_split += 2.f*M_PI/float(parameters.BaseSplits+1);
-
209
+
201 }
+
202
+
203 vec3 base_position = nodes.at(base_nodes-1);
+
204
+
205 float offset_child = base_split_size*length0;
+
206
+
207 float phi_split = 0;//getVariation(2.f*M_PI);
+
208
+
209 for( uint j=0; j<base_splits+1; j++ ){ //looping over clones (splits)
210
-
211 }
+
211 float angle_split = (parameters.nSplitAngle.at(0)-getVariation(parameters.nSplitAngleV.at(0)))*M_PI/180.f;
212
-
213 }else{ //trunk does not split at base
+
213 vec3 current_normal = make_vec3(0,0,1);
214
-
215 dlength0 = length0/float(parameters.nCurveRes.at(0));
-
216
-
217 float phi_child = getVariation(2.f*M_PI);
-
218
-
219 // Loop over trunk segments 1-0CurveRes
-
220 for( uint i=1; i<parameters.nCurveRes.at(0); i++ ){
+
215 helios::SphericalCoord child_rotation = make_SphericalCoord(angle_split,phi_split);
+
216
+
217 recursiveBranch( parameters, 0, 0, base_position, current_normal, child_rotation, length0-offset_child, radius.at(base_nodes-1), offset_child, origin, scale, ID_leaf_template, base_size, base_splits );
+
218
+
219 //phi_split += (20+0.75*120*pow(getVariation(1),2))*M_PI/180.f;
+
220 phi_split += 2.f*M_PI/float(base_splits+1);
221
-
222 //---- nodes ----//
-
223
-
224 nodes.at(i) = nodes.at(i-1) + rotatePoint( make_vec3( 0, 0, dlength0 ), theta, phi );
-
225
-
226 vec3 current_normal = nodes.at(i)-nodes.at(i-1);
-
227 current_normal.normalize();
+
222
+
223 }
+
224
+
225 }else{ //trunk does not split at base
+
226
+
227 dlength0 = length0/float(parameters.nCurveRes.at(0));
228
-
229 //---- radius ----//
-
230
-
231 float unit_taper;
-
232 if( parameters.nTaper.at(0)<1 ){
-
233 unit_taper = parameters.nTaper.at(0);
-
234 }else if( parameters.nTaper.at(0)<2 ){
-
235 unit_taper = 2.f-parameters.nTaper.at(0);
-
236 }else{
-
237 unit_taper = 0;
-
238 }
-
239
-
240 //fraction along trunk for lower (i-1) node
-
241 float Zminus = float(i-1)/float(parameters.nCurveRes.at(0)-1);
-
242
-
243 //fraction along trunk for upper (i) node
-
244 float Zplus = float(i)/float(parameters.nCurveRes.at(0)-1);
-
245
-
246 radius.at(i) = length0*parameters.Ratio*parameters.ZScale*(1.f-parameters.nTaper.at(0)*Zplus);
-
247 assert( radius.at(i)>=0 );
-
248
-
249 //---- color -----//
-
250
-
251 color.at(i) = parameters.WoodColor;
-
252
-
253 // --- Branch Recursion ---- //
+
229 float phi_child = getVariation(2.f*M_PI);
+
230
+
231 // Loop over trunk segments 1-0CurveRes
+
232 for( uint i=1; i<parameters.nCurveRes.at(0); i++ ){
+
233
+
234 //---- nodes ----//
+
235
+
236 nodes.at(i) = nodes.at(i-1) + rotatePoint( make_vec3( 0, 0, dlength0 ), theta, phi );
+
237
+
238 vec3 current_normal = nodes.at(i)-nodes.at(i-1);
+
239 current_normal.normalize();
+
240
+
241 //---- radius ----//
+
242
+
243 float unit_taper;
+
244 if( parameters.nTaper.at(0)<1 ){
+
245 unit_taper = parameters.nTaper.at(0);
+
246 }else if( parameters.nTaper.at(0)<2 ){
+
247 unit_taper = 2.f-parameters.nTaper.at(0);
+
248 }else{
+
249 unit_taper = 0;
+
250 }
+
251
+
252 //fraction along trunk for lower (i-1) node
+
253 float Zminus = float(i-1)/float(parameters.nCurveRes.at(0)-1);
254
-
255 if( parameters.Levels>0 && Zplus>=parameters.BaseSize ){
-
256
-
257 for( uint s=0; s<stems_per_segment; s++ ){
-
258
-
259 vec3 base_position = nodes.at(i-1) + (nodes.at(i)-nodes.at(i-1))*float(s+0.5)/float(stems_per_segment);
-
260
-
261 float downangle = (parameters.nDownAngle.at(1)+getVariation(parameters.nDownAngleV.at(1)))*M_PI/180.f;
-
262 helios::SphericalCoord child_rotation = make_SphericalCoord(downangle,phi_child);
-
263
-
264 float radius_parent = radius.at(i-1)+base_position.z/length0*(radius.at(i)-radius.at(i-1));
-
265
-
266 //float offset_child = parameters.BaseSize*length0+(i-2)*dlength0 + dlength0*float(s)/float(stems_per_segment-1);
-
267 float base_nodes = floor(parameters.BaseSize*parameters.nCurveRes.at(0));
-
268 float offset_child = (Zminus-parameters.BaseSize)*length0+float(s+0.5)/float(stems_per_segment-1)*dlength0;
-
269
-
270 phi_child += (parameters.nRotate.at(1)+getVariation(parameters.nRotateV.at(1)))*M_PI/180.f;
-
271
-
272 if( offset_child>0 ){
-
273 recursiveBranch( parameters, 1, 0, base_position, current_normal, child_rotation, length0, radius_parent, offset_child, origin, scale, ID_leaf_template );
-
274 }
+
255 //fraction along trunk for upper (i) node
+
256 float Zplus = float(i)/float(parameters.nCurveRes.at(0)-1);
+
257
+
258 radius.at(i) = length0*parameters.Ratio*parameters.ZScale*(1.f-parameters.nTaper.at(0)*Zplus);
+
259 assert( radius.at(i)>=0 );
+
260
+
261 //---- color -----//
+
262
+
263 color.at(i) = parameters.WoodColor;
+
264
+
265 // --- Branch Recursion ---- //
+
266
+
267 if( parameters.Levels>0 && Zplus>=base_size ){
+
268
+
269 for( uint s=0; s<stems_per_segment; s++ ){
+
270
+
271 vec3 base_position = nodes.at(i-1) + (nodes.at(i)-nodes.at(i-1))*float(s+0.5)/float(stems_per_segment);
+
272
+
273 float downangle = (parameters.nDownAngle.at(1)+getVariation(parameters.nDownAngleV.at(1)))*M_PI/180.f;
+
274 helios::SphericalCoord child_rotation = make_SphericalCoord(downangle,phi_child);
275
-
276 }
-
277 }
-
278
-
279 theta += (-parameters.nCurve.at(0)+getVariation(parameters.nCurveV.at(0)))/float(parameters.nCurveRes.at(0))*M_PI/180.f;
-
280
-
281 }
-
282
-
283 }
-
284
-
285 //shift to origin
-
286 for( uint i=0; i<nodes.size(); i++ ){
-
287 nodes.at(i) = nodes.at(i) + origin;
-
288 }
-
289
-
290 //draw the trunk
-
291 if( strcmp(parameters.WoodFile.c_str(),"none")==0 || parameters.WoodFile.size()==0 ){
-
292 UUID_trunk.back() = context->addTube(trunk_segs,nodes,radius,color);
-
293 }else{
-
294 UUID_trunk.back() = context->addTube(trunk_segs,nodes,radius,parameters.WoodFile.c_str());
+
276 float radius_parent = radius.at(i-1)+base_position.z/length0*(radius.at(i)-radius.at(i-1));
+
277
+
278 //float offset_child = parameters.BaseSize*length0+(i-2)*dlength0 + dlength0*float(s)/float(stems_per_segment-1);
+
279 float base_nodes = floor(base_size*parameters.nCurveRes.at(0));
+
280 float offset_child = (Zminus-base_size)*length0+float(s+0.5)/float(stems_per_segment-1)*dlength0;
+
281
+
282 phi_child += (parameters.nRotate.at(1)+getVariation(parameters.nRotateV.at(1)))*M_PI/180.f;
+
283
+
284 if( offset_child>0 ){
+
285 recursiveBranch( parameters, 1, 0, base_position, current_normal, child_rotation, length0, radius_parent, offset_child, origin, scale, ID_leaf_template, base_size, base_splits );
+
286 }
+
287
+
288 }
+
289 }
+
290
+
291 theta += (-parameters.nCurve.at(0)+getVariation(parameters.nCurveV.at(0)))/float(parameters.nCurveRes.at(0))*M_PI/180.f;
+
292
+
293 }
+
294
295 }
296
-
297 // printf("size of UUID_trunk = %d\n",UUID_trunk.back().size());
-
298 // printf("trunk_segs = %d\n",trunk_segs);
-
299 // printf("tube nodes = %d\n",radius.size());
-
300
-
301 // for( int i=0; i<output_prim_data.size(); i++ ){
-
302 // if( output_prim_data.at(i).compare("branch_radius")==0 ){
-
303 // for( int p=0; p<UUID_trunk.back().size(); p++ ){
-
304 // context->setPrimitiveData(UUID_trunk.back().at(p),"branch_radius",radius.at(c));
-
305 // }
-
306 // }else if( output_prim_data.at(i).compare("element_type")==0 ){
-
307 // context->setPrimitiveData(UUID_trunk.back(),"element_type","trunk");
-
308 // }
-
309 // }
-
310
-
311 //context->deletePrimitive( UUID_leaf_template );
-
312 context->deleteObject( ID_leaf_template );
-
313
-
314 uint flag=1;
-
315 for( size_t i=0; i<UUID_leaf.at(TreeID).size(); i++ ){
-
316 context->setPrimitiveData(UUID_leaf.at(TreeID).at(i),"twosided_flag",HELIOS_TYPE_UINT,1,&flag);
-
317 }
-
318 for( size_t i=0; i<UUID_branch.at(TreeID).size(); i++ ){
-
319 context->setPrimitiveData(UUID_branch.at(TreeID).at(i),"twosided_flag",HELIOS_TYPE_UINT,1,&flag);
-
320 }
-
321 for( size_t i=0; i<UUID_trunk.at(TreeID).size(); i++ ){
-
322 context->setPrimitiveData(UUID_trunk.at(TreeID).at(i),"twosided_flag",HELIOS_TYPE_UINT,1,&flag);
-
323 }
-
324
-
325 return TreeID;
-
326
-
327}
-
-
328
-
329void WeberPennTree::recursiveBranch( WeberPennTreeParameters parameters, uint n, uint seg_start, helios::vec3 base_position, helios::vec3 parent_normal, helios::SphericalCoord child_rotation, float length_parent, float radius_parent, float offset_child, helios::vec3 origin, float scale, const uint leaf_template ){
-
330
-
331 if( n<parameters.Levels ){ //Branches
-
332
-
333 if( n>=parameters.nCurveRes.size() ){
-
334 n = parameters.Levels-1;
-
335 }
+
297 //shift to origin
+
298 for( uint i=0; i<nodes.size(); i++ ){
+
299 nodes.at(i) = nodes.at(i) + origin;
+
300 }
+
301
+
302 //draw the trunk
+
303 if( strcmp(parameters.WoodFile.c_str(),"none")==0 || parameters.WoodFile.size()==0 ){
+
304 UUID_trunk.back() = context->addTube(trunk_segs,nodes,radius,color);
+
305 }else{
+
306 UUID_trunk.back() = context->addTube(trunk_segs,nodes,radius,parameters.WoodFile.c_str());
+
307 }
+
308
+
309 // printf("size of UUID_trunk = %d\n",UUID_trunk.back().size());
+
310 // printf("trunk_segs = %d\n",trunk_segs);
+
311 // printf("tube nodes = %d\n",radius.size());
+
312
+
313 // for( int i=0; i<output_prim_data.size(); i++ ){
+
314 // if( output_prim_data.at(i).compare("branch_radius")==0 ){
+
315 // for( int p=0; p<UUID_trunk.back().size(); p++ ){
+
316 // context->setPrimitiveData(UUID_trunk.back().at(p),"branch_radius",radius.at(c));
+
317 // }
+
318 // }else if( output_prim_data.at(i).compare("element_type")==0 ){
+
319 // context->setPrimitiveData(UUID_trunk.back(),"element_type","trunk");
+
320 // }
+
321 // }
+
322
+
323 //context->deletePrimitive( UUID_leaf_template );
+
324 context->deleteObject( ID_leaf_template );
+
325
+
326 uint flag=1;
+
327 for( size_t i=0; i<UUID_leaf.at(TreeID).size(); i++ ){
+
328 context->setPrimitiveData(UUID_leaf.at(TreeID).at(i),"twosided_flag",HELIOS_TYPE_UINT,1,&flag);
+
329 }
+
330 for( size_t i=0; i<UUID_branch.at(TreeID).size(); i++ ){
+
331 context->setPrimitiveData(UUID_branch.at(TreeID).at(i),"twosided_flag",HELIOS_TYPE_UINT,1,&flag);
+
332 }
+
333 for( size_t i=0; i<UUID_trunk.at(TreeID).size(); i++ ){
+
334 context->setPrimitiveData(UUID_trunk.at(TreeID).at(i),"twosided_flag",HELIOS_TYPE_UINT,1,&flag);
+
335 }
336
-
337 // Vectors to be passed to "addTube()"
-
338 std::vector<vec3> nodes; //(x,y,z) coordinates of nodes along the branch
-
339 std::vector<float> radius; //radius of the branch at each node location
-
340 std::vector<RGBcolor> color; //color of the branch at each node location
-
341
-
342 if( parameters.nSegSplits.at(n)==0 ){
-
343 nodes.resize(parameters.nCurveRes.at(n)+1);
-
344 radius.resize(parameters.nCurveRes.at(n)+1);
-
345 color.resize(parameters.nCurveRes.at(n)+1);
-
346 }else{
-
347 nodes.resize(2);
-
348 radius.resize(2);
-
349 color.resize(2);
-
350 }
-
351
-
352 // Ratio of position along parent
-
353 float ratio;
-
354 if( n<=1 ){
-
355 ratio = (length_parent*(1-parameters.BaseSize)-offset_child)/(length_parent*(1-parameters.BaseSize));
-
356 }else{
-
357 ratio = (length_parent-offset_child)/length_parent;
-
358 }
-
359
-
360
-
361 if( ratio<0 ){
-
362 ratio = 0;
-
363 }else if(ratio>1){
-
364 ratio = 1;
-
365 }
-
366
-
367 // Maximum length of the branch
-
368 float length_childmax = parameters.nLength.at(n)+getVariation(parameters.nLengthV.at(n));
-
369
-
370 if( length_childmax<0 ){
-
371 length_childmax = parameters.nLength.at(n);
-
372 }
-
373
-
374 // Length of the branch
-
375 float length_child;
-
376 if( n==0 ){ //trunk splits
-
377 length_child = length_parent*length_childmax;
-
378 }else if( n<=1 ){ //first level of branches
-
379 length_child = length_parent*length_childmax*ShapeRatio(parameters.Shape,ratio);
-
380 }else{
-
381 length_child = length_childmax*(length_parent-0.6*offset_child);
-
382 }
-
383
-
384 assert( length_child>=0 );
-
385
-
386 // Length of each branch segment
-
387 float dlength_child = length_child/float(parameters.nCurveRes.at(n));
-
388
-
389 assert( dlength_child>=0 );
-
390
-
391 // Total number of stems along branch
-
392 uint stems;
-
393 if( n==parameters.Levels-1 ){ //leaves
-
394 //stems = 2.f*round(parameters.Leaves*ShapeRatio(4,ratio));
-
395 //-- testing here --//
-
396 stems = round(10.f*parameters.Leaves*length_child/parameters.Scale);
-
397 }else{ //branches
-
398 stems = round(parameters.nBranches.at(n+1)*(1-0.5*ratio));
-
399 //stems = round(1.5*parameters.nBranches.at(n+1)*(1.f+ratio)*length_child/parameters.Scale);
-
400 }
-
401
-
402 // Number of stems per branch segment
-
403 uint stems_per_segment = round(float(stems)/float(parameters.nCurveRes.at(n)));
-
404
-
405 // First node
-
406 if( n==0 ){
-
407 radius.at(0) = 0.8*radius_parent;
-
408 }else if( seg_start==0 ){
-
409 radius.at(0) = radius_parent*pow(length_child/length_parent,parameters.RatioPower);
-
410 }else{
-
411 radius.at(0) = radius_parent*pow(length_child/length_parent,parameters.RatioPower)*(1-parameters.nTaper.at(n)*float(seg_start)/float(parameters.nCurveRes.at(n)));
+
337 return TreeID;
+
338
+
339}
+
+
340
+
341void WeberPennTree::recursiveBranch( WeberPennTreeParameters parameters, uint n, uint seg_start, helios::vec3 base_position, helios::vec3 parent_normal, helios::SphericalCoord child_rotation, float length_parent, float radius_parent, float offset_child, helios::vec3 origin, float scale, const uint leaf_template, float base_size, uint base_splits ){
+
342
+
343 if( n<parameters.Levels ){ //Branches
+
344
+
345 if( n>=parameters.nCurveRes.size() ){
+
346 n = parameters.Levels-1;
+
347 }
+
348
+
349 // Vectors to be passed to "addTube()"
+
350 std::vector<vec3> nodes; //(x,y,z) coordinates of nodes along the branch
+
351 std::vector<float> radius; //radius of the branch at each node location
+
352 std::vector<RGBcolor> color; //color of the branch at each node location
+
353
+
354 if( parameters.nSegSplits.at(n)==0 ){
+
355 nodes.resize(parameters.nCurveRes.at(n)+1);
+
356 radius.resize(parameters.nCurveRes.at(n)+1);
+
357 color.resize(parameters.nCurveRes.at(n)+1);
+
358 }else{
+
359 nodes.resize(2);
+
360 radius.resize(2);
+
361 color.resize(2);
+
362 }
+
363
+
364 // Ratio of position along parent
+
365 float ratio;
+
366 if( n<=1 ){
+
367 ratio = (length_parent*(1-base_size)-offset_child)/(length_parent*(1-base_size));
+
368 }else{
+
369 ratio = (length_parent-offset_child)/length_parent;
+
370 }
+
371
+
372
+
373 if( ratio<0 ){
+
374 ratio = 0;
+
375 }else if(ratio>1){
+
376 ratio = 1;
+
377 }
+
378
+
379 // Maximum length of the branch
+
380 float length_childmax = parameters.nLength.at(n)+getVariation(parameters.nLengthV.at(n));
+
381
+
382 if( length_childmax<0 ){
+
383 length_childmax = parameters.nLength.at(n);
+
384 }
+
385
+
386 // Length of the branch
+
387 float length_child;
+
388 if( n==0 ){ //trunk splits
+
389 length_child = length_parent*length_childmax;
+
390 }else if( n<=1 ){ //first level of branches
+
391 length_child = length_parent*length_childmax*ShapeRatio(parameters.Shape,ratio);
+
392 }else{
+
393 length_child = length_childmax*(length_parent-0.6*offset_child);
+
394 }
+
395
+
396 assert( length_child>=0 );
+
397
+
398 // Length of each branch segment
+
399 float dlength_child = length_child/float(parameters.nCurveRes.at(n));
+
400
+
401 assert( dlength_child>=0 );
+
402
+
403 // Total number of stems along branch
+
404 uint stems;
+
405 if( n==parameters.Levels-1 ){ //leaves
+
406 //stems = 2.f*round(parameters.Leaves*ShapeRatio(4,ratio));
+
407 //-- testing here --//
+
408 stems = round(10.f*parameters.Leaves*length_child/parameters.Scale);
+
409 }else{ //branches
+
410 stems = round(parameters.nBranches.at(n+1)*(1-0.5*ratio));
+
411 //stems = round(1.5*parameters.nBranches.at(n+1)*(1.f+ratio)*length_child/parameters.Scale);
412 }
-
413 nodes.at(0) = base_position;
-
414 color.at(0) = parameters.WoodColor;
-
415
-
416 SphericalCoord parent_rotation = cart2sphere(parent_normal);
-
417
-
418 float phi = getVariation(2.f*M_PI);
-
419 float phi_child = getVariation(2.f*M_PI);
-
420
-
421 // Loop over branch segments 1-0CurveRes
-
422 for( uint i=seg_start+1; i<parameters.nCurveRes.at(n)+1; i++ ){
-
423
-
424 //---- radius ----//
-
425
-
426 float unit_taper;
-
427 if( parameters.nTaper.at(n)<1 ){
-
428 unit_taper = parameters.nTaper.at(n);
-
429 }else if( parameters.nTaper.at(n)<2 ){
-
430 unit_taper = 2.f-parameters.nTaper.at(n);
-
431 }else{
-
432 unit_taper = 0;
-
433 }
-
434
-
435 float Z = float(i)/float(parameters.nCurveRes.at(n));
-
436
-
437 //NOTE: STill not sure here if radius calculation is coming right when we have splits
-
438 radius.at(i-seg_start) = radius.at(i-seg_start-1)*(1-parameters.nTaper.at(n)*Z);
-
439
-
440 //---- nodes ----//
-
441
-
442 vec3 child_normal = sphere2cart(make_SphericalCoord(parent_rotation.elevation-child_rotation.elevation,parent_rotation.azimuth));
-
443 child_normal.normalize();
-
444
-
445 child_normal = rotatePointAboutLine( child_normal, make_vec3(0,0,0), parent_normal, child_rotation.azimuth );
-
446
-
447 nodes.at(i-seg_start) = nodes.at(i-seg_start-1) + child_normal*dlength_child;
-
448
-
449 //---- color -----//
-
450
-
451 color.at(i-seg_start) = parameters.WoodColor;
-
452
-
453 // ---Branch recursion ---- //
-
454
-
455 for( uint s=0; s<stems_per_segment; s++ ){
+
413
+
414 // Number of stems per branch segment
+
415 uint stems_per_segment = round(float(stems)/float(parameters.nCurveRes.at(n)));
+
416
+
417 // First node
+
418 if( n==0 ){
+
419 radius.at(0) = 0.8*radius_parent;
+
420 }else if( seg_start==0 ){
+
421 radius.at(0) = radius_parent*pow(length_child/length_parent,parameters.RatioPower);
+
422 }else{
+
423 radius.at(0) = radius_parent*pow(length_child/length_parent,parameters.RatioPower)*(1-parameters.nTaper.at(n)*float(seg_start)/float(parameters.nCurveRes.at(n)));
+
424 }
+
425 nodes.at(0) = base_position;
+
426 color.at(0) = parameters.WoodColor;
+
427
+
428 SphericalCoord parent_rotation = cart2sphere(parent_normal);
+
429
+
430 float phi = getVariation(2.f*M_PI);
+
431 float phi_child = getVariation(2.f*M_PI);
+
432
+
433 // Loop over branch segments 1-0CurveRes
+
434 for( uint i=seg_start+1; i<parameters.nCurveRes.at(n)+1; i++ ){
+
435
+
436 //---- radius ----//
+
437
+
438 float unit_taper;
+
439 if( parameters.nTaper.at(n)<1 ){
+
440 unit_taper = parameters.nTaper.at(n);
+
441 }else if( parameters.nTaper.at(n)<2 ){
+
442 unit_taper = 2.f-parameters.nTaper.at(n);
+
443 }else{
+
444 unit_taper = 0;
+
445 }
+
446
+
447 float Z = float(i)/float(parameters.nCurveRes.at(n));
+
448
+
449 //NOTE: STill not sure here if radius calculation is coming right when we have splits
+
450 radius.at(i-seg_start) = radius.at(i-seg_start-1)*(1-parameters.nTaper.at(n)*Z);
+
451
+
452 //---- nodes ----//
+
453
+
454 vec3 child_normal = sphere2cart(make_SphericalCoord(parent_rotation.elevation-child_rotation.elevation,parent_rotation.azimuth));
+
455 child_normal.normalize();
456
-
457 child_rotation = make_SphericalCoord(child_rotation.radius, child_rotation.elevation + (parameters.nCurve.at(n)+getVariation(parameters.nCurveV.at(n)))/float(parameters.nCurveRes.at(n))/float(stems_per_segment)*M_PI/180.f, child_rotation.azimuth);
-
458
-
459 float theta_child = child_rotation.elevation;
-
460
-
461 float f;
-
462 if( stems_per_segment==1 ){
-
463 f = 1;
-
464 }else{
-
465 f= float(s+1)/float(stems_per_segment);
-
466 }
-
467
-
468 vec3 base_position = nodes.at(i-seg_start-1) + (nodes.at(i-seg_start)-nodes.at(i-seg_start-1))*f;
-
469
-
470 if( parameters.BaseSplits > 0 && n==0 && base_position.z<parameters.BaseSize*length_parent ){
-
471 continue;
-
472 }
-
473
-
474 vec3 normal = nodes.at(i-seg_start)-nodes.at(i-seg_start-1);
-
475 normal.normalize();
-
476
-
477 float radius_p = radius.at(i-seg_start-1);
-
478
-
479 float offset_child = dlength_child*(i-seg_start-1)+dlength_child*float(s)/float(stems_per_segment);
-
480
-
481 float downangle = (parameters.nDownAngle.at(n+1)+getVariation(parameters.nDownAngleV.at(n+1)))*M_PI/180.f;
-
482 SphericalCoord rotation = make_SphericalCoord(downangle,phi_child);
-
483
-
484 recursiveBranch( parameters, n+1, 0, base_position, normal, rotation, length_child, radius_p, offset_child, origin, scale, leaf_template );
-
485
-
486 if( n == parameters.Levels-1 ){//leaves
-
487 phi_child += (parameters.nRotate.at(n+1)+getVariation(parameters.nRotateV.at(n+1)))*M_PI/180.f;
-
488 }else{//branches
-
489 phi_child += (parameters.nRotate.at(n+1)+getVariation(parameters.nRotateV.at(n+1)))*M_PI/180.f;
-
490 }
-
491
-
492 }
-
493
-
494 // if nSegSplits>0, split into children and terminate current branch
-
495 if( parameters.nSegSplits.at(n)>0 && i<parameters.nCurveRes.at(n) ){
-
496
-
497 float angle_split = (parameters.nSplitAngle.at(n+1)-getVariation(parameters.nSplitAngleV.at(n+1)))*M_PI/180.f;
-
498
-
499 vec3 base_position = nodes.back();
-
500
-
501 float phi_split = 2.f*M_PI*getVariation(1);
-
502
-
503 float radius_p = radius.at(i-seg_start);
-
504
-
505 for( uint j=0; j<parameters.nSegSplits.at(n)+1; j++ ){ //looping over clones (splits)
-
506
-
507 vec3 normal = nodes.at(i-seg_start)-nodes.at(i-seg_start-1);
-
508 normal.normalize();
-
509
-
510 helios::SphericalCoord rotation = make_SphericalCoord(angle_split,phi_split);
-
511
-
512 recursiveBranch( parameters, n, i, base_position, normal, rotation, length_parent, radius_p, offset_child, origin, scale, leaf_template );
-
513
-
514 phi_split += 2.f*M_PI/float(parameters.nSegSplits.at(n)+1);
-
515
-
516 }
-
517
-
518 break;
-
519 }
-
520
-
521 }
-
522
-
523 if( n<=branchLevels ){
-
524 //shift to origin
-
525 for( uint i=0; i<nodes.size(); i++ ){
-
526 nodes.at(i) = nodes.at(i) + origin;
-
527 }
-
528
-
529 //add to context
-
530 std::vector<uint> branches;
-
531 if( strcmp(parameters.WoodFile.c_str(),"none")==0 ){
-
532 branches = context->addTube(branch_segs,nodes,radius,color);
-
533 }else{
-
534 branches = context->addTube(branch_segs,nodes,radius,parameters.WoodFile.c_str());
-
535 }
-
536 UUID_branch.back().insert(UUID_branch.back().end(),branches.begin(),branches.end());
-
537 }
-
538
-
539 }else{ //leaves
+
457 child_normal = rotatePointAboutLine( child_normal, make_vec3(0,0,0), parent_normal, child_rotation.azimuth );
+
458
+
459 nodes.at(i-seg_start) = nodes.at(i-seg_start-1) + child_normal*dlength_child;
+
460
+
461 //---- color -----//
+
462
+
463 color.at(i-seg_start) = parameters.WoodColor;
+
464
+
465 // ---Branch recursion ---- //
+
466
+
467 for( uint s=0; s<stems_per_segment; s++ ){
+
468
+
469 child_rotation = make_SphericalCoord(child_rotation.radius, child_rotation.elevation + (parameters.nCurve.at(n)+getVariation(parameters.nCurveV.at(n)))/float(parameters.nCurveRes.at(n))/float(stems_per_segment)*M_PI/180.f, child_rotation.azimuth);
+
470
+
471 float theta_child = child_rotation.elevation;
+
472
+
473 float f;
+
474 if( stems_per_segment==1 ){
+
475 f = 1;
+
476 }else{
+
477 f= float(s+1)/float(stems_per_segment);
+
478 }
+
479
+
480 vec3 base_position = nodes.at(i-seg_start-1) + (nodes.at(i-seg_start)-nodes.at(i-seg_start-1))*f;
+
481
+
482 if( base_splits > 0 && n==0 && base_position.z<base_size*length_parent ){
+
483 continue;
+
484 }
+
485
+
486 vec3 normal = nodes.at(i-seg_start)-nodes.at(i-seg_start-1);
+
487 normal.normalize();
+
488
+
489 float radius_p = radius.at(i-seg_start-1);
+
490
+
491 float offset_child = dlength_child*(i-seg_start-1)+dlength_child*float(s)/float(stems_per_segment);
+
492
+
493 float downangle = (parameters.nDownAngle.at(n+1)+getVariation(parameters.nDownAngleV.at(n+1)))*M_PI/180.f;
+
494 SphericalCoord rotation = make_SphericalCoord(downangle,phi_child);
+
495
+
496 recursiveBranch( parameters, n+1, 0, base_position, normal, rotation, length_child, radius_p, offset_child, origin, scale, leaf_template, base_size, base_splits );
+
497
+
498 if( n == parameters.Levels-1 ){//leaves
+
499 phi_child += (parameters.nRotate.at(n+1)+getVariation(parameters.nRotateV.at(n+1)))*M_PI/180.f;
+
500 }else{//branches
+
501 phi_child += (parameters.nRotate.at(n+1)+getVariation(parameters.nRotateV.at(n+1)))*M_PI/180.f;
+
502 }
+
503
+
504 }
+
505
+
506 // if nSegSplits>0, split into children and terminate current branch
+
507 if( parameters.nSegSplits.at(n)>0 && i<parameters.nCurveRes.at(n) ){
+
508
+
509 float angle_split = (parameters.nSplitAngle.at(n+1)-getVariation(parameters.nSplitAngleV.at(n+1)))*M_PI/180.f;
+
510
+
511 vec3 base_position = nodes.back();
+
512
+
513 float phi_split = 2.f*M_PI*getVariation(1);
+
514
+
515 float radius_p = radius.at(i-seg_start);
+
516
+
517 for( uint j=0; j<parameters.nSegSplits.at(n)+1; j++ ){ //looping over clones (splits)
+
518
+
519 vec3 normal = nodes.at(i-seg_start)-nodes.at(i-seg_start-1);
+
520 normal.normalize();
+
521
+
522 helios::SphericalCoord rotation = make_SphericalCoord(angle_split,phi_split);
+
523
+
524 recursiveBranch( parameters, n, i, base_position, normal, rotation, length_parent, radius_p, offset_child, origin, scale, leaf_template, base_size, base_splits );
+
525
+
526 phi_split += 2.f*M_PI/float(parameters.nSegSplits.at(n)+1);
+
527
+
528 }
+
529
+
530 break;
+
531 }
+
532
+
533 }
+
534
+
535 if( n<=branchLevels ){
+
536 //shift to origin
+
537 for( uint i=0; i<nodes.size(); i++ ){
+
538 nodes.at(i) = nodes.at(i) + origin;
+
539 }
540
-
541 float phi = child_rotation.azimuth;
-
542
-
543 vec3 position = base_position;
-
544
-
545 SphericalCoord rotation = cart2sphere(parent_normal);
-
546
-
547 //shift to origin
-
548 position = position + origin;
-
549
-
550 float downangle = (parameters.nDownAngle.at(n)+getVariation(parameters.nDownAngleV.at(n)))*M_PI/180.f;
-
551
-
552 //calculate leaf angle from distibution
-
553 if( parameters.leafAngleCDF.size()>0 ){
-
554 float rt = context->randu();
-
555 float dTheta = M_PI/float(parameters.leafAngleCDF.size());
-
556 for( int i=0; i<parameters.leafAngleCDF.size(); i++ ){
-
557 if( rt<parameters.leafAngleCDF.at(i) ){
-
558 float theta = (i+context->randu())*dTheta;
-
559 rotation = make_SphericalCoord(theta,context->randu()*2.f*M_PI);
-
560 break;
-
561 }
-
562 }
-
563 }
-
564
-
565 //add to Context
-
566 uint ID = context->copyObject( leaf_template );
-
567 std::vector<uint> UUIDs = context->getObjectPointer(ID)->getPrimitiveUUIDs();
-
568 UUID_leaf.back().insert( UUID_leaf.back().end(), UUIDs.begin(), UUIDs.end() );
-
569
-
570 //perform transformations
-
571 if( parameters.leafAngleCDF.size()>0 ){
-
572 context->getObjectPointer(ID)->rotate( rotation.elevation, "y" );
-
573 context->getObjectPointer(ID)->rotate( rotation.azimuth, "z" );
-
574 context->getObjectPointer(ID)->translate(position);
-
575 }else{
+
541 //add to context
+
542 std::vector<uint> branches;
+
543 if( strcmp(parameters.WoodFile.c_str(),"none")==0 ){
+
544 branches = context->addTube(branch_segs,nodes,radius,color);
+
545 }else{
+
546 branches = context->addTube(branch_segs,nodes,radius,parameters.WoodFile.c_str());
+
547 }
+
548 UUID_branch.back().insert(UUID_branch.back().end(),branches.begin(),branches.end());
+
549 }
+
550
+
551 }else{ //leaves
+
552
+
553 float phi = child_rotation.azimuth;
+
554
+
555 vec3 position = base_position;
+
556
+
557 SphericalCoord rotation = cart2sphere(parent_normal);
+
558
+
559 //shift to origin
+
560 position = position + origin;
+
561
+
562 float downangle = (parameters.nDownAngle.at(n)+getVariation(parameters.nDownAngleV.at(n)))*M_PI/180.f;
+
563
+
564 //calculate leaf angle from distibution
+
565 if( parameters.leafAngleCDF.size()>0 ){
+
566 float rt = context->randu();
+
567 float dTheta = M_PI/float(parameters.leafAngleCDF.size());
+
568 for( int i=0; i<parameters.leafAngleCDF.size(); i++ ){
+
569 if( rt<parameters.leafAngleCDF.at(i) ){
+
570 float theta = (i+context->randu())*dTheta;
+
571 rotation = make_SphericalCoord(theta,context->randu()*2.f*M_PI);
+
572 break;
+
573 }
+
574 }
+
575 }
576
-
577 context->getObjectPointer(ID)->rotate( M_PI, "x" ); //flip leaf (this is so lighting looks right based on leaf normal)
-
578
-
579 //rotate leaf so the tip is pointing in the same direction as the branch
-
580 context->getObjectPointer(ID)->rotate( 0.5*M_PI - rotation.zenith, "y" );
-
581 context->getObjectPointer(ID)->rotate( -0.5*M_PI - rotation.azimuth, "z" );
-
582
-
583 vec3 lnorm = context->getTileObjectPointer(ID)->getNormal(); // current leaf normal vector
-
584 vec3 pvec = cross( parent_normal, lnorm );
-
585
-
586 //rotate leaf based on downangle
-
587 if( downangle<0.f ){
-
588 downangle = M_PI+downangle;
-
589 }
-
590 context->getObjectPointer(ID)->rotate( -downangle, pvec );
-
591
-
592 //shift leaf perpendicular to the direction of the branch
-
593 vec3 offset = -0.6*parameters.LeafScale*scale*fabs(sinf(downangle))*lnorm;
-
594
-
595 context->getObjectPointer(ID)->translate( offset );
-
596
-
597 //random azimuthal rotation about the branch
-
598 context->getObjectPointer(ID)->rotate( phi, parent_normal );
-
599
-
600 //translate to the position of the branch
-
601 context->getObjectPointer(ID)->translate(position);
-
602
-
603 }
-
604
-
605 }
-
606
-
607}
+
577 //add to Context
+
578 uint ID = context->copyObject( leaf_template );
+
579 std::vector<uint> UUIDs = context->getObjectPointer(ID)->getPrimitiveUUIDs();
+
580 UUID_leaf.back().insert( UUID_leaf.back().end(), UUIDs.begin(), UUIDs.end() );
+
581
+
582 //perform transformations
+
583 if( parameters.leafAngleCDF.size()>0 ){
+
584 context->getObjectPointer(ID)->rotate( rotation.elevation, "y" );
+
585 context->getObjectPointer(ID)->rotate( rotation.azimuth, "z" );
+
586 context->getObjectPointer(ID)->translate(position);
+
587 }else{
+
588
+
589 context->getObjectPointer(ID)->rotate( M_PI, "x" ); //flip leaf (this is so lighting looks right based on leaf normal)
+
590
+
591 //rotate leaf so the tip is pointing in the same direction as the branch
+
592 context->getObjectPointer(ID)->rotate( 0.5*M_PI - rotation.zenith, "y" );
+
593 context->getObjectPointer(ID)->rotate( -0.5*M_PI - rotation.azimuth, "z" );
+
594
+
595 vec3 lnorm = context->getTileObjectPointer(ID)->getNormal(); // current leaf normal vector
+
596 vec3 pvec = cross( parent_normal, lnorm );
+
597
+
598 //rotate leaf based on downangle
+
599 if( downangle<0.f ){
+
600 downangle = M_PI+downangle;
+
601 }
+
602 context->getObjectPointer(ID)->rotate( -downangle, pvec );
+
603
+
604 //shift leaf perpendicular to the direction of the branch
+
605 vec3 offset = -0.6*parameters.LeafScale*scale*fabs(sinf(downangle))*lnorm;
+
606
+
607 context->getObjectPointer(ID)->translate( offset );
608
-
609float WeberPennTree::ShapeRatio( uint shape, float ratio ){
-
610
-
611 if( shape==0 ){ //conical
-
612 return 0.2+0.8*ratio;
-
613 }else if( shape==1 ){ //spherical
-
614 return 0.2+0.8*sin(M_PI*ratio);
-
615 }else if( shape==2 ){ //hemispherical
-
616 return 0.2+0.8*sin(0.5*M_PI*ratio);
-
617 }else if( shape==3 ){ //cylindrical
-
618 return 1.f;
-
619 }else if( shape==4 ){ //tapered cylinder
-
620 return 0.5+0.5*ratio;
-
621 }else if( shape==5 ){ //flame
-
622 if( ratio<=0.7 ){
-
623 return ratio/0.7f;
-
624 }else{
-
625 return (1.f-ratio)/0.3f;
-
626 }
-
627 }else if( shape==6 ){ //inverse conical
-
628 return 1-0.8*ratio;
-
629 }else if( shape==7 ){ //tend flame
-
630 if( ratio<=0.7 ){
-
631 return 0.5+0.5*ratio/0.7f;
-
632 }else{
-
633 return 0.5+0.5*(1-ratio)/0.3f;
-
634 }
-
635 }else if( shape==8 ){ //envelope
-
636 return 0;
-
637 }
-
638
-
639 return 0;
-
640
-
641}
-
642
-
643float WeberPennTree::getVariation( float V ){
-
644
-
645 std::uniform_real_distribution<float> unif_distribution;
-
646
-
647 return -V + 2.f*unif_distribution(generator)*V;
-
648
-
649}
+
609 //random azimuthal rotation about the branch
+
610 context->getObjectPointer(ID)->rotate( phi, parent_normal );
+
611
+
612 //translate to the position of the branch
+
613 context->getObjectPointer(ID)->translate(position);
+
614
+
615 }
+
616
+
617 }
+
618
+
619}
+
620
+
621float WeberPennTree::ShapeRatio( uint shape, float ratio ){
+
622
+
623 if( shape==0 ){ //conical
+
624 return 0.2+0.8*ratio;
+
625 }else if( shape==1 ){ //spherical
+
626 return 0.2+0.8*sin(M_PI*ratio);
+
627 }else if( shape==2 ){ //hemispherical
+
628 return 0.2+0.8*sin(0.5*M_PI*ratio);
+
629 }else if( shape==3 ){ //cylindrical
+
630 return 1.f;
+
631 }else if( shape==4 ){ //tapered cylinder
+
632 return 0.5+0.5*ratio;
+
633 }else if( shape==5 ){ //flame
+
634 if( ratio<=0.7 ){
+
635 return ratio/0.7f;
+
636 }else{
+
637 return (1.f-ratio)/0.3f;
+
638 }
+
639 }else if( shape==6 ){ //inverse conical
+
640 return 1-0.8*ratio;
+
641 }else if( shape==7 ){ //tend flame
+
642 if( ratio<=0.7 ){
+
643 return 0.5+0.5*ratio/0.7f;
+
644 }else{
+
645 return 0.5+0.5*(1-ratio)/0.3f;
+
646 }
+
647 }else if( shape==8 ){ //envelope
+
648 return 0;
+
649 }
650
-
-
651std::vector<uint> WeberPennTree::getTrunkUUIDs( const uint TreeID ){
-
652
-
653 if( TreeID >= UUID_trunk.size() ){
-
654 std::cerr << "ERROR (WeberPennTree::getTrunkUUIDs): Tree ID " << TreeID << " does not exist." << std::endl;
-
655 throw(1);
-
656 }
-
657
-
658 return UUID_trunk.at(TreeID);
-
659}
-
-
660
-
-
661std::vector<uint> WeberPennTree::getBranchUUIDs( const uint TreeID ){
+
651 return 0;
+
652
+
653}
+
654
+
655float WeberPennTree::getVariation( float V ){
+
656
+
657 std::uniform_real_distribution<float> unif_distribution;
+
658
+
659 return -V + 2.f*unif_distribution(generator)*V;
+
660
+
661}
662
-
663 if( TreeID >= UUID_branch.size() ){
-
664 std::cerr << "ERROR (WeberPennTree::getBranchUUIDs): Tree ID " << TreeID << " does not exist." << std::endl;
-
665 throw(1);
-
666 }
-
667
-
668 return UUID_branch.at(TreeID);
-
669}
+
+
663std::vector<uint> WeberPennTree::getTrunkUUIDs( const uint TreeID ){
+
664
+
665 if( TreeID >= UUID_trunk.size() ){
+
666 std::cerr << "ERROR (WeberPennTree::getTrunkUUIDs): Tree ID " << TreeID << " does not exist." << std::endl;
+
667 throw(1);
+
668 }
+
669
+
670 return UUID_trunk.at(TreeID);
+
671}
-
670
-
-
671std::vector<uint> WeberPennTree::getLeafUUIDs( const uint TreeID ){
672
-
673 if( TreeID >= UUID_leaf.size() ){
-
674 std::cerr << "ERROR (WeberPennTree::getLeafUUIDs): Tree ID " << TreeID << " does not exist." << std::endl;
-
675 throw(1);
-
676 }
-
677
-
678 return UUID_leaf.at(TreeID);
-
679}
+
+
673std::vector<uint> WeberPennTree::getBranchUUIDs( const uint TreeID ){
+
674
+
675 if( TreeID >= UUID_branch.size() ){
+
676 std::cerr << "ERROR (WeberPennTree::getBranchUUIDs): Tree ID " << TreeID << " does not exist." << std::endl;
+
677 throw(1);
+
678 }
+
679
+
680 return UUID_branch.at(TreeID);
+
681}
-
680
-
-
681std::vector<uint> WeberPennTree::getAllUUIDs( const uint TreeID ){
682
-
683 if( TreeID >= UUID_leaf.size() ){
-
684 std::cerr << "ERROR (WeberPennTree::getAllUUIDs): Tree ID " << TreeID << " does not exist." << std::endl;
-
685 throw(1);
-
686 }
-
687
-
688 std::vector<uint> UUIDs;
-
689 UUIDs.insert(UUIDs.end(),UUID_trunk.at(TreeID).begin(),UUID_trunk.at(TreeID).end());
-
690 UUIDs.insert(UUIDs.end(),UUID_branch.at(TreeID).begin(),UUID_branch.at(TreeID).end());
-
691 UUIDs.insert(UUIDs.end(),UUID_leaf.at(TreeID).begin(),UUID_leaf.at(TreeID).end());
-
692 return UUIDs;
-
693}
+
+
683std::vector<uint> WeberPennTree::getLeafUUIDs( const uint TreeID ){
+
684
+
685 if( TreeID >= UUID_leaf.size() ){
+
686 std::cerr << "ERROR (WeberPennTree::getLeafUUIDs): Tree ID " << TreeID << " does not exist." << std::endl;
+
687 throw(1);
+
688 }
+
689
+
690 return UUID_leaf.at(TreeID);
+
691}
+
692
+
+
693std::vector<uint> WeberPennTree::getAllUUIDs( const uint TreeID ){
694
-
-
695void WeberPennTree::setBranchRecursionLevel( const uint level ){
-
696 branchLevels = level;
-
697}
-
-
698
-
-
699void WeberPennTree::setTrunkSegmentResolution( const uint segs ){
-
700 if( segs<3 ){
-
701 std::cout << "WARNING (WeberPennTree::setTrunkSegmentResolution): cannot set trunk segment resolution less than 3. Ignoring this command." << std::endl;
-
702 }else{
-
703 trunk_segs=segs;
-
704 }
+
695 if( TreeID >= UUID_leaf.size() ){
+
696 std::cerr << "ERROR (WeberPennTree::getAllUUIDs): Tree ID " << TreeID << " does not exist." << std::endl;
+
697 throw(1);
+
698 }
+
699
+
700 std::vector<uint> UUIDs;
+
701 UUIDs.insert(UUIDs.end(),UUID_trunk.at(TreeID).begin(),UUID_trunk.at(TreeID).end());
+
702 UUIDs.insert(UUIDs.end(),UUID_branch.at(TreeID).begin(),UUID_branch.at(TreeID).end());
+
703 UUIDs.insert(UUIDs.end(),UUID_leaf.at(TreeID).begin(),UUID_leaf.at(TreeID).end());
+
704 return UUIDs;
705}
706
-
707void WeberPennTree::setBranchSegmentResolution( const uint segs ){
-
708 if( segs<3 ){
-
709 std::cout << "WARNING (WeberPennTree::setBranchSegmentResolution): cannot set branch segment resolution less than 3. Ignoring this command." << std::endl;
-
710 }else{
-
711 branch_segs=segs;
-
712 }
-
713}
+
707void WeberPennTree::setBranchRecursionLevel( const uint level ){
+
708 branchLevels = level;
+
709}
-
714
-
-
715void WeberPennTree::setLeafSubdivisions( const helios::int2 segs ){
-
716 if( segs.x<1 || segs.y<1 ){
-
717 std::cout << "WARNING (WeberPennTree::setLeafSubdivisions): cannot set number of leaf subdivisions to less than 1. Ignoring this command." << std::endl;
-
718 }else{
-
719 leaf_segs=segs;
-
720 }
-
721}
+
710
+
+
711void WeberPennTree::setTrunkSegmentResolution( const uint segs ){
+
712 if( segs<3 ){
+
713 std::cout << "WARNING (WeberPennTree::setTrunkSegmentResolution): cannot set trunk segment resolution less than 3. Ignoring this command." << std::endl;
+
714 }else{
+
715 trunk_segs=segs;
+
716 }
+
717}
-
722
-
-
723WeberPennTreeParameters WeberPennTree::getTreeParameters( const char* treename ){
-
724
-
725 if( trees_library.find(treename)==trees_library.end() ){
-
726 std::cerr << "ERROR (WeberPennTree::getTreeParameters): Tree " << treename << " does not exist in the tree library." << std::endl;
-
727 exit(EXIT_FAILURE);
-
728 }
-
729
-
730 return trees_library.at(treename);
-
731
-
732}
+
718
+
+
719void WeberPennTree::setBranchSegmentResolution( const uint segs ){
+
720 if( segs<3 ){
+
721 std::cout << "WARNING (WeberPennTree::setBranchSegmentResolution): cannot set branch segment resolution less than 3. Ignoring this command." << std::endl;
+
722 }else{
+
723 branch_segs=segs;
+
724 }
+
725}
-
733
-
-
734void WeberPennTree::setTreeParameters( const char* treename, const WeberPennTreeParameters parameters ){
-
735
-
736 if( trees_library.find(treename)==trees_library.end() ){
-
737 std::cerr << "ERROR (WeberPennTree::setTreeParameters): Tree " << treename << " does not exist in the tree library." << std::endl;
-
738 exit(EXIT_FAILURE);
-
739 }
-
740
-
741 trees_library.at(treename) = parameters;
-
742
-
743}
+
726
+
+
727void WeberPennTree::setLeafSubdivisions( const helios::int2 segs ){
+
728 if( segs.x<1 || segs.y<1 ){
+
729 std::cout << "WARNING (WeberPennTree::setLeafSubdivisions): cannot set number of leaf subdivisions to less than 1. Ignoring this command." << std::endl;
+
730 }else{
+
731 leaf_segs=segs;
+
732 }
+
733}
-
744
-
-
745void WeberPennTree::seedRandomGenerator( const uint seed ){
-
746 generator.seed(seed);
-
747}
+
734
+
+
735WeberPennTreeParameters WeberPennTree::getTreeParameters( const char* treename ){
+
736
+
737 if( trees_library.find(treename)==trees_library.end() ){
+
738 std::cerr << "ERROR (WeberPennTree::getTreeParameters): Tree " << treename << " does not exist in the tree library." << std::endl;
+
739 exit(EXIT_FAILURE);
+
740 }
+
741
+
742 return trees_library.at(treename);
+
743
+
744}
-
748
-
-
749void WeberPennTree::loadXML( const char* filename ){
-
750
-
751 std::cout << "Loading Weber Penn Tree library from XML file: " << filename << "..." << std::flush;
+
745
+
+
746void WeberPennTree::setTreeParameters( const char* treename, const WeberPennTreeParameters parameters ){
+
747
+
748 if( trees_library.find(treename)==trees_library.end() ){
+
749 std::cerr << "ERROR (WeberPennTree::setTreeParameters): Tree " << treename << " does not exist in the tree library." << std::endl;
+
750 exit(EXIT_FAILURE);
+
751 }
752
-
753 // Using "pugixml" parser. See pugixml.org
-
754 pugi::xml_document xmldoc;
-
755
-
756 //load file
-
757 pugi::xml_parse_result result = xmldoc.load_file(filename);
-
758
-
759 //error checking
-
760 if (!result){
-
761 std::cout << "failed." << std::endl;
-
762 std::cerr << "XML [" << filename << "] parsed with errors, attr value: [" << xmldoc.child("node").attribute("attr").value() << "]\n";
-
763 std::cerr << "Error description: " << result.description() << "\n";
-
764 std::cerr << "Error offset: " << result.offset << " (error at [..." << (filename + result.offset) << "]\n\n";
-
765 exit(EXIT_FAILURE);
-
766 }
+
753 trees_library.at(treename) = parameters;
+
754
+
755}
+
+
756
+
+
757void WeberPennTree::seedRandomGenerator( const uint seed ){
+
758 generator.seed(seed);
+
759}
+
+
760
+
+
761void WeberPennTree::loadXML( const char* filename ){
+
762
+
763 std::cout << "Loading Weber Penn Tree library from XML file: " << filename << "..." << std::flush;
+
764
+
765 // Using "pugixml" parser. See pugixml.org
+
766 pugi::xml_document xmldoc;
767
-
768 pugi::xml_node helios = xmldoc.child("helios");
-
769
-
770 if( helios.empty() ){
-
771 std::cout << "failed." << std::endl;
-
772 std::cerr << "ERROR (loadXML): XML file must have tag '<helios> ... </helios>' bounding all other tags." << std::endl;
-
773 exit(EXIT_FAILURE);
-
774 }
-
775
-
776 int tree_count = 0;
-
777 for (pugi::xml_node p = helios.child("WeberPennTree"); p; p = p.next_sibling("WeberPennTree")){
-
778
-
779 tree_count ++;
-
780
-
781 WeberPennTreeParameters params;
-
782
-
783 const char* label = p.attribute("label").value();
-
784 params.label = label;
-
785
-
786 // * Shape ID * //
-
787 pugi::xml_node shape_node = p.child("Shape");
-
788
-
789 //note: pugi loads xml data as a character. need to separate it into 3 floats
-
790 const char* shape_str = shape_node.child_value();
-
791 if( strlen(shape_str)==0 ){
-
792 std::cout << "failed." << std::endl;
-
793 std::cerr << "ERROR (WeberPennTree::loadXML): Shape was not given for tree " << label << "." << std::endl;
-
794 exit(EXIT_FAILURE);
-
795 }else{
-
796 params.Shape = atoi(shape_str);
-
797 }
-
798
-
799 // * Base Size * //
-
800 pugi::xml_node basesize_node = p.child("BaseSize");
-
801
-
802 const char* basesize_str = basesize_node.child_value();
-
803 if( strlen(basesize_str)==0 ){
+
768 //load file
+
769 pugi::xml_parse_result result = xmldoc.load_file(filename);
+
770
+
771 //error checking
+
772 if (!result){
+
773 std::cout << "failed." << std::endl;
+
774 std::cerr << "XML [" << filename << "] parsed with errors, attr value: [" << xmldoc.child("node").attribute("attr").value() << "]\n";
+
775 std::cerr << "Error description: " << result.description() << "\n";
+
776 std::cerr << "Error offset: " << result.offset << " (error at [..." << (filename + result.offset) << "]\n\n";
+
777 exit(EXIT_FAILURE);
+
778 }
+
779
+
780 pugi::xml_node helios = xmldoc.child("helios");
+
781
+
782 if( helios.empty() ){
+
783 std::cout << "failed." << std::endl;
+
784 std::cerr << "ERROR (loadXML): XML file must have tag '<helios> ... </helios>' bounding all other tags." << std::endl;
+
785 exit(EXIT_FAILURE);
+
786 }
+
787
+
788 int tree_count = 0;
+
789 for (pugi::xml_node p = helios.child("WeberPennTree"); p; p = p.next_sibling("WeberPennTree")){
+
790
+
791 tree_count ++;
+
792
+
793 WeberPennTreeParameters params;
+
794
+
795 const char* label = p.attribute("label").value();
+
796 params.label = label;
+
797
+
798 // * Shape ID * //
+
799 pugi::xml_node shape_node = p.child("Shape");
+
800
+
801 //note: pugi loads xml data as a character. need to separate it into 3 floats
+
802 const char* shape_str = shape_node.child_value();
+
803 if( strlen(shape_str)==0 ){
804 std::cout << "failed." << std::endl;
-
805 std::cerr << "ERROR (WeberPennTree::loadXML): BaseSize was not given for tree " << label << "." << std::endl;
+
805 std::cerr << "ERROR (WeberPennTree::loadXML): Shape was not given for tree " << label << "." << std::endl;
806 exit(EXIT_FAILURE);
807 }else{
-
808 params.BaseSize = atof(basesize_str);
+
808 params.Shape = atoi(shape_str);
809 }
810
-
811 // * Base Splits * //
-
812 pugi::xml_node basesplits_node = p.child("BaseSplits");
+
811 // * Base Size * //
+
812 pugi::xml_node basesize_node = p.child("BaseSize");
813
-
814 const char* basesplits_str = basesplits_node.child_value();
-
815 if( strlen(basesplits_str)==0 ){
+
814 const char* basesize_str = basesize_node.child_value();
+
815 if( strlen(basesize_str)==0 ){
816 std::cout << "failed." << std::endl;
-
817 std::cerr << "ERROR (WeberPennTree::loadXML): BaseSplits was not given for tree " << label << "." << std::endl;
+
817 std::cerr << "ERROR (WeberPennTree::loadXML): BaseSize was not given for tree " << label << "." << std::endl;
818 exit(EXIT_FAILURE);
819 }else{
-
820 params.BaseSplits = atoi(basesplits_str);
+
820 params.BaseSize = atof(basesize_str);
821 }
822
-
823 // * Base Split Size * //
-
824 pugi::xml_node basesplitsize_node = p.child("BaseSplitSize");
-
825
-
826 const char* basesplitsize_str = basesplitsize_node.child_value();
-
827 if( strlen(basesplitsize_str)==0 ){
-
828 std::cout << "failed." << std::endl;
-
829 std::cerr << "ERROR (WeberPennTree::loadXML): BaseSplitSize was not given for tree " << label << "." << std::endl;
-
830 exit(EXIT_FAILURE);
-
831 }else{
-
832 params.BaseSplitSize = atof(basesplitsize_str);
-
833 }
-
834
-
835 // * Scale * //
-
836 pugi::xml_node scale_node = p.child("Scale");
-
837
-
838 const char* scale_str = scale_node.child_value();
-
839 if( strlen(scale_str)==0 ){
-
840 std::cout << "failed." << std::endl;
-
841 std::cerr << "ERROR (WeberPennTree::loadXML): Scale was not given for tree " << label << "." << std::endl;
-
842 exit(EXIT_FAILURE);
-
843 }else{
-
844 params.Scale= atof(scale_str);
-
845 }
-
846
-
847 // * ScaleV * //
-
848 pugi::xml_node scalev_node = p.child("ScaleV");
-
849
-
850 const char* scalev_str = scalev_node.child_value();
-
851 if( strlen(scalev_str)==0 ){
-
852 std::cout << "failed." << std::endl;
-
853 std::cerr << "ERROR (WeberPennTree::loadXML): ScaleV was not given for tree " << label << "." << std::endl;
-
854 exit(EXIT_FAILURE);
-
855 }else{
-
856 params.ScaleV= atof(scalev_str);
-
857 }
-
858
-
859 // * ZScale * //
-
860 pugi::xml_node zscale_node = p.child("ZScale");
-
861
-
862 const char* zscale_str = zscale_node.child_value();
-
863 if( strlen(zscale_str)==0 ){
-
864 std::cout << "failed." << std::endl;
-
865 std::cerr << "ERROR (WeberPennTree::loadXML): ZScale was not given for tree " << label << "." << std::endl;
-
866 exit(EXIT_FAILURE);
-
867 }else{
-
868 params.ZScale= atof(zscale_str);
-
869 }
-
870
-
871 // * ZScaleV * //
-
872 pugi::xml_node zscalev_node = p.child("ZScaleV");
-
873
-
874 const char* zscalev_str = zscalev_node.child_value();
-
875 if( strlen(zscalev_str)==0 ){
-
876 std::cout << "failed." << std::endl;
-
877 std::cerr << "ERROR (WeberPennTree::loadXML): ZScaleV was not given for tree " << label << "." << std::endl;
-
878 exit(EXIT_FAILURE);
-
879 }else{
-
880 params.ZScaleV= atof(zscalev_str);
-
881 }
-
882
-
883 // * Ratio * //
-
884 pugi::xml_node ratio_node = p.child("Ratio");
-
885
-
886 const char* ratio_str = ratio_node.child_value();
-
887 if( strlen(ratio_str)==0 ){
-
888 std::cout << "failed." << std::endl;
-
889 std::cerr << "ERROR (WeberPennTree::loadXML): Ratio was not given for tree " << label << "." << std::endl;
-
890 exit(EXIT_FAILURE);
-
891 }else{
-
892 params.Ratio = atof(ratio_str);
+
823 // * Base Size V * //
+
824 pugi::xml_node basesizev_node = p.child("BaseSizeV");
+
825
+
826 const char* basesizev_str = basesizev_node.child_value();
+
827 if( strlen(basesizev_str)==0 ){
+
828 params.BaseSizeV = 0;
+
829 }else{
+
830 float bsv = atof(basesizev_str);
+
831 if ( params.BaseSize - bsv < 0 ){
+
832 std::cout << "failed." << std::endl;
+
833 std::cerr << "ERROR (WeberPennTree::loadXML): Given BaseSizeV (" << bsv << ") is too big for tree " << label << ". BaseSize - BaseSizeV should be positive." << std::endl;
+
834 exit(EXIT_FAILURE);
+
835 }
+
836 params.BaseSizeV = bsv;
+
837 }
+
838
+
839 // * Base Splits * //
+
840 pugi::xml_node basesplits_node = p.child("BaseSplits");
+
841
+
842 const char* basesplits_str = basesplits_node.child_value();
+
843 if( strlen(basesplits_str)==0 ){
+
844 std::cout << "failed." << std::endl;
+
845 std::cerr << "ERROR (WeberPennTree::loadXML): BaseSplits was not given for tree " << label << "." << std::endl;
+
846 exit(EXIT_FAILURE);
+
847 }else{
+
848 params.BaseSplits = atoi(basesplits_str);
+
849 }
+
850
+
851 // * Base Splits V * //
+
852 pugi::xml_node basesplitsv_node = p.child("BaseSplitsV");
+
853
+
854 const char* basesplitsv_str = basesplitsv_node.child_value();
+
855 if( strlen(basesplitsv_str)==0 ){
+
856 params.BaseSplitsV = 0;
+
857 }else{
+
858 uint bsv = atoi(basesplitsv_str);
+
859 if ( params.BaseSplits - bsv < 0 ){
+
860 std::cout << "failed." << std::endl;
+
861 std::cerr << "ERROR (WeberPennTree::loadXML): Given BaseSplitsV (" << bsv << ") is too big for tree " << label << ". BaseSplits - BaseSplitsV should be positive." << std::endl;
+
862 exit(EXIT_FAILURE);
+
863 }
+
864 params.BaseSplitsV = bsv;
+
865 }
+
866
+
867 // * Base Split Size * //
+
868 pugi::xml_node basesplitsize_node = p.child("BaseSplitSize");
+
869
+
870 const char* basesplitsize_str = basesplitsize_node.child_value();
+
871 if( strlen(basesplitsize_str)==0 ){
+
872 std::cout << "failed." << std::endl;
+
873 std::cerr << "ERROR (WeberPennTree::loadXML): BaseSplitSize was not given for tree " << label << "." << std::endl;
+
874 exit(EXIT_FAILURE);
+
875 }else{
+
876 params.BaseSplitSize = atof(basesplitsize_str);
+
877 }
+
878
+
879 // * Base Split Size V * //
+
880 pugi::xml_node basesplitsizev_node = p.child("BaseSplitSizeV");
+
881
+
882 const char* basesplitsizev_str = basesplitsizev_node.child_value();
+
883 if( strlen(basesplitsizev_str)==0 ){
+
884 params.BaseSplitSizeV = 0;
+
885 }else{
+
886 float bssv = atof(basesplitsizev_str);
+
887 if ( params.BaseSplitSize - bssv < 0 ){
+
888 std::cout << "failed." << std::endl;
+
889 std::cerr << "ERROR (WeberPennTree::loadXML): Given BaseSplitSizeV (" << bssv << ") is too big for tree " << label << ". BaseSplitSize - BaseSplitSizeV should be positive." << std::endl;
+
890 exit(EXIT_FAILURE);
+
891 }
+
892 params.BaseSplitSizeV = bssv;
893 }
894
-
895 // * RatioPower * //
-
896 pugi::xml_node ratiopower_node = p.child("RatioPower");
+
895 // * Scale * //
+
896 pugi::xml_node scale_node = p.child("Scale");
897
-
898 const char* ratiopower_str = ratiopower_node.child_value();
-
899 if( strlen(ratiopower_str)==0 ){
+
898 const char* scale_str = scale_node.child_value();
+
899 if( strlen(scale_str)==0 ){
900 std::cout << "failed." << std::endl;
-
901 std::cerr << "ERROR (WeberPennTree::loadXML): RatioPower was not given for tree " << label << "." << std::endl;
+
901 std::cerr << "ERROR (WeberPennTree::loadXML): Scale was not given for tree " << label << "." << std::endl;
902 exit(EXIT_FAILURE);
903 }else{
-
904 params.RatioPower = atof(ratiopower_str);
+
904 params.Scale= atof(scale_str);
905 }
906
-
907 // * Lobes * //
-
908 pugi::xml_node lobes_node = p.child("Lobes");
+
907 // * ScaleV * //
+
908 pugi::xml_node scalev_node = p.child("ScaleV");
909
-
910 const char* lobes_str = lobes_node.child_value();
-
911 if( strlen(lobes_str)==0 ){
+
910 const char* scalev_str = scalev_node.child_value();
+
911 if( strlen(scalev_str)==0 ){
912 std::cout << "failed." << std::endl;
-
913 std::cerr << "ERROR (WeberPennTree::loadXML): Lobes was not given for tree " << label << "." << std::endl;
+
913 std::cerr << "ERROR (WeberPennTree::loadXML): ScaleV was not given for tree " << label << "." << std::endl;
914 exit(EXIT_FAILURE);
915 }else{
-
916 params.Lobes = atoi(lobes_str);
+
916 params.ScaleV= atof(scalev_str);
917 }
918
-
919 // * LobeDepth * //
-
920 pugi::xml_node lobedepth_node = p.child("LobeDepth");
+
919 // * ZScale * //
+
920 pugi::xml_node zscale_node = p.child("ZScale");
921
-
922 const char* lobedepth_str = lobedepth_node.child_value();
-
923 if( strlen(lobedepth_str)==0 ){
+
922 const char* zscale_str = zscale_node.child_value();
+
923 if( strlen(zscale_str)==0 ){
924 std::cout << "failed." << std::endl;
-
925 std::cerr << "ERROR (WeberPennTree::loadXML): LobeDepth was not given for tree " << label << "." << std::endl;
+
925 std::cerr << "ERROR (WeberPennTree::loadXML): ZScale was not given for tree " << label << "." << std::endl;
926 exit(EXIT_FAILURE);
927 }else{
-
928 params.LobeDepth = atof(lobedepth_str);
+
928 params.ZScale= atof(zscale_str);
929 }
930
-
931 // * Flare * //
-
932 pugi::xml_node flare_node = p.child("Flare");
+
931 // * ZScaleV * //
+
932 pugi::xml_node zscalev_node = p.child("ZScaleV");
933
-
934 const char* flare_str = flare_node.child_value();
-
935 if( strlen(flare_str)==0 ){
+
934 const char* zscalev_str = zscalev_node.child_value();
+
935 if( strlen(zscalev_str)==0 ){
936 std::cout << "failed." << std::endl;
-
937 std::cerr << "ERROR (WeberPennTree::loadXML): Flare was not given for tree " << label << "." << std::endl;
+
937 std::cerr << "ERROR (WeberPennTree::loadXML): ZScaleV was not given for tree " << label << "." << std::endl;
938 exit(EXIT_FAILURE);
939 }else{
-
940 params.Flare = atof(flare_str);
+
940 params.ZScaleV= atof(zscalev_str);
941 }
942
-
943 // * Levels * //
-
944 pugi::xml_node levels_node = p.child("Levels");
+
943 // * Ratio * //
+
944 pugi::xml_node ratio_node = p.child("Ratio");
945
-
946 const char* levels_str = levels_node.child_value();
-
947 if( strlen(levels_str)==0 ){
+
946 const char* ratio_str = ratio_node.child_value();
+
947 if( strlen(ratio_str)==0 ){
948 std::cout << "failed." << std::endl;
-
949 std::cerr << "ERROR (WeberPennTree::loadXML): Levels was not given for tree " << label << "." << std::endl;
+
949 std::cerr << "ERROR (WeberPennTree::loadXML): Ratio was not given for tree " << label << "." << std::endl;
950 exit(EXIT_FAILURE);
951 }else{
-
952 params.Levels = atoi(levels_str);
+
952 params.Ratio = atof(ratio_str);
953 }
954
-
955 int endLevel;
-
956 if( params.Levels==4 ){
-
957 endLevel=4;
-
958 }else{
-
959 endLevel=params.Levels+1;
-
960 }
-
961
-
962
-
963 // * nSegSplits * //
-
964 pugi::xml_node nsegsplits_node = p.child("nSegSplits");
-
965
-
966 const char* nsegsplits_str = nsegsplits_node.child_value();
-
967 if( strlen(nsegsplits_str)==0 ){
-
968 std::cout << "failed." << std::endl;
-
969 std::cerr << "ERROR (WeberPennTree::loadXML): nSegSplits was not given for tree " << label << "." << std::endl;
-
970 exit(EXIT_FAILURE);
-
971 }
-
972
-
973
-
974 params.nSegSplits.resize(4);
-
975 std::istringstream nsegsplits_stream(nsegsplits_str);
-
976 for( int i=0; i<endLevel; i++ ){
-
977 if( nsegsplits_stream.peek()==EOF ){
-
978 std::cerr << "ERROR (WeberPennTree::loadXML): nSegSplits was not given for level " << i << " of tree " << label << "." << std::endl;
-
979 exit(EXIT_FAILURE);
-
980 }else{
-
981 nsegsplits_stream >> params.nSegSplits.at(i);
-
982 }
-
983 }
-
984
-
985 // * nSplitAngle * //
-
986 pugi::xml_node nsplitangle_node = p.child("nSplitAngle");
-
987
-
988 const char* nsplitangle_str = nsplitangle_node.child_value();
-
989 if( strlen(nsplitangle_str)==0 ){
-
990 std::cout << "failed." << std::endl;
-
991 std::cerr << "ERROR (WeberPennTree::loadXML): nSplitAngle was not given for tree " << label << "." << std::endl;
-
992 exit(EXIT_FAILURE);
-
993 }
-
994
-
995
-
996 params.nSplitAngle.resize(4);
-
997 std::istringstream nsplitangle_stream(nsplitangle_str);
-
998 for( int i=0; i<endLevel; i++ ){
-
999 if( nsplitangle_stream.peek()==EOF ){
-
1000 std::cerr << "ERROR (WeberPennTree::loadXML): nSplitAngle was not given for level " << i << " of tree " << label << "." << std::endl;
-
1001 exit(EXIT_FAILURE);
-
1002 }else{
-
1003 nsplitangle_stream >> params.nSplitAngle.at(i);
-
1004 }
-
1005 }
-
1006
-
1007 // * nSplitAngleV * //
-
1008 pugi::xml_node nsplitanglev_node = p.child("nSplitAngleV");
-
1009
-
1010 const char* nsplitanglev_str = nsplitanglev_node.child_value();
-
1011 if( strlen(nsplitanglev_str)==0 ){
-
1012 std::cout << "failed." << std::endl;
-
1013 std::cerr << "ERROR (WeberPennTree::loadXML): nSplitAngleV was not given for tree " << label << "." << std::endl;
-
1014 exit(EXIT_FAILURE);
-
1015 }
-
1016
-
1017
-
1018 params.nSplitAngleV.resize(4);
-
1019 std::istringstream nsplitanglev_stream(nsplitanglev_str);
-
1020 for( int i=0; i<endLevel; i++ ){
-
1021 if( nsplitanglev_stream.peek()==EOF ){
-
1022 std::cerr << "ERROR (WeberPennTree::loadXML): nSplitAngleV was not given for level " << i << " of tree " << label << "." << std::endl;
-
1023 exit(EXIT_FAILURE);
-
1024 }else{
-
1025 nsplitanglev_stream >> params.nSplitAngleV.at(i);
-
1026 }
-
1027 }
-
1028
-
1029 // * nCurveRes * //
-
1030 pugi::xml_node ncurveres_node = p.child("nCurveRes");
-
1031
-
1032 const char* ncurveres_str = ncurveres_node.child_value();
-
1033 if( strlen(ncurveres_str)==0 ){
-
1034 std::cout << "failed." << std::endl;
-
1035 std::cerr << "ERROR (WeberPennTree::loadXML): nCurveRes was not given for tree " << label << "." << std::endl;
-
1036 exit(EXIT_FAILURE);
-
1037 }
-
1038
-
1039
-
1040 params.nCurveRes.resize(4);
-
1041 std::istringstream ncurveres_stream(ncurveres_str);
-
1042 for( int i=0; i<endLevel; i++ ){
-
1043 if( ncurveres_stream.peek()==EOF ){
-
1044 std::cerr << "ERROR (WeberPennTree::loadXML): nCurveRes was not given for level " << i << " of tree " << label << "." << std::endl;
-
1045 exit(EXIT_FAILURE);
-
1046 }else{
-
1047 ncurveres_stream >> params.nCurveRes.at(i);
-
1048 }
-
1049 }
-
1050
-
1051 // * nCurve * //
-
1052 pugi::xml_node ncurve_node = p.child("nCurve");
-
1053
-
1054 const char* ncurve_str = ncurve_node.child_value();
-
1055 if( strlen(ncurve_str)==0 ){
-
1056 std::cout << "failed." << std::endl;
-
1057 std::cerr << "ERROR (WeberPennTree::loadXML): nCurve was not given for tree " << label << "." << std::endl;
-
1058 exit(EXIT_FAILURE);
-
1059 }
-
1060
-
1061
-
1062 params.nCurve.resize(4);
-
1063 std::istringstream ncurve_stream(ncurve_str);
-
1064 for( int i=0; i<endLevel; i++ ){
-
1065 if( ncurve_stream.peek()==EOF ){
-
1066 std::cerr << "ERROR (WeberPennTree::loadXML): nCurve was not given for level " << i << " of tree " << label << "." << std::endl;
-
1067 exit(EXIT_FAILURE);
-
1068 }else{
-
1069 ncurve_stream >> params.nCurve.at(i);
-
1070 }
-
1071 }
-
1072
-
1073 // * nCurveV * //
-
1074 pugi::xml_node ncurvev_node = p.child("nCurveV");
-
1075
-
1076 const char* ncurvev_str = ncurvev_node.child_value();
-
1077 if( strlen(ncurvev_str)==0 ){
-
1078 std::cout << "failed." << std::endl;
-
1079 std::cerr << "ERROR (WeberPennTree::loadXML): nCurveV was not given for tree " << label << "." << std::endl;
-
1080 exit(EXIT_FAILURE);
-
1081 }
-
1082
-
1083
-
1084 params.nCurveV.resize(4);
-
1085 std::istringstream ncurvev_stream(ncurvev_str);
-
1086 for( int i=0; i<endLevel; i++ ){
-
1087 if( ncurvev_stream.peek()==EOF ){
-
1088 std::cerr << "ERROR (WeberPennTree::loadXML): nCurveV was not given for level " << i << " of tree " << label << "." << std::endl;
-
1089 exit(EXIT_FAILURE);
-
1090 }else{
-
1091 ncurvev_stream >> params.nCurveV.at(i);
-
1092 }
-
1093 }
-
1094
-
1095 // * nCurveBack * //
-
1096 pugi::xml_node ncurveback_node = p.child("nCurveBack");
-
1097
-
1098 const char* ncurveback_str = ncurveback_node.child_value();
-
1099 if( strlen(ncurveback_str)==0 ){
-
1100 std::cout << "failed." << std::endl;
-
1101 std::cerr << "ERROR (WeberPennTree::loadXML): nCurveBack was not given for tree " << label << "." << std::endl;
-
1102 exit(EXIT_FAILURE);
-
1103 }
-
1104
-
1105
-
1106 params.nCurveBack.resize(4);
-
1107 std::istringstream ncurveback_stream(ncurveback_str);
-
1108 for( int i=0; i<endLevel; i++ ){
-
1109 if( ncurveback_stream.peek()==EOF ){
-
1110 std::cerr << "ERROR (WeberPennTree::loadXML): nCurveBack was not given for level " << i << " of tree " << label << "." << std::endl;
-
1111 exit(EXIT_FAILURE);
-
1112 }else{
-
1113 ncurveback_stream >> params.nCurveBack.at(i);
-
1114 }
-
1115 }
-
1116
-
1117 // * nLength * //
-
1118 pugi::xml_node nlength_node = p.child("nLength");
-
1119
-
1120 const char* nlength_str = nlength_node.child_value();
-
1121 if( strlen(nlength_str)==0 ){
-
1122 std::cout << "failed." << std::endl;
-
1123 std::cerr << "ERROR (WeberPennTree::loadXML): nLength was not given for tree " << label << "." << std::endl;
-
1124 exit(EXIT_FAILURE);
-
1125 }
-
1126
-
1127
-
1128 params.nLength.resize(4);
-
1129 std::istringstream nlength_stream(nlength_str);
-
1130 for( int i=0; i<endLevel; i++ ){
-
1131 if( nlength_stream.peek()==EOF ){
-
1132 std::cerr << "ERROR (WeberPennTree::loadXML): nLength was not given for level " << i << " of tree " << label << "." << std::endl;
-
1133 exit(EXIT_FAILURE);
-
1134 }else{
-
1135 nlength_stream >> params.nLength.at(i);
-
1136 }
-
1137 }
-
1138
-
1139 // * nLengthV * //
-
1140 pugi::xml_node nlengthv_node = p.child("nLengthV");
-
1141
-
1142 const char* nlengthv_str = nlengthv_node.child_value();
-
1143 if( strlen(nlengthv_str)==0 ){
-
1144 std::cout << "failed." << std::endl;
-
1145 std::cerr << "ERROR (WeberPennTree::loadXML): nLengthV was not given for tree " << label << "." << std::endl;
-
1146 exit(EXIT_FAILURE);
-
1147 }
-
1148
-
1149
-
1150 params.nLengthV.resize(4);
-
1151 std::istringstream nlengthv_stream(nlengthv_str);
-
1152 for( int i=0; i<endLevel; i++ ){
-
1153 if( nlengthv_stream.peek()==EOF ){
-
1154 std::cerr << "ERROR (WeberPennTree::loadXML): nLengthV was not given for level " << i << " of tree " << label << "." << std::endl;
-
1155 exit(EXIT_FAILURE);
-
1156 }else{
-
1157 nlengthv_stream >> params.nLengthV.at(i);
-
1158 }
-
1159 }
-
1160
-
1161 // * nTaper * //
-
1162 pugi::xml_node ntaper_node = p.child("nTaper");
-
1163
-
1164 const char* ntaper_str = ntaper_node.child_value();
-
1165 if( strlen(ntaper_str)==0 ){
-
1166 std::cout << "failed." << std::endl;
-
1167 std::cerr << "ERROR (WeberPennTree::loadXML): nTaper was not given for tree " << label << "." << std::endl;
-
1168 exit(EXIT_FAILURE);
-
1169 }
-
1170
-
1171
-
1172 params.nTaper.resize(4);
-
1173 std::istringstream ntaper_stream(ntaper_str);
-
1174 for( int i=0; i<endLevel; i++ ){
-
1175 if( ntaper_stream.peek()==EOF ){
-
1176 std::cerr << "ERROR (WeberPennTree::loadXML): nTaper was not given for level " << i << " of tree " << label << "." << std::endl;
-
1177 exit(EXIT_FAILURE);
-
1178 }else{
-
1179 ntaper_stream >> params.nTaper.at(i);
-
1180 }
-
1181 }
-
1182
-
1183 // * nDownAngle * //
-
1184 pugi::xml_node ndownangle_node = p.child("nDownAngle");
-
1185
-
1186 const char* ndownangle_str = ndownangle_node.child_value();
-
1187 if( strlen(ndownangle_str)==0 ){
-
1188 std::cout << "failed." << std::endl;
-
1189 std::cerr << "ERROR (WeberPennTree::loadXML): nDownAngle was not given for tree " << label << "." << std::endl;
-
1190 exit(EXIT_FAILURE);
-
1191 }
-
1192
-
1193
-
1194 params.nDownAngle.resize(4);
-
1195 std::istringstream ndownangle_stream(ndownangle_str);
-
1196 for( int i=0; i<endLevel; i++ ){
-
1197 if( ndownangle_stream.peek()==EOF ){
-
1198 std::cerr << "ERROR (WeberPennTree::loadXML): nDownAngle was not given for level " << i << " of tree " << label << "." << std::endl;
-
1199 exit(EXIT_FAILURE);
-
1200 }else{
-
1201 ndownangle_stream >> params.nDownAngle.at(i);
-
1202 }
-
1203 }
-
1204
-
1205 // * nDownAngleV * //
-
1206 pugi::xml_node ndownanglev_node = p.child("nDownAngleV");
-
1207
-
1208 const char* ndownanglev_str = ndownanglev_node.child_value();
-
1209 if( strlen(ndownanglev_str)==0 ){
-
1210 std::cout << "failed." << std::endl;
-
1211 std::cerr << "ERROR (WeberPennTree::loadXML): nDownAngleV was not given for tree " << label << "." << std::endl;
-
1212 exit(EXIT_FAILURE);
-
1213 }
-
1214
-
1215
-
1216 params.nDownAngleV.resize(4);
-
1217 std::istringstream ndownanglev_stream(ndownanglev_str);
-
1218 for( int i=0; i<endLevel; i++ ){
-
1219 if( ndownanglev_stream.peek()==EOF ){
-
1220 std::cerr << "ERROR (WeberPennTree::loadXML): nDownAngleV was not given for level " << i << " of tree " << label << "." << std::endl;
-
1221 exit(EXIT_FAILURE);
-
1222 }else{
-
1223 ndownanglev_stream >> params.nDownAngleV.at(i);
-
1224 }
-
1225 }
-
1226
-
1227 // * nRotate * //
-
1228 pugi::xml_node nrotate_node = p.child("nRotate");
-
1229
-
1230 const char* nrotate_str = nrotate_node.child_value();
-
1231 if( strlen(nrotate_str)==0 ){
-
1232 std::cout << "failed." << std::endl;
-
1233 std::cerr << "ERROR (WeberPennTree::loadXML): nRotate was not given for tree " << label << "." << std::endl;
-
1234 exit(EXIT_FAILURE);
-
1235 }
-
1236
-
1237
-
1238 params.nRotate.resize(4);
-
1239 std::istringstream nrotate_stream(nrotate_str);
-
1240 for( int i=0; i<endLevel; i++ ){
-
1241 if( nrotate_stream.peek()==EOF ){
-
1242 std::cerr << "ERROR (WeberPennTree::loadXML): nRotate was not given for level " << i << " of tree " << label << "." << std::endl;
-
1243 exit(EXIT_FAILURE);
-
1244 }else{
-
1245 nrotate_stream >> params.nRotate.at(i);
-
1246 }
-
1247 }
-
1248
-
1249 // * nRotateV * //
-
1250 pugi::xml_node nrotatev_node = p.child("nRotateV");
-
1251
-
1252 const char* nrotatev_str = nrotatev_node.child_value();
-
1253 if( strlen(nrotatev_str)==0 ){
-
1254 std::cout << "failed." << std::endl;
-
1255 std::cerr << "ERROR (WeberPennTree::loadXML): nRotateV was not given for tree " << label << "." << std::endl;
-
1256 exit(EXIT_FAILURE);
-
1257 }
-
1258
-
1259
-
1260 params.nRotateV.resize(4);
-
1261 std::istringstream nrotatev_stream(nrotatev_str);
-
1262 for( int i=0; i<endLevel; i++ ){
-
1263 if( nrotatev_stream.peek()==EOF ){
-
1264 std::cerr << "ERROR (WeberPennTree::loadXML): nRotateV was not given for level " << i << " of tree " << label << "." << std::endl;
-
1265 exit(EXIT_FAILURE);
-
1266 }else{
-
1267 nrotatev_stream >> params.nRotateV.at(i);
-
1268 }
-
1269 }
-
1270
-
1271 // * nBranches * //
-
1272 pugi::xml_node nbranches_node = p.child("nBranches");
-
1273
-
1274 const char* nbranches_str = nbranches_node.child_value();
-
1275 if( strlen(nbranches_str)==0 ){
-
1276 std::cout << "failed." << std::endl;
-
1277 std::cerr << "ERROR (WeberPennTree::loadXML): nBranches was not given for tree " << label << "." << std::endl;
-
1278 exit(EXIT_FAILURE);
-
1279 }
-
1280
-
1281
-
1282 params.nBranches.resize(4);
-
1283 std::istringstream nbranches_stream(nbranches_str);
-
1284 for( int i=0; i<endLevel; i++ ){
-
1285 if( nbranches_stream.peek()==EOF ){
-
1286 std::cerr << "ERROR (WeberPennTree::loadXML): nBranches was not given for level " << i << " of tree " << label << "." << std::endl;
-
1287 exit(EXIT_FAILURE);
-
1288 }else{
-
1289 nbranches_stream >> params.nBranches.at(i);
-
1290 }
-
1291 }
-
1292
-
1293 // * Leaves * //
-
1294 pugi::xml_node leaves_node = p.child("Leaves");
-
1295
-
1296 const char* leaves_str = leaves_node.child_value();
-
1297 if( strlen(leaves_str)==0 ){
-
1298 std::cout << "failed." << std::endl;
-
1299 std::cerr << "ERROR (WeberPennTree::loadXML): Leaves was not given for tree " << label << "." << std::endl;
-
1300 exit(EXIT_FAILURE);
-
1301 }else{
-
1302 params.Leaves = atoi(leaves_str);
-
1303 }
-
1304
-
1305 // * LeafFile * //
-
1306 pugi::xml_node leaffile_node = p.child("LeafFile");
-
1307
-
1308 std::string leaffile_str = deblank(leaffile_node.child_value());
-
1309 if( leaffile_str.empty() ){
-
1310 std::cout << "failed." << std::endl;
-
1311 std::cerr << "ERROR (WeberPennTree::loadXML): LeafFile was not given for tree " << label << "." << std::endl;
-
1312 exit(EXIT_FAILURE);
-
1313 }else{
-
1314 params.LeafFile = leaffile_str;
-
1315 }
-
1316
-
1317 // * LeafScale * //
-
1318 pugi::xml_node leafscale_node = p.child("LeafScale");
-
1319
-
1320 const char* leafscale_str = leafscale_node.child_value();
-
1321 if( strlen(leafscale_str)==0 ){
-
1322 std::cout << "failed." << std::endl;
-
1323 std::cerr << "ERROR (WeberPennTree::loadXML): LeafScale was not given for tree " << label << "." << std::endl;
-
1324 exit(EXIT_FAILURE);
-
1325 }else{
-
1326 params.LeafScale = atof(leafscale_str);
-
1327 }
-
1328
-
1329 // * LeafScaleX * //
-
1330 pugi::xml_node leafscalex_node = p.child("LeafScaleX");
-
1331
-
1332 const char* leafscalex_str = leafscalex_node.child_value();
-
1333 if( strlen(leafscalex_str)==0 ){
-
1334 std::cout << "failed." << std::endl;
-
1335 std::cerr << "ERROR (WeberPennTree::loadXML): LeafScaleX was not given for tree " << label << "." << std::endl;
-
1336 exit(EXIT_FAILURE);
-
1337 }else{
-
1338 params.LeafScaleX = atof(leafscalex_str);
+
955 // * RatioPower * //
+
956 pugi::xml_node ratiopower_node = p.child("RatioPower");
+
957
+
958 const char* ratiopower_str = ratiopower_node.child_value();
+
959 if( strlen(ratiopower_str)==0 ){
+
960 std::cout << "failed." << std::endl;
+
961 std::cerr << "ERROR (WeberPennTree::loadXML): RatioPower was not given for tree " << label << "." << std::endl;
+
962 exit(EXIT_FAILURE);
+
963 }else{
+
964 params.RatioPower = atof(ratiopower_str);
+
965 }
+
966
+
967 // * Lobes * //
+
968 pugi::xml_node lobes_node = p.child("Lobes");
+
969
+
970 const char* lobes_str = lobes_node.child_value();
+
971 if( strlen(lobes_str)==0 ){
+
972 std::cout << "failed." << std::endl;
+
973 std::cerr << "ERROR (WeberPennTree::loadXML): Lobes was not given for tree " << label << "." << std::endl;
+
974 exit(EXIT_FAILURE);
+
975 }else{
+
976 params.Lobes = atoi(lobes_str);
+
977 }
+
978
+
979 // * LobeDepth * //
+
980 pugi::xml_node lobedepth_node = p.child("LobeDepth");
+
981
+
982 const char* lobedepth_str = lobedepth_node.child_value();
+
983 if( strlen(lobedepth_str)==0 ){
+
984 std::cout << "failed." << std::endl;
+
985 std::cerr << "ERROR (WeberPennTree::loadXML): LobeDepth was not given for tree " << label << "." << std::endl;
+
986 exit(EXIT_FAILURE);
+
987 }else{
+
988 params.LobeDepth = atof(lobedepth_str);
+
989 }
+
990
+
991 // * Flare * //
+
992 pugi::xml_node flare_node = p.child("Flare");
+
993
+
994 const char* flare_str = flare_node.child_value();
+
995 if( strlen(flare_str)==0 ){
+
996 std::cout << "failed." << std::endl;
+
997 std::cerr << "ERROR (WeberPennTree::loadXML): Flare was not given for tree " << label << "." << std::endl;
+
998 exit(EXIT_FAILURE);
+
999 }else{
+
1000 params.Flare = atof(flare_str);
+
1001 }
+
1002
+
1003 // * Levels * //
+
1004 pugi::xml_node levels_node = p.child("Levels");
+
1005
+
1006 const char* levels_str = levels_node.child_value();
+
1007 if( strlen(levels_str)==0 ){
+
1008 std::cout << "failed." << std::endl;
+
1009 std::cerr << "ERROR (WeberPennTree::loadXML): Levels was not given for tree " << label << "." << std::endl;
+
1010 exit(EXIT_FAILURE);
+
1011 }else{
+
1012 params.Levels = atoi(levels_str);
+
1013 }
+
1014
+
1015 int endLevel;
+
1016 if( params.Levels==4 ){
+
1017 endLevel=4;
+
1018 }else{
+
1019 endLevel=params.Levels+1;
+
1020 }
+
1021
+
1022
+
1023 // * nSegSplits * //
+
1024 pugi::xml_node nsegsplits_node = p.child("nSegSplits");
+
1025
+
1026 const char* nsegsplits_str = nsegsplits_node.child_value();
+
1027 if( strlen(nsegsplits_str)==0 ){
+
1028 std::cout << "failed." << std::endl;
+
1029 std::cerr << "ERROR (WeberPennTree::loadXML): nSegSplits was not given for tree " << label << "." << std::endl;
+
1030 exit(EXIT_FAILURE);
+
1031 }
+
1032
+
1033
+
1034 params.nSegSplits.resize(4);
+
1035 std::istringstream nsegsplits_stream(nsegsplits_str);
+
1036 for( int i=0; i<endLevel; i++ ){
+
1037 if( nsegsplits_stream.peek()==EOF ){
+
1038 std::cerr << "ERROR (WeberPennTree::loadXML): nSegSplits was not given for level " << i << " of tree " << label << "." << std::endl;
+
1039 exit(EXIT_FAILURE);
+
1040 }else{
+
1041 nsegsplits_stream >> params.nSegSplits.at(i);
+
1042 }
+
1043 }
+
1044
+
1045 // * nSplitAngle * //
+
1046 pugi::xml_node nsplitangle_node = p.child("nSplitAngle");
+
1047
+
1048 const char* nsplitangle_str = nsplitangle_node.child_value();
+
1049 if( strlen(nsplitangle_str)==0 ){
+
1050 std::cout << "failed." << std::endl;
+
1051 std::cerr << "ERROR (WeberPennTree::loadXML): nSplitAngle was not given for tree " << label << "." << std::endl;
+
1052 exit(EXIT_FAILURE);
+
1053 }
+
1054
+
1055
+
1056 params.nSplitAngle.resize(4);
+
1057 std::istringstream nsplitangle_stream(nsplitangle_str);
+
1058 for( int i=0; i<endLevel; i++ ){
+
1059 if( nsplitangle_stream.peek()==EOF ){
+
1060 std::cerr << "ERROR (WeberPennTree::loadXML): nSplitAngle was not given for level " << i << " of tree " << label << "." << std::endl;
+
1061 exit(EXIT_FAILURE);
+
1062 }else{
+
1063 nsplitangle_stream >> params.nSplitAngle.at(i);
+
1064 }
+
1065 }
+
1066
+
1067 // * nSplitAngleV * //
+
1068 pugi::xml_node nsplitanglev_node = p.child("nSplitAngleV");
+
1069
+
1070 const char* nsplitanglev_str = nsplitanglev_node.child_value();
+
1071 if( strlen(nsplitanglev_str)==0 ){
+
1072 std::cout << "failed." << std::endl;
+
1073 std::cerr << "ERROR (WeberPennTree::loadXML): nSplitAngleV was not given for tree " << label << "." << std::endl;
+
1074 exit(EXIT_FAILURE);
+
1075 }
+
1076
+
1077
+
1078 params.nSplitAngleV.resize(4);
+
1079 std::istringstream nsplitanglev_stream(nsplitanglev_str);
+
1080 for( int i=0; i<endLevel; i++ ){
+
1081 if( nsplitanglev_stream.peek()==EOF ){
+
1082 std::cerr << "ERROR (WeberPennTree::loadXML): nSplitAngleV was not given for level " << i << " of tree " << label << "." << std::endl;
+
1083 exit(EXIT_FAILURE);
+
1084 }else{
+
1085 nsplitanglev_stream >> params.nSplitAngleV.at(i);
+
1086 }
+
1087 }
+
1088
+
1089 // * nCurveRes * //
+
1090 pugi::xml_node ncurveres_node = p.child("nCurveRes");
+
1091
+
1092 const char* ncurveres_str = ncurveres_node.child_value();
+
1093 if( strlen(ncurveres_str)==0 ){
+
1094 std::cout << "failed." << std::endl;
+
1095 std::cerr << "ERROR (WeberPennTree::loadXML): nCurveRes was not given for tree " << label << "." << std::endl;
+
1096 exit(EXIT_FAILURE);
+
1097 }
+
1098
+
1099
+
1100 params.nCurveRes.resize(4);
+
1101 std::istringstream ncurveres_stream(ncurveres_str);
+
1102 for( int i=0; i<endLevel; i++ ){
+
1103 if( ncurveres_stream.peek()==EOF ){
+
1104 std::cerr << "ERROR (WeberPennTree::loadXML): nCurveRes was not given for level " << i << " of tree " << label << "." << std::endl;
+
1105 exit(EXIT_FAILURE);
+
1106 }else{
+
1107 ncurveres_stream >> params.nCurveRes.at(i);
+
1108 }
+
1109 }
+
1110
+
1111 // * nCurve * //
+
1112 pugi::xml_node ncurve_node = p.child("nCurve");
+
1113
+
1114 const char* ncurve_str = ncurve_node.child_value();
+
1115 if( strlen(ncurve_str)==0 ){
+
1116 std::cout << "failed." << std::endl;
+
1117 std::cerr << "ERROR (WeberPennTree::loadXML): nCurve was not given for tree " << label << "." << std::endl;
+
1118 exit(EXIT_FAILURE);
+
1119 }
+
1120
+
1121
+
1122 params.nCurve.resize(4);
+
1123 std::istringstream ncurve_stream(ncurve_str);
+
1124 for( int i=0; i<endLevel; i++ ){
+
1125 if( ncurve_stream.peek()==EOF ){
+
1126 std::cerr << "ERROR (WeberPennTree::loadXML): nCurve was not given for level " << i << " of tree " << label << "." << std::endl;
+
1127 exit(EXIT_FAILURE);
+
1128 }else{
+
1129 ncurve_stream >> params.nCurve.at(i);
+
1130 }
+
1131 }
+
1132
+
1133 // * nCurveV * //
+
1134 pugi::xml_node ncurvev_node = p.child("nCurveV");
+
1135
+
1136 const char* ncurvev_str = ncurvev_node.child_value();
+
1137 if( strlen(ncurvev_str)==0 ){
+
1138 std::cout << "failed." << std::endl;
+
1139 std::cerr << "ERROR (WeberPennTree::loadXML): nCurveV was not given for tree " << label << "." << std::endl;
+
1140 exit(EXIT_FAILURE);
+
1141 }
+
1142
+
1143
+
1144 params.nCurveV.resize(4);
+
1145 std::istringstream ncurvev_stream(ncurvev_str);
+
1146 for( int i=0; i<endLevel; i++ ){
+
1147 if( ncurvev_stream.peek()==EOF ){
+
1148 std::cerr << "ERROR (WeberPennTree::loadXML): nCurveV was not given for level " << i << " of tree " << label << "." << std::endl;
+
1149 exit(EXIT_FAILURE);
+
1150 }else{
+
1151 ncurvev_stream >> params.nCurveV.at(i);
+
1152 }
+
1153 }
+
1154
+
1155 // * nCurveBack * //
+
1156 pugi::xml_node ncurveback_node = p.child("nCurveBack");
+
1157
+
1158 const char* ncurveback_str = ncurveback_node.child_value();
+
1159 if( strlen(ncurveback_str)==0 ){
+
1160 std::cout << "failed." << std::endl;
+
1161 std::cerr << "ERROR (WeberPennTree::loadXML): nCurveBack was not given for tree " << label << "." << std::endl;
+
1162 exit(EXIT_FAILURE);
+
1163 }
+
1164
+
1165
+
1166 params.nCurveBack.resize(4);
+
1167 std::istringstream ncurveback_stream(ncurveback_str);
+
1168 for( int i=0; i<endLevel; i++ ){
+
1169 if( ncurveback_stream.peek()==EOF ){
+
1170 std::cerr << "ERROR (WeberPennTree::loadXML): nCurveBack was not given for level " << i << " of tree " << label << "." << std::endl;
+
1171 exit(EXIT_FAILURE);
+
1172 }else{
+
1173 ncurveback_stream >> params.nCurveBack.at(i);
+
1174 }
+
1175 }
+
1176
+
1177 // * nLength * //
+
1178 pugi::xml_node nlength_node = p.child("nLength");
+
1179
+
1180 const char* nlength_str = nlength_node.child_value();
+
1181 if( strlen(nlength_str)==0 ){
+
1182 std::cout << "failed." << std::endl;
+
1183 std::cerr << "ERROR (WeberPennTree::loadXML): nLength was not given for tree " << label << "." << std::endl;
+
1184 exit(EXIT_FAILURE);
+
1185 }
+
1186
+
1187
+
1188 params.nLength.resize(4);
+
1189 std::istringstream nlength_stream(nlength_str);
+
1190 for( int i=0; i<endLevel; i++ ){
+
1191 if( nlength_stream.peek()==EOF ){
+
1192 std::cerr << "ERROR (WeberPennTree::loadXML): nLength was not given for level " << i << " of tree " << label << "." << std::endl;
+
1193 exit(EXIT_FAILURE);
+
1194 }else{
+
1195 nlength_stream >> params.nLength.at(i);
+
1196 }
+
1197 }
+
1198
+
1199 // * nLengthV * //
+
1200 pugi::xml_node nlengthv_node = p.child("nLengthV");
+
1201
+
1202 const char* nlengthv_str = nlengthv_node.child_value();
+
1203 if( strlen(nlengthv_str)==0 ){
+
1204 std::cout << "failed." << std::endl;
+
1205 std::cerr << "ERROR (WeberPennTree::loadXML): nLengthV was not given for tree " << label << "." << std::endl;
+
1206 exit(EXIT_FAILURE);
+
1207 }
+
1208
+
1209
+
1210 params.nLengthV.resize(4);
+
1211 std::istringstream nlengthv_stream(nlengthv_str);
+
1212 for( int i=0; i<endLevel; i++ ){
+
1213 if( nlengthv_stream.peek()==EOF ){
+
1214 std::cerr << "ERROR (WeberPennTree::loadXML): nLengthV was not given for level " << i << " of tree " << label << "." << std::endl;
+
1215 exit(EXIT_FAILURE);
+
1216 }else{
+
1217 nlengthv_stream >> params.nLengthV.at(i);
+
1218 }
+
1219 }
+
1220
+
1221 // * nTaper * //
+
1222 pugi::xml_node ntaper_node = p.child("nTaper");
+
1223
+
1224 const char* ntaper_str = ntaper_node.child_value();
+
1225 if( strlen(ntaper_str)==0 ){
+
1226 std::cout << "failed." << std::endl;
+
1227 std::cerr << "ERROR (WeberPennTree::loadXML): nTaper was not given for tree " << label << "." << std::endl;
+
1228 exit(EXIT_FAILURE);
+
1229 }
+
1230
+
1231
+
1232 params.nTaper.resize(4);
+
1233 std::istringstream ntaper_stream(ntaper_str);
+
1234 for( int i=0; i<endLevel; i++ ){
+
1235 if( ntaper_stream.peek()==EOF ){
+
1236 std::cerr << "ERROR (WeberPennTree::loadXML): nTaper was not given for level " << i << " of tree " << label << "." << std::endl;
+
1237 exit(EXIT_FAILURE);
+
1238 }else{
+
1239 ntaper_stream >> params.nTaper.at(i);
+
1240 }
+
1241 }
+
1242
+
1243 // * nDownAngle * //
+
1244 pugi::xml_node ndownangle_node = p.child("nDownAngle");
+
1245
+
1246 const char* ndownangle_str = ndownangle_node.child_value();
+
1247 if( strlen(ndownangle_str)==0 ){
+
1248 std::cout << "failed." << std::endl;
+
1249 std::cerr << "ERROR (WeberPennTree::loadXML): nDownAngle was not given for tree " << label << "." << std::endl;
+
1250 exit(EXIT_FAILURE);
+
1251 }
+
1252
+
1253
+
1254 params.nDownAngle.resize(4);
+
1255 std::istringstream ndownangle_stream(ndownangle_str);
+
1256 for( int i=0; i<endLevel; i++ ){
+
1257 if( ndownangle_stream.peek()==EOF ){
+
1258 std::cerr << "ERROR (WeberPennTree::loadXML): nDownAngle was not given for level " << i << " of tree " << label << "." << std::endl;
+
1259 exit(EXIT_FAILURE);
+
1260 }else{
+
1261 ndownangle_stream >> params.nDownAngle.at(i);
+
1262 }
+
1263 }
+
1264
+
1265 // * nDownAngleV * //
+
1266 pugi::xml_node ndownanglev_node = p.child("nDownAngleV");
+
1267
+
1268 const char* ndownanglev_str = ndownanglev_node.child_value();
+
1269 if( strlen(ndownanglev_str)==0 ){
+
1270 std::cout << "failed." << std::endl;
+
1271 std::cerr << "ERROR (WeberPennTree::loadXML): nDownAngleV was not given for tree " << label << "." << std::endl;
+
1272 exit(EXIT_FAILURE);
+
1273 }
+
1274
+
1275
+
1276 params.nDownAngleV.resize(4);
+
1277 std::istringstream ndownanglev_stream(ndownanglev_str);
+
1278 for( int i=0; i<endLevel; i++ ){
+
1279 if( ndownanglev_stream.peek()==EOF ){
+
1280 std::cerr << "ERROR (WeberPennTree::loadXML): nDownAngleV was not given for level " << i << " of tree " << label << "." << std::endl;
+
1281 exit(EXIT_FAILURE);
+
1282 }else{
+
1283 ndownanglev_stream >> params.nDownAngleV.at(i);
+
1284 }
+
1285 }
+
1286
+
1287 // * nRotate * //
+
1288 pugi::xml_node nrotate_node = p.child("nRotate");
+
1289
+
1290 const char* nrotate_str = nrotate_node.child_value();
+
1291 if( strlen(nrotate_str)==0 ){
+
1292 std::cout << "failed." << std::endl;
+
1293 std::cerr << "ERROR (WeberPennTree::loadXML): nRotate was not given for tree " << label << "." << std::endl;
+
1294 exit(EXIT_FAILURE);
+
1295 }
+
1296
+
1297
+
1298 params.nRotate.resize(4);
+
1299 std::istringstream nrotate_stream(nrotate_str);
+
1300 for( int i=0; i<endLevel; i++ ){
+
1301 if( nrotate_stream.peek()==EOF ){
+
1302 std::cerr << "ERROR (WeberPennTree::loadXML): nRotate was not given for level " << i << " of tree " << label << "." << std::endl;
+
1303 exit(EXIT_FAILURE);
+
1304 }else{
+
1305 nrotate_stream >> params.nRotate.at(i);
+
1306 }
+
1307 }
+
1308
+
1309 // * nRotateV * //
+
1310 pugi::xml_node nrotatev_node = p.child("nRotateV");
+
1311
+
1312 const char* nrotatev_str = nrotatev_node.child_value();
+
1313 if( strlen(nrotatev_str)==0 ){
+
1314 std::cout << "failed." << std::endl;
+
1315 std::cerr << "ERROR (WeberPennTree::loadXML): nRotateV was not given for tree " << label << "." << std::endl;
+
1316 exit(EXIT_FAILURE);
+
1317 }
+
1318
+
1319
+
1320 params.nRotateV.resize(4);
+
1321 std::istringstream nrotatev_stream(nrotatev_str);
+
1322 for( int i=0; i<endLevel; i++ ){
+
1323 if( nrotatev_stream.peek()==EOF ){
+
1324 std::cerr << "ERROR (WeberPennTree::loadXML): nRotateV was not given for level " << i << " of tree " << label << "." << std::endl;
+
1325 exit(EXIT_FAILURE);
+
1326 }else{
+
1327 nrotatev_stream >> params.nRotateV.at(i);
+
1328 }
+
1329 }
+
1330
+
1331 // * nBranches * //
+
1332 pugi::xml_node nbranches_node = p.child("nBranches");
+
1333
+
1334 const char* nbranches_str = nbranches_node.child_value();
+
1335 if( strlen(nbranches_str)==0 ){
+
1336 std::cout << "failed." << std::endl;
+
1337 std::cerr << "ERROR (WeberPennTree::loadXML): nBranches was not given for tree " << label << "." << std::endl;
+
1338 exit(EXIT_FAILURE);
1339 }
-
1340
-
1341 // * WoodColor * //
-
1342 pugi::xml_node woodcolor_node = p.child("WoodColor");
-
1343
-
1344 const char* woodcolor_str = woodcolor_node.child_value();
-
1345 if( strlen(woodcolor_str)==0 ){
-
1346 params.WoodColor = make_RGBcolor(0.4,0.2,0.05);
-
1347 }else{
-
1348 RGBAcolor colort = string2RGBcolor(woodcolor_str);
-
1349 params.WoodColor = make_RGBcolor(colort.r,colort.g,colort.b);
-
1350 }
-
1351
-
1352 // * WoodFile * //
-
1353 pugi::xml_node woodfile_node = p.child("WoodFile");
-
1354
-
1355 std::string woodfile_str = deblank(woodfile_node.child_value());
-
1356 if( woodfile_str.empty() ){
-
1357 params.WoodFile = "none";
-
1358 }else{
-
1359 params.WoodFile = woodfile_str;
-
1360 }
-
1361
-
1362 // * leafAngleDist * //
-
1363 pugi::xml_node gL_node = p.child("LeafAngleDist");
+
1340
+
1341
+
1342 params.nBranches.resize(4);
+
1343 std::istringstream nbranches_stream(nbranches_str);
+
1344 for( int i=0; i<endLevel; i++ ){
+
1345 if( nbranches_stream.peek()==EOF ){
+
1346 std::cerr << "ERROR (WeberPennTree::loadXML): nBranches was not given for level " << i << " of tree " << label << "." << std::endl;
+
1347 exit(EXIT_FAILURE);
+
1348 }else{
+
1349 nbranches_stream >> params.nBranches.at(i);
+
1350 }
+
1351 }
+
1352
+
1353 // * Leaves * //
+
1354 pugi::xml_node leaves_node = p.child("Leaves");
+
1355
+
1356 const char* leaves_str = leaves_node.child_value();
+
1357 if( strlen(leaves_str)==0 ){
+
1358 std::cout << "failed." << std::endl;
+
1359 std::cerr << "ERROR (WeberPennTree::loadXML): Leaves was not given for tree " << label << "." << std::endl;
+
1360 exit(EXIT_FAILURE);
+
1361 }else{
+
1362 params.Leaves = atoi(leaves_str);
+
1363 }
1364
-
1365 const char* gL_string = gL_node.child_value();
-
1366 std::istringstream gL_stream(gL_string);
-
1367 std::vector<float> leafAngleDist;
-
1368 float tmp;
-
1369 while( gL_stream >> tmp ){
-
1370 leafAngleDist.push_back(tmp);
-
1371 }
-
1372 //calculate leaf angle CDF
-
1373 if( leafAngleDist.size()>0 ){
-
1374 float dTheta = M_PI/float(leafAngleDist.size());
-
1375 params.leafAngleCDF.resize( leafAngleDist.size() );
-
1376 float tsum = 0;
-
1377 for( int i=0; i<leafAngleDist.size(); i++ ){
-
1378 tsum += leafAngleDist.at(i)*dTheta;
-
1379 params.leafAngleCDF.at(i) = tsum;
-
1380 }
-
1381 if( fabs(tsum-1.f)>0.001 ){
-
1382 std::cout << "WARNING (WeberPennTree::loadXML): Leaf angle distribution for tree " << label << " does not sum to 1. Assuming isotropic." << std::endl;
-
1383 std::cout << params.leafAngleCDF.back() << std::endl;
-
1384 params.leafAngleCDF.resize(0);
-
1385 }else{
-
1386 params.leafAngleCDF.back() = 1.f;
-
1387 }
-
1388 }
-
1389
-
1390 //store the parameters
+
1365 // * LeafFile * //
+
1366 pugi::xml_node leaffile_node = p.child("LeafFile");
+
1367
+
1368 std::string leaffile_str = deblank(leaffile_node.child_value());
+
1369 if( leaffile_str.empty() ){
+
1370 std::cout << "failed." << std::endl;
+
1371 std::cerr << "ERROR (WeberPennTree::loadXML): LeafFile was not given for tree " << label << "." << std::endl;
+
1372 exit(EXIT_FAILURE);
+
1373 }else{
+
1374 params.LeafFile = leaffile_str;
+
1375 }
+
1376
+
1377 // * LeafScale * //
+
1378 pugi::xml_node leafscale_node = p.child("LeafScale");
+
1379
+
1380 const char* leafscale_str = leafscale_node.child_value();
+
1381 if( strlen(leafscale_str)==0 ){
+
1382 std::cout << "failed." << std::endl;
+
1383 std::cerr << "ERROR (WeberPennTree::loadXML): LeafScale was not given for tree " << label << "." << std::endl;
+
1384 exit(EXIT_FAILURE);
+
1385 }else{
+
1386 params.LeafScale = atof(leafscale_str);
+
1387 }
+
1388
+
1389 // * LeafScaleX * //
+
1390 pugi::xml_node leafscalex_node = p.child("LeafScaleX");
1391
-
1392 trees_library[label] = params;
-
1393
-
1394 }
-
1395
-
1396 if( tree_count==0 ){
-
1397 std::cout << "failed." << std::endl;
-
1398 std::cerr << "ERROR (WeberPennTree::loadXML): XML file " << filename << " did not contain any tree definitions." << std::endl;
-
1399 }else{
-
1400 std::cout << "done." << std::endl;
-
1401 std::cout << "Loaded " << tree_count << " tree definition(s)." << std::endl;
-
1402 }
+
1392 const char* leafscalex_str = leafscalex_node.child_value();
+
1393 if( strlen(leafscalex_str)==0 ){
+
1394 std::cout << "failed." << std::endl;
+
1395 std::cerr << "ERROR (WeberPennTree::loadXML): LeafScaleX was not given for tree " << label << "." << std::endl;
+
1396 exit(EXIT_FAILURE);
+
1397 }else{
+
1398 params.LeafScaleX = atof(leafscalex_str);
+
1399 }
+
1400
+
1401 // * WoodColor * //
+
1402 pugi::xml_node woodcolor_node = p.child("WoodColor");
1403
-
1404
-
1405}
+
1404 const char* woodcolor_str = woodcolor_node.child_value();
+
1405 if( strlen(woodcolor_str)==0 ){
+
1406 params.WoodColor = make_RGBcolor(0.4,0.2,0.05);
+
1407 }else{
+
1408 RGBAcolor colort = string2RGBcolor(woodcolor_str);
+
1409 params.WoodColor = make_RGBcolor(colort.r,colort.g,colort.b);
+
1410 }
+
1411
+
1412 // * WoodFile * //
+
1413 pugi::xml_node woodfile_node = p.child("WoodFile");
+
1414
+
1415 std::string woodfile_str = deblank(woodfile_node.child_value());
+
1416 if( woodfile_str.empty() ){
+
1417 params.WoodFile = "none";
+
1418 }else{
+
1419 params.WoodFile = woodfile_str;
+
1420 }
+
1421
+
1422 // * leafAngleDist * //
+
1423 pugi::xml_node gL_node = p.child("LeafAngleDist");
+
1424
+
1425 const char* gL_string = gL_node.child_value();
+
1426 std::istringstream gL_stream(gL_string);
+
1427 std::vector<float> leafAngleDist;
+
1428 float tmp;
+
1429 while( gL_stream >> tmp ){
+
1430 leafAngleDist.push_back(tmp);
+
1431 }
+
1432 //calculate leaf angle CDF
+
1433 if( leafAngleDist.size()>0 ){
+
1434 float dTheta = M_PI/float(leafAngleDist.size());
+
1435 params.leafAngleCDF.resize( leafAngleDist.size() );
+
1436 float tsum = 0;
+
1437 for( int i=0; i<leafAngleDist.size(); i++ ){
+
1438 tsum += leafAngleDist.at(i)*dTheta;
+
1439 params.leafAngleCDF.at(i) = tsum;
+
1440 }
+
1441 if( fabs(tsum-1.f)>0.001 ){
+
1442 std::cout << "WARNING (WeberPennTree::loadXML): Leaf angle distribution for tree " << label << " does not sum to 1. Assuming isotropic." << std::endl;
+
1443 std::cout << params.leafAngleCDF.back() << std::endl;
+
1444 params.leafAngleCDF.resize(0);
+
1445 }else{
+
1446 params.leafAngleCDF.back() = 1.f;
+
1447 }
+
1448 }
+
1449
+
1450 //store the parameters
+
1451
+
1452 trees_library[label] = params;
+
1453
+
1454 }
+
1455
+
1456 if( tree_count==0 ){
+
1457 std::cout << "failed." << std::endl;
+
1458 std::cerr << "ERROR (WeberPennTree::loadXML): XML file " << filename << " did not contain any tree definitions." << std::endl;
+
1459 }else{
+
1460 std::cout << "done." << std::endl;
+
1461 std::cout << "Loaded " << tree_count << " tree definition(s)." << std::endl;
+
1462 }
+
1463
+
1464
+
1465}
-
1406
-
-
1407void WeberPennTree::optionalOutputPrimitiveData( const char* label ){
-
1408
-
1409 if( strcmp(label,"element_type")==0 || strcmp(label,"branch_radius")==0 ){
-
1410 output_prim_data.push_back( label );
-
1411 }else{
-
1412 std::cout << "WARNING (WeberPennTree::optionalOutputPrimitiveData): unknown optional output primitive data " << label << std::endl;
-
1413 }
-
1414
-
1415}
+
1466
+
+
1467void WeberPennTree::optionalOutputPrimitiveData( const char* label ){
+
1468
+
1469 if( strcmp(label,"element_type")==0 || strcmp(label,"branch_radius")==0 ){
+
1470 output_prim_data.push_back( label );
+
1471 }else{
+
1472 std::cout << "WARNING (WeberPennTree::optionalOutputPrimitiveData): unknown optional output primitive data " << label << std::endl;
+
1473 }
+
1474
+
1475}
helios::HELIOS_TYPE_UINT
@ HELIOS_TYPE_UINT
unsigned integer data type
Definition Context.h:45
-
WeberPennTree::setLeafSubdivisions
void setLeafSubdivisions(const helios::int2 leaf_segs)
Set the number of sub-patch divisions for leaves.
Definition WeberPennTree.cpp:715
-
WeberPennTree::getAllUUIDs
std::vector< uint > getAllUUIDs(const uint TreeID)
Get the unique universal identifiers (UUIDs) for all primitives that make up the tree.
Definition WeberPennTree.cpp:681
-
WeberPennTree::loadXML
void loadXML(const char *filename)
Load tree library from an XML file.
Definition WeberPennTree.cpp:749
-
WeberPennTree::setTreeParameters
void setTreeParameters(const char *treename, const WeberPennTreeParameters parameters)
Set the architectural parameters for a tree in the currently loaded library.
Definition WeberPennTree.cpp:734
+
WeberPennTree::setLeafSubdivisions
void setLeafSubdivisions(const helios::int2 leaf_segs)
Set the number of sub-patch divisions for leaves.
Definition WeberPennTree.cpp:727
+
WeberPennTree::getAllUUIDs
std::vector< uint > getAllUUIDs(const uint TreeID)
Get the unique universal identifiers (UUIDs) for all primitives that make up the tree.
Definition WeberPennTree.cpp:693
+
WeberPennTree::loadXML
void loadXML(const char *filename)
Load tree library from an XML file.
Definition WeberPennTree.cpp:761
+
WeberPennTree::setTreeParameters
void setTreeParameters(const char *treename, const WeberPennTreeParameters parameters)
Set the architectural parameters for a tree in the currently loaded library.
Definition WeberPennTree.cpp:746
WeberPennTree::buildTree
uint buildTree(const char *treename, helios::vec3 origin)
Construct a Weber-Penn tree using a tree already in the library.
Definition WeberPennTree.cpp:81
WeberPennTree::WeberPennTree
WeberPennTree(helios::Context *context)
Weber-Penn Tree constructor.
Definition WeberPennTree.cpp:24
-
WeberPennTree::setBranchRecursionLevel
void setBranchRecursionLevel(const uint level)
Only create branch primitives up to a certain recursion level (leaves are still created for all level...
Definition WeberPennTree.cpp:695
-
WeberPennTree::getBranchUUIDs
std::vector< uint > getBranchUUIDs(const uint TreeID)
Get the unique universal identifiers (UUIDs) for the primitives that make up the tree branches.
Definition WeberPennTree.cpp:661
-
WeberPennTree::seedRandomGenerator
void seedRandomGenerator(const uint seed)
Seed the random number generator. This can be useful for generating repeatable trees,...
Definition WeberPennTree.cpp:745
-
WeberPennTree::setBranchSegmentResolution
void setBranchSegmentResolution(const uint branch_segs)
Set the radial triangle subdivisions for branches.
Definition WeberPennTree.cpp:707
+
WeberPennTree::setBranchRecursionLevel
void setBranchRecursionLevel(const uint level)
Only create branch primitives up to a certain recursion level (leaves are still created for all level...
Definition WeberPennTree.cpp:707
+
WeberPennTree::getBranchUUIDs
std::vector< uint > getBranchUUIDs(const uint TreeID)
Get the unique universal identifiers (UUIDs) for the primitives that make up the tree branches.
Definition WeberPennTree.cpp:673
+
WeberPennTree::seedRandomGenerator
void seedRandomGenerator(const uint seed)
Seed the random number generator. This can be useful for generating repeatable trees,...
Definition WeberPennTree.cpp:757
+
WeberPennTree::setBranchSegmentResolution
void setBranchSegmentResolution(const uint branch_segs)
Set the radial triangle subdivisions for branches.
Definition WeberPennTree.cpp:719
WeberPennTree::selfTest
int selfTest(void)
Unit testing routine.
Definition WeberPennTree.cpp:44
-
WeberPennTree::getTreeParameters
WeberPennTreeParameters getTreeParameters(const char *treename)
Get the architectural parameters for a tree in the currently loaded library.
Definition WeberPennTree.cpp:723
-
WeberPennTree::getTrunkUUIDs
std::vector< uint > getTrunkUUIDs(const uint TreeID)
Get the unique universal identifiers (UUIDs) for the primitives that make up the tree trunk.
Definition WeberPennTree.cpp:651
-
WeberPennTree::setTrunkSegmentResolution
void setTrunkSegmentResolution(const uint trunk_segs)
Set the radial triangle subdivisions for trunks.
Definition WeberPennTree.cpp:699
-
WeberPennTree::optionalOutputPrimitiveData
void optionalOutputPrimitiveData(const char *label)
Add optional output primitive data values to the Context.
Definition WeberPennTree.cpp:1407
-
WeberPennTree::getLeafUUIDs
std::vector< uint > getLeafUUIDs(const uint TreeID)
Get the unique universal identifiers (UUIDs) for the primitives that make up the tree leaves.
Definition WeberPennTree.cpp:671
-
helios::CompoundObject::rotate
void rotate(float rotation_radians, const char *rotation_axis_xyz_string)
Method to rotate a Compound Object about the x-, y-, or z-axis.
Definition Context.cpp:2362
-
helios::CompoundObject::translate
void translate(const helios::vec3 &shift)
Method to translate/shift a Compound Object.
Definition Context.cpp:2338
-
helios::CompoundObject::getPrimitiveUUIDs
std::vector< uint > getPrimitiveUUIDs() const
Get the UUIDs for all primitives contained in the object.
Definition Context.cpp:2241
+
WeberPennTree::getTreeParameters
WeberPennTreeParameters getTreeParameters(const char *treename)
Get the architectural parameters for a tree in the currently loaded library.
Definition WeberPennTree.cpp:735
+
WeberPennTree::getTrunkUUIDs
std::vector< uint > getTrunkUUIDs(const uint TreeID)
Get the unique universal identifiers (UUIDs) for the primitives that make up the tree trunk.
Definition WeberPennTree.cpp:663
+
WeberPennTree::setTrunkSegmentResolution
void setTrunkSegmentResolution(const uint trunk_segs)
Set the radial triangle subdivisions for trunks.
Definition WeberPennTree.cpp:711
+
WeberPennTree::optionalOutputPrimitiveData
void optionalOutputPrimitiveData(const char *label)
Add optional output primitive data values to the Context.
Definition WeberPennTree.cpp:1467
+
WeberPennTree::getLeafUUIDs
std::vector< uint > getLeafUUIDs(const uint TreeID)
Get the unique universal identifiers (UUIDs) for the primitives that make up the tree leaves.
Definition WeberPennTree.cpp:683
+
helios::CompoundObject::rotate
void rotate(float rotation_radians, const char *rotation_axis_xyz_string)
Method to rotate a Compound Object about the x-, y-, or z-axis.
Definition Context.cpp:2357
+
helios::CompoundObject::translate
void translate(const helios::vec3 &shift)
Method to translate/shift a Compound Object.
Definition Context.cpp:2333
+
helios::CompoundObject::getPrimitiveUUIDs
std::vector< uint > getPrimitiveUUIDs() const
Get the UUIDs for all primitives contained in the object.
Definition Context.cpp:2236
helios::Context
Stores the state associated with simulation.
Definition Context.h:1882
-
helios::Context::copyObject
uint copyObject(uint ObjID)
Make a copy of a Compound Objects from the context.
Definition Context.cpp:2627
-
helios::Context::getObjectPointer
CompoundObject * getObjectPointer(uint ObjID) const
Get a pointer to a Compound Object.
Definition Context.cpp:2559
-
helios::Context::randu
float randu()
Draw a random number from a uniform distribution between 0 and 1.
Definition Context.cpp:1173
-
helios::Context::deleteObject
void deleteObject(uint ObjID)
Delete a single Compound Object from the context.
Definition Context.cpp:2594
+
helios::Context::copyObject
uint copyObject(uint ObjID)
Make a copy of a Compound Objects from the context.
Definition Context.cpp:2622
+
helios::Context::getObjectPointer
CompoundObject * getObjectPointer(uint ObjID) const
Get a pointer to a Compound Object.
Definition Context.cpp:2554
+
helios::Context::randu
float randu()
Draw a random number from a uniform distribution between 0 and 1.
Definition Context.cpp:1168
+
helios::Context::deleteObject
void deleteObject(uint ObjID)
Delete a single Compound Object from the context.
Definition Context.cpp:2589
helios::Context::setPrimitiveData
void setPrimitiveData(const uint &UUID, const char *label, const int &data)
Add data value (int) associated with a primitive element.
Definition Context_data.cpp:655
-
helios::Context::getTileObjectPointer
Tile * getTileObjectPointer(uint ObjID) const
Get a pointer to a Tile Compound Object.
Definition Context.cpp:3297
-
helios::Tile::getNormal
vec3 getNormal() const
Get a unit vector normal to the tile object surface.
Definition Context.cpp:3370
+
helios::Context::getTileObjectPointer
Tile * getTileObjectPointer(uint ObjID) const
Get a pointer to a Tile Compound Object.
Definition Context.cpp:3292
+
helios::Tile::getNormal
vec3 getNormal() const
Get a unit vector normal to the tile object surface.
Definition Context.cpp:3365
helios::rotatePointAboutLine
vec3 rotatePointAboutLine(const vec3 &point, const vec3 &line_base, const vec3 &line_direction, float theta)
Rotate a 3D vector about an arbitrary line.
Definition global.cpp:140
-
helios::Context::addTube
std::vector< uint > addTube(uint Ndivs, const std::vector< vec3 > &nodes, const std::vector< float > &radius)
Add a 3D tube compound object to the Context.
Definition Context.cpp:5807
-
helios::Context::addTileObject
uint addTileObject(const vec3 &center, const vec2 &size, const SphericalCoord &rotation, const int2 &subdiv)
Add a patch that is subdivided into a regular grid of sub-patches (tiled)
Definition Context.cpp:4460
+
helios::Context::addTube
std::vector< uint > addTube(uint Ndivs, const std::vector< vec3 > &nodes, const std::vector< float > &radius)
Add a 3D tube compound object to the Context.
Definition Context.cpp:5874
+
helios::Context::addTileObject
uint addTileObject(const vec3 &center, const vec2 &size, const SphericalCoord &rotation, const int2 &subdiv)
Add a patch that is subdivided into a regular grid of sub-patches (tiled)
Definition Context.cpp:4512
helios::rotatePoint
vec3 rotatePoint(const vec3 &position, const SphericalCoord &rotation)
Function to rotate a 3D vector given spherical angles elevation and azimuth.
Definition global.cpp:79
helios::cart2sphere
SphericalCoord cart2sphere(const vec3 &Cartesian)
Convert Cartesian coordinates to spherical coordinates.
Definition global.cpp:610
helios::string2RGBcolor
RGBAcolor string2RGBcolor(const char *str)
Convert a space-delimited string into an RGBcolor vector.
Definition global.cpp:743
helios::sphere2cart
vec3 sphere2cart(const SphericalCoord &Spherical)
Convert Spherical coordinates to Cartesian coordinates.
Definition global.cpp:617
helios::deblank
std::string deblank(const char *input)
Remove all whitespace from character array.
Definition global.cpp:912
helios::make_int2
int2 make_int2(int x, int y)
Make an int2 vector from two ints.
Definition helios_vector_types.h:99
-
helios::make_vec2
vec2 make_vec2(float x, float y)
Make a vec2 from two floats.
Definition helios_vector_types.h:432
-
helios::make_RGBcolor
RGBcolor make_RGBcolor(float r, float g, float b)
Make an RGBcolor vector.
Definition helios_vector_types.h:951
-
helios::make_vec3
vec3 make_vec3(float x, float y, float z)
Make a vec3 from three floats.
Definition helios_vector_types.h:587
-
helios::cross
vec3 cross(const vec3 &a, const vec3 &b)
Cross product of two vec3 vectors.
Definition helios_vector_types.h:597
-
helios::make_SphericalCoord
SphericalCoord make_SphericalCoord(float elevation_radians, float azimuth_radians)
Make a SphericalCoord by specifying elevation and azimuth.
Definition helios_vector_types.h:1536
+
helios::make_vec2
vec2 make_vec2(float x, float y)
Make a vec2 from two floats.
Definition helios_vector_types.h:433
+
helios::make_RGBcolor
RGBcolor make_RGBcolor(float r, float g, float b)
Make an RGBcolor vector.
Definition helios_vector_types.h:954
+
helios::make_vec3
vec3 make_vec3(float x, float y, float z)
Make a vec3 from three floats.
Definition helios_vector_types.h:589
+
helios::cross
vec3 cross(const vec3 &a, const vec3 &b)
Cross product of two vec3 vectors.
Definition helios_vector_types.h:599
+
helios::make_SphericalCoord
SphericalCoord make_SphericalCoord(float elevation_radians, float azimuth_radians)
Make a SphericalCoord by specifying elevation and azimuth.
Definition helios_vector_types.h:1539
-
helios::RGBAcolor
R-G-B-A color vector.
Definition helios_vector_types.h:1021
-
helios::RGBAcolor::r
float r
Red color component.
Definition helios_vector_types.h:1026
-
helios::RGBAcolor::b
float b
Blue color component.
Definition helios_vector_types.h:1032
-
helios::RGBAcolor::g
float g
Green color component.
Definition helios_vector_types.h:1029
-
helios::SphericalCoord
Vector of spherical coordinates (elevation,azimuth)
Definition helios_vector_types.h:1468
- -
helios::SphericalCoord::zenith
const float & zenith
Zenithal angle (radians)
Definition helios_vector_types.h:1487
-
helios::SphericalCoord::elevation
const float & elevation
Elevation angle (radians)
Definition helios_vector_types.h:1482
-
helios::SphericalCoord::azimuth
float azimuth
Azimuthal angle (radians)
Definition helios_vector_types.h:1489
+
helios::RGBAcolor
R-G-B-A color vector.
Definition helios_vector_types.h:1024
+
helios::RGBAcolor::r
float r
Red color component.
Definition helios_vector_types.h:1029
+
helios::RGBAcolor::b
float b
Blue color component.
Definition helios_vector_types.h:1035
+
helios::RGBAcolor::g
float g
Green color component.
Definition helios_vector_types.h:1032
+
helios::SphericalCoord
Vector of spherical coordinates (elevation,azimuth)
Definition helios_vector_types.h:1471
+ +
helios::SphericalCoord::zenith
const float & zenith
Zenithal angle (radians)
Definition helios_vector_types.h:1490
+
helios::SphericalCoord::elevation
const float & elevation
Elevation angle (radians)
Definition helios_vector_types.h:1485
+
helios::SphericalCoord::azimuth
float azimuth
Azimuthal angle (radians)
Definition helios_vector_types.h:1492
helios::int2
Vector of two elements of type 'int'.
Definition helios_vector_types.h:44
helios::int2::y
int y
Second element in vector.
Definition helios_vector_types.h:50
helios::int2::x
int x
First element in vector.
Definition helios_vector_types.h:48
-
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:502
-
helios::vec3::z
float z
Third element in vector.
Definition helios_vector_types.h:510
-
helios::vec3::normalize
void normalize()
Normalize vector components such that the magnitude is unity.
Definition helios_vector_types.h:513
+
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:503
+
helios::vec3::normalize
vec3 normalize()
Normalize vector components such that the magnitude is unity.
Definition helios_vector_types.h:514
+
helios::vec3::z
float z
Third element in vector.
Definition helios_vector_types.h:511
diff --git a/doc/html/_weber_penn_tree_8h.html b/doc/html/_weber_penn_tree_8h.html index e0f0f746b..3d0e9684e 100644 --- a/doc/html/_weber_penn_tree_8h.html +++ b/doc/html/_weber_penn_tree_8h.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
diff --git a/doc/html/_weber_penn_tree_8h_source.html b/doc/html/_weber_penn_tree_8h_source.html index af4da37c7..d779615fb 100644 --- a/doc/html/_weber_penn_tree_8h_source.html +++ b/doc/html/_weber_penn_tree_8h_source.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
@@ -118,13 +118,13 @@
25 int Shape;
26
27 // Fractional branchless area at tree base
-
28 float BaseSize;
+
28 float BaseSize, BaseSizeV;
29
30 // Number of splits at tree base
-
31 uint BaseSplits;
+
31 uint BaseSplits, BaseSplitsV;
32
33 // Fractional height of split (if BaseSplits>0)
-
34 float BaseSplitSize;
+
34 float BaseSplitSize, BaseSplitSizeV;
35
36 // Size and scaling of tree
37 float Scale, ScaleV, ZScale, ZScaleV;
@@ -253,50 +253,50 @@
203 std::map<std::string,WeberPennTreeParameters> trees_library;
204
206
-
216 void recursiveBranch( WeberPennTreeParameters parameters, uint n, uint seg_start, helios::vec3 base_position, helios::vec3 parent_normal, helios::SphericalCoord child_rotation, float length_parent, float radius_parent, float offset_child, helios::vec3 origin, float scale, const uint leaf_template );
-
217
-
218 float getVariation( float V );
+
218 void recursiveBranch( WeberPennTreeParameters parameters, uint n, uint seg_start, helios::vec3 base_position, helios::vec3 parent_normal, helios::SphericalCoord child_rotation, float length_parent, float radius_parent, float offset_child, helios::vec3 origin, float scale, const uint leaf_template, float base_size, uint base_splits );
219
-
220 std::minstd_rand0 generator;
+
220 float getVariation( float V );
221
-
222 float ShapeRatio( uint shape, float ratio );
+
222 std::minstd_rand0 generator;
223
-
224 uint branchLevels;
+
224 float ShapeRatio( uint shape, float ratio );
225
-
226 uint trunk_segs;
+
226 uint branchLevels;
227
-
228 uint branch_segs;
+
228 uint trunk_segs;
229
-
230 helios::int2 leaf_segs;
+
230 uint branch_segs;
231
-
233 std::vector<std::string> output_prim_data;
-
234
-
235};
+
232 helios::int2 leaf_segs;
+
233
+
235 std::vector<std::string> output_prim_data;
+
236
+
237};
-
WeberPennTree::setLeafSubdivisions
void setLeafSubdivisions(const helios::int2 leaf_segs)
Set the number of sub-patch divisions for leaves.
Definition WeberPennTree.cpp:715
-
WeberPennTree::getAllUUIDs
std::vector< uint > getAllUUIDs(const uint TreeID)
Get the unique universal identifiers (UUIDs) for all primitives that make up the tree.
Definition WeberPennTree.cpp:681
-
WeberPennTree::loadXML
void loadXML(const char *filename)
Load tree library from an XML file.
Definition WeberPennTree.cpp:749
-
WeberPennTree::setTreeParameters
void setTreeParameters(const char *treename, const WeberPennTreeParameters parameters)
Set the architectural parameters for a tree in the currently loaded library.
Definition WeberPennTree.cpp:734
+
WeberPennTree::setLeafSubdivisions
void setLeafSubdivisions(const helios::int2 leaf_segs)
Set the number of sub-patch divisions for leaves.
Definition WeberPennTree.cpp:727
+
WeberPennTree::getAllUUIDs
std::vector< uint > getAllUUIDs(const uint TreeID)
Get the unique universal identifiers (UUIDs) for all primitives that make up the tree.
Definition WeberPennTree.cpp:693
+
WeberPennTree::loadXML
void loadXML(const char *filename)
Load tree library from an XML file.
Definition WeberPennTree.cpp:761
+
WeberPennTree::setTreeParameters
void setTreeParameters(const char *treename, const WeberPennTreeParameters parameters)
Set the architectural parameters for a tree in the currently loaded library.
Definition WeberPennTree.cpp:746
WeberPennTree::buildTree
uint buildTree(const char *treename, helios::vec3 origin)
Construct a Weber-Penn tree using a tree already in the library.
Definition WeberPennTree.cpp:81
WeberPennTree::WeberPennTree
WeberPennTree(helios::Context *context)
Weber-Penn Tree constructor.
Definition WeberPennTree.cpp:24
-
WeberPennTree::setBranchRecursionLevel
void setBranchRecursionLevel(const uint level)
Only create branch primitives up to a certain recursion level (leaves are still created for all level...
Definition WeberPennTree.cpp:695
-
WeberPennTree::getBranchUUIDs
std::vector< uint > getBranchUUIDs(const uint TreeID)
Get the unique universal identifiers (UUIDs) for the primitives that make up the tree branches.
Definition WeberPennTree.cpp:661
-
WeberPennTree::seedRandomGenerator
void seedRandomGenerator(const uint seed)
Seed the random number generator. This can be useful for generating repeatable trees,...
Definition WeberPennTree.cpp:745
-
WeberPennTree::setBranchSegmentResolution
void setBranchSegmentResolution(const uint branch_segs)
Set the radial triangle subdivisions for branches.
Definition WeberPennTree.cpp:707
+
WeberPennTree::setBranchRecursionLevel
void setBranchRecursionLevel(const uint level)
Only create branch primitives up to a certain recursion level (leaves are still created for all level...
Definition WeberPennTree.cpp:707
+
WeberPennTree::getBranchUUIDs
std::vector< uint > getBranchUUIDs(const uint TreeID)
Get the unique universal identifiers (UUIDs) for the primitives that make up the tree branches.
Definition WeberPennTree.cpp:673
+
WeberPennTree::seedRandomGenerator
void seedRandomGenerator(const uint seed)
Seed the random number generator. This can be useful for generating repeatable trees,...
Definition WeberPennTree.cpp:757
+
WeberPennTree::setBranchSegmentResolution
void setBranchSegmentResolution(const uint branch_segs)
Set the radial triangle subdivisions for branches.
Definition WeberPennTree.cpp:719
WeberPennTree::selfTest
int selfTest(void)
Unit testing routine.
Definition WeberPennTree.cpp:44
-
WeberPennTree::getTreeParameters
WeberPennTreeParameters getTreeParameters(const char *treename)
Get the architectural parameters for a tree in the currently loaded library.
Definition WeberPennTree.cpp:723
-
WeberPennTree::getTrunkUUIDs
std::vector< uint > getTrunkUUIDs(const uint TreeID)
Get the unique universal identifiers (UUIDs) for the primitives that make up the tree trunk.
Definition WeberPennTree.cpp:651
-
WeberPennTree::setTrunkSegmentResolution
void setTrunkSegmentResolution(const uint trunk_segs)
Set the radial triangle subdivisions for trunks.
Definition WeberPennTree.cpp:699
-
WeberPennTree::optionalOutputPrimitiveData
void optionalOutputPrimitiveData(const char *label)
Add optional output primitive data values to the Context.
Definition WeberPennTree.cpp:1407
-
WeberPennTree::getLeafUUIDs
std::vector< uint > getLeafUUIDs(const uint TreeID)
Get the unique universal identifiers (UUIDs) for the primitives that make up the tree leaves.
Definition WeberPennTree.cpp:671
+
WeberPennTree::getTreeParameters
WeberPennTreeParameters getTreeParameters(const char *treename)
Get the architectural parameters for a tree in the currently loaded library.
Definition WeberPennTree.cpp:735
+
WeberPennTree::getTrunkUUIDs
std::vector< uint > getTrunkUUIDs(const uint TreeID)
Get the unique universal identifiers (UUIDs) for the primitives that make up the tree trunk.
Definition WeberPennTree.cpp:663
+
WeberPennTree::setTrunkSegmentResolution
void setTrunkSegmentResolution(const uint trunk_segs)
Set the radial triangle subdivisions for trunks.
Definition WeberPennTree.cpp:711
+
WeberPennTree::optionalOutputPrimitiveData
void optionalOutputPrimitiveData(const char *label)
Add optional output primitive data values to the Context.
Definition WeberPennTree.cpp:1467
+
WeberPennTree::getLeafUUIDs
std::vector< uint > getLeafUUIDs(const uint TreeID)
Get the unique universal identifiers (UUIDs) for the primitives that make up the tree leaves.
Definition WeberPennTree.cpp:683
helios::Context
Stores the state associated with simulation.
Definition Context.h:1882
-
helios::RGBcolor
R-G-B color vector.
Definition helios_vector_types.h:841
-
helios::SphericalCoord
Vector of spherical coordinates (elevation,azimuth)
Definition helios_vector_types.h:1468
+
helios::RGBcolor
R-G-B color vector.
Definition helios_vector_types.h:844
+
helios::SphericalCoord
Vector of spherical coordinates (elevation,azimuth)
Definition helios_vector_types.h:1471
helios::int2
Vector of two elements of type 'int'.
Definition helios_vector_types.h:44
-
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:502
+
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:503
diff --git a/doc/html/aeriallidar_2include_2random_8h_source.html b/doc/html/aeriallidar_2include_2random_8h_source.html index 80a01536f..8eb4b1b22 100644 --- a/doc/html/aeriallidar_2include_2random_8h_source.html +++ b/doc/html/aeriallidar_2include_2random_8h_source.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
diff --git a/doc/html/aeriallidar_2src_2file_i_o_8cpp.html b/doc/html/aeriallidar_2src_2file_i_o_8cpp.html index a9a681664..10dce3d30 100644 --- a/doc/html/aeriallidar_2src_2file_i_o_8cpp.html +++ b/doc/html/aeriallidar_2src_2file_i_o_8cpp.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
diff --git a/doc/html/aeriallidar_2src_2file_i_o_8cpp_source.html b/doc/html/aeriallidar_2src_2file_i_o_8cpp_source.html index 1776661e2..4a914cdd1 100644 --- a/doc/html/aeriallidar_2src_2file_i_o_8cpp_source.html +++ b/doc/html/aeriallidar_2src_2file_i_o_8cpp_source.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
@@ -490,23 +490,23 @@
helios::deg2rad
float deg2rad(float deg)
Convert degrees to radians.
Definition global.cpp:576
helios::string2vec3
vec3 string2vec3(const char *str)
Convert a space-delimited string into a vec3 vector.
Definition global.cpp:643
helios::deblank
std::string deblank(const char *input)
Remove all whitespace from character array.
Definition global.cpp:912
-
helios::make_vec2
vec2 make_vec2(float x, float y)
Make a vec2 from two floats.
Definition helios_vector_types.h:432
-
helios::make_RGBcolor
RGBcolor make_RGBcolor(float r, float g, float b)
Make an RGBcolor vector.
Definition helios_vector_types.h:951
+
helios::make_vec2
vec2 make_vec2(float x, float y)
Make a vec2 from two floats.
Definition helios_vector_types.h:433
+
helios::make_RGBcolor
RGBcolor make_RGBcolor(float r, float g, float b)
Make an RGBcolor vector.
Definition helios_vector_types.h:954
helios::make_int3
int3 make_int3(int X, int Y, int Z)
Make an int3 vector from three ints.
Definition helios_vector_types.h:198
-
helios::make_vec3
vec3 make_vec3(float x, float y, float z)
Make a vec3 from three floats.
Definition helios_vector_types.h:587
+
helios::make_vec3
vec3 make_vec3(float x, float y, float z)
Make a vec3 from three floats.
Definition helios_vector_types.h:589
AerialScanMetadata
Structure containing metadata for an aerial scan.
Definition AerialLiDAR.h:26
-
helios::RGBcolor
R-G-B color vector.
Definition helios_vector_types.h:841
-
helios::RGBcolor::b
float b
Blue color component.
Definition helios_vector_types.h:852
-
helios::RGBcolor::r
float r
Red color component.
Definition helios_vector_types.h:846
-
helios::RGBcolor::g
float g
Green color component.
Definition helios_vector_types.h:849
-
helios::SphericalCoord
Vector of spherical coordinates (elevation,azimuth)
Definition helios_vector_types.h:1468
+
helios::RGBcolor
R-G-B color vector.
Definition helios_vector_types.h:844
+
helios::RGBcolor::b
float b
Blue color component.
Definition helios_vector_types.h:855
+
helios::RGBcolor::r
float r
Red color component.
Definition helios_vector_types.h:849
+
helios::RGBcolor::g
float g
Green color component.
Definition helios_vector_types.h:852
+
helios::SphericalCoord
Vector of spherical coordinates (elevation,azimuth)
Definition helios_vector_types.h:1471
helios::vec2
Vector of two elements of type 'float'.
Definition helios_vector_types.h:346
helios::vec2::x
float x
First element in vector.
Definition helios_vector_types.h:350
helios::vec2::y
float y
Second element in vector.
Definition helios_vector_types.h:352
-
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:502
-
helios::vec3::x
float x
First element in vector.
Definition helios_vector_types.h:506
-
helios::vec3::z
float z
Third element in vector.
Definition helios_vector_types.h:510
-
helios::vec3::y
float y
Second element in vector.
Definition helios_vector_types.h:508
+
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:503
+
helios::vec3::x
float x
First element in vector.
Definition helios_vector_types.h:507
+
helios::vec3::z
float z
Third element in vector.
Definition helios_vector_types.h:511
+
helios::vec3::y
float y
Second element in vector.
Definition helios_vector_types.h:509
diff --git a/doc/html/annotated.html b/doc/html/annotated.html index a52e1066a..755e9e567 100644 --- a/doc/html/annotated.html +++ b/doc/html/annotated.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
@@ -131,73 +131,75 @@  CAerialLiDARcloudPrimary class for aerial LiDAR scan  CAerialScanMetadataStructure containing metadata for an aerial scan  CAxisRotation - CBBcoefficientsCoefficients for simplified Bailey stomatal conductance model - CBBLcoefficientsCoefficients for Ball, Berry, Leuning (Leuning 1990, 1995) stomatal conductance model - CBeanParametersParameters defining the bean plant canopy - CBLConductanceModelBoundary-layer conductance model class - CBMFcoefficientsCoefficients for simplified Buckley, Mott, & Farquhar stomatal conductance model - CBWBcoefficientsCoefficients for original Ball, Woodrow, Berry (1987) stomatal conductance model - ▼CCameraCalibrationCamera calibration structure used for camera calibration tasks - CGradientDescentParametersParameter struct for gradient descent - CCameraPropertiesProperties defining a radiation camera - CCanopyGenerator - CColormapRGB color map - CConicalCrownsCanopyParametersParameters defining the canopy with conical crowns - CDummyModelDummy model class - CDupex - CEmpiricalModelCoefficients - CEnergyBalanceModelEnergy balance model class - CFarquharModelCoefficients - CFloralBud - CGlyphGlyph object - 2D matrix shape - CGobletGrapevineParametersParameters defining the grapevine canopy with goblet (vent a taille) trellis - CGridCell - CHitPoint - CHitTable - CHomogeneousCanopyParametersParameters defining the homogeneous canopy - Cjpg_error_mgr - CLeafOptics - CLeafOpticsPropertiesLeafOptics model class - CLiDARcloudPrimary class for terrestrial LiDAR scan - CMOPTcoefficientsCoefficients for optimality-based Medlyn et al. (2011) stomatal conductance model - Cmy_error_mgr - CPerRayData - CPhotosynthesisModel - CPhotosyntheticTemperatureResponseParameters - CPhytomer - CPhytomerParameters - CPlantArchitecture - CPlantInstance - CRadiationBandProperties defining a radiation band - CRadiationCameraData object for a radiation camera - CRadiationModelRadiation transport model plugin - CRadiationSourceRadiation source data object - CRandomParameter_float - CRandomParameter_int - CScanMetadataStructure containing metadata for a terrestrial scan - CShaderOpenGL Shader data structure - CShoot - CShootParameters - CShx - CSolarPosition - CSorghumCanopyParametersParameters defining Sorghum plant canopy - CSphericalCrownsCanopyParametersParameters defining the canopy with spherical crowns - CSplitGrapevineParametersParameters defining the grapevine canopy with a split (quad) trellis - CStomatalConductanceModel - CStrawberryParametersParameters defining the strawberry plant canopy - CSyntheticAnnotation - CTomatoParametersParameters defining the tomato plant canopy - CTriad - CTriangulation - CUnilateralGrapevineParametersParameters defining the grapevine canopy with unilateral trellis - CVegetativeBud - CVisualizerClass for visualization of simulation results - CVoxelIntersection - CVSPGrapevineParametersParameters defining the grapevine canopy with vertical shoot positioned (VSP) trellis - CWalnutCanopyParametersParameters defining the walnut tree canopy - CWeberPennTree - CWeberPennTreeParameters - CWhiteSpruceCanopyParametersParameters defining the white spruce + CBaseCanopyParametersBase struct class for Canopy parameters + CBaseGrapeVineParameters + CBBcoefficientsCoefficients for simplified Bailey stomatal conductance model + CBBLcoefficientsCoefficients for Ball, Berry, Leuning (Leuning 1990, 1995) stomatal conductance model + CBeanParametersParameters defining the bean plant canopy + CBLConductanceModelBoundary-layer conductance model class + CBMFcoefficientsCoefficients for simplified Buckley, Mott, & Farquhar stomatal conductance model + CBWBcoefficientsCoefficients for original Ball, Woodrow, Berry (1987) stomatal conductance model + ▼CCameraCalibrationCamera calibration structure used for camera calibration tasks + CGradientDescentParametersParameter struct for gradient descent + CCameraPropertiesProperties defining a radiation camera + CCanopyGenerator + CColormapRGB color map + CConicalCrownsCanopyParametersParameters defining the canopy with conical crowns + CDummyModelDummy model class + CDupex + CEmpiricalModelCoefficients + CEnergyBalanceModelEnergy balance model class + CFarquharModelCoefficients + CFloralBud + CGlyphGlyph object - 2D matrix shape + CGobletGrapevineParametersParameters defining the grapevine canopy with goblet (vent a taille) trellis + CGridCell + CHitPoint + CHitTable + CHomogeneousCanopyParametersParameters defining the homogeneous canopy + Cjpg_error_mgr + CLeafOptics + CLeafOpticsPropertiesLeafOptics model class + CLiDARcloudPrimary class for terrestrial LiDAR scan + CMOPTcoefficientsCoefficients for optimality-based Medlyn et al. (2011) stomatal conductance model + Cmy_error_mgr + CPerRayData + CPhotosynthesisModel + CPhotosyntheticTemperatureResponseParameters + CPhytomer + CPhytomerParameters + CPlantArchitecture + CPlantInstance + CRadiationBandProperties defining a radiation band + CRadiationCameraData object for a radiation camera + CRadiationModelRadiation transport model plugin + CRadiationSourceRadiation source data object + CRandomParameter_float + CRandomParameter_int + CScanMetadataStructure containing metadata for a terrestrial scan + CShaderOpenGL Shader data structure + CShoot + CShootParameters + CShx + CSolarPosition + CSorghumCanopyParametersParameters defining Sorghum plant canopy + CSphericalCrownsCanopyParametersParameters defining the canopy with spherical crowns + CSplitGrapevineParametersParameters defining the grapevine canopy with a split (quad) trellis + CStomatalConductanceModel + CStrawberryParametersParameters defining the strawberry plant canopy + CSyntheticAnnotation + CTomatoParametersParameters defining the tomato plant canopy + CTriad + CTriangulation + CUnilateralGrapevineParametersParameters defining the grapevine canopy with unilateral trellis + CVegetativeBud + CVisualizerClass for visualization of simulation results + CVoxelIntersection + CVSPGrapevineParametersParameters defining the grapevine canopy with vertical shoot positioned (VSP) trellis + CWalnutCanopyParametersParameters defining the walnut tree canopy + CWeberPennTree + CWeberPennTreeParameters + CWhiteSpruceCanopyParametersParameters defining the white spruce
diff --git a/doc/html/bean_8cpp_source.html b/doc/html/bean_8cpp_source.html index e9e1af5ac..cfc447eb5 100644 --- a/doc/html/bean_8cpp_source.html +++ b/doc/html/bean_8cpp_source.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
@@ -221,7 +221,7 @@
115 int node_count = std::ceil( 2.f*length*params.shoot_subdivisions )+1;
116
117 vec3 dir = base_direction;
-
118 dir.normalize();
+
118 dir.normalize();
119
120 SphericalCoord base_angle = cart2sphere(dir);
121
@@ -420,42 +420,42 @@
313}
-
interpolateTube
helios::vec3 interpolateTube(const std::vector< helios::vec3 > &P, float frac)
Interpolate the position of a point along a tube.
Definition CanopyGenerator.cpp:2985
-
getVariation
float getVariation(float V, std::minstd_rand0 &generator)
Draw a random number from a uniform distribution between -V and V.
Definition CanopyGenerator.cpp:2775
+
interpolateTube
helios::vec3 interpolateTube(const std::vector< helios::vec3 > &P, float frac)
Interpolate the position of a point along a tube.
Definition CanopyGenerator.cpp:3226
+
getVariation
float getVariation(float V, std::minstd_rand0 &generator)
Draw a random number from a uniform distribution between -V and V.
Definition CanopyGenerator.cpp:3003
CanopyGenerator::bean
uint bean(const BeanParameters &params, const helios::vec3 &origin)
Function to add an individual bean plant.
Definition bean.cpp:295
helios::Context
Stores the state associated with simulation.
Definition Context.h:1882
-
helios::Context::translatePrimitive
void translatePrimitive(uint UUID, const vec3 &shift)
Translate a primitive using its UUID.
Definition Context.cpp:1401
-
helios::Context::deletePrimitive
void deletePrimitive(uint UUID)
Delete a single primitive from the context.
Definition Context.cpp:1531
-
helios::Context::randu
float randu()
Draw a random number from a uniform distribution between 0 and 1.
Definition Context.cpp:1173
-
helios::Context::rotatePrimitive
void rotatePrimitive(uint UUID, float rot, const char *axis)
Rotate a primitive about the x, y, or z axis using its UUID.
Definition Context.cpp:1415
-
helios::Context::copyPrimitive
uint copyPrimitive(uint UUID)
Make a copy of a primitive from the context.
Definition Context.cpp:1573
-
helios::Context::scalePrimitive
void scalePrimitive(uint UUID, const helios::vec3 &S)
Scale a primitive using its UUID relative to the origin (0,0,0)
Definition Context.cpp:1486
-
helios::Context::addTube
std::vector< uint > addTube(uint Ndivs, const std::vector< vec3 > &nodes, const std::vector< float > &radius)
Add a 3D tube compound object to the Context.
Definition Context.cpp:5807
+
helios::Context::translatePrimitive
void translatePrimitive(uint UUID, const vec3 &shift)
Translate a primitive using its UUID.
Definition Context.cpp:1396
+
helios::Context::deletePrimitive
void deletePrimitive(uint UUID)
Delete a single primitive from the context.
Definition Context.cpp:1526
+
helios::Context::randu
float randu()
Draw a random number from a uniform distribution between 0 and 1.
Definition Context.cpp:1168
+
helios::Context::rotatePrimitive
void rotatePrimitive(uint UUID, float rot, const char *axis)
Rotate a primitive about the x, y, or z axis using its UUID.
Definition Context.cpp:1410
+
helios::Context::copyPrimitive
uint copyPrimitive(uint UUID)
Make a copy of a primitive from the context.
Definition Context.cpp:1568
+
helios::Context::scalePrimitive
void scalePrimitive(uint UUID, const helios::vec3 &S)
Scale a primitive using its UUID relative to the origin (0,0,0)
Definition Context.cpp:1481
+
helios::Context::addTube
std::vector< uint > addTube(uint Ndivs, const std::vector< vec3 > &nodes, const std::vector< float > &radius)
Add a 3D tube compound object to the Context.
Definition Context.cpp:5874
helios::cart2sphere
SphericalCoord cart2sphere(const vec3 &Cartesian)
Convert Cartesian coordinates to spherical coordinates.
Definition global.cpp:610
helios::sphere2cart
vec3 sphere2cart(const SphericalCoord &Spherical)
Convert Spherical coordinates to Cartesian coordinates.
Definition global.cpp:617
-
helios::Context::addTriangle
uint addTriangle(const helios::vec3 &vertex0, const helios::vec3 &vertex1, const helios::vec3 &vertex2)
Add new Triangle geometric primitive.
Definition Context.cpp:1323
-
helios::make_vec2
vec2 make_vec2(float x, float y)
Make a vec2 from two floats.
Definition helios_vector_types.h:432
-
helios::make_vec3
vec3 make_vec3(float x, float y, float z)
Make a vec3 from three floats.
Definition helios_vector_types.h:587
-
helios::make_SphericalCoord
SphericalCoord make_SphericalCoord(float elevation_radians, float azimuth_radians)
Make a SphericalCoord by specifying elevation and azimuth.
Definition helios_vector_types.h:1536
-
BeanParameters
Parameters defining the bean plant canopy.
Definition CanopyGenerator.h:927
-
BeanParameters::leaflet_length
float leaflet_length
Length of the leaflet from base to tip leaf.
Definition CanopyGenerator.h:954
-
BeanParameters::pod_length
float pod_length
Length of bean pods.
Definition CanopyGenerator.h:975
-
BeanParameters::leaf_length
float leaf_length
Maximum width of leaves.
Definition CanopyGenerator.h:933
-
BeanParameters::shoot_subdivisions
int shoot_subdivisions
Number of radial subdivisions for shoot tubes.
Definition CanopyGenerator.h:945
-
BeanParameters::leaf_subdivisions
helios::int2 leaf_subdivisions
Number of sub-division segments per leaf.
Definition CanopyGenerator.h:936
-
BeanParameters::stem_length
float stem_length
Length of stems before splitting to leaflets.
Definition CanopyGenerator.h:951
-
BeanParameters::stem_radius
float stem_radius
Radius of main stem at base.
Definition CanopyGenerator.h:948
-
BeanParameters::leaf_texture_file
std::string leaf_texture_file
Path to texture map file for leaves.
Definition CanopyGenerator.h:939
-
BeanParameters::shoot_color
helios::RGBcolor shoot_color
Color of shoots.
Definition CanopyGenerator.h:942
-
helios::SphericalCoord
Vector of spherical coordinates (elevation,azimuth)
Definition helios_vector_types.h:1468
-
helios::SphericalCoord::zenith
const float & zenith
Zenithal angle (radians)
Definition helios_vector_types.h:1487
-
helios::SphericalCoord::elevation
const float & elevation
Elevation angle (radians)
Definition helios_vector_types.h:1482
-
helios::SphericalCoord::azimuth
float azimuth
Azimuthal angle (radians)
Definition helios_vector_types.h:1489
+
helios::Context::addTriangle
uint addTriangle(const helios::vec3 &vertex0, const helios::vec3 &vertex1, const helios::vec3 &vertex2)
Add new Triangle geometric primitive.
Definition Context.cpp:1318
+
helios::make_vec2
vec2 make_vec2(float x, float y)
Make a vec2 from two floats.
Definition helios_vector_types.h:433
+
helios::make_vec3
vec3 make_vec3(float x, float y, float z)
Make a vec3 from three floats.
Definition helios_vector_types.h:589
+
helios::make_SphericalCoord
SphericalCoord make_SphericalCoord(float elevation_radians, float azimuth_radians)
Make a SphericalCoord by specifying elevation and azimuth.
Definition helios_vector_types.h:1539
+
BeanParameters
Parameters defining the bean plant canopy.
Definition CanopyGenerator.h:983
+
BeanParameters::leaflet_length
float leaflet_length
Length of the leaflet from base to tip leaf.
Definition CanopyGenerator.h:1027
+
BeanParameters::pod_length
float pod_length
Length of bean pods.
Definition CanopyGenerator.h:1042
+
BeanParameters::leaf_length
float leaf_length
Maximum width of leaves.
Definition CanopyGenerator.h:1006
+
BeanParameters::shoot_subdivisions
int shoot_subdivisions
Number of radial subdivisions for shoot tubes.
Definition CanopyGenerator.h:1018
+
BeanParameters::leaf_subdivisions
helios::int2 leaf_subdivisions
Number of sub-division segments per leaf.
Definition CanopyGenerator.h:1009
+
BeanParameters::stem_length
float stem_length
Length of stems before splitting to leaflets.
Definition CanopyGenerator.h:1024
+
BeanParameters::stem_radius
float stem_radius
Radius of main stem at base.
Definition CanopyGenerator.h:1021
+
BeanParameters::leaf_texture_file
std::string leaf_texture_file
Path to texture map file for leaves.
Definition CanopyGenerator.h:1012
+
BeanParameters::shoot_color
helios::RGBcolor shoot_color
Color of shoots.
Definition CanopyGenerator.h:1015
+
helios::SphericalCoord
Vector of spherical coordinates (elevation,azimuth)
Definition helios_vector_types.h:1471
+
helios::SphericalCoord::zenith
const float & zenith
Zenithal angle (radians)
Definition helios_vector_types.h:1490
+
helios::SphericalCoord::elevation
const float & elevation
Elevation angle (radians)
Definition helios_vector_types.h:1485
+
helios::SphericalCoord::azimuth
float azimuth
Azimuthal angle (radians)
Definition helios_vector_types.h:1492
helios::int2::y
int y
Second element in vector.
Definition helios_vector_types.h:50
helios::int2::x
int x
First element in vector.
Definition helios_vector_types.h:48
helios::vec2
Vector of two elements of type 'float'.
Definition helios_vector_types.h:346
-
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:502
-
helios::vec3::normalize
void normalize()
Normalize vector components such that the magnitude is unity.
Definition helios_vector_types.h:513
+
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:503
+
helios::vec3::normalize
vec3 normalize()
Normalize vector components such that the magnitude is unity.
Definition helios_vector_types.h:514
diff --git a/doc/html/class_aerial_li_d_a_rcloud.html b/doc/html/class_aerial_li_d_a_rcloud.html index ac100db27..6df667f6a 100644 --- a/doc/html/class_aerial_li_d_a_rcloud.html +++ b/doc/html/class_aerial_li_d_a_rcloud.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
diff --git a/doc/html/class_b_l_conductance_model.html b/doc/html/class_b_l_conductance_model.html index 841f2d6db..f1d8463c1 100644 --- a/doc/html/class_b_l_conductance_model.html +++ b/doc/html/class_b_l_conductance_model.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
diff --git a/doc/html/class_canopy_generator.html b/doc/html/class_canopy_generator.html index 1ca630a50..27c1e6dd6 100644 --- a/doc/html/class_canopy_generator.html +++ b/doc/html/class_canopy_generator.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
@@ -111,9 +111,18 @@ int selfTest ()  Unit testing routine.
  -void loadXML (const char *filename) - Build canopy geometries based on parameters specified in an XML file.
-  +template<typename CanopyType , typename... Args> +void storeCanopyParameters (Args &&... args) + Stores the given canopy parameters.
+  +std::vector< std::shared_ptr< BaseCanopyParameters > > getCanopyParametersList () +  +void loadXML (const char *filename, bool build=true) + Reads the XML file of the given name and stores all the configured canopy parameters.
+  +void buildCanopies () + Builds canopies for all the stored canopy parameters.
+  void buildCanopy (const HomogeneousCanopyParameters &params)  Build a canopy consisting of a homogeneous volume of leaves.
  @@ -201,6 +210,12 @@ void enableMessages ()  Enable standard messages to be printed to screen (default is to enable messages)
  +void buildIndividualPlants (helios::vec3 position) + Builds individual plants based on the stored canopy parameters, at the given position.
+  +void buildIndividualPlants () + Builds individual plants based on the stored canopy parameters (using canopy_origin as the position)
+  std::vector< std::vector< uint > > addGrapeCluster (helios::vec3 position, float grape_rad, float cluster_rad, helios::RGBcolor grape_color, uint grape_subdiv)  Function to add an individual grape berry cluster.
  @@ -243,7 +258,7 @@

Detailed Description

-

Definition at line 985 of file CanopyGenerator.h.

+

Definition at line 1052 of file CanopyGenerator.h.

Constructor & Destructor Documentation

◆ CanopyGenerator()

@@ -276,7 +291,7 @@

Definition at line 622 of file CanopyGenerator.cpp.

+

Definition at line 1892 of file CanopyGenerator.cpp.

@@ -362,6 +377,27 @@

Definition at line 295 of file bean.cpp.

+

+
+ +

◆ buildCanopies()

+ +
+
+ + + + + + + +
void CanopyGenerator::buildCanopies ()
+
+ +

Builds canopies for all the stored canopy parameters.

+ +

Definition at line 2333 of file CanopyGenerator.cpp.

+
@@ -387,7 +423,7 @@

Definition at line 2734 of file CanopyGenerator.cpp.

+

Definition at line 2962 of file CanopyGenerator.cpp.

@@ -414,7 +450,7 @@

Definition at line 2325 of file CanopyGenerator.cpp.

+

Definition at line 2513 of file CanopyGenerator.cpp.

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Definition at line 2528 of file CanopyGenerator.cpp.

+

Definition at line 2746 of file CanopyGenerator.cpp.

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Definition at line 2151 of file CanopyGenerator.cpp.

+

Definition at line 2339 of file CanopyGenerator.cpp.

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Definition at line 2703 of file CanopyGenerator.cpp.

+

Definition at line 2931 of file CanopyGenerator.cpp.

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Definition at line 2224 of file CanopyGenerator.cpp.

+

Definition at line 2412 of file CanopyGenerator.cpp.

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Definition at line 2464 of file CanopyGenerator.cpp.

+

Definition at line 2662 of file CanopyGenerator.cpp.

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Definition at line 2641 of file CanopyGenerator.cpp.

+

Definition at line 2869 of file CanopyGenerator.cpp.

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Definition at line 2610 of file CanopyGenerator.cpp.

+

Definition at line 2838 of file CanopyGenerator.cpp.

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Definition at line 2496 of file CanopyGenerator.cpp.

+

Definition at line 2704 of file CanopyGenerator.cpp.

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Definition at line 2427 of file CanopyGenerator.cpp.

+

Definition at line 2615 of file CanopyGenerator.cpp.

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Definition at line 2672 of file CanopyGenerator.cpp.

+

Definition at line 2900 of file CanopyGenerator.cpp.

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Definition at line 2560 of file CanopyGenerator.cpp.

+

Definition at line 2788 of file CanopyGenerator.cpp.

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Definition at line 2113 of file CanopyGenerator.cpp.

+

Definition at line 2295 of file CanopyGenerator.cpp.

@@ -817,7 +853,50 @@

Definition at line 2117 of file CanopyGenerator.cpp.

+

Definition at line 2299 of file CanopyGenerator.cpp.

+ + + + +

◆ buildIndividualPlants() [1/2]

+ +
+
+ + + + + + + +
void CanopyGenerator::buildIndividualPlants ()
+
+ +

Builds individual plants based on the stored canopy parameters (using canopy_origin as the position)

+ +

Definition at line 3219 of file CanopyGenerator.cpp.

+ +
+
+ +

◆ buildIndividualPlants() [2/2]

+ +
+
+ + + + + + + +
void CanopyGenerator::buildIndividualPlants (helios::vec3 position)
+
+ +

Builds individual plants based on the stored canopy parameters, at the given position.

+
Note
If you have multiple canopy parameters stored, this will try to build an individual plant of each type at the same position
+ +

Definition at line 3213 of file CanopyGenerator.cpp.

@@ -838,7 +917,7 @@

Definition at line 3105 of file CanopyGenerator.cpp.

+

Definition at line 3346 of file CanopyGenerator.cpp.

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Definition at line 3109 of file CanopyGenerator.cpp.

+

Definition at line 3350 of file CanopyGenerator.cpp.

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Definition at line 2977 of file CanopyGenerator.cpp.

+

Definition at line 3205 of file CanopyGenerator.cpp.

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Definition at line 2981 of file CanopyGenerator.cpp.

+

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Definition at line 2943 of file CanopyGenerator.cpp.

+

Definition at line 3171 of file CanopyGenerator.cpp.

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Definition at line 2881 of file CanopyGenerator.cpp.

+

Definition at line 3109 of file CanopyGenerator.cpp.

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Definition at line 2870 of file CanopyGenerator.cpp.

+

Definition at line 3098 of file CanopyGenerator.cpp.

+ + + + +

◆ getCanopyParametersList()

+ +
+
+ + + + + + + +
std::vector< std::shared_ptr< BaseCanopyParameters > > CanopyGenerator::getCanopyParametersList ()
+
+ +

Definition at line 2059 of file CanopyGenerator.cpp.

@@ -997,7 +1095,7 @@

Definition at line 2914 of file CanopyGenerator.cpp.

+

Definition at line 3142 of file CanopyGenerator.cpp.

@@ -1025,7 +1123,7 @@

Note
First index is the cluster of fruit (if applicable), second index is the fruit, third index is the UUIDs making up the sub-primitives of the fruit.
-

Definition at line 2903 of file CanopyGenerator.cpp.

+

Definition at line 3131 of file CanopyGenerator.cpp.

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Definition at line 2927 of file CanopyGenerator.cpp.

+

Definition at line 3155 of file CanopyGenerator.cpp.

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Definition at line 2897 of file CanopyGenerator.cpp.

+

Definition at line 3125 of file CanopyGenerator.cpp.

@@ -1095,7 +1193,7 @@

Note
The first index is the leaf, second index is the UUIDs making up the sub-primitives of the leaf (if applicable).
-

Definition at line 2887 of file CanopyGenerator.cpp.

+

Definition at line 3115 of file CanopyGenerator.cpp.

@@ -1116,7 +1214,7 @@

Definition at line 2969 of file CanopyGenerator.cpp.

+

Definition at line 3197 of file CanopyGenerator.cpp.

@@ -1137,7 +1235,7 @@

Definition at line 2864 of file CanopyGenerator.cpp.

+

Definition at line 3092 of file CanopyGenerator.cpp.

@@ -1164,7 +1262,7 @@

Definition at line 2853 of file CanopyGenerator.cpp.

+

Definition at line 3081 of file CanopyGenerator.cpp.

@@ -1197,7 +1295,7 @@

Returns
Plant ID of bean plant.
-

Definition at line 959 of file grapevine.cpp.

+

Definition at line 1064 of file grapevine.cpp.

@@ -1230,7 +1328,7 @@

Returns
Plant ID of bean plant.
-

Definition at line 429 of file grapevine.cpp.

+

Definition at line 463 of file grapevine.cpp.

@@ -1263,7 +1361,7 @@

Returns
Plant ID of bean plant.
-

Definition at line 759 of file grapevine.cpp.

+

Definition at line 829 of file grapevine.cpp.

@@ -1300,8 +1398,8 @@

-

◆ loadXML()

+ +

◆ loadXML()

@@ -1309,21 +1407,26 @@

void CanopyGenerator::loadXML ( - const char * filename) + const char * filename, + + + + bool build = true )

-

Build canopy geometries based on parameters specified in an XML file.

+

Reads the XML file of the given name and stores all the configured canopy parameters.

Parameters
+
[in]filenamePath to XML file to be read
[in]buildtrue if we should build all the canopies for which we read parameters in the XML file
-

Definition at line 783 of file CanopyGenerator.cpp.

+

Definition at line 2067 of file CanopyGenerator.cpp.

@@ -1350,7 +1453,7 @@

Definition at line 2973 of file CanopyGenerator.cpp.

+

Definition at line 3201 of file CanopyGenerator.cpp.

@@ -1371,7 +1474,7 @@

Definition at line 636 of file CanopyGenerator.cpp.

+

Definition at line 1906 of file CanopyGenerator.cpp.

@@ -1406,6 +1509,29 @@

Definition at line 8 of file sorghum.cpp.

+ + + +

◆ storeCanopyParameters()

+ +
+
+
+template<typename CanopyType , typename... Args>
+ + + + + + + +
void CanopyGenerator::storeCanopyParameters (Args &&... args)
+
+ +

Stores the given canopy parameters.

+ +

Definition at line 2054 of file CanopyGenerator.cpp.

+
diff --git a/doc/html/class_dummy_model.html b/doc/html/class_dummy_model.html index 255225de5..755e20e23 100644 --- a/doc/html/class_dummy_model.html +++ b/doc/html/class_dummy_model.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
diff --git a/doc/html/class_energy_balance_model.html b/doc/html/class_energy_balance_model.html index e672d22d2..4c18c8ade 100644 --- a/doc/html/class_energy_balance_model.html +++ b/doc/html/class_energy_balance_model.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
@@ -137,6 +137,9 @@ void addRadiationBand (const char *band)  Add the label of a radiation band in the RadiationModel plug-in that should be used in calculation of the absorbed all-wave radiation flux.
  +void addRadiationBand (const std::vector< std::string > &bands) + Add the labels of radiation bands in the RadiationModel plug-in that should be used in calculation of the absorbed all-wave radiation flux.
+  void optionalOutputPrimitiveData (const char *label)  Add optional output primitive data values to the Context.
  @@ -182,7 +185,7 @@

Member Function Documentation

-

◆ addRadiationBand()

+

◆ addRadiationBand() [1/2]

@@ -206,6 +209,33 @@

Definition at line 341 of file EnergyBalanceModel.cpp.

+

+
+ +

◆ addRadiationBand() [2/2]

+ +
+
+ + + + + + + +
void EnergyBalanceModel::addRadiationBand (const std::vector< std::string > & bands)
+
+ +

Add the labels of radiation bands in the RadiationModel plug-in that should be used in calculation of the absorbed all-wave radiation flux.

+
Parameters
+ + +
[in]bandsVector of names of radiation bands (e.g., PAR, NIR, LW, etc.)
+
+
+ +

Definition at line 347 of file EnergyBalanceModel.cpp.

+
@@ -273,7 +303,7 @@

Definition at line 347 of file EnergyBalanceModel.cpp.

+

Definition at line 353 of file EnergyBalanceModel.cpp.

@@ -294,7 +324,7 @@

Definition at line 357 of file EnergyBalanceModel.cpp.

+

Definition at line 363 of file EnergyBalanceModel.cpp.

@@ -316,7 +346,7 @@

Definition at line 361 of file EnergyBalanceModel.cpp.

+

Definition at line 367 of file EnergyBalanceModel.cpp.

diff --git a/doc/html/class_glyph.html b/doc/html/class_glyph.html index bfa12575b..5a517f8e8 100644 --- a/doc/html/class_glyph.html +++ b/doc/html/class_glyph.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
diff --git a/doc/html/class_hit_table.html b/doc/html/class_hit_table.html index af1fdf068..ab229175f 100644 --- a/doc/html/class_hit_table.html +++ b/doc/html/class_hit_table.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
diff --git a/doc/html/class_leaf_optics.html b/doc/html/class_leaf_optics.html index 5cc36dce5..673572db9 100644 --- a/doc/html/class_leaf_optics.html +++ b/doc/html/class_leaf_optics.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
diff --git a/doc/html/class_li_d_a_rcloud.html b/doc/html/class_li_d_a_rcloud.html index 44a652013..8d9b33660 100644 --- a/doc/html/class_li_d_a_rcloud.html +++ b/doc/html/class_li_d_a_rcloud.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
diff --git a/doc/html/class_photosynthesis_model.html b/doc/html/class_photosynthesis_model.html index cc7c52589..ea47f054e 100644 --- a/doc/html/class_photosynthesis_model.html +++ b/doc/html/class_photosynthesis_model.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
diff --git a/doc/html/class_plant_architecture.html b/doc/html/class_plant_architecture.html index e86737e0d..1ae4f8380 100644 --- a/doc/html/class_plant_architecture.html +++ b/doc/html/class_plant_architecture.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
@@ -149,9 +149,9 @@ void deletePlantInstance (const std::vector< uint > &plantIDs)  Delete multiple existing plant instances.
  -void setPlantPhenologicalThresholds (uint plantID, float time_to_leaf_out, float time_to_flower_initiation, float time_to_flower_opening, float time_to_fruit_set, float time_to_fruit_maturity, float time_to_senescence) - Specify the threshold values for plant phenological stages.
-  +void setPlantPhenologicalThresholds (uint plantID, float time_to_dormancy_break, float time_to_flower_initiation, float time_to_flower_opening, float time_to_fruit_set, float time_to_fruit_maturity, float time_to_senescence, bool is_evergreen=false) + Specify the threshold values for plant phenological stages.
+  void disablePlantPhenology (uint plantID)   void advanceTime (float dt) @@ -197,10 +197,8 @@   void initializeShootCarbohydratePool (uint plantID, uint shootID, float carbohydrate_concentration_molC_m3)   -void incrementPhytomerInternodeGirth (uint plantID, uint shootID, uint node_number, float girth_change, bool update_context_geometry=true) -  -void updateShootInternodeLength (uint plantID, uint shootID, float dt, bool update_context_geometry=true) -  +void incrementPhytomerInternodeGirth (uint plantID, uint shootID, uint node_number, bool update_context_geometry) +  void setPhytomerLeafScale (uint plantID, uint shootID, uint node_number, float leaf_scale_factor_fraction)   void setPlantBasePosition (uint plantID, const helios::vec3 &base_position) @@ -225,6 +223,9 @@   helios::vec3 getPlantBasePosition (uint plantID) const   +float sumPlantLeafArea (uint plantID) const + Sum the one-sided leaf area of all leaves in the plant.
+  std::vector< uint > getAllPlantObjectIDs (uint plantID) const  Get object IDs for all organs objects for a given plant.
  @@ -275,7 +276,7 @@

Detailed Description

-

Definition at line 917 of file PlantArchitecture.h.

+

Definition at line 936 of file PlantArchitecture.h.

Constructor & Destructor Documentation

◆ PlantArchitecture()

@@ -384,7 +385,7 @@

Returns
ID of the new shoot to be used to reference it later.
-

Definition at line 1866 of file PlantArchitecture.cpp.

+

Definition at line 1899 of file PlantArchitecture.cpp.

@@ -477,7 +478,7 @@

Returns
ID of the newly generated shoot.
-

Definition at line 1943 of file PlantArchitecture.cpp.

+

Definition at line 1976 of file PlantArchitecture.cpp.

@@ -564,7 +565,7 @@

Returns
ID of the newly generated shoot.
-

Definition at line 1987 of file PlantArchitecture.cpp.

+

Definition at line 2020 of file PlantArchitecture.cpp.

@@ -597,7 +598,7 @@

Returns
ID of the plant instance.
-

Definition at line 2558 of file PlantArchitecture.cpp.

+

Definition at line 2568 of file PlantArchitecture.cpp.

@@ -624,7 +625,7 @@

Definition at line 2671 of file PlantArchitecture.cpp.

+

Definition at line 2682 of file PlantArchitecture.cpp.

@@ -656,7 +657,7 @@

Definition at line 2683 of file PlantArchitecture.cpp.

+

Definition at line 2694 of file PlantArchitecture.cpp.

@@ -719,7 +720,7 @@

Returns
ID of generated phytomer
-

Definition at line 2025 of file PlantArchitecture.cpp.

+

Definition at line 2058 of file PlantArchitecture.cpp.

@@ -800,7 +801,7 @@

Returns
ID of the new shoot to be used to reference it later.
-

Definition at line 1898 of file PlantArchitecture.cpp.

+

Definition at line 1931 of file PlantArchitecture.cpp.

@@ -819,7 +820,7 @@

-

Definition at line 2344 of file PlantArchitecture.cpp.

+

Definition at line 2354 of file PlantArchitecture.cpp.

@@ -864,7 +865,7 @@

Returns
Vector of plant instance IDs.
-

Definition at line 217 of file PlantArchitecture.cpp.

+

Definition at line 216 of file PlantArchitecture.cpp.

@@ -929,7 +930,7 @@

Definition at line 236 of file PlantArchitecture.cpp.

+

Definition at line 235 of file PlantArchitecture.cpp.

@@ -956,7 +957,7 @@

Definition at line 2639 of file PlantArchitecture.cpp.

+

Definition at line 2649 of file PlantArchitecture.cpp.

@@ -983,7 +984,7 @@

Definition at line 2627 of file PlantArchitecture.cpp.

+

Definition at line 2637 of file PlantArchitecture.cpp.

@@ -1004,7 +1005,7 @@

Definition at line 2093 of file PlantArchitecture.cpp.

+

Definition at line 2121 of file PlantArchitecture.cpp.

@@ -1025,7 +1026,7 @@

Definition at line 2101 of file PlantArchitecture.cpp.

+

Definition at line 2129 of file PlantArchitecture.cpp.

@@ -1046,7 +1047,7 @@

Definition at line 2097 of file PlantArchitecture.cpp.

+

Definition at line 2125 of file PlantArchitecture.cpp.

@@ -1065,7 +1066,7 @@

-

Definition at line 2662 of file PlantArchitecture.cpp.

+

Definition at line 2673 of file PlantArchitecture.cpp.

@@ -1109,7 +1110,7 @@

Returns
ID of the new plant instance.
-

Definition at line 2574 of file PlantArchitecture.cpp.

+

Definition at line 2584 of file PlantArchitecture.cpp.

@@ -1148,7 +1149,7 @@

Definition at line 2079 of file PlantArchitecture.cpp.

+

Definition at line 2107 of file PlantArchitecture.cpp.

@@ -1175,7 +1176,7 @@

Definition at line 2105 of file PlantArchitecture.cpp.

+

Definition at line 2133 of file PlantArchitecture.cpp.

@@ -1198,7 +1199,7 @@

-

Definition at line 395 of file InputOutput.cpp.

+

Definition at line 397 of file InputOutput.cpp.

@@ -1221,7 +1222,7 @@

-

Definition at line 401 of file InputOutput.cpp.

+

Definition at line 403 of file InputOutput.cpp.

@@ -1249,7 +1250,7 @@

Returns
Vector of object IDs for all organs in the plant.
-

Definition at line 2386 of file PlantArchitecture.cpp.

+

Definition at line 2396 of file PlantArchitecture.cpp.

@@ -1277,7 +1278,7 @@

Returns
Vector of primitive UUIDs for all primitives in the plant.
-

Definition at line 2416 of file PlantArchitecture.cpp.

+

Definition at line 2426 of file PlantArchitecture.cpp.

@@ -1299,7 +1300,7 @@

Returns
Map of shoot type labels to ShootParameters structures for all shoot types in the current plant model. The key is the user-defined label string for the shoot type, and the value is the corresponding ShootParameters structure.
-

Definition at line 85 of file PlantLibrary.cpp.

+

Definition at line 93 of file PlantLibrary.cpp.

@@ -1327,7 +1328,7 @@

Returns
ShootParameters structure for the specified shoot type.
-

Definition at line 76 of file PlantLibrary.cpp.

+

Definition at line 84 of file PlantLibrary.cpp.

@@ -1346,7 +1347,7 @@

-

Definition at line 2274 of file PlantArchitecture.cpp.

+

Definition at line 2284 of file PlantArchitecture.cpp.

@@ -1365,7 +1366,7 @@

-

Definition at line 2260 of file PlantArchitecture.cpp.

+

Definition at line 2254 of file PlantArchitecture.cpp.

@@ -1393,7 +1394,7 @@

Returns
Vector of object IDs for all inflorescences in the plant.
-

Definition at line 2504 of file PlantArchitecture.cpp.

+

Definition at line 2514 of file PlantArchitecture.cpp.

@@ -1421,7 +1422,7 @@

Returns
Vector of object IDs for all fruits in the plant.
-

Definition at line 2531 of file PlantArchitecture.cpp.

+

Definition at line 2541 of file PlantArchitecture.cpp.

@@ -1449,7 +1450,7 @@

Returns
Vector of object IDs for all internodes in the plant.
-

Definition at line 2420 of file PlantArchitecture.cpp.

+

Definition at line 2430 of file PlantArchitecture.cpp.

@@ -1477,7 +1478,7 @@

Returns
Vector of object IDs for all leaves in the plant.
-

Definition at line 2459 of file PlantArchitecture.cpp.

+

Definition at line 2469 of file PlantArchitecture.cpp.

@@ -1505,7 +1506,7 @@

Returns
Vector of object IDs for all peduncles in the plant.
-

Definition at line 2480 of file PlantArchitecture.cpp.

+

Definition at line 2490 of file PlantArchitecture.cpp.

@@ -1533,7 +1534,7 @@

Returns
Vector of object IDs for all petioles in the plant.
-

Definition at line 2438 of file PlantArchitecture.cpp.

+

Definition at line 2448 of file PlantArchitecture.cpp.

@@ -1552,7 +1553,7 @@

-

Definition at line 63 of file InputOutput.cpp.

+

Definition at line 65 of file InputOutput.cpp.

@@ -1575,7 +1576,7 @@

-

Definition at line 2355 of file PlantArchitecture.cpp.

+

Definition at line 2365 of file PlantArchitecture.cpp.

@@ -1598,7 +1599,7 @@

-

Definition at line 2364 of file PlantArchitecture.cpp.

+

Definition at line 2374 of file PlantArchitecture.cpp.

@@ -1617,12 +1618,12 @@

-

Definition at line 2283 of file PlantArchitecture.cpp.

+

Definition at line 2293 of file PlantArchitecture.cpp.

- -

◆ incrementPhytomerInternodeGirth()

+ +

◆ incrementPhytomerInternodeGirth()

@@ -1645,17 +1646,12 @@

- float girth_change, - - - - - bool update_context_geometry = true ) + bool update_context_geometry )

-

Definition at line 2109 of file PlantArchitecture.cpp.

+

Definition at line 2181 of file PlantArchitecture.cpp.

@@ -1752,7 +1748,7 @@

-

Definition at line 2334 of file PlantArchitecture.cpp.

+

Definition at line 2344 of file PlantArchitecture.cpp.

@@ -1779,7 +1775,7 @@

Definition at line 3088 of file PlantArchitecture.cpp.

+

Definition at line 3108 of file PlantArchitecture.cpp.

@@ -1806,7 +1802,7 @@

Definition at line 3096 of file PlantArchitecture.cpp.

+

Definition at line 3116 of file PlantArchitecture.cpp.

@@ -1829,7 +1825,7 @@

-

Definition at line 512 of file InputOutput.cpp.

+

Definition at line 514 of file InputOutput.cpp.

@@ -1848,7 +1844,7 @@

-

Definition at line 2322 of file PlantArchitecture.cpp.

+

Definition at line 2332 of file PlantArchitecture.cpp.

@@ -1871,7 +1867,7 @@

-

Definition at line 2305 of file PlantArchitecture.cpp.

+

Definition at line 2315 of file PlantArchitecture.cpp.

@@ -1933,7 +1929,7 @@

-

Definition at line 2223 of file PlantArchitecture.cpp.

+

Definition at line 2217 of file PlantArchitecture.cpp.

@@ -1956,7 +1952,7 @@

-

Definition at line 2269 of file PlantArchitecture.cpp.

+

Definition at line 2279 of file PlantArchitecture.cpp.

@@ -1979,12 +1975,12 @@

-

Definition at line 2245 of file PlantArchitecture.cpp.

+

Definition at line 2239 of file PlantArchitecture.cpp.

- -

◆ setPlantPhenologicalThresholds()

+ +

◆ setPlantPhenologicalThresholds()

@@ -1997,7 +1993,7 @@

- float time_to_leaf_out, + float time_to_dormancy_break, @@ -2022,7 +2018,12 @@

- float time_to_senescence ) + float time_to_senescence, + + + + + bool is_evergreen = false )

@@ -2031,52 +2032,52 @@

Parameters
- + +
[in]plantIDID of the plant.
[in]time_to_leaf_outTime from dormancy required for leaf out.
[in]time_to_dormancy_breakTime from last scenescence required for breaking dormancy.
[in]time_to_flower_initiationTime from emergence/dormancy required to reach flower creation (closed flowers).
[in]time_to_flower_openingTime from flower initiation to flower opening.
[in]time_to_fruit_setTime from flower opening required to reach fruit set (i.e., flower dies and fruit is created).
[in]time_to_fruit_maturityTime from fruit set date required to reach fruit maturity.
[in]time_to_senescenceTime from emergence/dormancy required to reach senescence.
[in]is_evergreen[OPTIONAL] True if the plant is evergreen (i.e., does not lose all leaves during senescence).
Note
Any phenological stage can be skipped by specifying a negative threshold value. In this case, the stage will be skipped and the threshold for the next stage will be relative to the previous stage.
-

Definition at line 2647 of file PlantArchitecture.cpp.

+

Definition at line 2657 of file PlantArchitecture.cpp.

- -

◆ updateCurrentShootParameters() [1/2]

+ +

◆ sumPlantLeafArea()

- + - - + +
void PlantArchitecture::updateCurrentShootParameters float PlantArchitecture::sumPlantLeafArea (const std::map< std::string, ShootParameters > & params)uint plantID) const
-

Update the parameters of all shoot types in the current plant model.

+

Sum the one-sided leaf area of all leaves in the plant.

Parameters
- - +
[in]shoot_type_labelUser-defined label for the shoot type to be updated.
[in]paramsUpdated parameters structure for the shoot type.
[in]plantIDID of the plant instance.
-
Note
This will overwrite any existing shoot parameter definitions.
+
Returns
Total one-sided leaf area of all leaves in the plant.
-

Definition at line 96 of file PlantLibrary.cpp.

+

Definition at line 2263 of file PlantArchitecture.cpp.

- -

◆ updateCurrentShootParameters() [2/2]

+ +

◆ updateCurrentShootParameters() [1/2]

@@ -2084,17 +2085,13 @@

void PlantArchitecture::updateCurrentShootParameters ( - const std::string & shoot_type_label, - - - + const std::map< std::string, ShootParameters > & params) - const ShootParameters & params )

-

Update the parameters of a single shoot type in the current plant model.

+

Update the parameters of all shoot types in the current plant model.

Parameters
@@ -2104,40 +2101,40 @@

Note
This will overwrite any existing shoot parameter definitions.
-

Definition at line 92 of file PlantLibrary.cpp.

+

Definition at line 104 of file PlantLibrary.cpp.

- -

◆ updateShootInternodeLength()

+ +

◆ updateCurrentShootParameters() [2/2]

[in]shoot_type_labelUser-defined label for the shoot type to be updated.
- + - - - - - - - - - - - + - +
void PlantArchitecture::updateShootInternodeLength void PlantArchitecture::updateCurrentShootParameters (uint plantID,
uint shootID,
float dt, const std::string & shoot_type_label,
bool update_context_geometry = true )const ShootParameters & params )
-

Definition at line 2153 of file PlantArchitecture.cpp.

+

Update the parameters of a single shoot type in the current plant model.

+
Parameters
+ + + +
[in]shoot_type_labelUser-defined label for the shoot type to be updated.
[in]paramsUpdated parameters structure for the shoot type.
+
+
+
Note
This will overwrite any existing shoot parameter definitions.
+ +

Definition at line 100 of file PlantLibrary.cpp.

@@ -2160,7 +2157,7 @@

-

Definition at line 436 of file InputOutput.cpp.

+

Definition at line 438 of file InputOutput.cpp.

@@ -2185,7 +2182,7 @@

-

Definition at line 1277 of file PlantArchitecture.h.

+

Definition at line 1302 of file PlantArchitecture.h.

@@ -2209,7 +2206,7 @@

-

Definition at line 1278 of file PlantArchitecture.h.

+

Definition at line 1303 of file PlantArchitecture.h.

diff --git a/doc/html/class_radiation_model.html b/doc/html/class_radiation_model.html index c546a987a..a09a9da4e 100644 --- a/doc/html/class_radiation_model.html +++ b/doc/html/class_radiation_model.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
@@ -1013,7 +1013,7 @@

Returns
Projected area fraction G(theta)
-

Definition at line 4824 of file RadiationModel.cpp.

+

Definition at line 4820 of file RadiationModel.cpp.

@@ -1076,7 +1076,7 @@

Definition at line 5625 of file RadiationModel.cpp.

+

Definition at line 5609 of file RadiationModel.cpp.

@@ -1121,7 +1121,7 @@

Definition at line 5664 of file RadiationModel.cpp.

+

Definition at line 5648 of file RadiationModel.cpp.

@@ -1623,7 +1623,7 @@

Returns
scale factor
-

Definition at line 5055 of file RadiationModel.cpp.

+

Definition at line 5051 of file RadiationModel.cpp.

@@ -1672,7 +1672,7 @@

Definition at line 3713 of file RadiationModel.cpp.

+

Definition at line 3709 of file RadiationModel.cpp.

@@ -1754,7 +1754,7 @@

Definition at line 3725 of file RadiationModel.cpp.

+

Definition at line 3721 of file RadiationModel.cpp.

@@ -2032,7 +2032,7 @@

Note
Before running the band simulation, you must 1) add at least one radiative band to the simulation (see addRadiationBand()), 2) update the Context geometry in the model (see updateGeometry()), and 3) update radiative properties in the model (see updateRadiativeProperties).
-

Definition at line 3102 of file RadiationModel.cpp.

+

Definition at line 3098 of file RadiationModel.cpp.

@@ -2060,7 +2060,7 @@

Note
Before running the band simulation, you must 1) add at least one radiative band to the simulation (see addRadiationBand()), 2) update the Context geometry in the model (see updateGeometry()), and 3) update radiative properties in the model (see updateRadiativeProperties).
-

Definition at line 3107 of file RadiationModel.cpp.

+

Definition at line 3103 of file RadiationModel.cpp.

@@ -2128,7 +2128,7 @@

Definition at line 4970 of file RadiationModel.cpp.

+

Definition at line 4966 of file RadiationModel.cpp.

@@ -2196,7 +2196,7 @@

Definition at line 5011 of file RadiationModel.cpp.

+

Definition at line 5007 of file RadiationModel.cpp.

@@ -2351,7 +2351,7 @@

-

Definition at line 4848 of file RadiationModel.cpp.

+

Definition at line 4844 of file RadiationModel.cpp.

@@ -2656,6 +2656,7 @@

Note
Default is 1000 rays/primitive.

Definition at line 79 of file RadiationModel.cpp.

@@ -2887,6 +2888,7 @@

Note
Default is 100 rays/primitive.

Definition at line 72 of file RadiationModel.cpp.

@@ -2958,7 +2960,7 @@

Definition at line 5603 of file RadiationModel.cpp.

+

Definition at line 5587 of file RadiationModel.cpp.

@@ -3390,7 +3392,7 @@

Definition at line 4853 of file RadiationModel.cpp.

+

Definition at line 4849 of file RadiationModel.cpp.

@@ -3412,7 +3414,7 @@

Note
updateGeometry() must be called before simulation can be run
-

Definition at line 1970 of file RadiationModel.cpp.

+

Definition at line 1966 of file RadiationModel.cpp.

@@ -3440,7 +3442,7 @@

Note
updateGeometry() must be called before simulation can be run
-

Definition at line 1974 of file RadiationModel.cpp.

+

Definition at line 1970 of file RadiationModel.cpp.

@@ -3546,7 +3548,7 @@

Definition at line 1422 of file RadiationModel.cpp.

+

Definition at line 1420 of file RadiationModel.cpp.

@@ -3590,7 +3592,7 @@

Definition at line 5257 of file RadiationModel.cpp.

+

Definition at line 5249 of file RadiationModel.cpp.

@@ -3651,7 +3653,7 @@

Definition at line 5380 of file RadiationModel.cpp.

+

Definition at line 5368 of file RadiationModel.cpp.

@@ -3712,7 +3714,7 @@

Definition at line 5487 of file RadiationModel.cpp.

+

Definition at line 5473 of file RadiationModel.cpp.

@@ -3762,7 +3764,7 @@

Definition at line 1388 of file RadiationModel.cpp.

+

Definition at line 1386 of file RadiationModel.cpp.

@@ -3812,7 +3814,7 @@

Definition at line 5311 of file RadiationModel.cpp.

+

Definition at line 5301 of file RadiationModel.cpp.

@@ -3868,7 +3870,7 @@

Definition at line 5167 of file RadiationModel.cpp.

+

Definition at line 5161 of file RadiationModel.cpp.

@@ -3924,7 +3926,7 @@

Definition at line 5078 of file RadiationModel.cpp.

+

Definition at line 5074 of file RadiationModel.cpp.

diff --git a/doc/html/class_solar_position.html b/doc/html/class_solar_position.html index 2d636d3ad..ea82a4f0f 100644 --- a/doc/html/class_solar_position.html +++ b/doc/html/class_solar_position.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
diff --git a/doc/html/class_stomatal_conductance_model.html b/doc/html/class_stomatal_conductance_model.html index e33838634..6287814b2 100644 --- a/doc/html/class_stomatal_conductance_model.html +++ b/doc/html/class_stomatal_conductance_model.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
diff --git a/doc/html/class_synthetic_annotation.html b/doc/html/class_synthetic_annotation.html index 19e98c25a..d2ee9c142 100644 --- a/doc/html/class_synthetic_annotation.html +++ b/doc/html/class_synthetic_annotation.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
diff --git a/doc/html/class_visualizer.html b/doc/html/class_visualizer.html index 544be417e..a2fc9bd82 100644 --- a/doc/html/class_visualizer.html +++ b/doc/html/class_visualizer.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
diff --git a/doc/html/class_voxel_intersection.html b/doc/html/class_voxel_intersection.html index 4f221e6d3..24d0a8ac6 100644 --- a/doc/html/class_voxel_intersection.html +++ b/doc/html/class_voxel_intersection.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
diff --git a/doc/html/class_weber_penn_tree.html b/doc/html/class_weber_penn_tree.html index 2c0ac0926..902a2b22b 100644 --- a/doc/html/class_weber_penn_tree.html +++ b/doc/html/class_weber_penn_tree.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
@@ -296,7 +296,7 @@

Definition at line 681 of file WeberPennTree.cpp.

+

Definition at line 693 of file WeberPennTree.cpp.

@@ -323,7 +323,7 @@

Definition at line 661 of file WeberPennTree.cpp.

+

Definition at line 673 of file WeberPennTree.cpp.

@@ -350,7 +350,7 @@

Definition at line 671 of file WeberPennTree.cpp.

+

Definition at line 683 of file WeberPennTree.cpp.

@@ -378,7 +378,7 @@

Returns
Set of tree parameters.
-

Definition at line 723 of file WeberPennTree.cpp.

+

Definition at line 735 of file WeberPennTree.cpp.

@@ -405,7 +405,7 @@

Definition at line 651 of file WeberPennTree.cpp.

+

Definition at line 663 of file WeberPennTree.cpp.

@@ -432,7 +432,7 @@

Definition at line 749 of file WeberPennTree.cpp.

+

Definition at line 761 of file WeberPennTree.cpp.

@@ -459,7 +459,7 @@

Definition at line 1407 of file WeberPennTree.cpp.

+

Definition at line 1467 of file WeberPennTree.cpp.

@@ -486,7 +486,7 @@

Definition at line 745 of file WeberPennTree.cpp.

+

Definition at line 757 of file WeberPennTree.cpp.

@@ -534,7 +534,7 @@

Definition at line 695 of file WeberPennTree.cpp.

+

Definition at line 707 of file WeberPennTree.cpp.

@@ -561,7 +561,7 @@

Definition at line 707 of file WeberPennTree.cpp.

+

Definition at line 719 of file WeberPennTree.cpp.

@@ -588,7 +588,7 @@

Definition at line 715 of file WeberPennTree.cpp.

+

Definition at line 727 of file WeberPennTree.cpp.

@@ -620,7 +620,7 @@

Definition at line 734 of file WeberPennTree.cpp.

+

Definition at line 746 of file WeberPennTree.cpp.

@@ -647,7 +647,7 @@

Definition at line 699 of file WeberPennTree.cpp.

+

Definition at line 711 of file WeberPennTree.cpp.

diff --git a/doc/html/classes.html b/doc/html/classes.html index 980a29133..a0d2c783e 100644 --- a/doc/html/classes.html +++ b/doc/html/classes.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
@@ -107,7 +107,7 @@
AerialHitPoint
AerialLiDARcloud
AerialScanMetadata
AxisRotation
B
-
BBcoefficients
BBLcoefficients
BeanParameters
BLConductanceModel
BMFcoefficients
Box (helios)
BWBcoefficients
+
BaseCanopyParameters
BaseGrapeVineParameters
BBcoefficients
BBLcoefficients
BeanParameters
BLConductanceModel
BMFcoefficients
Box (helios)
BWBcoefficients
C
CameraCalibration
CameraProperties
CanopyGenerator
Colormap
CompoundObject (helios)
Cone (helios)
ConicalCrownsCanopyParameters
Context (helios)
diff --git a/doc/html/classhelios_1_1_box.html b/doc/html/classhelios_1_1_box.html index 76b0a03fb..91dcd339d 100644 --- a/doc/html/classhelios_1_1_box.html +++ b/doc/html/classhelios_1_1_box.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
@@ -389,7 +389,7 @@

Definition at line 3851 of file Context.cpp.

+

Definition at line 3903 of file Context.cpp.

@@ -411,7 +411,7 @@

Definition at line 3890 of file Context.cpp.

+

Definition at line 3942 of file Context.cpp.

@@ -432,7 +432,7 @@

Definition at line 3871 of file Context.cpp.

+

Definition at line 3923 of file Context.cpp.

@@ -453,7 +453,7 @@

Definition at line 3906 of file Context.cpp.

+

Definition at line 3958 of file Context.cpp.

@@ -474,7 +474,7 @@

Definition at line 3914 of file Context.cpp.

+

Definition at line 3966 of file Context.cpp.

@@ -501,7 +501,7 @@

Definition at line 3910 of file Context.cpp.

+

Definition at line 3962 of file Context.cpp.

diff --git a/doc/html/classhelios_1_1_compound_object.html b/doc/html/classhelios_1_1_compound_object.html index 9b8436db6..7c27ccf90 100644 --- a/doc/html/classhelios_1_1_compound_object.html +++ b/doc/html/classhelios_1_1_compound_object.html @@ -38,7 +38,7 @@ Logo - @@ -402,7 +402,7 @@

Definition at line 2515 of file Context.cpp.

+

Definition at line 2510 of file Context.cpp.

@@ -429,7 +429,7 @@

Definition at line 2506 of file Context.cpp.

+

Definition at line 2501 of file Context.cpp.

@@ -450,7 +450,7 @@

Definition at line 2247 of file Context.cpp.

+

Definition at line 2242 of file Context.cpp.

@@ -499,7 +499,7 @@

Definition at line 2270 of file Context.cpp.

+

Definition at line 2265 of file Context.cpp.

@@ -520,7 +520,7 @@

Definition at line 2253 of file Context.cpp.

+

Definition at line 2248 of file Context.cpp.

@@ -1295,7 +1295,7 @@

Definition at line 2228 of file Context.cpp.

+

Definition at line 2223 of file Context.cpp.

@@ -1316,7 +1316,7 @@

Definition at line 2232 of file Context.cpp.

+

Definition at line 2227 of file Context.cpp.

@@ -1337,7 +1337,7 @@

Definition at line 2236 of file Context.cpp.

+

Definition at line 2231 of file Context.cpp.

@@ -1358,7 +1358,7 @@

Definition at line 2241 of file Context.cpp.

+

Definition at line 2236 of file Context.cpp.

@@ -1379,7 +1379,7 @@

Definition at line 2334 of file Context.cpp.

+

Definition at line 2329 of file Context.cpp.

@@ -1406,7 +1406,7 @@

Definition at line 2488 of file Context.cpp.

+

Definition at line 2483 of file Context.cpp.

@@ -1427,7 +1427,7 @@

Definition at line 2326 of file Context.cpp.

+

Definition at line 2321 of file Context.cpp.

@@ -1469,7 +1469,7 @@

Definition at line 2306 of file Context.cpp.

+

Definition at line 2301 of file Context.cpp.

@@ -1501,7 +1501,7 @@

Definition at line 2362 of file Context.cpp.

+

Definition at line 2357 of file Context.cpp.

@@ -1539,7 +1539,7 @@

Definition at line 2432 of file Context.cpp.

+

Definition at line 2427 of file Context.cpp.

@@ -1571,7 +1571,7 @@

Definition at line 2408 of file Context.cpp.

+

Definition at line 2403 of file Context.cpp.

@@ -1598,7 +1598,7 @@

Definition at line 2456 of file Context.cpp.

+

Definition at line 2451 of file Context.cpp.

@@ -1625,7 +1625,7 @@

Definition at line 2460 of file Context.cpp.

+

Definition at line 2455 of file Context.cpp.

@@ -1657,7 +1657,7 @@

Definition at line 2464 of file Context.cpp.

+

Definition at line 2459 of file Context.cpp.

@@ -1679,7 +1679,7 @@

-

Definition at line 2296 of file Context.cpp.

+

Definition at line 2291 of file Context.cpp.

@@ -1701,7 +1701,7 @@

-

Definition at line 2286 of file Context.cpp.

+

Definition at line 2281 of file Context.cpp.

@@ -2125,7 +2125,7 @@

Definition at line 2502 of file Context.cpp.

+

Definition at line 2497 of file Context.cpp.

@@ -2152,7 +2152,7 @@

Definition at line 2494 of file Context.cpp.

+

Definition at line 2489 of file Context.cpp.

@@ -2179,7 +2179,7 @@

Definition at line 2338 of file Context.cpp.

+

Definition at line 2333 of file Context.cpp.

@@ -2200,7 +2200,7 @@

overrideTextureColor(). Note that using the texture color is the default behavior.

-

Definition at line 2316 of file Context.cpp.

+

Definition at line 2311 of file Context.cpp.

diff --git a/doc/html/classhelios_1_1_cone.html b/doc/html/classhelios_1_1_cone.html index 30644145e..d3d4a3ebd 100644 --- a/doc/html/classhelios_1_1_cone.html +++ b/doc/html/classhelios_1_1_cone.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
@@ -427,7 +427,7 @@

Definition at line 4017 of file Context.cpp.

+

Definition at line 4069 of file Context.cpp.

@@ -449,7 +449,7 @@

Definition at line 4089 of file Context.cpp.

+

Definition at line 4141 of file Context.cpp.

@@ -470,7 +470,7 @@

Definition at line 4107 of file Context.cpp.

+

Definition at line 4159 of file Context.cpp.

@@ -498,7 +498,7 @@

Returns
Cartesian coordinate of the cone node center.
-

Definition at line 4054 of file Context.cpp.

+

Definition at line 4106 of file Context.cpp.

@@ -520,7 +520,7 @@

Returns
Vector of Cartesian coordinates of cone object nodes (length = 2).
-

Definition at line 4040 of file Context.cpp.

+

Definition at line 4092 of file Context.cpp.

@@ -542,7 +542,7 @@

Returns
Vector of radii at cone object nodes (length = 2).
-

Definition at line 4069 of file Context.cpp.

+

Definition at line 4121 of file Context.cpp.

@@ -570,7 +570,7 @@

Returns
Radius of the cone node.
-

Definition at line 4073 of file Context.cpp.

+

Definition at line 4125 of file Context.cpp.

@@ -591,7 +591,7 @@

Definition at line 4081 of file Context.cpp.

+

Definition at line 4133 of file Context.cpp.

@@ -612,7 +612,7 @@

Definition at line 4212 of file Context.cpp.

+

Definition at line 4264 of file Context.cpp.

@@ -639,7 +639,7 @@

Definition at line 4171 of file Context.cpp.

+

Definition at line 4223 of file Context.cpp.

@@ -666,7 +666,7 @@

Definition at line 4122 of file Context.cpp.

+

Definition at line 4174 of file Context.cpp.

@@ -693,7 +693,7 @@

Definition at line 4085 of file Context.cpp.

+

Definition at line 4137 of file Context.cpp.

diff --git a/doc/html/classhelios_1_1_context.html b/doc/html/classhelios_1_1_context.html index 8e84f9e8d..a6bb27ed5 100644 --- a/doc/html/classhelios_1_1_context.html +++ b/doc/html/classhelios_1_1_context.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
@@ -1026,6 +1026,9 @@ size_t getGlobalDataSize (const char *label) const  Get the size/length of global data.
  +std::vector< std::string > listGlobalData () const + List the labels for all global data in the Context.
+  bool doesGlobalDataExist (const char *label) const  Check if global data 'label' exists.
  @@ -1786,7 +1789,7 @@

Context destructor.

-

Definition at line 6847 of file Context.cpp.

+

Definition at line 6914 of file Context.cpp.

@@ -1832,7 +1835,7 @@

Returns
UUID of Patch
-

Definition at line 1223 of file Context.cpp.

+

Definition at line 1218 of file Context.cpp.

@@ -1877,7 +1880,7 @@

Returns
UUID of Patch
-

Definition at line 1219 of file Context.cpp.

+

Definition at line 1214 of file Context.cpp.

@@ -1922,7 +1925,7 @@

Returns
UUID of Voxel
-

Definition at line 1379 of file Context.cpp.

+

Definition at line 1374 of file Context.cpp.

@@ -1967,7 +1970,7 @@

Returns
UUID of Voxel
-

Definition at line 1375 of file Context.cpp.

+

Definition at line 1370 of file Context.cpp.

@@ -2095,7 +2098,7 @@

Definition at line 8064 of file Context.cpp.

+

Definition at line 8131 of file Context.cpp.

@@ -2139,7 +2142,7 @@

Definition at line 8057 of file Context.cpp.

+

Definition at line 8124 of file Context.cpp.

@@ -2170,7 +2173,7 @@

Definition at line 2525 of file Context.cpp.

+

Definition at line 2520 of file Context.cpp.

@@ -2957,7 +2960,7 @@

Definition at line 2547 of file Context.cpp.

+

Definition at line 2542 of file Context.cpp.

@@ -2984,7 +2987,7 @@

Definition at line 2537 of file Context.cpp.

+

Definition at line 2532 of file Context.cpp.

@@ -3011,7 +3014,7 @@

Definition at line 2529 of file Context.cpp.

+

Definition at line 2524 of file Context.cpp.

@@ -3038,7 +3041,7 @@

Definition at line 1806 of file Context.cpp.

+

Definition at line 1801 of file Context.cpp.

@@ -3065,7 +3068,7 @@

Definition at line 1796 of file Context.cpp.

+

Definition at line 1791 of file Context.cpp.

@@ -3092,7 +3095,7 @@

Definition at line 1788 of file Context.cpp.

+

Definition at line 1783 of file Context.cpp.

@@ -3291,7 +3294,7 @@

Definition at line 6543 of file Context.cpp.

+

Definition at line 6610 of file Context.cpp.

@@ -3347,7 +3350,7 @@

Definition at line 6549 of file Context.cpp.

+

Definition at line 6616 of file Context.cpp.

@@ -3375,7 +3378,7 @@

Returns
ID for copied object.
-

Definition at line 2614 of file Context.cpp.

+

Definition at line 2609 of file Context.cpp.

@@ -3403,7 +3406,7 @@

Returns
ID for copied object.
-

Definition at line 2627 of file Context.cpp.

+

Definition at line 2622 of file Context.cpp.

@@ -3463,7 +3466,7 @@

Returns
UUIDs for copied primitives
-

Definition at line 1560 of file Context.cpp.

+

Definition at line 1555 of file Context.cpp.

@@ -3491,7 +3494,7 @@

Returns
UUID for copied primitive
-

Definition at line 1573 of file Context.cpp.

+

Definition at line 1568 of file Context.cpp.

@@ -3561,7 +3564,7 @@

Definition at line 2223 of file Context.cpp.

+

Definition at line 2218 of file Context.cpp.

@@ -3605,7 +3608,7 @@

Definition at line 2198 of file Context.cpp.

+

Definition at line 2193 of file Context.cpp.

@@ -3632,7 +3635,7 @@

Definition at line 2129 of file Context.cpp.

+

Definition at line 2124 of file Context.cpp.

@@ -3659,7 +3662,7 @@

Definition at line 2152 of file Context.cpp.

+

Definition at line 2147 of file Context.cpp.

@@ -3686,7 +3689,7 @@

Definition at line 2175 of file Context.cpp.

+

Definition at line 2170 of file Context.cpp.

@@ -3713,7 +3716,7 @@

Definition at line 2588 of file Context.cpp.

+

Definition at line 2583 of file Context.cpp.

@@ -3740,7 +3743,7 @@

Definition at line 2594 of file Context.cpp.

+

Definition at line 2589 of file Context.cpp.

@@ -3767,7 +3770,7 @@

Definition at line 1525 of file Context.cpp.

+

Definition at line 1520 of file Context.cpp.

@@ -3794,7 +3797,7 @@

Definition at line 1531 of file Context.cpp.

+

Definition at line 1526 of file Context.cpp.

@@ -3822,7 +3825,7 @@

Returns
True/false
-

Definition at line 4447 of file Context_data.cpp.

+

Definition at line 4458 of file Context_data.cpp.

@@ -3854,7 +3857,7 @@

Definition at line 7851 of file Context.cpp.

+

Definition at line 7918 of file Context.cpp.

@@ -3914,7 +3917,7 @@

Definition at line 2570 of file Context.cpp.

+

Definition at line 2565 of file Context.cpp.

@@ -3975,7 +3978,7 @@

Returns
true if all primitives exist, false if any do not exist
-

Definition at line 1658 of file Context.cpp.

+

Definition at line 1653 of file Context.cpp.

@@ -4002,7 +4005,7 @@

Definition at line 1654 of file Context.cpp.

+

Definition at line 1649 of file Context.cpp.

@@ -4185,7 +4188,7 @@

Definition at line 2735 of file Context.cpp.

+

Definition at line 2730 of file Context.cpp.

@@ -4655,7 +4658,7 @@

Context.

Returns
Vector of IDs for all objects.
-

Definition at line 2574 of file Context.cpp.

+

Definition at line 2569 of file Context.cpp.

@@ -4676,7 +4679,7 @@

Context.

-

Definition at line 1758 of file Context.cpp.

+

Definition at line 1753 of file Context.cpp.

@@ -4703,7 +4706,7 @@

Definition at line 8099 of file Context.cpp.

+

Definition at line 8166 of file Context.cpp.

@@ -4730,7 +4733,7 @@

Definition at line 3864 of file Context.cpp.

+

Definition at line 3916 of file Context.cpp.

@@ -4757,7 +4760,7 @@

Definition at line 8103 of file Context.cpp.

+

Definition at line 8170 of file Context.cpp.

@@ -4784,7 +4787,7 @@

Definition at line 8107 of file Context.cpp.

+

Definition at line 8174 of file Context.cpp.

@@ -4811,7 +4814,7 @@

Definition at line 8111 of file Context.cpp.

+

Definition at line 8178 of file Context.cpp.

@@ -4838,7 +4841,7 @@

Definition at line 8147 of file Context.cpp.

+

Definition at line 8214 of file Context.cpp.

@@ -4866,7 +4869,7 @@

Returns
Dimension of cone object in the axial direction
-

Definition at line 8151 of file Context.cpp.

+

Definition at line 8218 of file Context.cpp.

@@ -4897,7 +4900,7 @@

Definition at line 8139 of file Context.cpp.

+

Definition at line 8206 of file Context.cpp.

@@ -4924,7 +4927,7 @@

Definition at line 8135 of file Context.cpp.

+

Definition at line 8202 of file Context.cpp.

@@ -4955,7 +4958,7 @@

Definition at line 8143 of file Context.cpp.

+

Definition at line 8210 of file Context.cpp.

@@ -4982,7 +4985,7 @@

Definition at line 8131 of file Context.cpp.

+

Definition at line 8198 of file Context.cpp.

@@ -5009,7 +5012,7 @@

Definition at line 4033 of file Context.cpp.

+

Definition at line 4085 of file Context.cpp.

@@ -5036,7 +5039,7 @@

Definition at line 8127 of file Context.cpp.

+

Definition at line 8194 of file Context.cpp.

@@ -5063,7 +5066,7 @@

Definition at line 8155 of file Context.cpp.

+

Definition at line 8222 of file Context.cpp.

@@ -5086,7 +5089,7 @@

Returns
Date vector
See also
setDate(), getJulianDate()
-

Definition at line 1102 of file Context.cpp.

+

Definition at line 1097 of file Context.cpp.

@@ -5113,7 +5116,7 @@

Definition at line 8115 of file Context.cpp.

+

Definition at line 8182 of file Context.cpp.

@@ -5140,7 +5143,7 @@

Definition at line 3932 of file Context.cpp.

+

Definition at line 3984 of file Context.cpp.

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Definition at line 8119 of file Context.cpp.

+

Definition at line 8186 of file Context.cpp.

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Definition at line 8123 of file Context.cpp.

+

Definition at line 8190 of file Context.cpp.

@@ -5241,7 +5244,7 @@

Definition at line 2066 of file Context.cpp.

+

Definition at line 2061 of file Context.cpp.

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Definition at line 2031 of file Context.cpp.

+

Definition at line 2026 of file Context.cpp.

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Definition at line 2115 of file Context.cpp.

+

Definition at line 2110 of file Context.cpp.

@@ -5349,7 +5352,7 @@

Definition at line 2101 of file Context.cpp.

+

Definition at line 2096 of file Context.cpp.

@@ -6132,7 +6135,7 @@

Returns
Julian day of year (1-366)
See also
setDate(), getDate()
-

Definition at line 1135 of file Context.cpp.

+

Definition at line 1130 of file Context.cpp.

@@ -6177,7 +6180,7 @@

Returns
Month string (e.g., Jan, Feb, Mar, etc)
See also
setDate(), getJulianDate()
-

Definition at line 1106 of file Context.cpp.

+

Definition at line 1101 of file Context.cpp.

@@ -6204,7 +6207,7 @@

Definition at line 7797 of file Context.cpp.

+

Definition at line 7864 of file Context.cpp.

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Definition at line 7880 of file Context.cpp.

+

Definition at line 7947 of file Context.cpp.

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Definition at line 7875 of file Context.cpp.

+

Definition at line 7942 of file Context.cpp.

@@ -6307,7 +6310,7 @@

Definition at line 7805 of file Context.cpp.

+

Definition at line 7872 of file Context.cpp.

@@ -6329,7 +6332,7 @@

Context.

Returns
Total number of objects that have been created in the Context
-

Definition at line 2566 of file Context.cpp.

+

Definition at line 2561 of file Context.cpp.

@@ -7259,7 +7262,7 @@

Definition at line 2559 of file Context.cpp.

+

Definition at line 2554 of file Context.cpp.

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Definition at line 7801 of file Context.cpp.

+

Definition at line 7868 of file Context.cpp.

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Definition at line 2911 of file Context.cpp.

+

Definition at line 2906 of file Context.cpp.

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Definition at line 2899 of file Context.cpp.

+

Definition at line 2894 of file Context.cpp.

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Definition at line 2892 of file Context.cpp.

+

Definition at line 2887 of file Context.cpp.

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Definition at line 7809 of file Context.cpp.

+

Definition at line 7876 of file Context.cpp.

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Definition at line 7813 of file Context.cpp.

+

Definition at line 7880 of file Context.cpp.

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Definition at line 2925 of file Context.cpp.

+

Definition at line 2920 of file Context.cpp.

@@ -7482,7 +7485,7 @@

Returns
Center position of Patch element.
Note
If the UUID passed to this method does not correspond to a Patch, an error will be thrown.
-

Definition at line 1688 of file Context.cpp.

+

Definition at line 1683 of file Context.cpp.

@@ -7511,7 +7514,7 @@

Returns
Length x width of Patch element.
Note
If the UUID passed to this method does not correspond to a Patch, an error will be thrown.
-

Definition at line 1679 of file Context.cpp.

+

Definition at line 1674 of file Context.cpp.

@@ -7538,7 +7541,7 @@

Definition at line 3991 of file Context.cpp.

+

Definition at line 4043 of file Context.cpp.

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Definition at line 8159 of file Context.cpp.

+

Definition at line 8226 of file Context.cpp.

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Definition at line 6930 of file Context.cpp.

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Definition at line 6997 of file Context.cpp.

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Definition at line 6939 of file Context.cpp.

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Definition at line 7006 of file Context.cpp.

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Definition at line 6934 of file Context.cpp.

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Definition at line 7001 of file Context.cpp.

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Definition at line 7004 of file Context.cpp.

+

Definition at line 7071 of file Context.cpp.

@@ -7722,7 +7725,7 @@

Definition at line 7008 of file Context.cpp.

+

Definition at line 7075 of file Context.cpp.

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Definition at line 7012 of file Context.cpp.

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Definition at line 7079 of file Context.cpp.

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Definition at line 6981 of file Context.cpp.

+

Definition at line 7048 of file Context.cpp.

@@ -8706,7 +8709,7 @@

Definition at line 6894 of file Context.cpp.

+

Definition at line 6961 of file Context.cpp.

@@ -8734,7 +8737,7 @@

Returns
Fraction of non-transparent area (=1 if primitive does not have a semi-transparent texture).
-

Definition at line 7098 of file Context.cpp.

+

Definition at line 7165 of file Context.cpp.

@@ -8762,7 +8765,7 @@

Returns
Path to texture map file.
-

Definition at line 7036 of file Context.cpp.

+

Definition at line 7103 of file Context.cpp.

@@ -8790,7 +8793,7 @@

Returns
Texture image resolution (columns x rows).
-

Definition at line 7044 of file Context.cpp.

+

Definition at line 7111 of file Context.cpp.

@@ -8818,7 +8821,7 @@

Returns
Transparency value (0 or 1) for each pixel in primitive texture map.
-

Definition at line 7064 of file Context.cpp.

+

Definition at line 7131 of file Context.cpp.

@@ -8845,7 +8848,7 @@

Definition at line 7052 of file Context.cpp.

+

Definition at line 7119 of file Context.cpp.

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Definition at line 6985 of file Context.cpp.

+

Definition at line 7052 of file Context.cpp.

@@ -8904,7 +8907,7 @@

Definition at line 6861 of file Context.cpp.

+

Definition at line 6928 of file Context.cpp.

@@ -8931,7 +8934,7 @@

Definition at line 6999 of file Context.cpp.

+

Definition at line 7066 of file Context.cpp.

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Definition at line 8017 of file Context.cpp.

+

Definition at line 8084 of file Context.cpp.

@@ -9007,7 +9010,7 @@

Definition at line 3395 of file Context.cpp.

+

Definition at line 3390 of file Context.cpp.

@@ -9034,7 +9037,7 @@

Definition at line 8021 of file Context.cpp.

+

Definition at line 8088 of file Context.cpp.

@@ -9061,7 +9064,7 @@

Definition at line 8025 of file Context.cpp.

+

Definition at line 8092 of file Context.cpp.

@@ -9088,7 +9091,7 @@

Definition at line 8029 of file Context.cpp.

+

Definition at line 8096 of file Context.cpp.

@@ -9115,7 +9118,7 @@

Definition at line 2957 of file Context.cpp.

+

Definition at line 2952 of file Context.cpp.

@@ -9142,7 +9145,7 @@

Definition at line 2929 of file Context.cpp.

+

Definition at line 2924 of file Context.cpp.

@@ -9171,7 +9174,7 @@

Returns
Center position of a Tile Object.
Note
If the ObjID passed to this method does not correspond to a Tile Object, an error will be thrown.
-

Definition at line 7993 of file Context.cpp.

+

Definition at line 8060 of file Context.cpp.

@@ -9198,7 +9201,7 @@

Definition at line 8005 of file Context.cpp.

+

Definition at line 8072 of file Context.cpp.

@@ -9225,7 +9228,7 @@

Definition at line 3297 of file Context.cpp.

+

Definition at line 3292 of file Context.cpp.

@@ -9252,7 +9255,7 @@

Definition at line 7997 of file Context.cpp.

+

Definition at line 8064 of file Context.cpp.

@@ -9279,7 +9282,7 @@

Definition at line 8001 of file Context.cpp.

+

Definition at line 8068 of file Context.cpp.

@@ -9306,7 +9309,7 @@

Definition at line 8009 of file Context.cpp.

+

Definition at line 8076 of file Context.cpp.

@@ -9333,7 +9336,7 @@

Definition at line 8013 of file Context.cpp.

+

Definition at line 8080 of file Context.cpp.

@@ -9356,7 +9359,7 @@

Returns
Time vector
See also
setTime()
-

Definition at line 1169 of file Context.cpp.

+

Definition at line 1164 of file Context.cpp.

@@ -9390,7 +9393,7 @@

Returns
Cartesian (x,y,z) coordinate of triangle vertices indexed at "vertex"
Note
If the UUID passed to this method does not correspond to a Triangle, an error will be thrown.
-

Definition at line 1706 of file Context.cpp.

+

Definition at line 1701 of file Context.cpp.

@@ -9417,7 +9420,7 @@

Definition at line 8045 of file Context.cpp.

+

Definition at line 8112 of file Context.cpp.

@@ -9444,7 +9447,7 @@

Definition at line 8041 of file Context.cpp.

+

Definition at line 8108 of file Context.cpp.

@@ -9471,7 +9474,7 @@

Definition at line 8037 of file Context.cpp.

+

Definition at line 8104 of file Context.cpp.

@@ -9498,7 +9501,7 @@

Definition at line 3471 of file Context.cpp.

+

Definition at line 3466 of file Context.cpp.

@@ -9530,7 +9533,7 @@

Definition at line 8053 of file Context.cpp.

+

Definition at line 8120 of file Context.cpp.

@@ -9557,7 +9560,7 @@

Definition at line 8033 of file Context.cpp.

+

Definition at line 8100 of file Context.cpp.

@@ -9584,7 +9587,7 @@

Definition at line 8049 of file Context.cpp.

+

Definition at line 8116 of file Context.cpp.

@@ -9611,7 +9614,7 @@

Definition at line 6899 of file Context.cpp.

+

Definition at line 6966 of file Context.cpp.

@@ -9642,7 +9645,7 @@

Definition at line 6904 of file Context.cpp.

+

Definition at line 6971 of file Context.cpp.

@@ -9671,7 +9674,7 @@

Returns
Center position of voxel element.
Note
If the UUID passed to this method does not correspond to a voxel, an error will be thrown.
-

Definition at line 1745 of file Context.cpp.

+

Definition at line 1740 of file Context.cpp.

@@ -9700,7 +9703,7 @@

Returns
Length x width x height of voxel element.
Note
If the UUID passed to this method does not correspond to a voxel, an error will be thrown.
-

Definition at line 1736 of file Context.cpp.

+

Definition at line 1731 of file Context.cpp.

@@ -9727,7 +9730,7 @@

Definition at line 7778 of file Context.cpp.

+

Definition at line 7845 of file Context.cpp.

@@ -9754,7 +9757,7 @@

Definition at line 1772 of file Context.cpp.

+

Definition at line 1767 of file Context.cpp.

@@ -9787,7 +9790,7 @@

Note
If global data is a vector, each value in the vector will be incremented by the same amount
-

Definition at line 4511 of file Context_data.cpp.

+

Definition at line 4522 of file Context_data.cpp.

@@ -9820,7 +9823,7 @@

Note
If global data is a vector, each value in the vector will be incremented by the same amount
-

Definition at line 4493 of file Context_data.cpp.

+

Definition at line 4504 of file Context_data.cpp.

@@ -9853,7 +9856,7 @@

Note
If global data is a vector, each value in the vector will be incremented by the same amount
-

Definition at line 4457 of file Context_data.cpp.

+

Definition at line 4468 of file Context_data.cpp.

@@ -9886,7 +9889,7 @@

Note
If global data is a vector, each value in the vector will be incremented by the same amount
-

Definition at line 4475 of file Context_data.cpp.

+

Definition at line 4486 of file Context_data.cpp.

@@ -10066,7 +10069,7 @@

markGeometryDirty() -

Definition at line 160 of file Context.cpp.

+

Definition at line 155 of file Context.cpp.

@@ -10094,7 +10097,7 @@

Returns
True if the object is hidden, false otherwise.
-

Definition at line 7790 of file Context.cpp.

+

Definition at line 7857 of file Context.cpp.

@@ -10122,7 +10125,7 @@

Returns
true if primitive is hidden, false if not
-

Definition at line 1781 of file Context.cpp.

+

Definition at line 1776 of file Context.cpp.

@@ -10149,7 +10152,29 @@

Definition at line 7094 of file Context.cpp.

+

Definition at line 7161 of file Context.cpp.

+ + + + +

◆ listGlobalData()

+ +
+
+ + + + + + + +
std::vector< std::string > Context::listGlobalData () const
+
+ +

List the labels for all global data in the Context.

+
Returns
Vector of labels for all global data
+ +

Definition at line 4447 of file Context_data.cpp.

@@ -10768,7 +10793,7 @@

isGeometryDirty() -

Definition at line 152 of file Context.cpp.

+

Definition at line 147 of file Context.cpp.

@@ -10792,7 +10817,7 @@

isGeometryDirty() -

Definition at line 156 of file Context.cpp.

+

Definition at line 151 of file Context.cpp.

@@ -10819,7 +10844,7 @@

Definition at line 7827 of file Context.cpp.

+

Definition at line 7894 of file Context.cpp.

@@ -10846,7 +10871,7 @@

Definition at line 7859 of file Context.cpp.

+

Definition at line 7926 of file Context.cpp.

@@ -10873,7 +10898,7 @@

Definition at line 7855 of file Context.cpp.

+

Definition at line 7922 of file Context.cpp.

@@ -10900,7 +10925,7 @@

Definition at line 7078 of file Context.cpp.

+

Definition at line 7145 of file Context.cpp.

@@ -10927,7 +10952,7 @@

Definition at line 7074 of file Context.cpp.

+

Definition at line 7141 of file Context.cpp.

@@ -10955,7 +10980,7 @@

Returns
True if transparency channel data exists, false otherwise
-

Definition at line 7056 of file Context.cpp.

+

Definition at line 7123 of file Context.cpp.

@@ -10982,7 +11007,7 @@

Definition at line 7376 of file Context.cpp.

+

Definition at line 7443 of file Context.cpp.

@@ -11009,7 +11034,7 @@

Definition at line 7102 of file Context.cpp.

+

Definition at line 7169 of file Context.cpp.

@@ -11031,7 +11056,7 @@

Returns
Random float from normal distribution
-

Definition at line 1199 of file Context.cpp.

+

Definition at line 1194 of file Context.cpp.

@@ -11064,7 +11089,7 @@

Note
If standard deviation is specified as negative, the absolute value is used.
-

Definition at line 1203 of file Context.cpp.

+

Definition at line 1198 of file Context.cpp.

@@ -11086,7 +11111,7 @@

Returns
Random float between 0 and 1
-

Definition at line 1173 of file Context.cpp.

+

Definition at line 1168 of file Context.cpp.

@@ -11119,7 +11144,7 @@

Returns
Random float between 'min' and 'max'
-

Definition at line 1177 of file Context.cpp.

+

Definition at line 1172 of file Context.cpp.

@@ -11152,7 +11177,7 @@

Returns
Random integer between 'min' and 'max'
-

Definition at line 1188 of file Context.cpp.

+

Definition at line 1183 of file Context.cpp.

@@ -11297,7 +11322,7 @@

Definition at line 2836 of file Context.cpp.

+

Definition at line 2831 of file Context.cpp.

@@ -11335,7 +11360,7 @@

Definition at line 2846 of file Context.cpp.

+

Definition at line 2841 of file Context.cpp.

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Definition at line 2856 of file Context.cpp.

+

Definition at line 2851 of file Context.cpp.

@@ -11417,7 +11442,7 @@

Definition at line 2832 of file Context.cpp.

+

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@@ -11455,7 +11480,7 @@

Definition at line 2842 of file Context.cpp.

+

Definition at line 2837 of file Context.cpp.

@@ -11499,7 +11524,7 @@

Definition at line 2852 of file Context.cpp.

+

Definition at line 2847 of file Context.cpp.

@@ -11537,7 +11562,7 @@

Definition at line 1419 of file Context.cpp.

+

Definition at line 1414 of file Context.cpp.

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+

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@@ -11619,7 +11644,7 @@

Definition at line 1448 of file Context.cpp.

+

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@@ -11657,7 +11682,7 @@

Definition at line 1415 of file Context.cpp.

+

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+

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+

Definition at line 1460 of file Context.cpp.

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+

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Definition at line 2862 of file Context.cpp.

+

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Definition at line 2876 of file Context.cpp.

+

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Definition at line 2872 of file Context.cpp.

+

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+

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+

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+

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+

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+

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@@ -12187,7 +12212,7 @@

Definition at line 8071 of file Context.cpp.

+

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@@ -12219,7 +12244,7 @@

Definition at line 8085 of file Context.cpp.

+

Definition at line 8152 of file Context.cpp.

@@ -12351,7 +12376,7 @@

See also
getDate()
-

Definition at line 1076 of file Context.cpp.

+

Definition at line 1071 of file Context.cpp.

@@ -12390,7 +12415,7 @@

See also
getDate()
-

Definition at line 1062 of file Context.cpp.

+

Definition at line 1057 of file Context.cpp.

@@ -12423,7 +12448,7 @@

See also
getDate()
-

Definition at line 1090 of file Context.cpp.

+

Definition at line 1085 of file Context.cpp.

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Definition at line 7845 of file Context.cpp.

+

Definition at line 7912 of file Context.cpp.

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Definition at line 7835 of file Context.cpp.

+

Definition at line 7902 of file Context.cpp.

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Definition at line 7841 of file Context.cpp.

+

Definition at line 7908 of file Context.cpp.

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+

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Definition at line 7821 of file Context.cpp.

+

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@@ -14728,7 +14753,7 @@

Definition at line 7817 of file Context.cpp.

+

Definition at line 7884 of file Context.cpp.

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Definition at line 7030 of file Context.cpp.

+

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@@ -14792,7 +14817,7 @@

Definition at line 7020 of file Context.cpp.

+

Definition at line 7087 of file Context.cpp.

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Definition at line 7026 of file Context.cpp.

+

Definition at line 7093 of file Context.cpp.

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+

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Definition at line 6888 of file Context.cpp.

+

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@@ -16638,7 +16663,7 @@

Definition at line 6865 of file Context.cpp.

+

Definition at line 6932 of file Context.cpp.

@@ -16670,7 +16695,7 @@

Definition at line 7040 of file Context.cpp.

+

Definition at line 7107 of file Context.cpp.

@@ -16702,7 +16727,7 @@

Definition at line 6993 of file Context.cpp.

+

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@@ -16734,7 +16759,7 @@

Definition at line 6989 of file Context.cpp.

+

Definition at line 7056 of file Context.cpp.

@@ -16766,7 +16791,7 @@

Definition at line 2967 of file Context.cpp.

+

Definition at line 2962 of file Context.cpp.

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Definition at line 3096 of file Context.cpp.

+

Definition at line 3091 of file Context.cpp.

@@ -16828,7 +16853,7 @@

Definition at line 1157 of file Context.cpp.

+

Definition at line 1152 of file Context.cpp.

@@ -16863,7 +16888,7 @@

Definition at line 1139 of file Context.cpp.

+

Definition at line 1134 of file Context.cpp.

@@ -16904,7 +16929,7 @@

Definition at line 1143 of file Context.cpp.

+

Definition at line 1138 of file Context.cpp.

@@ -16948,7 +16973,7 @@

Definition at line 1717 of file Context.cpp.

+

Definition at line 1712 of file Context.cpp.

@@ -16980,7 +17005,7 @@

Definition at line 8092 of file Context.cpp.

+

Definition at line 8159 of file Context.cpp.

@@ -17012,7 +17037,7 @@

Definition at line 8078 of file Context.cpp.

+

Definition at line 8145 of file Context.cpp.

@@ -17072,7 +17097,7 @@

Definition at line 2826 of file Context.cpp.

+

Definition at line 2821 of file Context.cpp.

@@ -17104,7 +17129,7 @@

Definition at line 2822 of file Context.cpp.

+

Definition at line 2817 of file Context.cpp.

@@ -17136,7 +17161,7 @@

Definition at line 1405 of file Context.cpp.

+

Definition at line 1400 of file Context.cpp.

@@ -17168,7 +17193,7 @@

Definition at line 1401 of file Context.cpp.

+

Definition at line 1396 of file Context.cpp.

@@ -17195,7 +17220,7 @@

Definition at line 7869 of file Context.cpp.

+

Definition at line 7936 of file Context.cpp.

@@ -17222,7 +17247,7 @@

Definition at line 7865 of file Context.cpp.

+

Definition at line 7932 of file Context.cpp.

@@ -17249,7 +17274,7 @@

Definition at line 7088 of file Context.cpp.

+

Definition at line 7155 of file Context.cpp.

@@ -17276,7 +17301,7 @@

Definition at line 7084 of file Context.cpp.

+

Definition at line 7151 of file Context.cpp.

diff --git a/doc/html/classhelios_1_1_disk.html b/doc/html/classhelios_1_1_disk.html index ed26b6b3d..2e63fab9f 100644 --- a/doc/html/classhelios_1_1_disk.html +++ b/doc/html/classhelios_1_1_disk.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
@@ -386,7 +386,7 @@

Definition at line 3919 of file Context.cpp.

+

Definition at line 3971 of file Context.cpp.

@@ -408,7 +408,7 @@

Definition at line 3955 of file Context.cpp.

+

Definition at line 4007 of file Context.cpp.

@@ -429,7 +429,7 @@

Definition at line 3939 of file Context.cpp.

+

Definition at line 3991 of file Context.cpp.

@@ -450,7 +450,7 @@

Definition at line 3971 of file Context.cpp.

+

Definition at line 4023 of file Context.cpp.

@@ -477,7 +477,7 @@

Definition at line 3975 of file Context.cpp.

+

Definition at line 4027 of file Context.cpp.

diff --git a/doc/html/classhelios_1_1_polymesh.html b/doc/html/classhelios_1_1_polymesh.html index a49926058..7a0cf251c 100644 --- a/doc/html/classhelios_1_1_polymesh.html +++ b/doc/html/classhelios_1_1_polymesh.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
@@ -372,7 +372,7 @@

Definition at line 3979 of file Context.cpp.

+

Definition at line 4031 of file Context.cpp.

@@ -394,7 +394,7 @@

Definition at line 3998 of file Context.cpp.

+

Definition at line 4050 of file Context.cpp.

diff --git a/doc/html/classhelios_1_1_sphere.html b/doc/html/classhelios_1_1_sphere.html index 700db426d..c5c2f5b21 100644 --- a/doc/html/classhelios_1_1_sphere.html +++ b/doc/html/classhelios_1_1_sphere.html @@ -38,7 +38,7 @@ Logo -
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diff --git a/doc/html/classhelios_1_1_texture.html b/doc/html/classhelios_1_1_texture.html index 7eea4cba4..9da5d4f57 100644 --- a/doc/html/classhelios_1_1_texture.html +++ b/doc/html/classhelios_1_1_texture.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
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Definition at line 135 of file Context.cpp.

diff --git a/doc/html/classhelios_1_1_tile.html b/doc/html/classhelios_1_1_tile.html index e57c65a61..b147d199d 100644 --- a/doc/html/classhelios_1_1_tile.html +++ b/doc/html/classhelios_1_1_tile.html @@ -38,7 +38,7 @@ Logo -
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Definition at line 3332 of file Context.cpp.

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Note
This will delete all prior child primitives and add new UUIDs
-

Definition at line 3332 of file Context.cpp.

+

Definition at line 3327 of file Context.cpp.

diff --git a/doc/html/classhelios_1_1_tube.html b/doc/html/classhelios_1_1_tube.html index 071797e97..0aaef06ec 100644 --- a/doc/html/classhelios_1_1_tube.html +++ b/doc/html/classhelios_1_1_tube.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
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Definition at line 3736 of file Context.cpp.

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Definition at line 3779 of file Context.cpp.

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Definition at line 3756 of file Context.cpp.

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Definition at line 3808 of file Context.cpp.

diff --git a/doc/html/classhelios_1_1_x_m_lparser.html b/doc/html/classhelios_1_1_x_m_lparser.html index bf8dcf33d..ea05c654d 100644 --- a/doc/html/classhelios_1_1_x_m_lparser.html +++ b/doc/html/classhelios_1_1_x_m_lparser.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
diff --git a/doc/html/context_globaldata.html b/doc/html/context_globaldata.html index 7ad6d93ff..456f5f7ab 100644 --- a/doc/html/context_globaldata.html +++ b/doc/html/context_globaldata.html @@ -38,7 +38,7 @@ Logo -
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diff --git a/doc/html/context_primdata.html b/doc/html/context_primdata.html index 0b06dce92..dd37c0732 100644 --- a/doc/html/context_primdata.html +++ b/doc/html/context_primdata.html @@ -38,7 +38,7 @@ Logo -
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diff --git a/doc/html/context_primitives.html b/doc/html/context_primitives.html index 3b8c5b043..53d8e9f57 100644 --- a/doc/html/context_primitives.html +++ b/doc/html/context_primitives.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
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diff --git a/doc/html/context_selftest.html b/doc/html/context_selftest.html index 686449532..19063597e 100644 --- a/doc/html/context_selftest.html +++ b/doc/html/context_selftest.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
diff --git a/doc/html/context_vectors.html b/doc/html/context_vectors.html index d03cdd8e9..7283c86c9 100644 --- a/doc/html/context_vectors.html +++ b/doc/html/context_vectors.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
@@ -111,9 +111,9 @@ TypeDescriptionData FieldsMember FunctionsCreation Function -vec22D vector of floatsx, ynormalize(), magnitude()make_vec2() +vec22D vector of floatsx, ynormalize(), magnitude()make_vec2() -vec33D vector of floatsx, y, znormalize(), magnitude()make_vec3() +vec33D vector of floatsx, y, znormalize(), magnitude()make_vec3() vec44D vector of floatsx, y, z, wnonemake_vec4() diff --git a/doc/html/core_2src_2self_test_8cpp.html b/doc/html/core_2src_2self_test_8cpp.html index bc98d4b2e..cb033755d 100644 --- a/doc/html/core_2src_2self_test_8cpp.html +++ b/doc/html/core_2src_2self_test_8cpp.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
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diff --git a/doc/html/core_2src_2self_test_8cpp_source.html b/doc/html/core_2src_2self_test_8cpp_source.html index 28ab7ef9a..656c7a96a 100644 --- a/doc/html/core_2src_2self_test_8cpp_source.html +++ b/doc/html/core_2src_2self_test_8cpp_source.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
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@@ -300,7 +300,7 @@
207 std::cerr << "failed: uint addTriangle(const vec3& v0, const vec3& v1, const vec3& v2, const RGBcolor &color ). Triangle::getType did not return `PRIMITIVE_TYPE_TRIANGLE'." << std::endl;
208 }
209 normal = cross( v1-v0, v2-v1 );
-
210 normal.normalize();
+
210 normal.normalize();
211 if( normal_r.x!=normal.x || normal_r.y!=normal.y || normal_r.z!=normal.z ){
212 error_count++;
213 std::cerr << "failed: uint addTriangle(const vec3& v0, const vec3& v1, const vec3& v2, const RGBcolor &color ). Triangle::getNormal did not return correct value." << std::endl;
@@ -1354,124 +1354,124 @@
helios::PrimitiveType
PrimitiveType
Type of primitive element.
Definition Context.h:31
helios::PRIMITIVE_TYPE_PATCH
@ PRIMITIVE_TYPE_PATCH
< Rectangular primitive
Definition Context.h:33
helios::PRIMITIVE_TYPE_TRIANGLE
@ PRIMITIVE_TYPE_TRIANGLE
< Triangular primitive
Definition Context.h:35
-
helios::CompoundObject::rotate
void rotate(float rotation_radians, const char *rotation_axis_xyz_string)
Method to rotate a Compound Object about the x-, y-, or z-axis.
Definition Context.cpp:2362
-
helios::CompoundObject::translate
void translate(const helios::vec3 &shift)
Method to translate/shift a Compound Object.
Definition Context.cpp:2338
-
helios::CompoundObject::getPrimitiveUUIDs
std::vector< uint > getPrimitiveUUIDs() const
Get the UUIDs for all primitives contained in the object.
Definition Context.cpp:2241
+
helios::CompoundObject::rotate
void rotate(float rotation_radians, const char *rotation_axis_xyz_string)
Method to rotate a Compound Object about the x-, y-, or z-axis.
Definition Context.cpp:2357
+
helios::CompoundObject::translate
void translate(const helios::vec3 &shift)
Method to translate/shift a Compound Object.
Definition Context.cpp:2333
+
helios::CompoundObject::getPrimitiveUUIDs
std::vector< uint > getPrimitiveUUIDs() const
Get the UUIDs for all primitives contained in the object.
Definition Context.cpp:2236
helios::CompoundObject::getObjectData
void getObjectData(const char *label, int &data) const
Get data associated with a object element (integer scalar)
Definition Context_data.cpp:3174
-
helios::Cone::getNodeCoordinates
std::vector< helios::vec3 > getNodeCoordinates() const
Get the Cartesian coordinates of each of the cone object nodes.
Definition Context.cpp:4040
-
helios::Cone::scaleLength
void scaleLength(float S)
Method to scale the length of the cone.
Definition Context.cpp:4122
-
helios::Cone::scaleGirth
void scaleGirth(float S)
Method to scale the girth of the cone.
Definition Context.cpp:4171
-
helios::Cone::getNodeRadii
std::vector< float > getNodeRadii() const
Get the radius at each of the cone object nodes.
Definition Context.cpp:4069
+
helios::Cone::getNodeCoordinates
std::vector< helios::vec3 > getNodeCoordinates() const
Get the Cartesian coordinates of each of the cone object nodes.
Definition Context.cpp:4092
+
helios::Cone::scaleLength
void scaleLength(float S)
Method to scale the length of the cone.
Definition Context.cpp:4174
+
helios::Cone::scaleGirth
void scaleGirth(float S)
Method to scale the girth of the cone.
Definition Context.cpp:4223
+
helios::Cone::getNodeRadii
std::vector< float > getNodeRadii() const
Get the radius at each of the cone object nodes.
Definition Context.cpp:4121
helios::Context
Stores the state associated with simulation.
Definition Context.h:1882
-
helios::Context::setTileObjectSubdivisionCount
void setTileObjectSubdivisionCount(const std::vector< uint > &ObjectIDs, const int2 &new_subdiv)
Change the subdivision count of a tile object.
Definition Context.cpp:2967
-
helios::Context::getPrimitiveColor
helios::RGBcolor getPrimitiveColor(uint UUID) const
Method to return the diffuse color of a Primitive.
Definition Context.cpp:7004
+
helios::Context::setTileObjectSubdivisionCount
void setTileObjectSubdivisionCount(const std::vector< uint > &ObjectIDs, const int2 &new_subdiv)
Change the subdivision count of a tile object.
Definition Context.cpp:2962
+
helios::Context::getPrimitiveColor
helios::RGBcolor getPrimitiveColor(uint UUID) const
Method to return the diffuse color of a Primitive.
Definition Context.cpp:7071
helios::Context::loadXML
std::vector< uint > loadXML(const char *filename, bool quiet=false)
Load inputs specified in an XML file.
Definition Context_fileIO.cpp:1217
-
helios::Context::translatePrimitive
void translatePrimitive(uint UUID, const vec3 &shift)
Translate a primitive using its UUID.
Definition Context.cpp:1401
-
helios::Context::getPrimitiveArea
float getPrimitiveArea(uint UUID) const
Method to return the surface area of a Primitive.
Definition Context.cpp:6930
+
helios::Context::translatePrimitive
void translatePrimitive(uint UUID, const vec3 &shift)
Translate a primitive using its UUID.
Definition Context.cpp:1396
+
helios::Context::getPrimitiveArea
float getPrimitiveArea(uint UUID) const
Method to return the surface area of a Primitive.
Definition Context.cpp:6997
helios::Context::loadTabularTimeseriesData
void loadTabularTimeseriesData(const std::string &data_file, const std::vector< std::string > &column_labels, const std::string &delimiter, const std::string &date_string_format="YYYYMMDD", uint headerlines=0)
Load tabular weather data from text file into timeseries.
Definition Context_fileIO.cpp:4544
helios::Context::getPrimitiveData
void getPrimitiveData(uint UUID, const char *label, int &data) const
Get data associated with a primitive element.
Definition Context_data.cpp:1001
-
helios::Context::deletePrimitive
void deletePrimitive(uint UUID)
Delete a single primitive from the context.
Definition Context.cpp:1531
+
helios::Context::deletePrimitive
void deletePrimitive(uint UUID)
Delete a single primitive from the context.
Definition Context.cpp:1526
helios::Context::doesObjectDataExist
bool doesObjectDataExist(uint objID, const char *label) const
Check if primitive data 'label' exists.
Definition Context_data.cpp:2908
-
helios::Context::getAllObjectIDs
std::vector< uint > getAllObjectIDs() const
Get the IDs for all Compound Objects in the Context.
Definition Context.cpp:2574
-
helios::Context::getConeObjectPointer
Cone * getConeObjectPointer(uint ObjID) const
Get a pointer to a Cone Compound Object.
Definition Context.cpp:4033
+
helios::Context::getAllObjectIDs
std::vector< uint > getAllObjectIDs() const
Get the IDs for all Compound Objects in the Context.
Definition Context.cpp:2569
+
helios::Context::getConeObjectPointer
Cone * getConeObjectPointer(uint ObjID) const
Get a pointer to a Cone Compound Object.
Definition Context.cpp:4085
helios::Context::getObjectData
void getObjectData(uint objID, const char *label, int &data) const
Get data associated with a compound object.
Definition Context_data.cpp:2740
-
helios::Context::getObjectPointer
CompoundObject * getObjectPointer(uint ObjID) const
Get a pointer to a Compound Object.
Definition Context.cpp:2559
-
helios::Context::getPatchCenter
helios::vec3 getPatchCenter(uint UUID) const
Get the Cartesian (x,y,z) center position of a patch element.
Definition Context.cpp:1688
+
helios::Context::getObjectPointer
CompoundObject * getObjectPointer(uint ObjID) const
Get a pointer to a Compound Object.
Definition Context.cpp:2554
+
helios::Context::getPatchCenter
helios::vec3 getPatchCenter(uint UUID) const
Get the Cartesian (x,y,z) center position of a patch element.
Definition Context.cpp:1683
helios::Context::filterPrimitivesByData
std::vector< uint > filterPrimitivesByData(const std::vector< uint > &UUIDs, const std::string &primitive_data_label, float filter_value, const std::string &comparator)
Filter a set of primitives based on their primitive data and a condition and float value.
Definition Context_data.cpp:2224
helios::Context::calculatePrimitiveDataSum
void calculatePrimitiveDataSum(const std::vector< uint > &UUIDs, const std::string &label, float &sum) const
Calculate sum of primitive data values (float) for a subset of primitives.
Definition Context_data.cpp:1532
-
helios::Context::getPrimitiveTextureFile
std::string getPrimitiveTextureFile(uint UUID) const
Get the path to texture map file for primitive. If primitive does not have a texture map,...
Definition Context.cpp:7036
-
helios::Context::getObjectCount
uint getObjectCount() const
Get the total number of objects that have been created in the Context.
Definition Context.cpp:2566
-
helios::Context::getPrimitiveTextureUV
std::vector< vec2 > getPrimitiveTextureUV(uint UUID) const
Get u-v texture coordinates at primitive vertices.
Definition Context.cpp:7052
-
helios::Context::setDate
void setDate(int day, int month, int year)
Set simulation date by day, month, year.
Definition Context.cpp:1062
-
helios::Context::setPrimitiveParentObjectID
void setPrimitiveParentObjectID(uint UUID, uint objID)
Method to set the ID of the parent object the primitive belongs to (default is object 0)
Definition Context.cpp:6865
-
helios::Context::doesGlobalDataExist
bool doesGlobalDataExist(const char *label) const
Check if global data 'label' exists.
Definition Context_data.cpp:4447
-
helios::Context::getPrimitiveType
PrimitiveType getPrimitiveType(uint UUID) const
Method to get the Primitive type.
Definition Context.cpp:6861
+
helios::Context::getPrimitiveTextureFile
std::string getPrimitiveTextureFile(uint UUID) const
Get the path to texture map file for primitive. If primitive does not have a texture map,...
Definition Context.cpp:7103
+
helios::Context::getObjectCount
uint getObjectCount() const
Get the total number of objects that have been created in the Context.
Definition Context.cpp:2561
+
helios::Context::getPrimitiveTextureUV
std::vector< vec2 > getPrimitiveTextureUV(uint UUID) const
Get u-v texture coordinates at primitive vertices.
Definition Context.cpp:7119
+
helios::Context::setDate
void setDate(int day, int month, int year)
Set simulation date by day, month, year.
Definition Context.cpp:1057
+
helios::Context::setPrimitiveParentObjectID
void setPrimitiveParentObjectID(uint UUID, uint objID)
Method to set the ID of the parent object the primitive belongs to (default is object 0)
Definition Context.cpp:6932
+
helios::Context::doesGlobalDataExist
bool doesGlobalDataExist(const char *label) const
Check if global data 'label' exists.
Definition Context_data.cpp:4458
+
helios::Context::getPrimitiveType
PrimitiveType getPrimitiveType(uint UUID) const
Method to get the Primitive type.
Definition Context.cpp:6928
helios::Context::setObjectData
void setObjectData(uint objID, const char *label, const int &data)
Add data value (int) associated with a compound object.
Definition Context_data.cpp:2392
-
helios::Context::getPrimitiveSolidFraction
float getPrimitiveSolidFraction(uint UUID) const
Get fraction of primitive surface area that is non-transparent.
Definition Context.cpp:7098
+
helios::Context::getPrimitiveSolidFraction
float getPrimitiveSolidFraction(uint UUID) const
Get fraction of primitive surface area that is non-transparent.
Definition Context.cpp:7165
helios::Context::doesPrimitiveDataExist
bool doesPrimitiveDataExist(uint UUID, const char *label) const
Check if primitive data 'label' exists.
Definition Context_data.cpp:1169
-
helios::Context::getObjectPrimitiveUUIDs
std::vector< uint > getObjectPrimitiveUUIDs(uint ObjID) const
Get primitive UUIDs associated with compound object (single object ID input)
Definition Context.cpp:2892
-
helios::Context::copyPrimitive
uint copyPrimitive(uint UUID)
Make a copy of a primitive from the context.
Definition Context.cpp:1573
+
helios::Context::getObjectPrimitiveUUIDs
std::vector< uint > getObjectPrimitiveUUIDs(uint ObjID) const
Get primitive UUIDs associated with compound object (single object ID input)
Definition Context.cpp:2887
+
helios::Context::copyPrimitive
uint copyPrimitive(uint UUID)
Make a copy of a primitive from the context.
Definition Context.cpp:1568
helios::Context::loadOBJ
std::vector< uint > loadOBJ(const char *filename, bool silent=false)
Load geometry contained in a Wavefront OBJ file (.obj). Model will be placed at the origin without an...
Definition Context_fileIO.cpp:3734
helios::Context::calculatePrimitiveDataMean
void calculatePrimitiveDataMean(const std::vector< uint > &UUIDs, const std::string &label, float &mean) const
Calculate mean of primitive data values (float) for a subset of primitives.
Definition Context_data.cpp:1304
helios::Context::getGlobalData
void getGlobalData(const char *label, int &data) const
Get global data value (scalar integer)
Definition Context_data.cpp:4053
-
helios::Context::getAllUUIDs
std::vector< uint > getAllUUIDs() const
Get all primitive UUIDs currently in the Context.
Definition Context.cpp:1758
-
helios::Context::getTileObjectAreaRatio
float getTileObjectAreaRatio(uint ObjectID) const
Get the area ratio of a tile object (total object area / sub-patch area)
Definition Context.cpp:2929
+
helios::Context::getAllUUIDs
std::vector< uint > getAllUUIDs() const
Get all primitive UUIDs currently in the Context.
Definition Context.cpp:1753
+
helios::Context::getTileObjectAreaRatio
float getTileObjectAreaRatio(uint ObjectID) const
Get the area ratio of a tile object (total object area / sub-patch area)
Definition Context.cpp:2924
helios::Context::setGlobalData
void setGlobalData(const char *label, const int &data)
Add global data value (int)
Definition Context_data.cpp:3769
-
helios::Context::scalePrimitive
void scalePrimitive(uint UUID, const helios::vec3 &S)
Scale a primitive using its UUID relative to the origin (0,0,0)
Definition Context.cpp:1486
-
helios::Context::getPatchSize
helios::vec2 getPatchSize(uint UUID) const
Get the size of a patch element.
Definition Context.cpp:1679
-
helios::Context::getPrimitiveBoundingBox
void getPrimitiveBoundingBox(uint UUID, vec3 &min_corner, vec3 &max_corner) const
Get the axis-aligned bounding box for a single primitive.
Definition Context.cpp:6934
+
helios::Context::scalePrimitive
void scalePrimitive(uint UUID, const helios::vec3 &S)
Scale a primitive using its UUID relative to the origin (0,0,0)
Definition Context.cpp:1481
+
helios::Context::getPatchSize
helios::vec2 getPatchSize(uint UUID) const
Get the size of a patch element.
Definition Context.cpp:1674
+
helios::Context::getPrimitiveBoundingBox
void getPrimitiveBoundingBox(uint UUID, vec3 &min_corner, vec3 &max_corner) const
Get the axis-aligned bounding box for a single primitive.
Definition Context.cpp:7001
helios::Context::writeXML
void writeXML(const char *filename, bool quiet=false) const
Write Context geometry and data to XML file for all UUIDs in the context.
Definition Context_fileIO.cpp:2658
-
helios::Context::getPrimitiveNormal
helios::vec3 getPrimitiveNormal(uint UUID) const
Method to return the normal vector of a Primitive.
Definition Context.cpp:6981
+
helios::Context::getPrimitiveNormal
helios::vec3 getPrimitiveNormal(uint UUID) const
Method to return the normal vector of a Primitive.
Definition Context.cpp:7048
helios::Context::setPrimitiveData
void setPrimitiveData(const uint &UUID, const char *label, const int &data)
Add data value (int) associated with a primitive element.
Definition Context_data.cpp:655
helios::Context::calculatePrimitiveDataAreaWeightedMean
void calculatePrimitiveDataAreaWeightedMean(const std::vector< uint > &UUIDs, const std::string &label, float &awt_mean) const
Calculate mean of primitive data values (float) for a subset of primitives, where each value in the m...
Definition Context_data.cpp:1413
-
helios::Context::doesPrimitiveExist
bool doesPrimitiveExist(uint UUID) const
Check if primitive exists for a given UUID.
Definition Context.cpp:1654
-
helios::Context::getTileObjectPointer
Tile * getTileObjectPointer(uint ObjID) const
Get a pointer to a Tile Compound Object.
Definition Context.cpp:3297
-
helios::Context::getBoxObjectVolume
float getBoxObjectVolume(uint ObjID) const
get the volume of a Box object from the context
Definition Context.cpp:8111
-
helios::Context::setTime
void setTime(int minute, int hour)
Set simulation time.
Definition Context.cpp:1139
-
helios::Context::getPrimitiveVertices
std::vector< helios::vec3 > getPrimitiveVertices(uint UUID) const
Method to return the (x,y,z) coordinates of the vertices of a Primitive.
Definition Context.cpp:6999
+
helios::Context::doesPrimitiveExist
bool doesPrimitiveExist(uint UUID) const
Check if primitive exists for a given UUID.
Definition Context.cpp:1649
+
helios::Context::getTileObjectPointer
Tile * getTileObjectPointer(uint ObjID) const
Get a pointer to a Tile Compound Object.
Definition Context.cpp:3292
+
helios::Context::getBoxObjectVolume
float getBoxObjectVolume(uint ObjID) const
get the volume of a Box object from the context
Definition Context.cpp:8178
+
helios::Context::setTime
void setTime(int minute, int hour)
Set simulation time.
Definition Context.cpp:1134
+
helios::Context::getPrimitiveVertices
std::vector< helios::vec3 > getPrimitiveVertices(uint UUID) const
Method to return the (x,y,z) coordinates of the vertices of a Primitive.
Definition Context.cpp:7066
helios::Context::selfTest
static int selfTest()
Run a self-test of the Context. The Context self-test runs through validation checks of Context-relat...
Definition selfTest.cpp:20
-
helios::getFileExtension
std::string getFileExtension(const std::string &filepath)
Parse a file string to get the extension.
Definition global.cpp:2991
-
helios::getFileName
std::string getFileName(const std::string &filepath)
Parse a file string to get the filename including extension.
Definition global.cpp:3032
+
helios::getFileExtension
std::string getFileExtension(const std::string &filepath)
Parse a file string to get the extension.
Definition global.cpp:2993
+
helios::getFileName
std::string getFileName(const std::string &filepath)
Parse a file string to get the filename including extension.
Definition global.cpp:3034
helios::JulianDay
int JulianDay(int day, int month, int year)
Convert calendar day (day,month,year) to Julian day.
Definition global.cpp:1268
-
helios::getFileStem
std::string getFileStem(const std::string &filepath)
Parse a file string to get the filename without extension.
Definition global.cpp:3017
-
helios::getFilePath
std::string getFilePath(const std::string &filepath, bool trailingslash=true)
Parse a file string to get the path (i.e., portion of the string before the file name).
Definition global.cpp:3043
+
helios::getFileStem
std::string getFileStem(const std::string &filepath)
Parse a file string to get the filename without extension.
Definition global.cpp:3019
+
helios::getFilePath
std::string getFilePath(const std::string &filepath, bool trailingslash=true)
Parse a file string to get the path (i.e., portion of the string before the file name).
Definition global.cpp:3045
helios::nullrotation
SphericalCoord nullrotation
Default null SphericalCoord that applies no rotation.
Definition global.cpp:57
-
helios::Context::addDiskObject
uint addDiskObject(uint Ndivs, const helios::vec3 &center, const helios::vec2 &size)
Add new Disk geometric primitive to the Context given its center, and size.
Definition Context.cpp:5133
-
helios::Context::addTubeObject
uint addTubeObject(uint radial_subdivisions, const std::vector< vec3 > &nodes, const std::vector< float > &radius)
Add a 3D tube compound object to the Context.
Definition Context.cpp:4638
-
helios::Context::addConeObject
uint addConeObject(uint Ndivs, const vec3 &node0, const vec3 &node1, float radius0, float radius1)
Add a 3D cone compound object to the Context.
Definition Context.cpp:5303
-
helios::Context::addBoxObject
uint addBoxObject(const vec3 &center, const vec3 &size, const int3 &subdiv)
Add a rectangular prism tessellated with Patch primitives.
Definition Context.cpp:4877
-
helios::Context::addTileObject
uint addTileObject(const vec3 &center, const vec2 &size, const SphericalCoord &rotation, const int2 &subdiv)
Add a patch that is subdivided into a regular grid of sub-patches (tiled)
Definition Context.cpp:4460
-
helios::Context::addSphereObject
uint addSphereObject(uint Ndivs, const vec3 &center, float radius)
Add a spherical compound object to the Context.
Definition Context.cpp:4220
+
helios::Context::addDiskObject
uint addDiskObject(uint Ndivs, const helios::vec3 &center, const helios::vec2 &size)
Add new Disk geometric primitive to the Context given its center, and size.
Definition Context.cpp:5200
+
helios::Context::addTubeObject
uint addTubeObject(uint radial_subdivisions, const std::vector< vec3 > &nodes, const std::vector< float > &radius)
Add a 3D tube compound object to the Context.
Definition Context.cpp:4690
+
helios::Context::addConeObject
uint addConeObject(uint Ndivs, const vec3 &node0, const vec3 &node1, float radius0, float radius1)
Add a 3D cone compound object to the Context.
Definition Context.cpp:5370
+
helios::Context::addBoxObject
uint addBoxObject(const vec3 &center, const vec3 &size, const int3 &subdiv)
Add a rectangular prism tessellated with Patch primitives.
Definition Context.cpp:4944
+
helios::Context::addTileObject
uint addTileObject(const vec3 &center, const vec2 &size, const SphericalCoord &rotation, const int2 &subdiv)
Add a patch that is subdivided into a regular grid of sub-patches (tiled)
Definition Context.cpp:4512
+
helios::Context::addSphereObject
uint addSphereObject(uint Ndivs, const vec3 &center, float radius)
Add a spherical compound object to the Context.
Definition Context.cpp:4272
helios::cart2sphere
SphericalCoord cart2sphere(const vec3 &Cartesian)
Convert Cartesian coordinates to spherical coordinates.
Definition global.cpp:610
-
helios::spline_interp3
helios::vec3 spline_interp3(float u, const vec3 &x_start, const vec3 &tan_start, const vec3 &x_end, const vec3 &tan_end)
Function to perform cubic Hermite spline interpolation.
Definition global.cpp:2684
+
helios::spline_interp3
helios::vec3 spline_interp3(float u, const vec3 &x_start, const vec3 &tan_start, const vec3 &x_end, const vec3 &tan_end)
Function to perform cubic Hermite spline interpolation.
Definition global.cpp:2686
helios::sphere2cart
vec3 sphere2cart(const SphericalCoord &Spherical)
Convert Spherical coordinates to Cartesian coordinates.
Definition global.cpp:617
helios::acos_safe
float acos_safe(float x)
arccosine function to handle cases when round-off errors cause an argument <-1 or >1,...
Definition global.cpp:241
-
helios::Context::addTriangle
uint addTriangle(const helios::vec3 &vertex0, const helios::vec3 &vertex1, const helios::vec3 &vertex2)
Add new Triangle geometric primitive.
Definition Context.cpp:1323
-
helios::Context::getPrimitiveCount
uint getPrimitiveCount() const
Get the total number of Primitives in the Context.
Definition Context.cpp:1754
-
helios::Context::addPatch
uint addPatch()
Add new default Patch geometric primitive, which is centered at the origin (0,0,0),...
Definition Context.cpp:1207
-
helios::Context::setCurrentTimeseriesPoint
void setCurrentTimeseriesPoint(const char *label, uint index)
Set the Context date and time by providing the index of a timeseries data point.
Definition Context.cpp:1881
-
helios::Context::queryTimeseriesTime
Time queryTimeseriesTime(const char *label, uint index) const
Get the time associated with a timeseries data point.
Definition Context.cpp:1953
-
helios::Context::getTimeseriesLength
uint getTimeseriesLength(const char *label) const
Get the length of timeseries data.
Definition Context.cpp:2009
-
helios::Context::queryTimeseriesData
float queryTimeseriesData(const char *label, const Date &date, const Time &time) const
Get a timeseries data point by specifying a date and time vector.
Definition Context.cpp:1889
-
helios::Context::addTimeseriesData
void addTimeseriesData(const char *label, float value, const Date &date, const Time &time)
Add a data point to timeseries of data.
Definition Context.cpp:1818
-
helios::Context::queryTimeseriesDate
Date queryTimeseriesDate(const char *label, uint index) const
Get the date associated with a timeseries data point.
Definition Context.cpp:1989
+
helios::Context::addTriangle
uint addTriangle(const helios::vec3 &vertex0, const helios::vec3 &vertex1, const helios::vec3 &vertex2)
Add new Triangle geometric primitive.
Definition Context.cpp:1318
+
helios::Context::getPrimitiveCount
uint getPrimitiveCount() const
Get the total number of Primitives in the Context.
Definition Context.cpp:1749
+
helios::Context::addPatch
uint addPatch()
Add new default Patch geometric primitive, which is centered at the origin (0,0,0),...
Definition Context.cpp:1202
+
helios::Context::setCurrentTimeseriesPoint
void setCurrentTimeseriesPoint(const char *label, uint index)
Set the Context date and time by providing the index of a timeseries data point.
Definition Context.cpp:1876
+
helios::Context::queryTimeseriesTime
Time queryTimeseriesTime(const char *label, uint index) const
Get the time associated with a timeseries data point.
Definition Context.cpp:1948
+
helios::Context::getTimeseriesLength
uint getTimeseriesLength(const char *label) const
Get the length of timeseries data.
Definition Context.cpp:2004
+
helios::Context::queryTimeseriesData
float queryTimeseriesData(const char *label, const Date &date, const Time &time) const
Get a timeseries data point by specifying a date and time vector.
Definition Context.cpp:1884
+
helios::Context::addTimeseriesData
void addTimeseriesData(const char *label, float value, const Date &date, const Time &time)
Add a data point to timeseries of data.
Definition Context.cpp:1813
+
helios::Context::queryTimeseriesDate
Date queryTimeseriesDate(const char *label, uint index) const
Get the date associated with a timeseries data point.
Definition Context.cpp:1984
helios::make_int2
int2 make_int2(int x, int y)
Make an int2 vector from two ints.
Definition helios_vector_types.h:99
-
helios::make_Time
Time make_Time(int hour, int minute)
Make a Time vector.
Definition helios_vector_types.h:1424
-
helios::make_vec2
vec2 make_vec2(float x, float y)
Make a vec2 from two floats.
Definition helios_vector_types.h:432
-
helios::make_Date
Date make_Date(int day, int month, int year)
Make a Date vector.
Definition helios_vector_types.h:1238
-
helios::Julian2Calendar
Date Julian2Calendar(int JulianDay, int year)
Convert a Julian day to a calendar Date vector.
Definition helios_vector_types.h:1265
+
helios::make_Time
Time make_Time(int hour, int minute)
Make a Time vector.
Definition helios_vector_types.h:1427
+
helios::make_vec2
vec2 make_vec2(float x, float y)
Make a vec2 from two floats.
Definition helios_vector_types.h:433
+
helios::make_Date
Date make_Date(int day, int month, int year)
Make a Date vector.
Definition helios_vector_types.h:1241
+
helios::Julian2Calendar
Date Julian2Calendar(int JulianDay, int year)
Convert a Julian day to a calendar Date vector.
Definition helios_vector_types.h:1268
helios::make_int3
int3 make_int3(int X, int Y, int Z)
Make an int3 vector from three ints.
Definition helios_vector_types.h:198
-
helios::make_vec3
vec3 make_vec3(float x, float y, float z)
Make a vec3 from three floats.
Definition helios_vector_types.h:587
-
helios::cross
vec3 cross(const vec3 &a, const vec3 &b)
Cross product of two vec3 vectors.
Definition helios_vector_types.h:597
-
helios::make_SphericalCoord
SphericalCoord make_SphericalCoord(float elevation_radians, float azimuth_radians)
Make a SphericalCoord by specifying elevation and azimuth.
Definition helios_vector_types.h:1536
- -
helios::Date::month
int month
Month of year.
Definition helios_vector_types.h:1171
-
helios::Date::day
int day
Day of month.
Definition helios_vector_types.h:1169
-
helios::Date::year
int year
Year in YYYY format.
Definition helios_vector_types.h:1173
-
helios::RGBcolor
R-G-B color vector.
Definition helios_vector_types.h:841
-
helios::RGBcolor::b
float b
Blue color component.
Definition helios_vector_types.h:852
-
helios::RGBcolor::r
float r
Red color component.
Definition helios_vector_types.h:846
-
helios::RGBcolor::g
float g
Green color component.
Definition helios_vector_types.h:849
-
helios::SphericalCoord
Vector of spherical coordinates (elevation,azimuth)
Definition helios_vector_types.h:1468
- -
helios::SphericalCoord::zenith
const float & zenith
Zenithal angle (radians)
Definition helios_vector_types.h:1487
-
helios::SphericalCoord::elevation
const float & elevation
Elevation angle (radians)
Definition helios_vector_types.h:1482
-
helios::SphericalCoord::azimuth
float azimuth
Azimuthal angle (radians)
Definition helios_vector_types.h:1489
- -
helios::Time::second
int second
Second of minute.
Definition helios_vector_types.h:1352
-
helios::Time::hour
int hour
Hour of day.
Definition helios_vector_types.h:1356
-
helios::Time::minute
int minute
Minute of hour.
Definition helios_vector_types.h:1354
+
helios::make_vec3
vec3 make_vec3(float x, float y, float z)
Make a vec3 from three floats.
Definition helios_vector_types.h:589
+
helios::cross
vec3 cross(const vec3 &a, const vec3 &b)
Cross product of two vec3 vectors.
Definition helios_vector_types.h:599
+
helios::make_SphericalCoord
SphericalCoord make_SphericalCoord(float elevation_radians, float azimuth_radians)
Make a SphericalCoord by specifying elevation and azimuth.
Definition helios_vector_types.h:1539
+ +
helios::Date::month
int month
Month of year.
Definition helios_vector_types.h:1174
+
helios::Date::day
int day
Day of month.
Definition helios_vector_types.h:1172
+
helios::Date::year
int year
Year in YYYY format.
Definition helios_vector_types.h:1176
+
helios::RGBcolor
R-G-B color vector.
Definition helios_vector_types.h:844
+
helios::RGBcolor::b
float b
Blue color component.
Definition helios_vector_types.h:855
+
helios::RGBcolor::r
float r
Red color component.
Definition helios_vector_types.h:849
+
helios::RGBcolor::g
float g
Green color component.
Definition helios_vector_types.h:852
+
helios::SphericalCoord
Vector of spherical coordinates (elevation,azimuth)
Definition helios_vector_types.h:1471
+ +
helios::SphericalCoord::zenith
const float & zenith
Zenithal angle (radians)
Definition helios_vector_types.h:1490
+
helios::SphericalCoord::elevation
const float & elevation
Elevation angle (radians)
Definition helios_vector_types.h:1485
+
helios::SphericalCoord::azimuth
float azimuth
Azimuthal angle (radians)
Definition helios_vector_types.h:1492
+ +
helios::Time::second
int second
Second of minute.
Definition helios_vector_types.h:1355
+
helios::Time::hour
int hour
Hour of day.
Definition helios_vector_types.h:1359
+
helios::Time::minute
int minute
Minute of hour.
Definition helios_vector_types.h:1357
helios::int2
Vector of two elements of type 'int'.
Definition helios_vector_types.h:44
helios::int3
Vector of three elements of type 'int'.
Definition helios_vector_types.h:146
helios::vec2
Vector of two elements of type 'float'.
Definition helios_vector_types.h:346
helios::vec2::x
float x
First element in vector.
Definition helios_vector_types.h:350
helios::vec2::y
float y
Second element in vector.
Definition helios_vector_types.h:352
-
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:502
-
helios::vec3::x
float x
First element in vector.
Definition helios_vector_types.h:506
-
helios::vec3::z
float z
Third element in vector.
Definition helios_vector_types.h:510
-
helios::vec3::normalize
void normalize()
Normalize vector components such that the magnitude is unity.
Definition helios_vector_types.h:513
-
helios::vec3::y
float y
Second element in vector.
Definition helios_vector_types.h:508
-
helios::vec3::magnitude
float magnitude() const
Compute the vector magnitude.
Definition helios_vector_types.h:524
+
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:503
+
helios::vec3::normalize
vec3 normalize()
Normalize vector components such that the magnitude is unity.
Definition helios_vector_types.h:514
+
helios::vec3::x
float x
First element in vector.
Definition helios_vector_types.h:507
+
helios::vec3::z
float z
Third element in vector.
Definition helios_vector_types.h:511
+
helios::vec3::y
float y
Second element in vector.
Definition helios_vector_types.h:509
+
helios::vec3::magnitude
float magnitude() const
Compute the vector magnitude.
Definition helios_vector_types.h:526
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diff --git a/doc/html/dir_e68e8157741866f444e17edd764ebbae.html b/doc/html/dir_e68e8157741866f444e17edd764ebbae.html index 233289ec1..f047d2bdc 100644 --- a/doc/html/dir_e68e8157741866f444e17edd764ebbae.html +++ b/doc/html/dir_e68e8157741866f444e17edd764ebbae.html @@ -38,7 +38,7 @@ Logo -
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diff --git a/doc/html/dir_e725f6d562ac5b3216da834679296cd3.html b/doc/html/dir_e725f6d562ac5b3216da834679296cd3.html index 184533e35..e8ace17d8 100644 --- a/doc/html/dir_e725f6d562ac5b3216da834679296cd3.html +++ b/doc/html/dir_e725f6d562ac5b3216da834679296cd3.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
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diff --git a/doc/html/dir_e771e57a540d4f14ef5ec2c81b56a7b6.html b/doc/html/dir_e771e57a540d4f14ef5ec2c81b56a7b6.html index 127f9ba91..accc69a7b 100644 --- a/doc/html/dir_e771e57a540d4f14ef5ec2c81b56a7b6.html +++ b/doc/html/dir_e771e57a540d4f14ef5ec2c81b56a7b6.html @@ -38,7 +38,7 @@ Logo -
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diff --git a/doc/html/dir_e8ed08f2d5f8ac3e3b5447bfe7f0fce5.html b/doc/html/dir_e8ed08f2d5f8ac3e3b5447bfe7f0fce5.html index c071b3385..e0df667ba 100644 --- a/doc/html/dir_e8ed08f2d5f8ac3e3b5447bfe7f0fce5.html +++ b/doc/html/dir_e8ed08f2d5f8ac3e3b5447bfe7f0fce5.html @@ -38,7 +38,7 @@ Logo -
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diff --git a/doc/html/dir_ee14773baee519b082f78b85b263aa48.html b/doc/html/dir_ee14773baee519b082f78b85b263aa48.html index b84d5c779..a9813652f 100644 --- a/doc/html/dir_ee14773baee519b082f78b85b263aa48.html +++ b/doc/html/dir_ee14773baee519b082f78b85b263aa48.html @@ -38,7 +38,7 @@ Logo -
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diff --git a/doc/html/dir_f54e10c7807847345da870f7da42cdf0.html b/doc/html/dir_f54e10c7807847345da870f7da42cdf0.html index d9afb901a..cb8b0421b 100644 --- a/doc/html/dir_f54e10c7807847345da870f7da42cdf0.html +++ b/doc/html/dir_f54e10c7807847345da870f7da42cdf0.html @@ -38,7 +38,7 @@ Logo -
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diff --git a/doc/html/dir_f93a58e1b1064abf3e9af98b74e2f5d5.html b/doc/html/dir_f93a58e1b1064abf3e9af98b74e2f5d5.html index e6fce5d5a..aa7652d9d 100644 --- a/doc/html/dir_f93a58e1b1064abf3e9af98b74e2f5d5.html +++ b/doc/html/dir_f93a58e1b1064abf3e9af98b74e2f5d5.html @@ -38,7 +38,7 @@ Logo -
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diff --git a/doc/html/dir_fceca22ca0920a3e9321d273c935ca85.html b/doc/html/dir_fceca22ca0920a3e9321d273c935ca85.html index 4fe1397af..815368ca7 100644 --- a/doc/html/dir_fceca22ca0920a3e9321d273c935ca85.html +++ b/doc/html/dir_fceca22ca0920a3e9321d273c935ca85.html @@ -38,7 +38,7 @@ Logo -
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diff --git a/doc/html/doxygen_crawl.html b/doc/html/doxygen_crawl.html index d3cce64c3..d63d00208 100644 --- a/doc/html/doxygen_crawl.html +++ b/doc/html/doxygen_crawl.html @@ -186,6 +186,8 @@ + + @@ -792,7 +794,9 @@ + + @@ -991,6 +995,7 @@ + @@ -1001,21 +1006,23 @@ + - + + @@ -1029,6 +1036,7 @@ + @@ -1041,6 +1049,7 @@ + @@ -1207,6 +1216,7 @@ + @@ -1225,7 +1235,7 @@ - + @@ -2021,6 +2031,7 @@ + @@ -2797,6 +2808,62 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + @@ -2806,13 +2873,15 @@ - - + + + + @@ -2841,58 +2910,44 @@ - + + - + + - - - - - - - - - - - - - - - - - - - - - - - + + + + - + + + + @@ -3004,7 +3059,9 @@ + + @@ -3019,7 +3076,6 @@ - @@ -3027,6 +3083,7 @@ + @@ -3053,6 +3110,7 @@ + @@ -3063,7 +3121,7 @@ - + @@ -3073,48 +3131,36 @@ - + + + - - + + + - - - - + - - - - - - - - - - - - - - - + + + - - - - + + + + @@ -3123,95 +3169,63 @@ + - + - + + - - - - - - - - - - - - - - - - - - - - - - - + + + + - - - - - - - - - - - - - - - - - - - - - - + + + + - + - - + + + + + @@ -3219,15 +3233,15 @@ - + + - @@ -3345,6 +3359,7 @@ + @@ -3360,7 +3375,6 @@ - @@ -3373,11 +3387,11 @@ + - @@ -3399,12 +3413,12 @@ + - diff --git a/doc/html/files.html b/doc/html/files.html index 81be75fa4..97509af7d 100644 --- a/doc/html/files.html +++ b/doc/html/files.html @@ -38,7 +38,7 @@ Logo -
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diff --git a/doc/html/functions.html b/doc/html/functions.html index ee65a3cbc..f7bf5712b 100644 --- a/doc/html/functions.html +++ b/doc/html/functions.html @@ -38,7 +38,7 @@ Logo -
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diff --git a/doc/html/functions_b.html b/doc/html/functions_b.html index 97069c4a7..ae51309c3 100644 --- a/doc/html/functions_b.html +++ b/doc/html/functions_b.html @@ -38,7 +38,7 @@ Logo -
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- b -

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Returns
Vector of UUIDs for each sub-triangle
-

Definition at line 5581 of file Context.cpp.

+

Definition at line 5648 of file Context.cpp.

@@ -2038,7 +2038,7 @@

Returns
Vector of UUIDs for each sub-triangle
-

Definition at line 5531 of file Context.cpp.

+

Definition at line 5598 of file Context.cpp.

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Returns
Object ID of new sphere object.
Note
Assumes a default color of green
-

Definition at line 4232 of file Context.cpp.

+

Definition at line 4284 of file Context.cpp.

@@ -2123,7 +2123,7 @@

Returns
Object ID of new sphere object.
-

Definition at line 4323 of file Context.cpp.

+

Definition at line 4375 of file Context.cpp.

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Returns
Object ID of new sphere object.
-

Definition at line 4238 of file Context.cpp.

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Definition at line 4290 of file Context.cpp.

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Returns
Object ID of new sphere object.
Note
Assumes a default color of green
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Definition at line 4220 of file Context.cpp.

+

Definition at line 4272 of file Context.cpp.

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Returns
Object ID of new sphere object.
-

Definition at line 4228 of file Context.cpp.

+

Definition at line 4280 of file Context.cpp.

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Returns
Object ID of new sphere object.
-

Definition at line 4224 of file Context.cpp.

+

Definition at line 4276 of file Context.cpp.

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Returns
Vector of UUIDs for each sub-patch
Note
Assumes default color of green
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Definition at line 5686 of file Context.cpp.

+

Definition at line 5753 of file Context.cpp.

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Returns
Vector of UUIDs for each sub-patch
-

Definition at line 5730 of file Context.cpp.

+

Definition at line 5797 of file Context.cpp.

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Returns
Vector of UUIDs for each sub-patch
-

Definition at line 5693 of file Context.cpp.

+

Definition at line 5760 of file Context.cpp.

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Returns
Object ID of new tile object.
Note
Assumes default color of green
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Definition at line 4460 of file Context.cpp.

+

Definition at line 4512 of file Context.cpp.

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Returns
Object ID of new tile object.
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Definition at line 4532 of file Context.cpp.

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Definition at line 4584 of file Context.cpp.

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Returns
Object ID of new tile object.
-

Definition at line 4467 of file Context.cpp.

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Definition at line 4519 of file Context.cpp.

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Returns
Vector of UUIDs for each sub-triangle
Note
Ndivs must be greater than 2.
-

Definition at line 5807 of file Context.cpp.

+

Definition at line 5874 of file Context.cpp.

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Returns
Vector of UUIDs for each sub-triangle
Note
Ndivs must be greater than 2.
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Definition at line 5914 of file Context.cpp.

+

Definition at line 5981 of file Context.cpp.

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Returns
Vector of UUIDs for each sub-triangle
Note
Ndivs must be greater than 2.
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Definition at line 5822 of file Context.cpp.

+

Definition at line 5889 of file Context.cpp.

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Returns
Object ID of new tube object.
Note
Ndivs must be greater than 2.
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Definition at line 4638 of file Context.cpp.

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Definition at line 4690 of file Context.cpp.

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Definition at line 4748 of file Context.cpp.

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Definition at line 4810 of file Context.cpp.

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Definition at line 4758 of file Context.cpp.

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Definition at line 4820 of file Context.cpp.

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Returns
Object ID of new tube object.
Note
Ndivs must be greater than 2.
-

Definition at line 4653 of file Context.cpp.

+

Definition at line 4705 of file Context.cpp.

diff --git a/doc/html/group__functions.html b/doc/html/group__functions.html index 5adc76add..275ae65eb 100644 --- a/doc/html/group__functions.html +++ b/doc/html/group__functions.html @@ -38,7 +38,7 @@ Logo -
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Definition at line 1922 of file global.cpp.

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Definition at line 1924 of file global.cpp.

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Definition at line 1901 of file global.cpp.

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Definition at line 1903 of file global.cpp.

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int2 vector into a 1D vector.

-

Definition at line 2006 of file global.cpp.

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Definition at line 2008 of file global.cpp.

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int3 vector into a 1D vector.

-

Definition at line 2027 of file global.cpp.

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Definition at line 2029 of file global.cpp.

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int4 vector into a 1D vector.

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Definition at line 2048 of file global.cpp.

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Definition at line 2050 of file global.cpp.

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vec2 vector into a 1D vector.

-

Definition at line 1943 of file global.cpp.

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Definition at line 1945 of file global.cpp.

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vec3 vector into a 1D vector.

-

Definition at line 1964 of file global.cpp.

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Definition at line 1966 of file global.cpp.

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vec4 vector into a 1D vector.

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Definition at line 1985 of file global.cpp.

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Definition at line 1987 of file global.cpp.

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Definition at line 1859 of file global.cpp.

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Definition at line 2140 of file global.cpp.

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Definition at line 2142 of file global.cpp.

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int2 vector into a 1D vector.

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Definition at line 2265 of file global.cpp.

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Definition at line 2267 of file global.cpp.

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int3 vector into a 1D vector.

-

Definition at line 2290 of file global.cpp.

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Definition at line 2292 of file global.cpp.

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int4 vector into a 1D vector.

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Definition at line 2315 of file global.cpp.

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Definition at line 2317 of file global.cpp.

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vec2 vector into a 1D vector.

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Definition at line 2190 of file global.cpp.

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vec3 vector into a 1D vector.

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Definition at line 2215 of file global.cpp.

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Definition at line 2217 of file global.cpp.

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vec4 vector into a 1D vector.

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Definition at line 2240 of file global.cpp.

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Definition at line 2242 of file global.cpp.

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Definition at line 2090 of file global.cpp.

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Definition at line 2340 of file global.cpp.

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Definition at line 2452 of file global.cpp.

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Definition at line 2423 of file global.cpp.

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Definition at line 2425 of file global.cpp.

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int2 vector into a 1D vector.

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Definition at line 2568 of file global.cpp.

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int3 vector into a 1D vector.

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Definition at line 2597 of file global.cpp.

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int4 vector into a 1D vector.

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Definition at line 2626 of file global.cpp.

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Definition at line 2628 of file global.cpp.

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vec2 vector into a 1D vector.

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Definition at line 2481 of file global.cpp.

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vec3 vector into a 1D vector.

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Definition at line 2510 of file global.cpp.

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vec4 vector into a 1D vector.

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Definition at line 2539 of file global.cpp.

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Definition at line 2541 of file global.cpp.

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Definition at line 2365 of file global.cpp.

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Definition at line 2367 of file global.cpp.

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Definition at line 2655 of file global.cpp.

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Definition at line 2657 of file global.cpp.

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Definition at line 2394 of file global.cpp.

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Definition at line 2396 of file global.cpp.

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Definition at line 2115 of file global.cpp.

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Definition at line 2117 of file global.cpp.

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Definition at line 1880 of file global.cpp.

+

Definition at line 1882 of file global.cpp.

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Returns
Interpolated (x,y,z) Cartesian point.
-

Definition at line 2684 of file global.cpp.

+

Definition at line 2686 of file global.cpp.

diff --git a/doc/html/group__primitives.html b/doc/html/group__primitives.html index 96aac825b..c1eceb107 100644 --- a/doc/html/group__primitives.html +++ b/doc/html/group__primitives.html @@ -38,7 +38,7 @@ Logo -
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Context

-

Definition at line 1207 of file Context.cpp.

+

Definition at line 1202 of file Context.cpp.

@@ -200,7 +200,7 @@

Returns
UUID of Patch
Note
Assumes that patch is horizontal.
-

Definition at line 1211 of file Context.cpp.

+

Definition at line 1206 of file Context.cpp.

@@ -240,7 +240,7 @@

Returns
UUID of Patch
Note
Assumes that patch is horizontal.
-

Definition at line 1215 of file Context.cpp.

+

Definition at line 1210 of file Context.cpp.

@@ -285,7 +285,7 @@

Returns
UUID of Patch
-

Definition at line 1252 of file Context.cpp.

+

Definition at line 1247 of file Context.cpp.

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Returns
UUID of Patch
-

Definition at line 1280 of file Context.cpp.

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Definition at line 1275 of file Context.cpp.

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Returns
UUID of Triangle
-

Definition at line 1323 of file Context.cpp.

+

Definition at line 1318 of file Context.cpp.

@@ -445,7 +445,7 @@

Returns
UUID of Triangle
Note
Assumes a default color of black.
-

Definition at line 1345 of file Context.cpp.

+

Definition at line 1340 of file Context.cpp.

@@ -490,7 +490,7 @@

Returns
UUID of Triangle
-

Definition at line 1331 of file Context.cpp.

+

Definition at line 1326 of file Context.cpp.

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Returns
UUID of Triangle
-

Definition at line 1327 of file Context.cpp.

+

Definition at line 1322 of file Context.cpp.

@@ -569,7 +569,7 @@

Returns
UUID of Voxel
Note
Assumes that voxel is horizontal.
-

Definition at line 1367 of file Context.cpp.

+

Definition at line 1362 of file Context.cpp.

@@ -609,7 +609,7 @@

Returns
UUID of Voxel
Note
Assumes a default color of black.
-

Definition at line 1371 of file Context.cpp.

+

Definition at line 1366 of file Context.cpp.

@@ -631,7 +631,7 @@

Context.

Note
This includes hidden primitives
-

Definition at line 1754 of file Context.cpp.

+

Definition at line 1749 of file Context.cpp.

diff --git a/doc/html/group__timeseries.html b/doc/html/group__timeseries.html index e90bc52bf..8ca00bf7b 100644 --- a/doc/html/group__timeseries.html +++ b/doc/html/group__timeseries.html @@ -38,7 +38,7 @@ Logo -
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Definition at line 1818 of file Context.cpp.

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Definition at line 1813 of file Context.cpp.

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Definition at line 2021 of file Context.cpp.

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Definition at line 2016 of file Context.cpp.

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Definition at line 2009 of file Context.cpp.

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Definition at line 2004 of file Context.cpp.

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Returns
Value of timeseries data point
-

Definition at line 1939 of file Context.cpp.

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Definition at line 1934 of file Context.cpp.

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Returns
Value of timeseries data point
-

Definition at line 1889 of file Context.cpp.

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Definition at line 1884 of file Context.cpp.

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Returns
Value of timeseries data point
-

Definition at line 1943 of file Context.cpp.

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Definition at line 1938 of file Context.cpp.

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Returns
Date of timeseries data point
-

Definition at line 1989 of file Context.cpp.

+

Definition at line 1984 of file Context.cpp.

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Returns
Time of timeseries data point
-

Definition at line 1953 of file Context.cpp.

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Definition at line 1948 of file Context.cpp.

@@ -431,7 +431,7 @@

Definition at line 1881 of file Context.cpp.

+

Definition at line 1876 of file Context.cpp.

diff --git a/doc/html/group__vectors.html b/doc/html/group__vectors.html index 255e9891a..9d96724ba 100644 --- a/doc/html/group__vectors.html +++ b/doc/html/group__vectors.html @@ -38,7 +38,7 @@ Logo -
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Definition at line 1307 of file helios_vector_types.h.

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Definition at line 1265 of file helios_vector_types.h.

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Definition at line 1238 of file helios_vector_types.h.

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Definition at line 1332 of file helios_vector_types.h.

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Definition at line 1130 of file helios_vector_types.h.

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Definition at line 1140 of file helios_vector_types.h.

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Definition at line 951 of file helios_vector_types.h.

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Definition at line 954 of file helios_vector_types.h.

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Definition at line 1424 of file helios_vector_types.h.

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Definition at line 1427 of file helios_vector_types.h.

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Definition at line 1442 of file helios_vector_types.h.

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Definition at line 1445 of file helios_vector_types.h.

@@ -681,7 +681,7 @@

Definition at line 432 of file helios_vector_types.h.

+

Definition at line 433 of file helios_vector_types.h.

diff --git a/doc/html/helios__vector__types_8h.html b/doc/html/helios__vector__types_8h.html index 506988b57..c71b2570c 100644 --- a/doc/html/helios__vector__types_8h.html +++ b/doc/html/helios__vector__types_8h.html @@ -38,7 +38,7 @@ Logo -
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@@ -400,7 +400,7 @@

Definition at line 597 of file helios_vector_types.h.

+

Definition at line 599 of file helios_vector_types.h.

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Definition at line 1536 of file helios_vector_types.h.

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Definition at line 1539 of file helios_vector_types.h.

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Definition at line 1546 of file helios_vector_types.h.

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Definition at line 587 of file helios_vector_types.h.

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Definition at line 592 of file helios_vector_types.h.

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Definition at line 594 of file helios_vector_types.h.

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Definition at line 760 of file helios_vector_types.h.

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Definition at line 765 of file helios_vector_types.h.

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Definition at line 480 of file helios_vector_types.h.

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Definition at line 797 of file helios_vector_types.h.

+

Definition at line 800 of file helios_vector_types.h.

@@ -995,7 +995,7 @@

Definition at line 472 of file helios_vector_types.h.

+

Definition at line 473 of file helios_vector_types.h.

@@ -1028,7 +1028,7 @@

Definition at line 639 of file helios_vector_types.h.

+

Definition at line 641 of file helios_vector_types.h.

@@ -1061,7 +1061,7 @@

Definition at line 809 of file helios_vector_types.h.

+

Definition at line 812 of file helios_vector_types.h.

diff --git a/doc/html/helios__vector__types_8h_source.html b/doc/html/helios__vector__types_8h_source.html index 21d0dfdbb..7df394c6a 100644 --- a/doc/html/helios__vector__types_8h_source.html +++ b/doc/html/helios__vector__types_8h_source.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
@@ -447,1205 +447,1208 @@
352 float y;
353
-
355 void normalize(){
+
355 vec2 normalize(){
356 float mag = sqrt( x*x + y*y );
357 x/=mag;
358 y/=mag;
-
359 }
-
-
360
-
362
-
-
365 [[nodiscard]] float magnitude() const{
-
366 return sqrtf( x*x + y*y );
-
367 }
-
-
368
-
370
-
371 vec2() : x(0), y(0) {}
-
372
-
-
374 explicit vec2( const std::vector<float> &v ){
-
375 if( v.size()!=2){
-
376 throw(std::runtime_error("ERROR: vector for initialization of vec2 must have length 2."));
-
377 }
-
378 x=v.at(0);
-
379 y=v.at(1);
-
380 }
-
-
382 explicit vec2( const float v[2] ) : x(v[0]), y(v[1]) {}
-
383
-
385 vec2( float v0, float v1 ) : x(v0), y(v1) {}
-
386
-
388 float operator*(const vec2& a) const;
-
390 vec2 operator+(const vec2& a) const;
-
392 vec2& operator+=(const vec2& a);
-
394 vec2& operator-=(const vec2& a);
-
396 vec2 operator-(const vec2& a) const;
-
398 vec2 operator*( float a) const;
-
400 vec2 operator/( float a) const;
-
402 vec2 operator+( float a) const;
-
404 vec2 operator-( float a) const;
-
406 bool operator==(const vec2& a) const;
-
408 bool operator!=(const vec2& a) const;
-
410 vec2 operator-() const;
-
411
-
-
413 friend std::ostream &operator<<(std::ostream &os, const helios::vec2 &vec) {
-
414 return os << "helios::vec2<" << vec.x << ", " << vec.y << ">";
-
415 }
-
-
416
-
417};
-
-
418
-
420vec2 operator*( float a, const vec2& v);
-
422vec2 operator+( float a, const vec2& v);
-
424vec2 operator-( float a, const vec2& v);
-
425
-
427
-
-
432inline vec2 make_vec2(float x, float y ){
-
433 return {x, y};
-
434}
-
-
435
-
-
436inline float vec2::operator*(const vec2& a) const{
-
437 return a.x*x+a.y*y;
-
438}
-
-
439
-
-
440inline vec2 vec2::operator+(const vec2& a) const{
-
441 return {a.x+x,a.y+y};
-
442}
-
-
443
-
-
444inline vec2& vec2::operator+=(const vec2& a){
-
445 this->x += a.x;
-
446 this->y += a.y;
-
447 return *this;
-
448}
-
-
449
-
-
450inline vec2& vec2::operator-=(const vec2& a){
-
451 this->x -= a.x;
-
452 this->y -= a.y;
-
453 return *this;
-
454}
-
-
455
-
-
456inline vec2 vec2::operator+(const float a) const {
-
457 return {a+x, a+y};
-
458}
-
-
459
-
-
460inline vec2 operator+(const float a, const vec2& v){
-
461 return {a+v.x, a+v.y};
-
462}
-
-
463
-
-
464inline vec2 vec2::operator-(const vec2& a) const{
-
465 return {x-a.x,y-a.y};
-
466}
-
-
467
-
-
468inline vec2 vec2::operator-(const float a) const {
-
469 return {x-a, y-a};
-
470}
-
-
471
-
-
472inline vec2 operator-(const float a, const vec2& v) {
-
473 return {a-v.x, a-v.y};
-
474}
-
-
475
-
-
476inline vec2 vec2::operator*(const float a) const{
-
477 return {x*a,y*a};
-
478}
-
-
479
-
-
480inline vec2 operator*(const float a, const vec2& v) {
-
481 return {a * v.x, a * v.y};
-
482}
-
-
483
-
-
484inline vec2 vec2::operator/(const float a) const{
-
485 return {x/a,y/a};
-
486}
-
-
487
-
-
488inline bool vec2::operator==(const vec2& a) const{
-
489 return x == a.x && y == a.y;
-
490}
-
-
491
-
-
492inline bool vec2::operator!=(const vec2& a) const{
-
493 return x != a.x || y != a.y;
-
494}
-
-
495
-
-
496inline vec2 vec2::operator-() const{
-
497 return {-x,-y};
-
498}
-
-
499
-
501
-
-
502struct vec3{
-
503public:
-
504
-
506 float x;
-
508 float y;
-
510 float z;
-
511
-
-
513 void normalize(){
-
514 float mag = sqrt( x*x + y*y + z*z );
-
515 x/=mag;
-
516 y/=mag;
-
517 z/=mag;
-
518 }
-
-
519
+
359 return {x,y};
+
360 }
+
+
361
+
363
+
+
366 [[nodiscard]] float magnitude() const{
+
367 return sqrtf( x*x + y*y );
+
368 }
+
+
369
+
371
+
372 vec2() : x(0), y(0) {}
+
373
+
+
375 explicit vec2( const std::vector<float> &v ){
+
376 if( v.size()!=2){
+
377 throw(std::runtime_error("ERROR: vector for initialization of vec2 must have length 2."));
+
378 }
+
379 x=v.at(0);
+
380 y=v.at(1);
+
381 }
+
+
383 explicit vec2( const float v[2] ) : x(v[0]), y(v[1]) {}
+
384
+
386 vec2( float v0, float v1 ) : x(v0), y(v1) {}
+
387
+
389 float operator*(const vec2& a) const;
+
391 vec2 operator+(const vec2& a) const;
+
393 vec2& operator+=(const vec2& a);
+
395 vec2& operator-=(const vec2& a);
+
397 vec2 operator-(const vec2& a) const;
+
399 vec2 operator*( float a) const;
+
401 vec2 operator/( float a) const;
+
403 vec2 operator+( float a) const;
+
405 vec2 operator-( float a) const;
+
407 bool operator==(const vec2& a) const;
+
409 bool operator!=(const vec2& a) const;
+
411 vec2 operator-() const;
+
412
+
+
414 friend std::ostream &operator<<(std::ostream &os, const helios::vec2 &vec) {
+
415 return os << "helios::vec2<" << vec.x << ", " << vec.y << ">";
+
416 }
+
+
417
+
418};
+ +
419
+
421vec2 operator*( float a, const vec2& v);
+
423vec2 operator+( float a, const vec2& v);
+
425vec2 operator-( float a, const vec2& v);
+
426
+
428
+
+
433inline vec2 make_vec2(float x, float y ){
+
434 return {x, y};
+
435}
+
+
436
+
+
437inline float vec2::operator*(const vec2& a) const{
+
438 return a.x*x+a.y*y;
+
439}
+
+
440
+
+
441inline vec2 vec2::operator+(const vec2& a) const{
+
442 return {a.x+x,a.y+y};
+
443}
+
+
444
+
+
445inline vec2& vec2::operator+=(const vec2& a){
+
446 this->x += a.x;
+
447 this->y += a.y;
+
448 return *this;
+
449}
+
+
450
+
+
451inline vec2& vec2::operator-=(const vec2& a){
+
452 this->x -= a.x;
+
453 this->y -= a.y;
+
454 return *this;
+
455}
+
+
456
+
+
457inline vec2 vec2::operator+(const float a) const {
+
458 return {a+x, a+y};
+
459}
+
+
460
+
+
461inline vec2 operator+(const float a, const vec2& v){
+
462 return {a+v.x, a+v.y};
+
463}
+
+
464
+
+
465inline vec2 vec2::operator-(const vec2& a) const{
+
466 return {x-a.x,y-a.y};
+
467}
+
+
468
+
+
469inline vec2 vec2::operator-(const float a) const {
+
470 return {x-a, y-a};
+
471}
+
+
472
+
+
473inline vec2 operator-(const float a, const vec2& v) {
+
474 return {a-v.x, a-v.y};
+
475}
+
+
476
+
+
477inline vec2 vec2::operator*(const float a) const{
+
478 return {x*a,y*a};
+
479}
+
+
480
+
+
481inline vec2 operator*(const float a, const vec2& v) {
+
482 return {a * v.x, a * v.y};
+
483}
+
+
484
+
+
485inline vec2 vec2::operator/(const float a) const{
+
486 return {x/a,y/a};
+
487}
+
+
488
+
+
489inline bool vec2::operator==(const vec2& a) const{
+
490 return x == a.x && y == a.y;
+
491}
+
+
492
+
+
493inline bool vec2::operator!=(const vec2& a) const{
+
494 return x != a.x || y != a.y;
+
495}
+
+
496
+
+
497inline vec2 vec2::operator-() const{
+
498 return {-x,-y};
+
499}
+
+
500
+
502
+
+
503struct vec3{
+
504public:
+
505
+
507 float x;
+
509 float y;
+
511 float z;
+
512
+
+
514 vec3 normalize(){
+
515 float mag = sqrt( x*x + y*y + z*z );
+
516 x/=mag;
+
517 y/=mag;
+
518 z/=mag;
+
519 return {x,y,z};
+
520 }
+
521
-
-
524 [[nodiscard]] float magnitude() const{
-
525 return sqrtf( x*x + y*y + z*z );
-
526 }
+
523
+
+
526 [[nodiscard]] float magnitude() const{
+
527 return sqrtf( x*x + y*y + z*z );
+
528 }
-
527
529
-
530 vec3() : x(0), y(0), z(0) {}
531
-
-
533 explicit vec3( const std::vector<float> &v ){
-
534 if( v.size()!=3){
-
535 throw(std::runtime_error("ERROR: vector for initialization of vec3 must have length 3."));
-
536 }
-
537 x=v[0];
-
538 y=v[1];
-
539 z=v[2];
-
540 }
-
-
542 explicit vec3( const float v[3] ) : x(v[0]), y(v[1]), z(v[2]) {}
-
543
-
545 vec3( float v0, float v1, float v2 ) : x(v0), y(v1), z(v2) {}
-
546
-
548 float operator*(const vec3& a) const;
-
550 vec3 operator+(const vec3& a) const;
-
552 vec3& operator+=(const vec3& a);
-
554 vec3& operator-=(const vec3& a);
-
556 vec3 operator-(const vec3& a) const;
-
558 vec3 operator*( float a) const;
-
560 vec3 operator/( float a) const;
-
562 vec3 operator+( float a) const;
-
564 vec3 operator-( float a) const;
-
566 bool operator==(const vec3& a) const;
-
568 bool operator!=(const vec3& a) const;
-
570 vec3 operator-() const;
-
571
-
-
573 friend std::ostream &operator<<(std::ostream &os, const helios::vec3 &vec) {
-
574 return os << "helios::vec3<" << vec.x << ", " << vec.y << ", " << vec.z << ">";
-
575 }
-
-
576
-
577};
+
532 vec3() : x(0), y(0), z(0) {}
+
533
+
+
535 explicit vec3( const std::vector<float> &v ){
+
536 if( v.size()!=3){
+
537 throw(std::runtime_error("ERROR: vector for initialization of vec3 must have length 3."));
+
538 }
+
539 x=v[0];
+
540 y=v[1];
+
541 z=v[2];
+
542 }
+
+
544 explicit vec3( const float v[3] ) : x(v[0]), y(v[1]), z(v[2]) {}
+
545
+
547 vec3( float v0, float v1, float v2 ) : x(v0), y(v1), z(v2) {}
+
548
+
550 float operator*(const vec3& a) const;
+
552 vec3 operator+(const vec3& a) const;
+
554 vec3& operator+=(const vec3& a);
+
556 vec3& operator-=(const vec3& a);
+
558 vec3 operator-(const vec3& a) const;
+
560 vec3 operator*( float a) const;
+
562 vec3 operator/( float a) const;
+
564 vec3 operator+( float a) const;
+
566 vec3 operator-( float a) const;
+
568 bool operator==(const vec3& a) const;
+
570 bool operator!=(const vec3& a) const;
+
572 vec3 operator-() const;
+
573
+
+
575 friend std::ostream &operator<<(std::ostream &os, const helios::vec3 &vec) {
+
576 return os << "helios::vec3<" << vec.x << ", " << vec.y << ", " << vec.z << ">";
+
577 }
578
-
580vec3 operator*( float a, const vec3& v);
-
582vec3 operator+( float a, const vec3& v);
-
584vec3 operator-( float a, const vec3& v);
-
585
-
-
587inline vec3 make_vec3(float x, float y, float z ){
-
588 return {x, y, z};
-
589}
-
-
590
-
-
592inline vec3 make_vec3( float X[3] ){
-
593 return {X[0],X[1],X[2]};
-
594}
-
-
595
-
-
597inline vec3 cross(const vec3 &a, const vec3 &b ){
-
598 return {a.y*b.z - b.y*a.z,b.x*a.z - a.x*b.z,a.x*b.y - b.x*a.y };
-
599}
-
-
600
-
-
601inline float vec3::operator*(const vec3& a) const{
-
602 return a.x*x+a.y*y+a.z*z;
-
603}
-
-
604
-
-
605inline vec3 vec3::operator+(const vec3& a) const{
-
606 return {a.x+x,a.y+y,a.z+z};
-
607}
-
-
608
-
-
609inline vec3& vec3::operator+=(const vec3& a){
-
610 this->x += a.x;
-
611 this->y += a.y;
-
612 this->z += a.z;
-
613 return *this;
-
614}
-
-
615
-
-
616inline vec3& vec3::operator-=(const vec3& a){
-
617 this->x -= a.x;
-
618 this->y -= a.y;
-
619 this->z -= a.z;
-
620 return *this;
-
621}
-
-
622
-
-
623inline vec3 vec3::operator+(const float a) const{
-
624 return { x+a, y+a, z+a };
-
625}
-
-
626
-
-
627inline vec3 operator+(const float a, const vec3& v) {
-
628 return {a+v.x, a+v.y, a+v.z};
-
629}
-
-
630
-
-
631inline vec3 vec3::operator-(const vec3& a) const{
-
632 return {x-a.x,y-a.y,z-a.z};
-
633}
-
-
634
-
-
635inline vec3 vec3::operator-(const float a) const{
-
636 return { x-a, y-a, z-a };
-
637}
-
-
638
-
-
639inline vec3 operator-(const float a, const vec3& v) {
-
640 return {a-v.x, a-v.y, a-v.z};
-
641}
-
-
642
-
-
643inline vec3 vec3::operator*(const float a) const{
-
644 return {x*a,y*a,z*a};
-
645}
-
-
646
-
-
647inline vec3 operator*(const float a, const vec3& v) {
-
648 return {a * v.x, a * v.y, a * v.z};
-
649}
-
-
650
-
-
651inline vec3 vec3::operator/(const float a) const{
-
652 return {x/a,y/a,z/a};
-
653}
-
-
654
-
-
655inline bool vec3::operator==(const vec3& a) const{
-
656 return x == a.x && y == a.y && z == a.z;
-
657}
-
-
658
-
-
659inline bool vec3::operator!=(const vec3& a) const{
-
660 return x != a.x || y != a.y || z != a.z;
-
661}
-
-
662
-
-
663inline vec3 vec3::operator-() const{
-
664 return {-x,-y,-z};
-
665}
-
-
666
+
579};
+
+
580
+
582vec3 operator*( float a, const vec3& v);
+
584vec3 operator+( float a, const vec3& v);
+
586vec3 operator-( float a, const vec3& v);
+
587
+
+
589inline vec3 make_vec3(float x, float y, float z ){
+
590 return {x, y, z};
+
591}
+
+
592
+
+
594inline vec3 make_vec3( float X[3] ){
+
595 return {X[0],X[1],X[2]};
+
596}
+
+
597
+
+
599inline vec3 cross(const vec3 &a, const vec3 &b ){
+
600 return {a.y*b.z - b.y*a.z,b.x*a.z - a.x*b.z,a.x*b.y - b.x*a.y };
+
601}
+
+
602
+
+
603inline float vec3::operator*(const vec3& a) const{
+
604 return a.x*x+a.y*y+a.z*z;
+
605}
+
+
606
+
+
607inline vec3 vec3::operator+(const vec3& a) const{
+
608 return {a.x+x,a.y+y,a.z+z};
+
609}
+
+
610
+
+
611inline vec3& vec3::operator+=(const vec3& a){
+
612 this->x += a.x;
+
613 this->y += a.y;
+
614 this->z += a.z;
+
615 return *this;
+
616}
+
+
617
+
+
618inline vec3& vec3::operator-=(const vec3& a){
+
619 this->x -= a.x;
+
620 this->y -= a.y;
+
621 this->z -= a.z;
+
622 return *this;
+
623}
+
+
624
+
+
625inline vec3 vec3::operator+(const float a) const{
+
626 return { x+a, y+a, z+a };
+
627}
+
+
628
+
+
629inline vec3 operator+(const float a, const vec3& v) {
+
630 return {a+v.x, a+v.y, a+v.z};
+
631}
+
+
632
+
+
633inline vec3 vec3::operator-(const vec3& a) const{
+
634 return {x-a.x,y-a.y,z-a.z};
+
635}
+
+
636
+
+
637inline vec3 vec3::operator-(const float a) const{
+
638 return { x-a, y-a, z-a };
+
639}
+
+
640
+
+
641inline vec3 operator-(const float a, const vec3& v) {
+
642 return {a-v.x, a-v.y, a-v.z};
+
643}
+
+
644
+
+
645inline vec3 vec3::operator*(const float a) const{
+
646 return {x*a,y*a,z*a};
+
647}
+
+
648
+
+
649inline vec3 operator*(const float a, const vec3& v) {
+
650 return {a * v.x, a * v.y, a * v.z};
+
651}
+
+
652
+
+
653inline vec3 vec3::operator/(const float a) const{
+
654 return {x/a,y/a,z/a};
+
655}
+
+
656
+
+
657inline bool vec3::operator==(const vec3& a) const{
+
658 return x == a.x && y == a.y && z == a.z;
+
659}
+
+
660
+
+
661inline bool vec3::operator!=(const vec3& a) const{
+
662 return x != a.x || y != a.y || z != a.z;
+
663}
+
+
664
+
+
665inline vec3 vec3::operator-() const{
+
666 return {-x,-y,-z};
+
667}
+
668
-
-
671struct vec4{
-
672public:
-
673
-
675 float x;
-
677 float y;
-
679 float z;
-
681 float w;
-
682
-
-
684 void normalize(){
-
685 float mag = sqrt( x*x + y*y + z*z + w*w );
-
686 x/=mag;
-
687 y/=mag;
-
688 z/=mag;
-
689 w/=mag;
-
690 }
-
-
691
-
693
-
-
696 [[nodiscard]] float magnitude() const{
-
697 return sqrt( x*x + y*y + z*z + w*w );
-
698 }
-
-
699
-
701
-
702 vec4() : x(0), y(0), z(0), w(0) {}
-
703
-
-
705 explicit vec4( const std::vector<float> &v ){
-
706 if( v.size()!=4){
-
707 throw(std::runtime_error("ERROR: vector for initialization of vec4 must have length 4."));
-
708 }
-
709 x=v[0];
-
710 y=v[1];
-
711 z=v[2];
-
712 w=v[3];
-
713 }
-
-
715 explicit vec4( const float v[4] ) : x(v[0]), y(v[1]), z(v[2]), w(v[3]) {}
-
716
-
718 vec4( float v0, float v1, float v2, float v3 ) : x(v0), y(v1), z(v2), w(v3) {}
+
670
+
+
673struct vec4{
+
674public:
+
675
+
677 float x;
+
679 float y;
+
681 float z;
+
683 float w;
+
684
+
+
686 vec4 normalize(){
+
687 float mag = sqrt( x*x + y*y + z*z + w*w );
+
688 x/=mag;
+
689 y/=mag;
+
690 z/=mag;
+
691 w/=mag;
+
692 return {x,y,z,w};
+
693 }
+
+
694
+
696
+
+
699 [[nodiscard]] float magnitude() const{
+
700 return sqrt( x*x + y*y + z*z + w*w );
+
701 }
+
+
702
+
704
+
705 vec4() : x(0), y(0), z(0), w(0) {}
+
706
+
+
708 explicit vec4( const std::vector<float> &v ){
+
709 if( v.size()!=4){
+
710 throw(std::runtime_error("ERROR: vector for initialization of vec4 must have length 4."));
+
711 }
+
712 x=v[0];
+
713 y=v[1];
+
714 z=v[2];
+
715 w=v[3];
+
716 }
+
+
718 explicit vec4( const float v[4] ) : x(v[0]), y(v[1]), z(v[2]), w(v[3]) {}
719
-
721 float operator*(const vec4& a) const;
-
723 vec4 operator+(const vec4& a) const;
-
725 vec4& operator+=(const vec4& a);
-
727 vec4& operator-=(const vec4& a);
-
729 vec4 operator-(const vec4& a) const;
-
731 vec4 operator*( float a) const;
-
733 vec4 operator/( float a) const;
-
735 vec4 operator+( float a) const;
-
737 vec4 operator-( float a) const;
-
739 bool operator==(const vec4& a) const;
-
741 bool operator!=(const vec4& a) const;
-
743 vec4 operator-() const;
-
744
-
-
746 friend std::ostream &operator<<(std::ostream &os, const helios::vec4 &vec) {
-
747 return os << "helios::vec4<" << vec.x << ", " << vec.y << ", " << vec.z << ", " << vec.w << ">";
-
748 }
-
-
749
-
750};
-
-
751
-
753vec4 operator*( float a, const vec4& v);
-
755vec4 operator+( float a, const vec4& v);
-
757vec4 operator-( float a, const vec4& v);
-
758
-
-
760 inline vec4 make_vec4( float x, float y, float z, float w ){
-
761 return {x, y, z, w};
-
762}
-
-
763
-
-
765inline vec4 make_vec4( float X[4] ){
-
766 return {X[0],X[1],X[2],X[3]};
-
767}
-
-
768
-
-
769inline float vec4::operator*(const vec4& a) const{
-
770 return a.x*x+a.y*y+a.z*z+a.w*w;
-
771}
-
-
772
-
-
773inline vec4 vec4::operator+(const vec4& a) const{
-
774 return {a.x+x,a.y+y,a.z+z,a.w+w};
-
775}
-
-
776
-
-
777inline vec4& vec4::operator+=(const vec4& a){
-
778 this->x += a.x;
-
779 this->y += a.y;
-
780 this->z += a.z;
-
781 this->w += a.w;
-
782 return *this;
-
783 }
-
-
784
-
-
785inline vec4& vec4::operator-=(const vec4& a){
-
786 this->x -= a.x;
-
787 this->y -= a.y;
-
788 this->z -= a.z;
-
789 this->w -= a.w;
-
790 return *this;
-
791 }
-
-
792
-
-
793inline vec4 vec4::operator+(const float a) const{
-
794 return { x+a, y+a, z+a, w+a };
-
795}
-
-
796
-
-
797inline vec4 operator+(const float a, const vec4& v) {
-
798 return {a+v.x, a+v.y, a+v.z, a+v.w};
-
799}
-
-
800
-
-
801inline vec4 vec4::operator-(const vec4& a) const{
-
802 return {x-a.x,y-a.y,z-a.z,w-a.w};
-
803}
-
-
804
-
-
805inline vec4 vec4::operator-(const float a) const{
-
806 return { x-a, y-a, z-a, w-a };
-
807}
-
-
808
-
-
809inline vec4 operator-(const float a, const vec4& v) {
-
810 return {a-v.x, a-v.y, a-v.z, a-v.w};
-
811}
-
-
812
-
-
813inline vec4 vec4::operator*(const float a) const{
-
814 return {x*a,y*a,z*a,w*a};
-
815}
-
-
816
-
-
817inline vec4 operator*(const float a, const vec4& v) {
-
818 return {a * v.x, a * v.y, a * v.z, a * v.w};
-
819}
-
-
820
-
-
821inline vec4 vec4::operator/(const float a) const{
-
822 return {x/a,y/a,z/a,w/a};
-
823}
-
-
824
-
-
825inline bool vec4::operator==(const vec4& a) const{
-
826 return x == a.x && y == a.y && z == a.z && w == a.w;
-
827}
-
-
828
-
-
829inline bool vec4::operator!=(const vec4& a) const{
-
830 return x != a.x || y != a.y || z != a.z || w != a.w;
-
831}
-
-
832
-
-
833inline vec4 vec4::operator-() const{
-
834 return {-x,-y,-z, -w};
-
835}
-
-
836
-
838
-
-
841struct RGBcolor{
-
842public:
-
843
-
845
-
846 float r;
+
721 vec4( float v0, float v1, float v2, float v3 ) : x(v0), y(v1), z(v2), w(v3) {}
+
722
+
724 float operator*(const vec4& a) const;
+
726 vec4 operator+(const vec4& a) const;
+
728 vec4& operator+=(const vec4& a);
+
730 vec4& operator-=(const vec4& a);
+
732 vec4 operator-(const vec4& a) const;
+
734 vec4 operator*( float a) const;
+
736 vec4 operator/( float a) const;
+
738 vec4 operator+( float a) const;
+
740 vec4 operator-( float a) const;
+
742 bool operator==(const vec4& a) const;
+
744 bool operator!=(const vec4& a) const;
+
746 vec4 operator-() const;
+
747
+
+
749 friend std::ostream &operator<<(std::ostream &os, const helios::vec4 &vec) {
+
750 return os << "helios::vec4<" << vec.x << ", " << vec.y << ", " << vec.z << ", " << vec.w << ">";
+
751 }
+
+
752
+
753};
+
+
754
+
756vec4 operator*( float a, const vec4& v);
+
758vec4 operator+( float a, const vec4& v);
+
760vec4 operator-( float a, const vec4& v);
+
761
+
+
763 inline vec4 make_vec4( float x, float y, float z, float w ){
+
764 return {x, y, z, w};
+
765}
+
+
766
+
+
768inline vec4 make_vec4( float X[4] ){
+
769 return {X[0],X[1],X[2],X[3]};
+
770}
+
+
771
+
+
772inline float vec4::operator*(const vec4& a) const{
+
773 return a.x*x+a.y*y+a.z*z+a.w*w;
+
774}
+
+
775
+
+
776inline vec4 vec4::operator+(const vec4& a) const{
+
777 return {a.x+x,a.y+y,a.z+z,a.w+w};
+
778}
+
+
779
+
+
780inline vec4& vec4::operator+=(const vec4& a){
+
781 this->x += a.x;
+
782 this->y += a.y;
+
783 this->z += a.z;
+
784 this->w += a.w;
+
785 return *this;
+
786 }
+
+
787
+
+
788inline vec4& vec4::operator-=(const vec4& a){
+
789 this->x -= a.x;
+
790 this->y -= a.y;
+
791 this->z -= a.z;
+
792 this->w -= a.w;
+
793 return *this;
+
794 }
+
+
795
+
+
796inline vec4 vec4::operator+(const float a) const{
+
797 return { x+a, y+a, z+a, w+a };
+
798}
+
+
799
+
+
800inline vec4 operator+(const float a, const vec4& v) {
+
801 return {a+v.x, a+v.y, a+v.z, a+v.w};
+
802}
+
+
803
+
+
804inline vec4 vec4::operator-(const vec4& a) const{
+
805 return {x-a.x,y-a.y,z-a.z,w-a.w};
+
806}
+
+
807
+
+
808inline vec4 vec4::operator-(const float a) const{
+
809 return { x-a, y-a, z-a, w-a };
+
810}
+
+
811
+
+
812inline vec4 operator-(const float a, const vec4& v) {
+
813 return {a-v.x, a-v.y, a-v.z, a-v.w};
+
814}
+
+
815
+
+
816inline vec4 vec4::operator*(const float a) const{
+
817 return {x*a,y*a,z*a,w*a};
+
818}
+
+
819
+
+
820inline vec4 operator*(const float a, const vec4& v) {
+
821 return {a * v.x, a * v.y, a * v.z, a * v.w};
+
822}
+
+
823
+
+
824inline vec4 vec4::operator/(const float a) const{
+
825 return {x/a,y/a,z/a,w/a};
+
826}
+
+
827
+
+
828inline bool vec4::operator==(const vec4& a) const{
+
829 return x == a.x && y == a.y && z == a.z && w == a.w;
+
830}
+
+
831
+
+
832inline bool vec4::operator!=(const vec4& a) const{
+
833 return x != a.x || y != a.y || z != a.z || w != a.w;
+
834}
+
+
835
+
+
836inline vec4 vec4::operator-() const{
+
837 return {-x,-y,-z, -w};
+
838}
+
+
839
+
841
+
+
844struct RGBcolor{
+
845public:
+
846
848
-
849 float g;
+
849 float r;
851
-
852 float b;
-
853
-
855 RGBcolor() : r(0), g(0), b(0) {}
+
852 float g;
+
854
+
855 float b;
856
-
858
-
-
864 RGBcolor( float r, float g, float b ){
-
865 this->r=clamp(r);
-
866 this->g=clamp(g);
-
867 this->b=clamp(b);
-
868 }
-
-
870
-
-
874 explicit RGBcolor( const float C[3] ){
-
875 r=clamp(C[0]);
-
876 g=clamp(C[1]);
-
877 b=clamp(C[2]);
-
878 }
-
-
880
-
-
884 explicit RGBcolor( const std::vector<float> &C ){
-
885 if( C.size()!=3 ){
-
886 throw(std::runtime_error("ERROR: cannot initialize RGBcolor using supplied vector - size should be 3."));
-
887 }
-
888 r=clamp(C[0]);
-
889 g=clamp(C[1]);
-
890 b=clamp(C[2]);
-
891 }
-
-
893
-
-
897 explicit RGBcolor(const vec3 &C ){
-
898 r=clamp(C.x);
-
899 g=clamp(C.y);
-
900 b=clamp(C.z);
-
901 }
-
-
902
-
904
-
-
907 void scale( float scale_factor ){
-
908 if(scale_factor < 0 ){
-
909 throw(std::runtime_error("ERROR (RGBcolor::scale): cannot scale RGBcolor by negative factor."));
-
910 }
-
911 r*=scale_factor;
-
912 g*=scale_factor;
-
913 b*=scale_factor;
-
914 }
-
-
915
-
-
917 friend std::ostream &operator<<(std::ostream &os, const helios::RGBcolor &c) {
-
918 return os << "helios::RGBcolor<" << c.r << ", " << c.g << ", " << c.b << ">";
-
919 }
-
-
920
-
922 bool operator==( const RGBcolor &c ) const;
-
924 bool operator!=( const RGBcolor &c ) const;
-
925
-
926private:
+
858 RGBcolor() : r(0), g(0), b(0) {}
+
859
+
861
+
+
867 RGBcolor( float r, float g, float b ){
+
868 this->r=clamp(r);
+
869 this->g=clamp(g);
+
870 this->b=clamp(b);
+
871 }
+
+
873
+
+
877 explicit RGBcolor( const float C[3] ){
+
878 r=clamp(C[0]);
+
879 g=clamp(C[1]);
+
880 b=clamp(C[2]);
+
881 }
+
+
883
+
+
887 explicit RGBcolor( const std::vector<float> &C ){
+
888 if( C.size()!=3 ){
+
889 throw(std::runtime_error("ERROR: cannot initialize RGBcolor using supplied vector - size should be 3."));
+
890 }
+
891 r=clamp(C[0]);
+
892 g=clamp(C[1]);
+
893 b=clamp(C[2]);
+
894 }
+
+
896
+
+
900 explicit RGBcolor(const vec3 &C ){
+
901 r=clamp(C.x);
+
902 g=clamp(C.y);
+
903 b=clamp(C.z);
+
904 }
+
+
905
+
907
+
+
910 void scale( float scale_factor ){
+
911 if(scale_factor < 0 ){
+
912 throw(std::runtime_error("ERROR (RGBcolor::scale): cannot scale RGBcolor by negative factor."));
+
913 }
+
914 r*=scale_factor;
+
915 g*=scale_factor;
+
916 b*=scale_factor;
+
917 }
+
+
918
+
+
920 friend std::ostream &operator<<(std::ostream &os, const helios::RGBcolor &c) {
+
921 return os << "helios::RGBcolor<" << c.r << ", " << c.g << ", " << c.b << ">";
+
922 }
+
+
923
+
925 bool operator==( const RGBcolor &c ) const;
+
927 bool operator!=( const RGBcolor &c ) const;
928
-
932 static float clamp( float value ){
-
933 if( value<0.f ){
-
934 return 0.f;
-
935 }else if( value>1.f ){
-
936 return 1.f;
-
937 }else{
-
938 return value;
-
939 }
-
940 }
-
941
-
942};
-
-
943
-
945
-
-
951inline RGBcolor make_RGBcolor( float r, float g, float b ){
-
952 return {r,g,b};
-
953}
-
-
954
-
956
-
961RGBcolor blend(const RGBcolor &color0_RGB, const RGBcolor &color1_RGB, float weight_RGB );
-
962
-
-
963inline bool RGBcolor::operator==( const RGBcolor &c ) const{
-
964 return c.r==r && c.g==g && c.b==b;
-
965}
-
-
966
-
-
967inline bool RGBcolor::operator!=( const RGBcolor &c ) const{
-
968 return c.r!=r || c.g!=g || c.b!=b;
-
969}
-
-
970
-
972namespace RGB{
+
929private:
+
931
+
935 static float clamp( float value ){
+
936 if( value<0.f ){
+
937 return 0.f;
+
938 }else if( value>1.f ){
+
939 return 1.f;
+
940 }else{
+
941 return value;
+
942 }
+
943 }
+
944
+
945};
+
+
946
+
948
+
+
954inline RGBcolor make_RGBcolor( float r, float g, float b ){
+
955 return {r,g,b};
+
956}
+
+
957
+
959
+
964RGBcolor blend(const RGBcolor &color0_RGB, const RGBcolor &color1_RGB, float weight_RGB );
+
965
+
+
966inline bool RGBcolor::operator==( const RGBcolor &c ) const{
+
967 return c.r==r && c.g==g && c.b==b;
+
968}
+
+
969
+
+
970inline bool RGBcolor::operator!=( const RGBcolor &c ) const{
+
971 return c.r!=r || c.g!=g || c.b!=b;
+
972}
+
973
-
975 extern RGBcolor red;
-
977 extern RGBcolor blue;
-
979 extern RGBcolor green;
-
981 extern RGBcolor cyan;
-
983 extern RGBcolor magenta;
-
985 extern RGBcolor yellow;
-
987 extern RGBcolor orange;
-
989 extern RGBcolor violet;
-
991 extern RGBcolor black;
-
993 extern RGBcolor white;
-
995 extern RGBcolor lime;
-
997 extern RGBcolor silver;
-
999 extern RGBcolor gray;
-
1001 extern RGBcolor navy;
-
1003 extern RGBcolor brown;
-
1005 extern RGBcolor khaki;
-
1007 extern RGBcolor greenyellow;
-
1009 extern RGBcolor forestgreen;
-
1011 extern RGBcolor yellowgreen;
-
1013 extern RGBcolor goldenrod;
-
1014
-
1015}
-
1016
-
1018
-
-
1021struct RGBAcolor{
-
1022public:
-
1023
-
1025
-
1026 float r;
+
975namespace RGB{
+
976
+
978 extern RGBcolor red;
+
980 extern RGBcolor blue;
+
982 extern RGBcolor green;
+
984 extern RGBcolor cyan;
+
986 extern RGBcolor magenta;
+
988 extern RGBcolor yellow;
+
990 extern RGBcolor orange;
+
992 extern RGBcolor violet;
+
994 extern RGBcolor black;
+
996 extern RGBcolor white;
+
998 extern RGBcolor lime;
+
1000 extern RGBcolor silver;
+
1002 extern RGBcolor gray;
+
1004 extern RGBcolor navy;
+
1006 extern RGBcolor brown;
+
1008 extern RGBcolor khaki;
+
1010 extern RGBcolor greenyellow;
+
1012 extern RGBcolor forestgreen;
+
1014 extern RGBcolor yellowgreen;
+
1016 extern RGBcolor goldenrod;
+
1017
+
1018}
+
1019
+
1021
+
+
1024struct RGBAcolor{
+
1025public:
+
1026
1028
-
1029 float g;
+
1029 float r;
1031
-
1032 float b;
+
1032 float g;
1034
-
1035 float a;
-
1036
-
1038 RGBAcolor() : r(0), g(0), b(0), a(1) {}
+
1035 float b;
+
1037
+
1038 float a;
1039
-
1041
-
-
1048 RGBAcolor( float r, float g, float b, float a ){
-
1049 this->r=clamp(r);
-
1050 this->g=clamp(g);
-
1051 this->b=clamp(b);
-
1052 this->a=clamp(a);
-
1053 }
-
-
1055
-
-
1059 explicit RGBAcolor( const float C[4] ){
-
1060 r=clamp(C[0]);
-
1061 g=clamp(C[1]);
-
1062 b=clamp(C[2]);
-
1063 a=clamp(C[3]);
-
1064 }
-
-
1066
-
-
1070 explicit RGBAcolor( const std::vector<float> &C ){
-
1071 if( C.size()!=4 ){
-
1072 throw(std::runtime_error("ERROR: cannot initialize RGBAcolor using supplied vector - size should be 4."));
-
1073 }
-
1074 r=clamp(C[0]);
-
1075 g=clamp(C[1]);
-
1076 b=clamp(C[2]);
-
1077 a=clamp(C[3]);
-
1078 }
-
-
1079
-
1081
-
-
1084 void scale( float scale_factor ){
-
1085 if(scale_factor < 0 ){
-
1086 throw(std::runtime_error("ERROR (RGBAcolor::scale): cannot scale RGBAcolor by negative factor."));
-
1087 }
-
1088 r*=scale_factor;
-
1089 g*=scale_factor;
-
1090 b*=scale_factor;
-
1091 a*=scale_factor;
-
1092 }
-
-
1093
-
-
1095 friend std::ostream &operator<<(std::ostream &os, const helios::RGBAcolor &c) {
-
1096 return os << "helios::RGBAcolor<" << c.r << ", " << c.g << ", " << c.b << ", " << c.a << ">";
-
1097 }
-
-
1098
-
1100 bool operator==( const helios::RGBAcolor &c ) const;
-
1102 bool operator!=( const helios::RGBAcolor &c ) const;
-
1103
-
1104private:
+
1041 RGBAcolor() : r(0), g(0), b(0), a(1) {}
+
1042
+
1044
+
+
1051 RGBAcolor( float r, float g, float b, float a ){
+
1052 this->r=clamp(r);
+
1053 this->g=clamp(g);
+
1054 this->b=clamp(b);
+
1055 this->a=clamp(a);
+
1056 }
+
+
1058
+
+
1062 explicit RGBAcolor( const float C[4] ){
+
1063 r=clamp(C[0]);
+
1064 g=clamp(C[1]);
+
1065 b=clamp(C[2]);
+
1066 a=clamp(C[3]);
+
1067 }
+
+
1069
+
+
1073 explicit RGBAcolor( const std::vector<float> &C ){
+
1074 if( C.size()!=4 ){
+
1075 throw(std::runtime_error("ERROR: cannot initialize RGBAcolor using supplied vector - size should be 4."));
+
1076 }
+
1077 r=clamp(C[0]);
+
1078 g=clamp(C[1]);
+
1079 b=clamp(C[2]);
+
1080 a=clamp(C[3]);
+
1081 }
+
+
1082
+
1084
+
+
1087 void scale( float scale_factor ){
+
1088 if(scale_factor < 0 ){
+
1089 throw(std::runtime_error("ERROR (RGBAcolor::scale): cannot scale RGBAcolor by negative factor."));
+
1090 }
+
1091 r*=scale_factor;
+
1092 g*=scale_factor;
+
1093 b*=scale_factor;
+
1094 a*=scale_factor;
+
1095 }
+
+
1096
+
+
1098 friend std::ostream &operator<<(std::ostream &os, const helios::RGBAcolor &c) {
+
1099 return os << "helios::RGBAcolor<" << c.r << ", " << c.g << ", " << c.b << ", " << c.a << ">";
+
1100 }
+
+
1101
+
1103 bool operator==( const helios::RGBAcolor &c ) const;
+
1105 bool operator!=( const helios::RGBAcolor &c ) const;
1106
-
1110 static float clamp( float value ){
-
1111 if( value<0.f ){
-
1112 return 0.f;
-
1113 }else if( value>1.f ){
-
1114 return 1.f;
-
1115 }else{
-
1116 return value;
-
1117 }
-
1118 }
-
1119
-
1120};
-
-
1121
-
1123
-
-
1130inline RGBAcolor make_RGBAcolor( float r, float g, float b, float a ){
-
1131 return {r,g,b,a};
-
1132}
-
-
1133
-
1135
-
-
1140inline RGBAcolor make_RGBAcolor( RGBcolor color, float a ){
-
1141 return {color.r,color.g,color.b,a};
-
1142}
-
-
1143
-
1145
-
1150RGBAcolor blend(const helios::RGBAcolor &color0_RGBA, const helios::RGBAcolor &color1_RGBA, float weight_RGBA );
-
1151
-
-
1152inline bool RGBAcolor::operator==( const RGBAcolor &c ) const{
-
1153 return c.r==r && c.g==g && c.b==b && c.a==a;
-
1154}
-
-
1155
-
-
1156inline bool RGBAcolor::operator!=( const RGBAcolor &c ) const{
-
1157 return c.r!=r || c.g!=g || c.b!=b || c.a!=a;
-
1158}
-
-
1159
-
1161
-
-
1165struct Date{
-
1166public:
-
1167
-
1169 int day;
-
1171 int month;
-
1173 int year;
-
1174
-
-
1176 Date(){
-
1177 day = 1;
-
1178 month = 1;
-
1179 year = 2000;
-
1180 }
-
-
1181
-
1183
-
-
1188 Date(int day, int month, int year ){
-
1189
-
1190 if(day < 1 || day > 31 ){
-
1191 throw(std::runtime_error("ERROR (Date constructor): Day of month is out of range (day of " + std::to_string(day) + " was given)."));
-
1192 }else if(month < 1 || month > 12){
-
1193 throw(std::runtime_error("ERROR (Date constructor): Month of year is out of range (month of " + std::to_string(month) + " was given)."));
-
1194 }else if( year<1000 ){
-
1195 throw(std::runtime_error( "ERROR (Date constructor): Year should be specified in YYYY format."));
-
1196 }
-
1197
-
1198 this->day = day;
-
1199 this->month = month;
-
1200 this->year = year;
-
1201
-
1202 }
-
-
1203
-
1205
-
1208 [[nodiscard]] int JulianDay() const;
-
1209
-
1211 void incrementDay();
+
1107private:
+
1109
+
1113 static float clamp( float value ){
+
1114 if( value<0.f ){
+
1115 return 0.f;
+
1116 }else if( value>1.f ){
+
1117 return 1.f;
+
1118 }else{
+
1119 return value;
+
1120 }
+
1121 }
+
1122
+
1123};
+
+
1124
+
1126
+
+
1133inline RGBAcolor make_RGBAcolor( float r, float g, float b, float a ){
+
1134 return {r,g,b,a};
+
1135}
+
+
1136
+
1138
+
+
1143inline RGBAcolor make_RGBAcolor( RGBcolor color, float a ){
+
1144 return {color.r,color.g,color.b,a};
+
1145}
+
+
1146
+
1148
+
1153RGBAcolor blend(const helios::RGBAcolor &color0_RGBA, const helios::RGBAcolor &color1_RGBA, float weight_RGBA );
+
1154
+
+
1155inline bool RGBAcolor::operator==( const RGBAcolor &c ) const{
+
1156 return c.r==r && c.g==g && c.b==b && c.a==a;
+
1157}
+
+
1158
+
+
1159inline bool RGBAcolor::operator!=( const RGBAcolor &c ) const{
+
1160 return c.r!=r || c.g!=g || c.b!=b || c.a!=a;
+
1161}
+
+
1162
+
1164
+
+
1168struct Date{
+
1169public:
+
1170
+
1172 int day;
+
1174 int month;
+
1176 int year;
+
1177
+
+
1179 Date(){
+
1180 day = 1;
+
1181 month = 1;
+
1182 year = 2000;
+
1183 }
+
+
1184
+
1186
+
+
1191 Date(int day, int month, int year ){
+
1192
+
1193 if(day < 1 || day > 31 ){
+
1194 throw(std::runtime_error("ERROR (Date constructor): Day of month is out of range (day of " + std::to_string(day) + " was given)."));
+
1195 }else if(month < 1 || month > 12){
+
1196 throw(std::runtime_error("ERROR (Date constructor): Month of year is out of range (month of " + std::to_string(month) + " was given)."));
+
1197 }else if( year<1000 ){
+
1198 throw(std::runtime_error( "ERROR (Date constructor): Year should be specified in YYYY format."));
+
1199 }
+
1200
+
1201 this->day = day;
+
1202 this->month = month;
+
1203 this->year = year;
+
1204
+
1205 }
+
+
1206
+
1208
+
1211 [[nodiscard]] int JulianDay() const;
1212
-
1214
-
1217 [[nodiscard]] bool isLeapYear() const;
-
1218
-
1220 bool operator==( const helios::Date &c ) const;
-
1222 bool operator!=( const helios::Date &c ) const;
-
1223
-
-
1225 friend std::ostream &operator<<(std::ostream &os, helios::Date const &d) {
-
1226 return os << d.year << "-" << std::setfill('0') << std::setw(2) << d.month << "-" << std::setfill('0') << std::setw(2) << d.day;
-
1227 }
-
-
1228
-
1229};
-
-
1230
-
1232
-
-
1238inline Date make_Date( int day, int month, int year ){
-
1239 if( day<1 || day>31 ){
-
1240 throw(std::runtime_error("ERROR (make_Date): Day of month is out of range (day of " + std::to_string(day) + " was given)."));
-
1241 }else if( month<1 || month>12){
-
1242 throw(std::runtime_error("ERROR (make_Date): Month of year is out of range (month of " + std::to_string(month) + " was given)."));
-
1243 }else if( year<1000 ){
-
1244 throw(std::runtime_error("ERROR (make_Date): Year should be specified in YYYY format."));
-
1245 }
-
1246
-
1247 return {day,month,year};
-
1248
-
1249}
-
-
1250
-
-
1251inline bool Date::operator==( const Date &c ) const{
-
1252 return c.day==day && c.month==month && c.year==year;
-
1253}
-
-
1254
-
-
1255inline bool Date::operator!=( const Date &c ) const{
-
1256 return c.day!=day || c.month!=month || c.year!=year;
-
1257}
-
-
1258
-
1260
-
-
1265inline Date Julian2Calendar( int JulianDay, int year ){
-
1266
-
1267 int day, month;
-
1268
-
1269 int skips_leap[] = {0, 31, 60, 91, 121, 152, 182, 213, 244, 274, 305, 335};
-
1270 int skips_nonleap[] = {0, 31, 59, 90, 120, 151, 181, 212, 243, 273, 304, 334};
-
1271 int* skips;
-
1272
-
1273 if( JulianDay<1 || JulianDay>366 ){
-
1274 throw(std::runtime_error("ERROR (Julian2Calendar): Julian day of " + std::to_string(JulianDay) + " is out of range (should be >0 and <367)."));
-
1275 }
-
1276
-
1277 if( (year-2000)%4 == 0 ){ //leap year
-
1278 skips=skips_leap;
-
1279 }else{ //non-leap year
-
1280 skips=skips_nonleap;
-
1281 }
-
1282
-
1283 int i;
-
1284 for( i=1; i<=12; i++ ){
-
1285 if( i==12 ){
-
1286 month = 12;
-
1287 }else if( JulianDay>skips[i-1] && JulianDay<=skips[i] ){
-
1288 month = i;
-
1289 break;
-
1290 }
-
1291 }
-
1292 assert( month>0 && month<13 );
-
1293
-
1294 day = JulianDay-skips[month-1];
-
1295
-
1296 assert(day>0 && day<32 );
-
1297
-
1298 return make_Date(day,month,year);
-
1299
-
1300}
-
-
1301
-
1303
-
-
1307inline int Calendar2Julian( Date date ){
-
1308
-
1309 int skips_leap[] = {0, 31, 60, 91, 121, 152, 182, 214, 244, 274, 305, 335};
-
1310 int skips_nonleap[] = {0, 31, 59, 90, 120, 151, 181, 212, 243, 273, 304, 334};
-
1311 int* skips;
-
1312
-
1313 if( (date.year-2000)%4 == 0 ){ //leap year
-
1314 skips=skips_leap;
-
1315 }else{ //non-leap year
-
1316 skips=skips_nonleap;
-
1317 }
-
1318
-
1319 int JD = skips[date.month-1]+date.day;
-
1320 assert( JD>0 && JD<366 );
-
1321
-
1322 return JD;
-
1323
-
1324}
-
-
1325
-
1327
-
-
1332inline Date make_Date( int JulianDay, int year ){
-
1333 if( JulianDay<1 || JulianDay>366 ){
-
1334 throw(std::runtime_error("ERROR (make_Date): Julian day is out of range (Julian day of " + std::to_string(JulianDay) + " was given)."));
-
1335 }else if( year<1000 ){
-
1336 throw(std::runtime_error("ERROR (make_Date): Year should be specified in YYYY format."));
-
1337 }
-
1338
-
1339 return Julian2Calendar(JulianDay,year);
-
1340
-
1341}
-
-
1342
-
1343
+
1214 void incrementDay();
+
1215
+
1217
+
1220 [[nodiscard]] bool isLeapYear() const;
+
1221
+
1223 bool operator==( const helios::Date &c ) const;
+
1225 bool operator!=( const helios::Date &c ) const;
+
1226
+
+
1228 friend std::ostream &operator<<(std::ostream &os, helios::Date const &d) {
+
1229 return os << d.year << "-" << std::setfill('0') << std::setw(2) << d.month << "-" << std::setfill('0') << std::setw(2) << d.day;
+
1230 }
+
+
1231
+
1232};
+
+
1233
+
1235
+
+
1241inline Date make_Date( int day, int month, int year ){
+
1242 if( day<1 || day>31 ){
+
1243 throw(std::runtime_error("ERROR (make_Date): Day of month is out of range (day of " + std::to_string(day) + " was given)."));
+
1244 }else if( month<1 || month>12){
+
1245 throw(std::runtime_error("ERROR (make_Date): Month of year is out of range (month of " + std::to_string(month) + " was given)."));
+
1246 }else if( year<1000 ){
+
1247 throw(std::runtime_error("ERROR (make_Date): Year should be specified in YYYY format."));
+
1248 }
+
1249
+
1250 return {day,month,year};
+
1251
+
1252}
+
+
1253
+
+
1254inline bool Date::operator==( const Date &c ) const{
+
1255 return c.day==day && c.month==month && c.year==year;
+
1256}
+
+
1257
+
+
1258inline bool Date::operator!=( const Date &c ) const{
+
1259 return c.day!=day || c.month!=month || c.year!=year;
+
1260}
+
+
1261
+
1263
+
+
1268inline Date Julian2Calendar( int JulianDay, int year ){
+
1269
+
1270 int day, month;
+
1271
+
1272 int skips_leap[] = {0, 31, 60, 91, 121, 152, 182, 213, 244, 274, 305, 335};
+
1273 int skips_nonleap[] = {0, 31, 59, 90, 120, 151, 181, 212, 243, 273, 304, 334};
+
1274 int* skips;
+
1275
+
1276 if( JulianDay<1 || JulianDay>366 ){
+
1277 throw(std::runtime_error("ERROR (Julian2Calendar): Julian day of " + std::to_string(JulianDay) + " is out of range (should be >0 and <367)."));
+
1278 }
+
1279
+
1280 if( (year-2000)%4 == 0 ){ //leap year
+
1281 skips=skips_leap;
+
1282 }else{ //non-leap year
+
1283 skips=skips_nonleap;
+
1284 }
+
1285
+
1286 int i;
+
1287 for( i=1; i<=12; i++ ){
+
1288 if( i==12 ){
+
1289 month = 12;
+
1290 }else if( JulianDay>skips[i-1] && JulianDay<=skips[i] ){
+
1291 month = i;
+
1292 break;
+
1293 }
+
1294 }
+
1295 assert( month>0 && month<13 );
+
1296
+
1297 day = JulianDay-skips[month-1];
+
1298
+
1299 assert(day>0 && day<32 );
+
1300
+
1301 return make_Date(day,month,year);
+
1302
+
1303}
+
+
1304
+
1306
+
+
1310inline int Calendar2Julian( Date date ){
+
1311
+
1312 int skips_leap[] = {0, 31, 60, 91, 121, 152, 182, 214, 244, 274, 305, 335};
+
1313 int skips_nonleap[] = {0, 31, 59, 90, 120, 151, 181, 212, 243, 273, 304, 334};
+
1314 int* skips;
+
1315
+
1316 if( (date.year-2000)%4 == 0 ){ //leap year
+
1317 skips=skips_leap;
+
1318 }else{ //non-leap year
+
1319 skips=skips_nonleap;
+
1320 }
+
1321
+
1322 int JD = skips[date.month-1]+date.day;
+
1323 assert( JD>0 && JD<366 );
+
1324
+
1325 return JD;
+
1326
+
1327}
+
+
1328
+
1330
+
+
1335inline Date make_Date( int JulianDay, int year ){
+
1336 if( JulianDay<1 || JulianDay>366 ){
+
1337 throw(std::runtime_error("ERROR (make_Date): Julian day is out of range (Julian day of " + std::to_string(JulianDay) + " was given)."));
+
1338 }else if( year<1000 ){
+
1339 throw(std::runtime_error("ERROR (make_Date): Year should be specified in YYYY format."));
+
1340 }
+
1341
+
1342 return Julian2Calendar(JulianDay,year);
+
1343
+
1344}
+
1345
-
-
1349struct Time{
-
1350
-
1352 int second;
-
1354 int minute;
-
1356 int hour;
-
1357
-
-
1359 Time(){
-
1360 second = 0;
-
1361 minute = 0;
-
1362 hour = 0;
-
1363 }
-
-
1364
-
1366
-
-
1370 Time( int hour, int minute ){
-
1371
-
1372 if( minute<0 || minute>59 ){
-
1373 throw(std::runtime_error("ERROR (Time constructor): Minute out of range (0-59)."));
-
1374 }else if( hour<0 || hour>23 ){
-
1375 throw(std::runtime_error("ERROR (Time constructor): Hour out of range (0-23)."));
-
1376 }
-
1377
-
1378 this->second = 0;
-
1379 this->minute = minute;
-
1380 this->hour = hour;
-
1381
-
1382 }
-
-
1383
-
1385
-
-
1390 Time( int hour, int minute, int second ){
-
1391
-
1392 if( second<0 || second>59 ){
-
1393 throw(std::runtime_error("ERROR (Time constructor): Second out of range (0-59)."));
-
1394 }else if( minute<0 || minute>59 ){
-
1395 throw(std::runtime_error("ERROR (Time constructor): Minute out of range (0-59)."));
-
1396 }else if( hour<0 || hour>23 ){
-
1397 throw(std::runtime_error("ERROR (Time constructor): Hour out of range (0-23)."));
-
1398 }
-
1399
-
1400 this->second = second;
-
1401 this->minute = minute;
-
1402 this->hour = hour;
-
1403
-
1404 }
-
-
1405
-
1407 bool operator==( const helios::Time &c ) const;
-
1409 bool operator!=( const helios::Time &c ) const;
-
1410
-
-
1412 friend std::ostream &operator<<(std::ostream &os, helios::Time const &t) {
-
1413 return os << t.hour << ":" << std::setfill('0') << std::setw(2) << t.minute << ":" << std::setfill('0') << std::setw(2) << t.second;
-
1414 }
-
-
1415
-
1416};
-
-
1417
-
1419
-
-
1424inline Time make_Time( int hour, int minute ){
-
1425 if( minute<0 || minute>59 ){
-
1426 throw(std::runtime_error("ERROR (make_Time): Minute of " + std::to_string(minute) + " out of range (0-59)."));
-
1427 }else if( hour<0 || hour>23 ){
-
1428 throw(std::runtime_error("ERROR (make_Time): Hour of " + std::to_string(hour) + " out of range (0-23)."));
-
1429 }
-
1430
-
1431 return {hour,minute,0};
-
1432
-
1433}
-
-
1434
-
1436
-
-
1442inline Time make_Time( int hour, int minute, int second ){
-
1443 if( second<0 || second>59 ){
-
1444 throw(std::runtime_error("ERROR (make_Time): Second of " + std::to_string(second) + " out of range (0-59)."));
-
1445 }else if( minute<0 || minute>59 ){
-
1446 throw(std::runtime_error("ERROR (make_Time): Minute of " + std::to_string(minute) + " out of range (0-59)."));
-
1447 }else if( hour<0 || hour>23 ){
-
1448 throw(std::runtime_error("ERROR (make_Time): Hour of " + std::to_string(hour) + " out of range (0-23)."));
-
1449 }
-
1450
-
1451 return {hour,minute,second};
-
1452
-
1453}
-
-
1454
-
-
1455inline bool Time::operator==( const Time &c ) const{
-
1456 return c.hour==hour && c.minute==minute && c.second==second;
-
1457}
-
-
1458
-
-
1459inline bool Time::operator!=( const Time &c ) const{
-
1460 return c.hour!=hour || c.minute!=minute || c.second!=second;
-
1461}
-
-
1462
-
1463
+
1346
+
1348
+
+
1352struct Time{
+
1353
+
1355 int second;
+
1357 int minute;
+
1359 int hour;
+
1360
+
+
1362 Time(){
+
1363 second = 0;
+
1364 minute = 0;
+
1365 hour = 0;
+
1366 }
+
+
1367
+
1369
+
+
1373 Time( int hour, int minute ){
+
1374
+
1375 if( minute<0 || minute>59 ){
+
1376 throw(std::runtime_error("ERROR (Time constructor): Minute out of range (0-59)."));
+
1377 }else if( hour<0 || hour>23 ){
+
1378 throw(std::runtime_error("ERROR (Time constructor): Hour out of range (0-23)."));
+
1379 }
+
1380
+
1381 this->second = 0;
+
1382 this->minute = minute;
+
1383 this->hour = hour;
+
1384
+
1385 }
+
+
1386
+
1388
+
+
1393 Time( int hour, int minute, int second ){
+
1394
+
1395 if( second<0 || second>59 ){
+
1396 throw(std::runtime_error("ERROR (Time constructor): Second out of range (0-59)."));
+
1397 }else if( minute<0 || minute>59 ){
+
1398 throw(std::runtime_error("ERROR (Time constructor): Minute out of range (0-59)."));
+
1399 }else if( hour<0 || hour>23 ){
+
1400 throw(std::runtime_error("ERROR (Time constructor): Hour out of range (0-23)."));
+
1401 }
+
1402
+
1403 this->second = second;
+
1404 this->minute = minute;
+
1405 this->hour = hour;
+
1406
+
1407 }
+
+
1408
+
1410 bool operator==( const helios::Time &c ) const;
+
1412 bool operator!=( const helios::Time &c ) const;
+
1413
+
+
1415 friend std::ostream &operator<<(std::ostream &os, helios::Time const &t) {
+
1416 return os << t.hour << ":" << std::setfill('0') << std::setw(2) << t.minute << ":" << std::setfill('0') << std::setw(2) << t.second;
+
1417 }
+
+
1418
+
1419};
+
+
1420
+
1422
+
+
1427inline Time make_Time( int hour, int minute ){
+
1428 if( minute<0 || minute>59 ){
+
1429 throw(std::runtime_error("ERROR (make_Time): Minute of " + std::to_string(minute) + " out of range (0-59)."));
+
1430 }else if( hour<0 || hour>23 ){
+
1431 throw(std::runtime_error("ERROR (make_Time): Hour of " + std::to_string(hour) + " out of range (0-23)."));
+
1432 }
+
1433
+
1434 return {hour,minute,0};
+
1435
+
1436}
+
+
1437
+
1439
+
+
1445inline Time make_Time( int hour, int minute, int second ){
+
1446 if( second<0 || second>59 ){
+
1447 throw(std::runtime_error("ERROR (make_Time): Second of " + std::to_string(second) + " out of range (0-59)."));
+
1448 }else if( minute<0 || minute>59 ){
+
1449 throw(std::runtime_error("ERROR (make_Time): Minute of " + std::to_string(minute) + " out of range (0-59)."));
+
1450 }else if( hour<0 || hour>23 ){
+
1451 throw(std::runtime_error("ERROR (make_Time): Hour of " + std::to_string(hour) + " out of range (0-23)."));
+
1452 }
+
1453
+
1454 return {hour,minute,second};
+
1455
+
1456}
+
+
1457
+
+
1458inline bool Time::operator==( const Time &c ) const{
+
1459 return c.hour==hour && c.minute==minute && c.second==second;
+
1460}
+
+
1461
+
+
1462inline bool Time::operator!=( const Time &c ) const{
+
1463 return c.hour!=hour || c.minute!=minute || c.second!=second;
+
1464}
+
1465
-
-
1468struct SphericalCoord{
-
1469private:
-
1470
-
1471 float elevation_private;
-
1472 float zenith_private;
+
1466
+
1468
+
+
1471struct SphericalCoord{
+
1472private:
1473
-
1474public:
-
1475
-
1477 float radius;
-
1479 /*
-
1480 * \note Elevation angle is read-only, since it is linked to the zenith angle.
-
1481 */
-
1482 const float &elevation;
-
1484 /*
-
1485 * \note Zenith angle is read-only, since it is linked to the elevation angle.
-
1486 */
-
1487 const float &zenith;
-
1489 float azimuth;
-
1490
-
1492
-
-
1493 SphericalCoord() : elevation_private(0.5*float(M_PI)), elevation(elevation_private), zenith_private(0.f), zenith(zenith_private) {
-
1494 radius=1;
-
1495 azimuth=0;
-
1496 }
-
-
1498
-
1503 SphericalCoord(float radius, float elevation_radians, float azimuth_radians ) : elevation_private(elevation_radians), elevation(elevation_private), zenith_private(0.5f * float(M_PI) - elevation_radians), zenith(zenith_private), radius(radius), azimuth(azimuth_radians) {}
-
1504
-
1506 SphericalCoord( const SphericalCoord &c ) : elevation_private(c.elevation_private), elevation(elevation_private), zenith_private(c.zenith_private), zenith(zenith_private), radius(c.radius), azimuth(c.azimuth) {}
+
1474 float elevation_private;
+
1475 float zenith_private;
+
1476
+
1477public:
+
1478
+
1480 float radius;
+
1482 /*
+
1483 * \note Elevation angle is read-only, since it is linked to the zenith angle.
+
1484 */
+
1485 const float &elevation;
+
1487 /*
+
1488 * \note Zenith angle is read-only, since it is linked to the elevation angle.
+
1489 */
+
1490 const float &zenith;
+
1492 float azimuth;
+
1493
+
1495
+
+
1496 SphericalCoord() : elevation_private(0.5*float(M_PI)), elevation(elevation_private), zenith_private(0.f), zenith(zenith_private) {
+
1497 radius=1;
+
1498 azimuth=0;
+
1499 }
+
+
1501
+
1506 SphericalCoord(float radius, float elevation_radians, float azimuth_radians ) : elevation_private(elevation_radians), elevation(elevation_private), zenith_private(0.5f * float(M_PI) - elevation_radians), zenith(zenith_private), radius(radius), azimuth(azimuth_radians) {}
1507
-
-
1509 SphericalCoord& operator=( const SphericalCoord &c ){
-
1510 if( this != &c ){
-
1511 elevation_private = c.elevation_private;
-
1512 zenith_private = c.zenith_private;
-
1513 radius = c.radius;
-
1514 azimuth = c.azimuth;
-
1515 }
-
1516 return *this;
-
1517 }
-
-
1518
-
1520 bool operator==( const helios::SphericalCoord &c ) const;
-
1522 bool operator!=( const helios::SphericalCoord &c ) const;
-
1523
-
-
1525 friend std::ostream &operator<<(std::ostream &os, helios::SphericalCoord const &coord) {
-
1526 return os << "helios::SphericalCoord<" << coord.radius << ", " << coord.elevation << ", " << coord.azimuth << ">";
-
1527 }
-
-
1528
-
1529};
-
-
1530
-
1532
-
-
1536inline SphericalCoord make_SphericalCoord(float elevation_radians, float azimuth_radians ){
-
1537 return {1, elevation_radians, azimuth_radians};
-
1538}
-
-
1539
-
1541
-
-
1546 inline SphericalCoord make_SphericalCoord(float radius, float elevation_radians, float azimuth_radians ){
-
1547 return {radius, elevation_radians, azimuth_radians};
-
1548}
-
-
1549
-
-
1550inline bool SphericalCoord::operator==( const SphericalCoord &c ) const{
-
1551 return c.radius==radius && c.zenith==zenith && c.elevation==elevation && c.azimuth==azimuth;
-
1552}
-
-
1553
-
-
1554inline bool SphericalCoord::operator!=( const SphericalCoord &c ) const {
-
1555 return c.radius!=radius || c.zenith!=zenith || c.elevation!=elevation || c.azimuth!=azimuth;
-
1556}
-
-
1557
-
1558
+
1509 SphericalCoord( const SphericalCoord &c ) : elevation_private(c.elevation_private), elevation(elevation_private), zenith_private(c.zenith_private), zenith(zenith_private), radius(c.radius), azimuth(c.azimuth) {}
+
1510
+
+
1512 SphericalCoord& operator=( const SphericalCoord &c ){
+
1513 if( this != &c ){
+
1514 elevation_private = c.elevation_private;
+
1515 zenith_private = c.zenith_private;
+
1516 radius = c.radius;
+
1517 azimuth = c.azimuth;
+
1518 }
+
1519 return *this;
+
1520 }
+
+
1521
+
1523 bool operator==( const helios::SphericalCoord &c ) const;
+
1525 bool operator!=( const helios::SphericalCoord &c ) const;
+
1526
+
+
1528 friend std::ostream &operator<<(std::ostream &os, helios::SphericalCoord const &coord) {
+
1529 return os << "helios::SphericalCoord<" << coord.radius << ", " << coord.elevation << ", " << coord.azimuth << ">";
+
1530 }
+
+
1531
+
1532};
+
+
1533
+
1535
+
+
1539inline SphericalCoord make_SphericalCoord(float elevation_radians, float azimuth_radians ){
+
1540 return {1, elevation_radians, azimuth_radians};
+
1541}
+
+
1542
+
1544
+
+
1549 inline SphericalCoord make_SphericalCoord(float radius, float elevation_radians, float azimuth_radians ){
+
1550 return {radius, elevation_radians, azimuth_radians};
+
1551}
+
+
1552
+
+
1553inline bool SphericalCoord::operator==( const SphericalCoord &c ) const{
+
1554 return c.radius==radius && c.zenith==zenith && c.elevation==elevation && c.azimuth==azimuth;
+
1555}
+
+
1556
+
+
1557inline bool SphericalCoord::operator!=( const SphericalCoord &c ) const {
+
1558 return c.radius!=radius || c.zenith!=zenith || c.elevation!=elevation || c.azimuth!=azimuth;
1559}
+
1560
-
1561#endif
+
1561
+
1562}
+
1563
+
1564#endif
helios::JulianDay
int JulianDay(int day, int month, int year)
Convert calendar day (day,month,year) to Julian day.
Definition global.cpp:1268
helios::make_int2
int2 make_int2(int x, int y)
Make an int2 vector from two ints.
Definition helios_vector_types.h:99
-
helios::make_Time
Time make_Time(int hour, int minute)
Make a Time vector.
Definition helios_vector_types.h:1424
-
helios::make_vec2
vec2 make_vec2(float x, float y)
Make a vec2 from two floats.
Definition helios_vector_types.h:432
-
helios::make_RGBAcolor
RGBAcolor make_RGBAcolor(float r, float g, float b, float a)
Make an RGBAcolor vector.
Definition helios_vector_types.h:1130
-
helios::make_Date
Date make_Date(int day, int month, int year)
Make a Date vector.
Definition helios_vector_types.h:1238
-
helios::Julian2Calendar
Date Julian2Calendar(int JulianDay, int year)
Convert a Julian day to a calendar Date vector.
Definition helios_vector_types.h:1265
-
helios::Calendar2Julian
int Calendar2Julian(Date date)
Convert a calendar Date vector to Julian day.
Definition helios_vector_types.h:1307
-
helios::make_RGBcolor
RGBcolor make_RGBcolor(float r, float g, float b)
Make an RGBcolor vector.
Definition helios_vector_types.h:951
-
helios::operator*
vec2 operator*(float a, const vec2 &v)
Multiply each element by scalar (scalar is multiplied on left: a*vec2)
Definition helios_vector_types.h:480
-
helios::operator-
vec2 operator-(float a, const vec2 &v)
Subtract a scalar from each element (scalar is subtracted on left: a-vec2)
Definition helios_vector_types.h:472
+
helios::make_Time
Time make_Time(int hour, int minute)
Make a Time vector.
Definition helios_vector_types.h:1427
+
helios::make_vec2
vec2 make_vec2(float x, float y)
Make a vec2 from two floats.
Definition helios_vector_types.h:433
+
helios::make_RGBAcolor
RGBAcolor make_RGBAcolor(float r, float g, float b, float a)
Make an RGBAcolor vector.
Definition helios_vector_types.h:1133
+
helios::make_Date
Date make_Date(int day, int month, int year)
Make a Date vector.
Definition helios_vector_types.h:1241
+
helios::Julian2Calendar
Date Julian2Calendar(int JulianDay, int year)
Convert a Julian day to a calendar Date vector.
Definition helios_vector_types.h:1268
+
helios::Calendar2Julian
int Calendar2Julian(Date date)
Convert a calendar Date vector to Julian day.
Definition helios_vector_types.h:1310
+
helios::make_RGBcolor
RGBcolor make_RGBcolor(float r, float g, float b)
Make an RGBcolor vector.
Definition helios_vector_types.h:954
+
helios::operator*
vec2 operator*(float a, const vec2 &v)
Multiply each element by scalar (scalar is multiplied on left: a*vec2)
Definition helios_vector_types.h:481
+
helios::operator-
vec2 operator-(float a, const vec2 &v)
Subtract a scalar from each element (scalar is subtracted on left: a-vec2)
Definition helios_vector_types.h:473
helios::make_int3
int3 make_int3(int X, int Y, int Z)
Make an int3 vector from three ints.
Definition helios_vector_types.h:198
-
helios::operator+
vec2 operator+(float a, const vec2 &v)
Add a scalar to each element (scalar is added on left: a+vec2)
Definition helios_vector_types.h:460
-
helios::make_vec3
vec3 make_vec3(float x, float y, float z)
Make a vec3 from three floats.
Definition helios_vector_types.h:587
-
helios::cross
vec3 cross(const vec3 &a, const vec3 &b)
Cross product of two vec3 vectors.
Definition helios_vector_types.h:597
-
helios::make_vec4
vec4 make_vec4(float x, float y, float z, float w)
Make a vec4 from three floats.
Definition helios_vector_types.h:760
+
helios::operator+
vec2 operator+(float a, const vec2 &v)
Add a scalar to each element (scalar is added on left: a+vec2)
Definition helios_vector_types.h:461
+
helios::make_vec3
vec3 make_vec3(float x, float y, float z)
Make a vec3 from three floats.
Definition helios_vector_types.h:589
+
helios::cross
vec3 cross(const vec3 &a, const vec3 &b)
Cross product of two vec3 vectors.
Definition helios_vector_types.h:599
+
helios::make_vec4
vec4 make_vec4(float x, float y, float z, float w)
Make a vec4 from three floats.
Definition helios_vector_types.h:763
helios::make_int4
int4 make_int4(int x, int y, int z, int w)
Make an int4 vector from three ints.
Definition helios_vector_types.h:299
-
helios::make_SphericalCoord
SphericalCoord make_SphericalCoord(float elevation_radians, float azimuth_radians)
Make a SphericalCoord by specifying elevation and azimuth.
Definition helios_vector_types.h:1536
- -
helios::Date::operator==
bool operator==(const helios::Date &c) const
check for equality of two dates
Definition helios_vector_types.h:1251
-
helios::Date::Date
Date()
Default constructor.
Definition helios_vector_types.h:1176
-
helios::Date::operator<<
friend std::ostream & operator<<(std::ostream &os, helios::Date const &d)
Write Date to output stream.
Definition helios_vector_types.h:1225
-
helios::Date::month
int month
Month of year.
Definition helios_vector_types.h:1171
+
helios::make_SphericalCoord
SphericalCoord make_SphericalCoord(float elevation_radians, float azimuth_radians)
Make a SphericalCoord by specifying elevation and azimuth.
Definition helios_vector_types.h:1539
+ +
helios::Date::operator==
bool operator==(const helios::Date &c) const
check for equality of two dates
Definition helios_vector_types.h:1254
+
helios::Date::Date
Date()
Default constructor.
Definition helios_vector_types.h:1179
+
helios::Date::operator<<
friend std::ostream & operator<<(std::ostream &os, helios::Date const &d)
Write Date to output stream.
Definition helios_vector_types.h:1228
+
helios::Date::month
int month
Month of year.
Definition helios_vector_types.h:1174
helios::Date::incrementDay
void incrementDay()
Increment Date vector by one day.
Definition global.cpp:202
-
helios::Date::day
int day
Day of month.
Definition helios_vector_types.h:1169
-
helios::Date::operator!=
bool operator!=(const helios::Date &c) const
check for inequality of two Dates
Definition helios_vector_types.h:1255
-
helios::Date::Date
Date(int day, int month, int year)
Day/Month/Year constructor.
Definition helios_vector_types.h:1188
+
helios::Date::day
int day
Day of month.
Definition helios_vector_types.h:1172
+
helios::Date::operator!=
bool operator!=(const helios::Date &c) const
check for inequality of two Dates
Definition helios_vector_types.h:1258
+
helios::Date::Date
Date(int day, int month, int year)
Day/Month/Year constructor.
Definition helios_vector_types.h:1191
helios::Date::JulianDay
int JulianDay() const
Convert to Julian day.
Definition global.cpp:186
helios::Date::isLeapYear
bool isLeapYear() const
Check whether it is a leap year.
Definition global.cpp:215
-
helios::Date::year
int year
Year in YYYY format.
Definition helios_vector_types.h:1173
-
helios::RGBAcolor
R-G-B-A color vector.
Definition helios_vector_types.h:1021
-
helios::RGBAcolor::r
float r
Red color component.
Definition helios_vector_types.h:1026
-
helios::RGBAcolor::a
float a
Alpha (transparency) component.
Definition helios_vector_types.h:1035
-
helios::RGBAcolor::RGBAcolor
RGBAcolor()
Default constructor - initializes color to black.
Definition helios_vector_types.h:1038
-
helios::RGBAcolor::RGBAcolor
RGBAcolor(float r, float g, float b, float a)
Constructor given three floats denoting R-G-B components.
Definition helios_vector_types.h:1048
-
helios::RGBAcolor::scale
void scale(float scale_factor)
Scale RGBAcolor by some factor.
Definition helios_vector_types.h:1084
-
helios::RGBAcolor::operator!=
bool operator!=(const helios::RGBAcolor &c) const
check for inequality of two RGBA colors
Definition helios_vector_types.h:1156
-
helios::RGBAcolor::RGBAcolor
RGBAcolor(const float C[4])
Constructor given an array of three floats denoting R-G-B-A components.
Definition helios_vector_types.h:1059
-
helios::RGBAcolor::operator<<
friend std::ostream & operator<<(std::ostream &os, const helios::RGBAcolor &c)
write RGBAcolor to output stream
Definition helios_vector_types.h:1095
-
helios::RGBAcolor::b
float b
Blue color component.
Definition helios_vector_types.h:1032
-
helios::RGBAcolor::operator==
bool operator==(const helios::RGBAcolor &c) const
check for equality of two RGBA colors
Definition helios_vector_types.h:1152
-
helios::RGBAcolor::g
float g
Green color component.
Definition helios_vector_types.h:1029
-
helios::RGBAcolor::RGBAcolor
RGBAcolor(const std::vector< float > &C)
Constructor given a vector of three floats denoting R-G-B-A components.
Definition helios_vector_types.h:1070
-
helios::RGBcolor
R-G-B color vector.
Definition helios_vector_types.h:841
-
helios::RGBcolor::RGBcolor
RGBcolor()
Default constructor - initializes color to black.
Definition helios_vector_types.h:855
-
helios::RGBcolor::b
float b
Blue color component.
Definition helios_vector_types.h:852
-
helios::RGBcolor::operator==
bool operator==(const RGBcolor &c) const
check for equality of two RGB colors
Definition helios_vector_types.h:963
-
helios::RGBcolor::r
float r
Red color component.
Definition helios_vector_types.h:846
-
helios::RGBcolor::RGBcolor
RGBcolor(float r, float g, float b)
Constructor given three floats denoting R-G-B components.
Definition helios_vector_types.h:864
-
helios::RGBcolor::operator<<
friend std::ostream & operator<<(std::ostream &os, const helios::RGBcolor &c)
write RGBcolor to output stream
Definition helios_vector_types.h:917
-
helios::RGBcolor::scale
void scale(float scale_factor)
Scale RGBcolor by some factor.
Definition helios_vector_types.h:907
-
helios::RGBcolor::RGBcolor
RGBcolor(const std::vector< float > &C)
Constructor given a vector of three floats denoting R-G-B components.
Definition helios_vector_types.h:884
-
helios::RGBcolor::operator!=
bool operator!=(const RGBcolor &c) const
check for inequality of two RGB colors
Definition helios_vector_types.h:967
-
helios::RGBcolor::RGBcolor
RGBcolor(const float C[3])
Constructor given an array of three floats denoting R-G-B components.
Definition helios_vector_types.h:874
-
helios::RGBcolor::g
float g
Green color component.
Definition helios_vector_types.h:849
-
helios::RGBcolor::RGBcolor
RGBcolor(const vec3 &C)
Constructor given a vec3 denoting R-G-B components.
Definition helios_vector_types.h:897
-
helios::SphericalCoord
Vector of spherical coordinates (elevation,azimuth)
Definition helios_vector_types.h:1468
- -
helios::SphericalCoord::operator!=
bool operator!=(const helios::SphericalCoord &c) const
check for inequality of two spherical coordinates
Definition helios_vector_types.h:1554
-
helios::SphericalCoord::zenith
const float & zenith
Zenithal angle (radians)
Definition helios_vector_types.h:1487
-
helios::SphericalCoord::SphericalCoord
SphericalCoord()
Default constructor.
Definition helios_vector_types.h:1493
-
helios::SphericalCoord::SphericalCoord
SphericalCoord(const SphericalCoord &c)
Copy constructor.
Definition helios_vector_types.h:1506
-
helios::SphericalCoord::elevation
const float & elevation
Elevation angle (radians)
Definition helios_vector_types.h:1482
-
helios::SphericalCoord::operator<<
friend std::ostream & operator<<(std::ostream &os, helios::SphericalCoord const &coord)
Write SphericalCoord to output stream.
Definition helios_vector_types.h:1525
-
helios::SphericalCoord::SphericalCoord
SphericalCoord(float radius, float elevation_radians, float azimuth_radians)
Initialize SphericalCoord by specifying radius, elevation, and azimuth.
Definition helios_vector_types.h:1503
-
helios::SphericalCoord::azimuth
float azimuth
Azimuthal angle (radians)
Definition helios_vector_types.h:1489
-
helios::SphericalCoord::operator==
bool operator==(const helios::SphericalCoord &c) const
check for equality of two spherical coordinates
Definition helios_vector_types.h:1550
-
helios::SphericalCoord::operator=
SphericalCoord & operator=(const SphericalCoord &c)
Assignment operator.
Definition helios_vector_types.h:1509
- -
helios::Time::Time
Time(int hour, int minute)
second/minute/hour constructor
Definition helios_vector_types.h:1370
-
helios::Time::operator<<
friend std::ostream & operator<<(std::ostream &os, helios::Time const &t)
Write Time to output stream.
Definition helios_vector_types.h:1412
-
helios::Time::Time
Time()
Default constructor.
Definition helios_vector_types.h:1359
-
helios::Time::second
int second
Second of minute.
Definition helios_vector_types.h:1352
-
helios::Time::hour
int hour
Hour of day.
Definition helios_vector_types.h:1356
-
helios::Time::minute
int minute
Minute of hour.
Definition helios_vector_types.h:1354
-
helios::Time::operator==
bool operator==(const helios::Time &c) const
check for equality of two times
Definition helios_vector_types.h:1455
-
helios::Time::Time
Time(int hour, int minute, int second)
minute/hour constructor
Definition helios_vector_types.h:1390
-
helios::Time::operator!=
bool operator!=(const helios::Time &c) const
check for inequality of two times
Definition helios_vector_types.h:1459
+
helios::Date::year
int year
Year in YYYY format.
Definition helios_vector_types.h:1176
+
helios::RGBAcolor
R-G-B-A color vector.
Definition helios_vector_types.h:1024
+
helios::RGBAcolor::r
float r
Red color component.
Definition helios_vector_types.h:1029
+
helios::RGBAcolor::a
float a
Alpha (transparency) component.
Definition helios_vector_types.h:1038
+
helios::RGBAcolor::RGBAcolor
RGBAcolor()
Default constructor - initializes color to black.
Definition helios_vector_types.h:1041
+
helios::RGBAcolor::RGBAcolor
RGBAcolor(float r, float g, float b, float a)
Constructor given three floats denoting R-G-B components.
Definition helios_vector_types.h:1051
+
helios::RGBAcolor::scale
void scale(float scale_factor)
Scale RGBAcolor by some factor.
Definition helios_vector_types.h:1087
+
helios::RGBAcolor::operator!=
bool operator!=(const helios::RGBAcolor &c) const
check for inequality of two RGBA colors
Definition helios_vector_types.h:1159
+
helios::RGBAcolor::RGBAcolor
RGBAcolor(const float C[4])
Constructor given an array of three floats denoting R-G-B-A components.
Definition helios_vector_types.h:1062
+
helios::RGBAcolor::operator<<
friend std::ostream & operator<<(std::ostream &os, const helios::RGBAcolor &c)
write RGBAcolor to output stream
Definition helios_vector_types.h:1098
+
helios::RGBAcolor::b
float b
Blue color component.
Definition helios_vector_types.h:1035
+
helios::RGBAcolor::operator==
bool operator==(const helios::RGBAcolor &c) const
check for equality of two RGBA colors
Definition helios_vector_types.h:1155
+
helios::RGBAcolor::g
float g
Green color component.
Definition helios_vector_types.h:1032
+
helios::RGBAcolor::RGBAcolor
RGBAcolor(const std::vector< float > &C)
Constructor given a vector of three floats denoting R-G-B-A components.
Definition helios_vector_types.h:1073
+
helios::RGBcolor
R-G-B color vector.
Definition helios_vector_types.h:844
+
helios::RGBcolor::RGBcolor
RGBcolor()
Default constructor - initializes color to black.
Definition helios_vector_types.h:858
+
helios::RGBcolor::b
float b
Blue color component.
Definition helios_vector_types.h:855
+
helios::RGBcolor::operator==
bool operator==(const RGBcolor &c) const
check for equality of two RGB colors
Definition helios_vector_types.h:966
+
helios::RGBcolor::r
float r
Red color component.
Definition helios_vector_types.h:849
+
helios::RGBcolor::RGBcolor
RGBcolor(float r, float g, float b)
Constructor given three floats denoting R-G-B components.
Definition helios_vector_types.h:867
+
helios::RGBcolor::operator<<
friend std::ostream & operator<<(std::ostream &os, const helios::RGBcolor &c)
write RGBcolor to output stream
Definition helios_vector_types.h:920
+
helios::RGBcolor::scale
void scale(float scale_factor)
Scale RGBcolor by some factor.
Definition helios_vector_types.h:910
+
helios::RGBcolor::RGBcolor
RGBcolor(const std::vector< float > &C)
Constructor given a vector of three floats denoting R-G-B components.
Definition helios_vector_types.h:887
+
helios::RGBcolor::operator!=
bool operator!=(const RGBcolor &c) const
check for inequality of two RGB colors
Definition helios_vector_types.h:970
+
helios::RGBcolor::RGBcolor
RGBcolor(const float C[3])
Constructor given an array of three floats denoting R-G-B components.
Definition helios_vector_types.h:877
+
helios::RGBcolor::g
float g
Green color component.
Definition helios_vector_types.h:852
+
helios::RGBcolor::RGBcolor
RGBcolor(const vec3 &C)
Constructor given a vec3 denoting R-G-B components.
Definition helios_vector_types.h:900
+
helios::SphericalCoord
Vector of spherical coordinates (elevation,azimuth)
Definition helios_vector_types.h:1471
+ +
helios::SphericalCoord::operator!=
bool operator!=(const helios::SphericalCoord &c) const
check for inequality of two spherical coordinates
Definition helios_vector_types.h:1557
+
helios::SphericalCoord::zenith
const float & zenith
Zenithal angle (radians)
Definition helios_vector_types.h:1490
+
helios::SphericalCoord::SphericalCoord
SphericalCoord()
Default constructor.
Definition helios_vector_types.h:1496
+
helios::SphericalCoord::SphericalCoord
SphericalCoord(const SphericalCoord &c)
Copy constructor.
Definition helios_vector_types.h:1509
+
helios::SphericalCoord::elevation
const float & elevation
Elevation angle (radians)
Definition helios_vector_types.h:1485
+
helios::SphericalCoord::operator<<
friend std::ostream & operator<<(std::ostream &os, helios::SphericalCoord const &coord)
Write SphericalCoord to output stream.
Definition helios_vector_types.h:1528
+
helios::SphericalCoord::SphericalCoord
SphericalCoord(float radius, float elevation_radians, float azimuth_radians)
Initialize SphericalCoord by specifying radius, elevation, and azimuth.
Definition helios_vector_types.h:1506
+
helios::SphericalCoord::azimuth
float azimuth
Azimuthal angle (radians)
Definition helios_vector_types.h:1492
+
helios::SphericalCoord::operator==
bool operator==(const helios::SphericalCoord &c) const
check for equality of two spherical coordinates
Definition helios_vector_types.h:1553
+
helios::SphericalCoord::operator=
SphericalCoord & operator=(const SphericalCoord &c)
Assignment operator.
Definition helios_vector_types.h:1512
+ +
helios::Time::Time
Time(int hour, int minute)
second/minute/hour constructor
Definition helios_vector_types.h:1373
+
helios::Time::operator<<
friend std::ostream & operator<<(std::ostream &os, helios::Time const &t)
Write Time to output stream.
Definition helios_vector_types.h:1415
+
helios::Time::Time
Time()
Default constructor.
Definition helios_vector_types.h:1362
+
helios::Time::second
int second
Second of minute.
Definition helios_vector_types.h:1355
+
helios::Time::hour
int hour
Hour of day.
Definition helios_vector_types.h:1359
+
helios::Time::minute
int minute
Minute of hour.
Definition helios_vector_types.h:1357
+
helios::Time::operator==
bool operator==(const helios::Time &c) const
check for equality of two times
Definition helios_vector_types.h:1458
+
helios::Time::Time
Time(int hour, int minute, int second)
minute/hour constructor
Definition helios_vector_types.h:1393
+
helios::Time::operator!=
bool operator!=(const helios::Time &c) const
check for inequality of two times
Definition helios_vector_types.h:1462
helios::int2
Vector of two elements of type 'int'.
Definition helios_vector_types.h:44
helios::int2::operator+
int2 operator+(const int2 &a) const
Add two int2 vectors.
Definition helios_vector_types.h:112
helios::int2::y
int y
Second element in vector.
Definition helios_vector_types.h:50
@@ -1692,62 +1695,62 @@
helios::int4::y
int y
Second element in vector.
Definition helios_vector_types.h:249
helios::int4::operator!=
bool operator!=(const int4 &a) const
Inequality for all elements.
Definition helios_vector_types.h:336
helios::vec2
Vector of two elements of type 'float'.
Definition helios_vector_types.h:346
-
helios::vec2::operator+=
vec2 & operator+=(const vec2 &a)
Increment vec2 vector.
Definition helios_vector_types.h:444
-
helios::vec2::operator!=
bool operator!=(const vec2 &a) const
check for inequality of two vec2 vectors
Definition helios_vector_types.h:492
-
helios::vec2::magnitude
float magnitude() const
Compute the vector magnitude.
Definition helios_vector_types.h:365
-
helios::vec2::vec2
vec2(const std::vector< float > &v)
Initialize vec2 using a vector of floats.
Definition helios_vector_types.h:374
-
helios::vec2::operator-=
vec2 & operator-=(const vec2 &a)
Decrement vec2 vector.
Definition helios_vector_types.h:450
-
helios::vec2::operator<<
friend std::ostream & operator<<(std::ostream &os, const helios::vec2 &vec)
Write vec2 to output stream.
Definition helios_vector_types.h:413
-
helios::vec2::vec2
vec2(const float v[2])
Initialize vec2 using an array of floats.
Definition helios_vector_types.h:382
+
helios::vec2::operator+=
vec2 & operator+=(const vec2 &a)
Increment vec2 vector.
Definition helios_vector_types.h:445
+
helios::vec2::normalize
vec2 normalize()
Normalize vector components such that the magnitude is unity.
Definition helios_vector_types.h:355
+
helios::vec2::operator!=
bool operator!=(const vec2 &a) const
check for inequality of two vec2 vectors
Definition helios_vector_types.h:493
+
helios::vec2::magnitude
float magnitude() const
Compute the vector magnitude.
Definition helios_vector_types.h:366
+
helios::vec2::vec2
vec2(const std::vector< float > &v)
Initialize vec2 using a vector of floats.
Definition helios_vector_types.h:375
+
helios::vec2::operator-=
vec2 & operator-=(const vec2 &a)
Decrement vec2 vector.
Definition helios_vector_types.h:451
+
helios::vec2::operator<<
friend std::ostream & operator<<(std::ostream &os, const helios::vec2 &vec)
Write vec2 to output stream.
Definition helios_vector_types.h:414
+
helios::vec2::vec2
vec2(const float v[2])
Initialize vec2 using an array of floats.
Definition helios_vector_types.h:383
helios::vec2::x
float x
First element in vector.
Definition helios_vector_types.h:350
-
helios::vec2::operator/
vec2 operator/(float a) const
Divide each element by scalar (scalar is divided on right: vec2/a)
Definition helios_vector_types.h:484
-
helios::vec2::vec2
vec2()
Default constructor.
Definition helios_vector_types.h:371
-
helios::vec2::operator==
bool operator==(const vec2 &a) const
check for equality of two vec2 vectors
Definition helios_vector_types.h:488
-
helios::vec2::operator+
vec2 operator+(const vec2 &a) const
Sum of two vec2 vectors.
Definition helios_vector_types.h:440
+
helios::vec2::operator/
vec2 operator/(float a) const
Divide each element by scalar (scalar is divided on right: vec2/a)
Definition helios_vector_types.h:485
+
helios::vec2::vec2
vec2()
Default constructor.
Definition helios_vector_types.h:372
+
helios::vec2::operator==
bool operator==(const vec2 &a) const
check for equality of two vec2 vectors
Definition helios_vector_types.h:489
+
helios::vec2::operator+
vec2 operator+(const vec2 &a) const
Sum of two vec2 vectors.
Definition helios_vector_types.h:441
helios::vec2::y
float y
Second element in vector.
Definition helios_vector_types.h:352
-
helios::vec2::normalize
void normalize()
Normalize vector components such that the magnitude is unity.
Definition helios_vector_types.h:355
-
helios::vec2::operator-
vec2 operator-() const
Multiply each element by -1.
Definition helios_vector_types.h:496
-
helios::vec2::vec2
vec2(float v0, float v1)
Initialize vec2 using two floats.
Definition helios_vector_types.h:385
-
helios::vec2::operator*
float operator*(const vec2 &a) const
Dot (scalar) product of two vec2 vectors.
Definition helios_vector_types.h:436
-
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:502
-
helios::vec3::operator==
bool operator==(const vec3 &a) const
check for equality of two vec3 vectors
Definition helios_vector_types.h:655
-
helios::vec3::operator/
vec3 operator/(float a) const
Divide each element by scalar (scalar is divided on right: vec3/a)
Definition helios_vector_types.h:651
-
helios::vec3::operator+
vec3 operator+(const vec3 &a) const
Sum of two vec3 vectors.
Definition helios_vector_types.h:605
-
helios::vec3::operator-=
vec3 & operator-=(const vec3 &a)
Decrement vec3 vector.
Definition helios_vector_types.h:616
-
helios::vec3::operator-
vec3 operator-() const
Multiply vector by -1.
Definition helios_vector_types.h:663
-
helios::vec3::vec3
vec3(const float v[3])
Initialize vec3 using an array of floats.
Definition helios_vector_types.h:542
-
helios::vec3::x
float x
First element in vector.
Definition helios_vector_types.h:506
-
helios::vec3::z
float z
Third element in vector.
Definition helios_vector_types.h:510
-
helios::vec3::operator<<
friend std::ostream & operator<<(std::ostream &os, const helios::vec3 &vec)
Write vec3 to output stream.
Definition helios_vector_types.h:573
-
helios::vec3::vec3
vec3()
Default constructor.
Definition helios_vector_types.h:530
-
helios::vec3::normalize
void normalize()
Normalize vector components such that the magnitude is unity.
Definition helios_vector_types.h:513
-
helios::vec3::vec3
vec3(float v0, float v1, float v2)
Initialize vec3 using three floats.
Definition helios_vector_types.h:545
-
helios::vec3::operator+=
vec3 & operator+=(const vec3 &a)
Increment vec3 vector.
Definition helios_vector_types.h:609
-
helios::vec3::y
float y
Second element in vector.
Definition helios_vector_types.h:508
-
helios::vec3::vec3
vec3(const std::vector< float > &v)
Initialize vec3 using a vector of floats.
Definition helios_vector_types.h:533
-
helios::vec3::operator!=
bool operator!=(const vec3 &a) const
check for inequality of two vec3 vectors
Definition helios_vector_types.h:659
-
helios::vec3::magnitude
float magnitude() const
Compute the vector magnitude.
Definition helios_vector_types.h:524
-
helios::vec3::operator*
float operator*(const vec3 &a) const
Dot (scalar) product of two vec3 vectors.
Definition helios_vector_types.h:601
-
helios::vec4
Vector of four elements of type 'float'.
Definition helios_vector_types.h:671
-
helios::vec4::operator+
vec4 operator+(const vec4 &a) const
Sum of two vec4 vectors.
Definition helios_vector_types.h:773
-
helios::vec4::vec4
vec4(const std::vector< float > &v)
Initialize vec4 using a vector of floats.
Definition helios_vector_types.h:705
-
helios::vec4::operator<<
friend std::ostream & operator<<(std::ostream &os, const helios::vec4 &vec)
Write vec4 to output stream.
Definition helios_vector_types.h:746
-
helios::vec4::y
float y
Second element in vector.
Definition helios_vector_types.h:677
-
helios::vec4::magnitude
float magnitude() const
Compute the vector magnitude.
Definition helios_vector_types.h:696
-
helios::vec4::operator-=
vec4 & operator-=(const vec4 &a)
Decrement vec4 vector.
Definition helios_vector_types.h:785
-
helios::vec4::w
float w
Fourth element in vector.
Definition helios_vector_types.h:681
-
helios::vec4::operator!=
bool operator!=(const vec4 &a) const
check for equality of two vec4 vectors
Definition helios_vector_types.h:829
-
helios::vec4::operator-
vec4 operator-() const
Multiply each element by -1.
Definition helios_vector_types.h:833
-
helios::vec4::z
float z
Third element in vector.
Definition helios_vector_types.h:679
-
helios::vec4::operator+=
vec4 & operator+=(const vec4 &a)
Increment vec4 vector.
Definition helios_vector_types.h:777
-
helios::vec4::vec4
vec4()
Default constructor.
Definition helios_vector_types.h:702
-
helios::vec4::x
float x
First element in vector.
Definition helios_vector_types.h:675
-
helios::vec4::normalize
void normalize()
Normalize vector components such that the magnitude is unity.
Definition helios_vector_types.h:684
-
helios::vec4::operator/
vec4 operator/(float a) const
Divide each element by scalar (scalar is divided on right: vec4/a)
Definition helios_vector_types.h:821
-
helios::vec4::operator==
bool operator==(const vec4 &a) const
check for equality of two vec4 vectors
Definition helios_vector_types.h:825
-
helios::vec4::vec4
vec4(const float v[4])
Initialize vec3 using an array of floats.
Definition helios_vector_types.h:715
-
helios::vec4::operator*
float operator*(const vec4 &a) const
Dot (scalar) product of two vec4 vectors.
Definition helios_vector_types.h:769
-
helios::vec4::vec4
vec4(float v0, float v1, float v2, float v3)
Initialize vec4 using four floats.
Definition helios_vector_types.h:718
+
helios::vec2::operator-
vec2 operator-() const
Multiply each element by -1.
Definition helios_vector_types.h:497
+
helios::vec2::vec2
vec2(float v0, float v1)
Initialize vec2 using two floats.
Definition helios_vector_types.h:386
+
helios::vec2::operator*
float operator*(const vec2 &a) const
Dot (scalar) product of two vec2 vectors.
Definition helios_vector_types.h:437
+
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:503
+
helios::vec3::operator==
bool operator==(const vec3 &a) const
check for equality of two vec3 vectors
Definition helios_vector_types.h:657
+
helios::vec3::operator/
vec3 operator/(float a) const
Divide each element by scalar (scalar is divided on right: vec3/a)
Definition helios_vector_types.h:653
+
helios::vec3::operator+
vec3 operator+(const vec3 &a) const
Sum of two vec3 vectors.
Definition helios_vector_types.h:607
+
helios::vec3::operator-=
vec3 & operator-=(const vec3 &a)
Decrement vec3 vector.
Definition helios_vector_types.h:618
+
helios::vec3::operator-
vec3 operator-() const
Multiply vector by -1.
Definition helios_vector_types.h:665
+
helios::vec3::vec3
vec3(const float v[3])
Initialize vec3 using an array of floats.
Definition helios_vector_types.h:544
+
helios::vec3::normalize
vec3 normalize()
Normalize vector components such that the magnitude is unity.
Definition helios_vector_types.h:514
+
helios::vec3::x
float x
First element in vector.
Definition helios_vector_types.h:507
+
helios::vec3::z
float z
Third element in vector.
Definition helios_vector_types.h:511
+
helios::vec3::operator<<
friend std::ostream & operator<<(std::ostream &os, const helios::vec3 &vec)
Write vec3 to output stream.
Definition helios_vector_types.h:575
+
helios::vec3::vec3
vec3()
Default constructor.
Definition helios_vector_types.h:532
+
helios::vec3::vec3
vec3(float v0, float v1, float v2)
Initialize vec3 using three floats.
Definition helios_vector_types.h:547
+
helios::vec3::operator+=
vec3 & operator+=(const vec3 &a)
Increment vec3 vector.
Definition helios_vector_types.h:611
+
helios::vec3::y
float y
Second element in vector.
Definition helios_vector_types.h:509
+
helios::vec3::vec3
vec3(const std::vector< float > &v)
Initialize vec3 using a vector of floats.
Definition helios_vector_types.h:535
+
helios::vec3::operator!=
bool operator!=(const vec3 &a) const
check for inequality of two vec3 vectors
Definition helios_vector_types.h:661
+
helios::vec3::magnitude
float magnitude() const
Compute the vector magnitude.
Definition helios_vector_types.h:526
+
helios::vec3::operator*
float operator*(const vec3 &a) const
Dot (scalar) product of two vec3 vectors.
Definition helios_vector_types.h:603
+
helios::vec4
Vector of four elements of type 'float'.
Definition helios_vector_types.h:673
+
helios::vec4::operator+
vec4 operator+(const vec4 &a) const
Sum of two vec4 vectors.
Definition helios_vector_types.h:776
+
helios::vec4::vec4
vec4(const std::vector< float > &v)
Initialize vec4 using a vector of floats.
Definition helios_vector_types.h:708
+
helios::vec4::operator<<
friend std::ostream & operator<<(std::ostream &os, const helios::vec4 &vec)
Write vec4 to output stream.
Definition helios_vector_types.h:749
+
helios::vec4::y
float y
Second element in vector.
Definition helios_vector_types.h:679
+
helios::vec4::magnitude
float magnitude() const
Compute the vector magnitude.
Definition helios_vector_types.h:699
+
helios::vec4::operator-=
vec4 & operator-=(const vec4 &a)
Decrement vec4 vector.
Definition helios_vector_types.h:788
+
helios::vec4::w
float w
Fourth element in vector.
Definition helios_vector_types.h:683
+
helios::vec4::operator!=
bool operator!=(const vec4 &a) const
check for equality of two vec4 vectors
Definition helios_vector_types.h:832
+
helios::vec4::operator-
vec4 operator-() const
Multiply each element by -1.
Definition helios_vector_types.h:836
+
helios::vec4::z
float z
Third element in vector.
Definition helios_vector_types.h:681
+
helios::vec4::normalize
vec4 normalize()
Normalize vector components such that the magnitude is unity.
Definition helios_vector_types.h:686
+
helios::vec4::operator+=
vec4 & operator+=(const vec4 &a)
Increment vec4 vector.
Definition helios_vector_types.h:780
+
helios::vec4::vec4
vec4()
Default constructor.
Definition helios_vector_types.h:705
+
helios::vec4::x
float x
First element in vector.
Definition helios_vector_types.h:677
+
helios::vec4::operator/
vec4 operator/(float a) const
Divide each element by scalar (scalar is divided on right: vec4/a)
Definition helios_vector_types.h:824
+
helios::vec4::operator==
bool operator==(const vec4 &a) const
check for equality of two vec4 vectors
Definition helios_vector_types.h:828
+
helios::vec4::vec4
vec4(const float v[4])
Initialize vec3 using an array of floats.
Definition helios_vector_types.h:718
+
helios::vec4::operator*
float operator*(const vec4 &a) const
Dot (scalar) product of two vec4 vectors.
Definition helios_vector_types.h:772
+
helios::vec4::vec4
vec4(float v0, float v1, float v2, float v3)
Initialize vec4 using four floats.
Definition helios_vector_types.h:721
diff --git a/doc/html/hierarchy.html b/doc/html/hierarchy.html index 8265dcb98..08383e175 100644 --- a/doc/html/hierarchy.html +++ b/doc/html/hierarchy.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
@@ -101,14 +101,28 @@
This inheritance list is sorted roughly, but not completely, alphabetically:
-
[detail level 12]
+
[detail level 123]
- - - + + + + + + + + + + + + + + + + + @@ -124,79 +138,67 @@ - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
 CAerialHitPointStructure containing metadata for an aerial hit point
 CAerialLiDARcloudPrimary class for aerial LiDAR scan
 CAerialScanMetadataStructure containing metadata for an aerial scan
 CAxisRotation
 CBBcoefficientsCoefficients for simplified Bailey stomatal conductance model
 CBBLcoefficientsCoefficients for Ball, Berry, Leuning (Leuning 1990, 1995) stomatal conductance model
 CBeanParametersParameters defining the bean plant canopy
 ▼CBaseCanopyParametersBase struct class for Canopy parameters
 ▼CBaseGrapeVineParameters
 CGobletGrapevineParametersParameters defining the grapevine canopy with goblet (vent a taille) trellis
 CSplitGrapevineParametersParameters defining the grapevine canopy with a split (quad) trellis
 CUnilateralGrapevineParametersParameters defining the grapevine canopy with unilateral trellis
 CVSPGrapevineParametersParameters defining the grapevine canopy with vertical shoot positioned (VSP) trellis
 CBeanParametersParameters defining the bean plant canopy
 CConicalCrownsCanopyParametersParameters defining the canopy with conical crowns
 CHomogeneousCanopyParametersParameters defining the homogeneous canopy
 CSorghumCanopyParametersParameters defining Sorghum plant canopy
 CSphericalCrownsCanopyParametersParameters defining the canopy with spherical crowns
 CStrawberryParametersParameters defining the strawberry plant canopy
 CTomatoParametersParameters defining the tomato plant canopy
 CWalnutCanopyParametersParameters defining the walnut tree canopy
 CWhiteSpruceCanopyParametersParameters defining the white spruce
 CBBcoefficientsCoefficients for simplified Bailey stomatal conductance model
 CBBLcoefficientsCoefficients for Ball, Berry, Leuning (Leuning 1990, 1995) stomatal conductance model
 CBLConductanceModelBoundary-layer conductance model class
 CBMFcoefficientsCoefficients for simplified Buckley, Mott, & Farquhar stomatal conductance model
 CBWBcoefficientsCoefficients for original Ball, Woodrow, Berry (1987) stomatal conductance model
 Chelios::SphereSphere compound object class
 Chelios::TileTile compound object class
 Chelios::TubeTube compound object class
 CConicalCrownsCanopyParametersParameters defining the canopy with conical crowns
 Chelios::ContextStores the state associated with simulation
 Chelios::DateDate vector
 CDummyModelDummy model class
 CDupex
 CEmpiricalModelCoefficients
 CEnergyBalanceModelEnergy balance model class
 CFarquharModelCoefficients
 CFloralBud
 Chelios::GlobalDataStructure for Global Data Entities
 CGlyphGlyph object - 2D matrix shape
 CGobletGrapevineParametersParameters defining the grapevine canopy with goblet (vent a taille) trellis
 CCameraCalibration::GradientDescentParametersParameter struct for gradient descent
 CGridCell
 CHitPoint
 CHitTable< datatype >
 CHomogeneousCanopyParametersParameters defining the homogeneous canopy
 Chelios::int2Vector of two elements of type 'int'
 Chelios::int3Vector of three elements of type 'int'
 Chelios::int4Vector of four elements of type 'int'
 Cjpg_error_mgr
 CLeafOptics
 CLeafOpticsPropertiesLeafOptics model class
 CLiDARcloudPrimary class for terrestrial LiDAR scan
 CMOPTcoefficientsCoefficients for optimality-based Medlyn et al. (2011) stomatal conductance model
 Cmy_error_mgr
 CPerRayData
 CPhotosynthesisModel
 CPhotosyntheticTemperatureResponseParameters
 CPhytomer
 CPhytomerParameters
 CPlantArchitecture
 CPlantInstance
 CRadiationBandProperties defining a radiation band
 CRadiationCameraData object for a radiation camera
 CRadiationModelRadiation transport model plugin
 CRadiationSourceRadiation source data object
 CRandomParameter_float
 CRandomParameter_int
 Chelios::RGBAcolorR-G-B-A color vector
 Chelios::RGBcolorR-G-B color vector
 CScanMetadataStructure containing metadata for a terrestrial scan
 CShaderOpenGL Shader data structure
 CShoot
 CShootParameters
 CShx
 CSolarPosition
 CSorghumCanopyParametersParameters defining Sorghum plant canopy
 Chelios::SphericalCoordVector of spherical coordinates (elevation,azimuth)
 CSphericalCrownsCanopyParametersParameters defining the canopy with spherical crowns
 CSplitGrapevineParametersParameters defining the grapevine canopy with a split (quad) trellis
 CStomatalConductanceModel
 CStrawberryParametersParameters defining the strawberry plant canopy
 CSyntheticAnnotation
 Chelios::TextureTexture map data structure
 Chelios::TimeTime vector
 Chelios::TimerMATLAB-style timer. Call tic() to start timer, call toc() to stop timer and print duration
 CTomatoParametersParameters defining the tomato plant canopy
 CTriad
 CTriangulation
 CUnilateralGrapevineParametersParameters defining the grapevine canopy with unilateral trellis
 Chelios::vec2Vector of two elements of type 'float'
 Chelios::vec3Vector of three elements of type 'float'
 Chelios::vec4Vector of four elements of type 'float'
 CVegetativeBud
 CVisualizerClass for visualization of simulation results
 CVoxelIntersection
 CVSPGrapevineParametersParameters defining the grapevine canopy with vertical shoot positioned (VSP) trellis
 CWalnutCanopyParametersParameters defining the walnut tree canopy
 CWeberPennTree
 CWeberPennTreeParameters
 CWhiteSpruceCanopyParametersParameters defining the white spruce
 Chelios::XMLparserClass for parsing XML input files
 Chelios::ContextStores the state associated with simulation
 Chelios::DateDate vector
 CDummyModelDummy model class
 CDupex
 CEmpiricalModelCoefficients
 CEnergyBalanceModelEnergy balance model class
 CFarquharModelCoefficients
 CFloralBud
 Chelios::GlobalDataStructure for Global Data Entities
 CGlyphGlyph object - 2D matrix shape
 CCameraCalibration::GradientDescentParametersParameter struct for gradient descent
 CGridCell
 CHitPoint
 CHitTable< datatype >
 Chelios::int2Vector of two elements of type 'int'
 Chelios::int3Vector of three elements of type 'int'
 Chelios::int4Vector of four elements of type 'int'
 Cjpg_error_mgr
 CLeafOptics
 CLeafOpticsPropertiesLeafOptics model class
 CLiDARcloudPrimary class for terrestrial LiDAR scan
 CMOPTcoefficientsCoefficients for optimality-based Medlyn et al. (2011) stomatal conductance model
 Cmy_error_mgr
 CPerRayData
 CPhotosynthesisModel
 CPhotosyntheticTemperatureResponseParameters
 CPhytomer
 CPhytomerParameters
 CPlantArchitecture
 CPlantInstance
 CRadiationBandProperties defining a radiation band
 CRadiationCameraData object for a radiation camera
 CRadiationModelRadiation transport model plugin
 CRadiationSourceRadiation source data object
 CRandomParameter_float
 CRandomParameter_int
 Chelios::RGBAcolorR-G-B-A color vector
 Chelios::RGBcolorR-G-B color vector
 CScanMetadataStructure containing metadata for a terrestrial scan
 CShaderOpenGL Shader data structure
 CShoot
 CShootParameters
 CShx
 CSolarPosition
 Chelios::SphericalCoordVector of spherical coordinates (elevation,azimuth)
 CStomatalConductanceModel
 CSyntheticAnnotation
 Chelios::TextureTexture map data structure
 Chelios::TimeTime vector
 Chelios::TimerMATLAB-style timer. Call tic() to start timer, call toc() to stop timer and print duration
 CTriad
 CTriangulation
 Chelios::vec2Vector of two elements of type 'float'
 Chelios::vec3Vector of three elements of type 'float'
 Chelios::vec4Vector of four elements of type 'float'
 CVegetativeBud
 CVisualizerClass for visualization of simulation results
 CVoxelIntersection
 CWeberPennTree
 CWeberPennTreeParameters
 Chelios::XMLparserClass for parsing XML input files
diff --git a/doc/html/index.html b/doc/html/index.html index d10edbcc7..e6acd74d9 100644 --- a/doc/html/index.html +++ b/doc/html/index.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
@@ -97,7 +97,7 @@
-
Helios Documentation v1.3.19
+
Helios Documentation v1.3.20


diff --git a/doc/html/lidar_2include_2random_8h_source.html b/doc/html/lidar_2include_2random_8h_source.html index c9daa1621..bdab370fd 100644 --- a/doc/html/lidar_2include_2random_8h_source.html +++ b/doc/html/lidar_2include_2random_8h_source.html @@ -38,7 +38,7 @@ Logo -

 v1.3.19 +
 v1.3.20
diff --git a/doc/html/lidar_2src_2file_i_o_8cpp.html b/doc/html/lidar_2src_2file_i_o_8cpp.html index 85ef66bbe..75edfc1c3 100644 --- a/doc/html/lidar_2src_2file_i_o_8cpp.html +++ b/doc/html/lidar_2src_2file_i_o_8cpp.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
diff --git a/doc/html/lidar_2src_2file_i_o_8cpp_source.html b/doc/html/lidar_2src_2file_i_o_8cpp_source.html index 1e3e2a0da..297b66f4c 100644 --- a/doc/html/lidar_2src_2file_i_o_8cpp_source.html +++ b/doc/html/lidar_2src_2file_i_o_8cpp_source.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
@@ -612,7 +612,7 @@
515 vec3 v2 = tri.vertex2;
516
517 vec3 normal = cross( v1-v0, v2-v0 );
-
518 normal.normalize();
+
518 normal.normalize();
519
520 file << normal.x << " " << normal.y << " " << normal.z << std::endl;
521
@@ -645,7 +645,7 @@
546 vec3 v2 = tri.vertex2;
547
548 vec3 normal = cross( v1-v0, v2-v0 );
-
549 normal.normalize();
+
549 normal.normalize();
550
551 file << normal.x << " " << normal.y << " " << normal.z << std::endl;
552
@@ -736,7 +736,7 @@
631 vec3 v2 = tri.vertex2;
632
633 vec3 normal = cross( v1-v0, v2-v0 );
-
634 normal.normalize();
+
634 normal.normalize();
635
636 float angle = acos_safe(fabs(normal.z));
637
@@ -1076,25 +1076,25 @@
helios::string2vec3
vec3 string2vec3(const char *str)
Convert a space-delimited string into a vec3 vector.
Definition global.cpp:643
helios::acos_safe
float acos_safe(float x)
arccosine function to handle cases when round-off errors cause an argument <-1 or >1,...
Definition global.cpp:241
helios::deblank
std::string deblank(const char *input)
Remove all whitespace from character array.
Definition global.cpp:912
-
helios::make_RGBcolor
RGBcolor make_RGBcolor(float r, float g, float b)
Make an RGBcolor vector.
Definition helios_vector_types.h:951
+
helios::make_RGBcolor
RGBcolor make_RGBcolor(float r, float g, float b)
Make an RGBcolor vector.
Definition helios_vector_types.h:954
helios::make_int3
int3 make_int3(int X, int Y, int Z)
Make an int3 vector from three ints.
Definition helios_vector_types.h:198
-
helios::make_vec3
vec3 make_vec3(float x, float y, float z)
Make a vec3 from three floats.
Definition helios_vector_types.h:587
-
helios::cross
vec3 cross(const vec3 &a, const vec3 &b)
Cross product of two vec3 vectors.
Definition helios_vector_types.h:597
-
helios::make_vec4
vec4 make_vec4(float x, float y, float z, float w)
Make a vec4 from three floats.
Definition helios_vector_types.h:760
-
helios::make_SphericalCoord
SphericalCoord make_SphericalCoord(float elevation_radians, float azimuth_radians)
Make a SphericalCoord by specifying elevation and azimuth.
Definition helios_vector_types.h:1536
+
helios::make_vec3
vec3 make_vec3(float x, float y, float z)
Make a vec3 from three floats.
Definition helios_vector_types.h:589
+
helios::cross
vec3 cross(const vec3 &a, const vec3 &b)
Cross product of two vec3 vectors.
Definition helios_vector_types.h:599
+
helios::make_vec4
vec4 make_vec4(float x, float y, float z, float w)
Make a vec4 from three floats.
Definition helios_vector_types.h:763
+
helios::make_SphericalCoord
SphericalCoord make_SphericalCoord(float elevation_radians, float azimuth_radians)
Make a SphericalCoord by specifying elevation and azimuth.
Definition helios_vector_types.h:1539
ScanMetadata
Structure containing metadata for a terrestrial scan.
Definition LiDAR.h:188
ScanMetadata::origin
helios::vec3 origin
(x,y,z) coordinate of scanner location
Definition LiDAR.h:235
ScanMetadata::data_file
std::string data_file
File containing hit point data.
Definition LiDAR.h:206
ScanMetadata::columnFormat
std::vector< std::string > columnFormat
Vector of strings specifying the columns of the scan ASCII file for input/output.
Definition LiDAR.h:250
-
helios::RGBcolor
R-G-B color vector.
Definition helios_vector_types.h:841
-
helios::RGBcolor::b
float b
Blue color component.
Definition helios_vector_types.h:852
-
helios::RGBcolor::r
float r
Red color component.
Definition helios_vector_types.h:846
-
helios::RGBcolor::g
float g
Green color component.
Definition helios_vector_types.h:849
-
helios::SphericalCoord
Vector of spherical coordinates (elevation,azimuth)
Definition helios_vector_types.h:1468
-
helios::SphericalCoord::zenith
const float & zenith
Zenithal angle (radians)
Definition helios_vector_types.h:1487
-
helios::SphericalCoord::elevation
const float & elevation
Elevation angle (radians)
Definition helios_vector_types.h:1482
-
helios::SphericalCoord::azimuth
float azimuth
Azimuthal angle (radians)
Definition helios_vector_types.h:1489
+
helios::RGBcolor
R-G-B color vector.
Definition helios_vector_types.h:844
+
helios::RGBcolor::b
float b
Blue color component.
Definition helios_vector_types.h:855
+
helios::RGBcolor::r
float r
Red color component.
Definition helios_vector_types.h:849
+
helios::RGBcolor::g
float g
Green color component.
Definition helios_vector_types.h:852
+
helios::SphericalCoord
Vector of spherical coordinates (elevation,azimuth)
Definition helios_vector_types.h:1471
+
helios::SphericalCoord::zenith
const float & zenith
Zenithal angle (radians)
Definition helios_vector_types.h:1490
+
helios::SphericalCoord::elevation
const float & elevation
Elevation angle (radians)
Definition helios_vector_types.h:1485
+
helios::SphericalCoord::azimuth
float azimuth
Azimuthal angle (radians)
Definition helios_vector_types.h:1492
helios::int2
Vector of two elements of type 'int'.
Definition helios_vector_types.h:44
helios::int2::y
int y
Second element in vector.
Definition helios_vector_types.h:50
helios::int2::x
int x
First element in vector.
Definition helios_vector_types.h:48
@@ -1102,12 +1102,12 @@
helios::vec2
Vector of two elements of type 'float'.
Definition helios_vector_types.h:346
helios::vec2::x
float x
First element in vector.
Definition helios_vector_types.h:350
helios::vec2::y
float y
Second element in vector.
Definition helios_vector_types.h:352
-
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:502
-
helios::vec3::x
float x
First element in vector.
Definition helios_vector_types.h:506
-
helios::vec3::z
float z
Third element in vector.
Definition helios_vector_types.h:510
-
helios::vec3::normalize
void normalize()
Normalize vector components such that the magnitude is unity.
Definition helios_vector_types.h:513
-
helios::vec3::y
float y
Second element in vector.
Definition helios_vector_types.h:508
-
helios::vec3::magnitude
float magnitude() const
Compute the vector magnitude.
Definition helios_vector_types.h:524
+
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:503
+
helios::vec3::normalize
vec3 normalize()
Normalize vector components such that the magnitude is unity.
Definition helios_vector_types.h:514
+
helios::vec3::x
float x
First element in vector.
Definition helios_vector_types.h:507
+
helios::vec3::z
float z
Third element in vector.
Definition helios_vector_types.h:511
+
helios::vec3::y
float y
Second element in vector.
Definition helios_vector_types.h:509
+
helios::vec3::magnitude
float magnitude() const
Compute the vector magnitude.
Definition helios_vector_types.h:526
diff --git a/doc/html/main_8cpp_source.html b/doc/html/main_8cpp_source.html index 7162c9d9f..7581a9d25 100644 --- a/doc/html/main_8cpp_source.html +++ b/doc/html/main_8cpp_source.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
@@ -202,20 +202,20 @@
helios::Context::scalePrimitiveData
void scalePrimitiveData(const std::vector< uint > &UUIDs, const std::string &label, float scaling_factor)
Multiply primitive data values by a constant scaling factor for a subset of primitives.
Definition Context_data.cpp:1747
helios::Context::loadPLY
std::vector< uint > loadPLY(const char *filename, bool silent=false)
Load geometry contained in a Stanford polygon file (.ply). Model will be placed at the origin with no...
Definition Context_fileIO.cpp:3370
helios::Context::loadTabularTimeseriesData
void loadTabularTimeseriesData(const std::string &data_file, const std::vector< std::string > &column_labels, const std::string &delimiter, const std::string &date_string_format="YYYYMMDD", uint headerlines=0)
Load tabular weather data from text file into timeseries.
Definition Context_fileIO.cpp:4544
-
helios::Context::setDate
void setDate(int day, int month, int year)
Set simulation date by day, month, year.
Definition Context.cpp:1062
-
helios::Context::getTime
helios::Time getTime() const
Get the simulation time.
Definition Context.cpp:1169
+
helios::Context::setDate
void setDate(int day, int month, int year)
Set simulation date by day, month, year.
Definition Context.cpp:1057
+
helios::Context::getTime
helios::Time getTime() const
Get the simulation time.
Definition Context.cpp:1164
helios::Context::duplicatePrimitiveData
void duplicatePrimitiveData(uint UUID, const char *old_label, const char *new_label)
Duplicate/copy primitive data.
Definition Context_data.cpp:1229
-
helios::Context::getDate
helios::Date getDate() const
Get simulation date.
Definition Context.cpp:1102
-
helios::Context::getAllUUIDs
std::vector< uint > getAllUUIDs() const
Get all primitive UUIDs currently in the Context.
Definition Context.cpp:1758
+
helios::Context::getDate
helios::Date getDate() const
Get simulation date.
Definition Context.cpp:1097
+
helios::Context::getAllUUIDs
std::vector< uint > getAllUUIDs() const
Get all primitive UUIDs currently in the Context.
Definition Context.cpp:1753
helios::Context::setPrimitiveData
void setPrimitiveData(const uint &UUID, const char *label, const int &data)
Add data value (int) associated with a primitive element.
Definition Context_data.cpp:655
-
helios::Context::setTime
void setTime(int minute, int hour)
Set simulation time.
Definition Context.cpp:1139
-
helios::Context::addTile
std::vector< uint > addTile(const vec3 &center, const vec2 &size, const SphericalCoord &rotation, const int2 &subdiv)
Add a patch that is subdivided into a regular grid of sub-patches (tiled)
Definition Context.cpp:5686
+
helios::Context::setTime
void setTime(int minute, int hour)
Set simulation time.
Definition Context.cpp:1134
+
helios::Context::addTile
std::vector< uint > addTile(const vec3 &center, const vec2 &size, const SphericalCoord &rotation, const int2 &subdiv)
Add a patch that is subdivided into a regular grid of sub-patches (tiled)
Definition Context.cpp:5753
helios::wait
void wait(float seconds)
Wait/sleep for a specified amount of time.
Definition global.cpp:306
-
helios::Context::setCurrentTimeseriesPoint
void setCurrentTimeseriesPoint(const char *label, uint index)
Set the Context date and time by providing the index of a timeseries data point.
Definition Context.cpp:1881
-
helios::Context::queryTimeseriesData
float queryTimeseriesData(const char *label, const Date &date, const Time &time) const
Get a timeseries data point by specifying a date and time vector.
Definition Context.cpp:1889
+
helios::Context::setCurrentTimeseriesPoint
void setCurrentTimeseriesPoint(const char *label, uint index)
Set the Context date and time by providing the index of a timeseries data point.
Definition Context.cpp:1876
+
helios::Context::queryTimeseriesData
float queryTimeseriesData(const char *label, const Date &date, const Time &time) const
Get a timeseries data point by specifying a date and time vector.
Definition Context.cpp:1884
helios::make_int2
int2 make_int2(int x, int y)
Make an int2 vector from two ints.
Definition helios_vector_types.h:99
-
helios::make_vec2
vec2 make_vec2(float x, float y)
Make a vec2 from two floats.
Definition helios_vector_types.h:432
-
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:502
+
helios::make_vec2
vec2 make_vec2(float x, float y)
Make a vec2 from two floats.
Definition helios_vector_types.h:433
+
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:503
diff --git a/doc/html/pages.html b/doc/html/pages.html index ee4d64a80..9ce8e6376 100644 --- a/doc/html/pages.html +++ b/doc/html/pages.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
diff --git a/doc/html/plugins_2lidar_2src_2self_test_8cpp.html b/doc/html/plugins_2lidar_2src_2self_test_8cpp.html index 6549fde96..a8f4bbca7 100644 --- a/doc/html/plugins_2lidar_2src_2self_test_8cpp.html +++ b/doc/html/plugins_2lidar_2src_2self_test_8cpp.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
diff --git a/doc/html/plugins_2lidar_2src_2self_test_8cpp_source.html b/doc/html/plugins_2lidar_2src_2self_test_8cpp_source.html index 8df918bcf..88bb2c30a 100644 --- a/doc/html/plugins_2lidar_2src_2self_test_8cpp_source.html +++ b/doc/html/plugins_2lidar_2src_2self_test_8cpp_source.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
@@ -320,7 +320,7 @@
227 float area = context_4.getPrimitiveArea(p);
228 vec3 normal = context_4.getPrimitiveNormal(p);
229 vec3 raydir = vertices.front()-origin;
-
230 raydir.normalize();
+
230 raydir.normalize();
231 float theta = fabs(acos_safe(raydir.z));
232
233 if( area==area ){ //in rare cases you can get area=NaN
@@ -403,22 +403,22 @@
LiDARcloud::calculateLeafAreaGPU
void calculateLeafAreaGPU()
Calculate the leaf area for each grid volume.
Definition LiDAR.cu:897
helios::Context
Stores the state associated with simulation.
Definition Context.h:1882
helios::Context::loadXML
std::vector< uint > loadXML(const char *filename, bool quiet=false)
Load inputs specified in an XML file.
Definition Context_fileIO.cpp:1217
-
helios::Context::getPrimitiveArea
float getPrimitiveArea(uint UUID) const
Method to return the surface area of a Primitive.
Definition Context.cpp:6930
+
helios::Context::getPrimitiveArea
float getPrimitiveArea(uint UUID) const
Method to return the surface area of a Primitive.
Definition Context.cpp:6997
helios::Context::getPrimitiveData
void getPrimitiveData(uint UUID, const char *label, int &data) const
Get data associated with a primitive element.
Definition Context_data.cpp:1001
helios::Context::doesPrimitiveDataExist
bool doesPrimitiveDataExist(uint UUID, const char *label) const
Check if primitive data 'label' exists.
Definition Context_data.cpp:1169
helios::Context::loadOBJ
std::vector< uint > loadOBJ(const char *filename, bool silent=false)
Load geometry contained in a Wavefront OBJ file (.obj). Model will be placed at the origin without an...
Definition Context_fileIO.cpp:3734
-
helios::Context::getAllUUIDs
std::vector< uint > getAllUUIDs() const
Get all primitive UUIDs currently in the Context.
Definition Context.cpp:1758
-
helios::Context::getPrimitiveNormal
helios::vec3 getPrimitiveNormal(uint UUID) const
Method to return the normal vector of a Primitive.
Definition Context.cpp:6981
-
helios::Context::getPrimitiveVertices
std::vector< helios::vec3 > getPrimitiveVertices(uint UUID) const
Method to return the (x,y,z) coordinates of the vertices of a Primitive.
Definition Context.cpp:6999
+
helios::Context::getAllUUIDs
std::vector< uint > getAllUUIDs() const
Get all primitive UUIDs currently in the Context.
Definition Context.cpp:1753
+
helios::Context::getPrimitiveNormal
helios::vec3 getPrimitiveNormal(uint UUID) const
Method to return the normal vector of a Primitive.
Definition Context.cpp:7048
+
helios::Context::getPrimitiveVertices
std::vector< helios::vec3 > getPrimitiveVertices(uint UUID) const
Method to return the (x,y,z) coordinates of the vertices of a Primitive.
Definition Context.cpp:7066
helios::acos_safe
float acos_safe(float x)
arccosine function to handle cases when round-off errors cause an argument <-1 or >1,...
Definition global.cpp:241
-
helios::Context::getPrimitiveCount
uint getPrimitiveCount() const
Get the total number of Primitives in the Context.
Definition Context.cpp:1754
-
helios::make_vec3
vec3 make_vec3(float x, float y, float z)
Make a vec3 from three floats.
Definition helios_vector_types.h:587
-
helios::make_SphericalCoord
SphericalCoord make_SphericalCoord(float elevation_radians, float azimuth_radians)
Make a SphericalCoord by specifying elevation and azimuth.
Definition helios_vector_types.h:1536
-
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:502
-
helios::vec3::x
float x
First element in vector.
Definition helios_vector_types.h:506
-
helios::vec3::z
float z
Third element in vector.
Definition helios_vector_types.h:510
-
helios::vec3::normalize
void normalize()
Normalize vector components such that the magnitude is unity.
Definition helios_vector_types.h:513
-
helios::vec3::y
float y
Second element in vector.
Definition helios_vector_types.h:508
+
helios::Context::getPrimitiveCount
uint getPrimitiveCount() const
Get the total number of Primitives in the Context.
Definition Context.cpp:1749
+
helios::make_vec3
vec3 make_vec3(float x, float y, float z)
Make a vec3 from three floats.
Definition helios_vector_types.h:589
+
helios::make_SphericalCoord
SphericalCoord make_SphericalCoord(float elevation_radians, float azimuth_radians)
Make a SphericalCoord by specifying elevation and azimuth.
Definition helios_vector_types.h:1539
+
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:503
+
helios::vec3::normalize
vec3 normalize()
Normalize vector components such that the magnitude is unity.
Definition helios_vector_types.h:514
+
helios::vec3::x
float x
First element in vector.
Definition helios_vector_types.h:507
+
helios::vec3::z
float z
Third element in vector.
Definition helios_vector_types.h:511
+
helios::vec3::y
float y
Second element in vector.
Definition helios_vector_types.h:509
diff --git a/doc/html/plugins_2plantarchitecture_2src_2self_test_8cpp.html b/doc/html/plugins_2plantarchitecture_2src_2self_test_8cpp.html index 4e280d172..c49721a70 100644 --- a/doc/html/plugins_2plantarchitecture_2src_2self_test_8cpp.html +++ b/doc/html/plugins_2plantarchitecture_2src_2self_test_8cpp.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
diff --git a/doc/html/plugins_2plantarchitecture_2src_2self_test_8cpp_source.html b/doc/html/plugins_2plantarchitecture_2src_2self_test_8cpp_source.html index ccbe2ecc9..94fcf7712 100644 --- a/doc/html/plugins_2plantarchitecture_2src_2self_test_8cpp_source.html +++ b/doc/html/plugins_2plantarchitecture_2src_2self_test_8cpp_source.html @@ -38,7 +38,7 @@ Logo -
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diff --git a/doc/html/plugins_2radiation_2src_2self_test_8cpp.html b/doc/html/plugins_2radiation_2src_2self_test_8cpp.html index de5b5d3c5..95eecfef4 100644 --- a/doc/html/plugins_2radiation_2src_2self_test_8cpp.html +++ b/doc/html/plugins_2radiation_2src_2self_test_8cpp.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
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diff --git a/doc/html/plugins_2radiation_2src_2self_test_8cpp_source.html b/doc/html/plugins_2radiation_2src_2self_test_8cpp_source.html index 03fb6e55f..b4121fd20 100644 --- a/doc/html/plugins_2radiation_2src_2self_test_8cpp_source.html +++ b/doc/html/plugins_2radiation_2src_2self_test_8cpp_source.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
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@@ -1868,49 +1868,49 @@
RadiationModel::setScatteringDepth
void setScatteringDepth(const std::string &label, uint depth)
Set the number of scattering iterations for a certain band.
Definition RadiationModel.cpp:1121
RadiationModel::disableEmission
void disableEmission(const std::string &label)
Disable emission calculations for all primitives in this band.
Definition RadiationModel.cpp:268
RadiationModel::setSourceSpectrum
void setSourceSpectrum(uint source_ID, const std::vector< helios::vec2 > &spectrum)
Set the spectral distribution of a radiation source according to a vector of wavelength-intensity pai...
Definition RadiationModel.cpp:556
-
RadiationModel::runBand
void runBand(const std::string &label)
Run the simulation for a single radiative band.
Definition RadiationModel.cpp:3102
+
RadiationModel::runBand
void runBand(const std::string &label)
Run the simulation for a single radiative band.
Definition RadiationModel.cpp:3098
RadiationModel::addSunSphereRadiationSource
uint addSunSphereRadiationSource()
Add a sphere radiation source that models the sun assuming the default direction of (0,...
Definition RadiationModel.cpp:362
RadiationModel::addDiskRadiationSource
uint addDiskRadiationSource(const helios::vec3 &position, float radius, const helios::vec3 &rotation)
Add planar circular radiation source.
Definition RadiationModel.cpp:430
RadiationModel::setDiffuseRadiationFlux
void setDiffuseRadiationFlux(const std::string &label, float flux)
Diffuse (ambient) radiation flux.
Definition RadiationModel.cpp:86
RadiationModel::setDiffuseRayCount
void setDiffuseRayCount(const std::string &label, size_t N)
Sets variable diffuseRayCount, the number of rays to be used in diffuse (ambient) radiation model.
Definition RadiationModel.cpp:79
RadiationModel::addRectangleRadiationSource
uint addRectangleRadiationSource(const helios::vec3 &position, const helios::vec2 &size, const helios::vec3 &rotation)
Add planar rectangular radiation source.
Definition RadiationModel.cpp:400
RadiationModel::setDiffuseRadiationExtinctionCoeff
void setDiffuseRadiationExtinctionCoeff(const std::string &label, float K, const helios::vec3 &peak_dir)
Extinction coefficient of diffuse ambient radiation.
Definition RadiationModel.cpp:97
-
RadiationModel::updateGeometry
void updateGeometry()
Adds all geometric primitives from the Context to OptiX.
Definition RadiationModel.cpp:1970
+
RadiationModel::updateGeometry
void updateGeometry()
Adds all geometric primitives from the Context to OptiX.
Definition RadiationModel.cpp:1966
RadiationModel::addRadiationBand
void addRadiationBand(const std::string &label)
Add a spectral radiation band to the model.
Definition RadiationModel.cpp:183
RadiationModel::addCollimatedRadiationSource
uint addCollimatedRadiationSource()
Add an external source of collimated radiation (i.e., source at infinite distance with parallel rays)...
Definition RadiationModel.cpp:288
RadiationModel::addRadiationCamera
void addRadiationCamera(const std::string &camera_label, const std::vector< std::string > &band_label, const helios::vec3 &position, const helios::vec3 &lookat, const CameraProperties &camera_properties, uint antialiasing_samples)
Add a radiation camera sensor.
Definition RadiationModel.cpp:1162
-
helios::CompoundObject::rotate
void rotate(float rotation_radians, const char *rotation_axis_xyz_string)
Method to rotate a Compound Object about the x-, y-, or z-axis.
Definition Context.cpp:2362
-
helios::CompoundObject::translate
void translate(const helios::vec3 &shift)
Method to translate/shift a Compound Object.
Definition Context.cpp:2338
-
helios::CompoundObject::getPrimitiveUUIDs
std::vector< uint > getPrimitiveUUIDs() const
Get the UUIDs for all primitives contained in the object.
Definition Context.cpp:2241
+
helios::CompoundObject::rotate
void rotate(float rotation_radians, const char *rotation_axis_xyz_string)
Method to rotate a Compound Object about the x-, y-, or z-axis.
Definition Context.cpp:2357
+
helios::CompoundObject::translate
void translate(const helios::vec3 &shift)
Method to translate/shift a Compound Object.
Definition Context.cpp:2333
+
helios::CompoundObject::getPrimitiveUUIDs
std::vector< uint > getPrimitiveUUIDs() const
Get the UUIDs for all primitives contained in the object.
Definition Context.cpp:2236
helios::Context
Stores the state associated with simulation.
Definition Context.h:1882
-
helios::Context::copyObject
uint copyObject(uint ObjID)
Make a copy of a Compound Objects from the context.
Definition Context.cpp:2627
-
helios::Context::translatePrimitive
void translatePrimitive(uint UUID, const vec3 &shift)
Translate a primitive using its UUID.
Definition Context.cpp:1401
-
helios::Context::getPrimitiveArea
float getPrimitiveArea(uint UUID) const
Method to return the surface area of a Primitive.
Definition Context.cpp:6930
+
helios::Context::copyObject
uint copyObject(uint ObjID)
Make a copy of a Compound Objects from the context.
Definition Context.cpp:2622
+
helios::Context::translatePrimitive
void translatePrimitive(uint UUID, const vec3 &shift)
Translate a primitive using its UUID.
Definition Context.cpp:1396
+
helios::Context::getPrimitiveArea
float getPrimitiveArea(uint UUID) const
Method to return the surface area of a Primitive.
Definition Context.cpp:6997
helios::Context::getPrimitiveData
void getPrimitiveData(uint UUID, const char *label, int &data) const
Get data associated with a primitive element.
Definition Context_data.cpp:1001
-
helios::Context::deletePrimitive
void deletePrimitive(uint UUID)
Delete a single primitive from the context.
Definition Context.cpp:1531
-
helios::Context::getObjectPointer
CompoundObject * getObjectPointer(uint ObjID) const
Get a pointer to a Compound Object.
Definition Context.cpp:2559
-
helios::Context::getPatchCenter
helios::vec3 getPatchCenter(uint UUID) const
Get the Cartesian (x,y,z) center position of a patch element.
Definition Context.cpp:1688
-
helios::Context::randu
float randu()
Draw a random number from a uniform distribution between 0 and 1.
Definition Context.cpp:1173
+
helios::Context::deletePrimitive
void deletePrimitive(uint UUID)
Delete a single primitive from the context.
Definition Context.cpp:1526
+
helios::Context::getObjectPointer
CompoundObject * getObjectPointer(uint ObjID) const
Get a pointer to a Compound Object.
Definition Context.cpp:2554
+
helios::Context::getPatchCenter
helios::vec3 getPatchCenter(uint UUID) const
Get the Cartesian (x,y,z) center position of a patch element.
Definition Context.cpp:1683
+
helios::Context::randu
float randu()
Draw a random number from a uniform distribution between 0 and 1.
Definition Context.cpp:1168
helios::Context::getGlobalData
void getGlobalData(const char *label, int &data) const
Get global data value (scalar integer)
Definition Context_data.cpp:4053
helios::Context::setGlobalData
void setGlobalData(const char *label, const int &data)
Add global data value (int)
Definition Context_data.cpp:3769
-
helios::Context::deleteObject
void deleteObject(uint ObjID)
Delete a single Compound Object from the context.
Definition Context.cpp:2594
+
helios::Context::deleteObject
void deleteObject(uint ObjID)
Delete a single Compound Object from the context.
Definition Context.cpp:2589
helios::Context::setPrimitiveData
void setPrimitiveData(const uint &UUID, const char *label, const int &data)
Add data value (int) associated with a primitive element.
Definition Context_data.cpp:655
-
helios::Context::doesPrimitiveExist
bool doesPrimitiveExist(uint UUID) const
Check if primitive exists for a given UUID.
Definition Context.cpp:1654
+
helios::Context::doesPrimitiveExist
bool doesPrimitiveExist(uint UUID) const
Check if primitive exists for a given UUID.
Definition Context.cpp:1649
helios::nullrotation
SphericalCoord nullrotation
Default null SphericalCoord that applies no rotation.
Definition global.cpp:57
-
helios::Context::addBox
std::vector< uint > addBox(const vec3 &center, const vec3 &size, const int3 &subdiv)
Add a rectangular prism tessellated with Patch primitives.
Definition Context.cpp:6024
-
helios::Context::addBoxObject
uint addBoxObject(const vec3 &center, const vec3 &size, const int3 &subdiv)
Add a rectangular prism tessellated with Patch primitives.
Definition Context.cpp:4877
-
helios::Context::addTile
std::vector< uint > addTile(const vec3 &center, const vec2 &size, const SphericalCoord &rotation, const int2 &subdiv)
Add a patch that is subdivided into a regular grid of sub-patches (tiled)
Definition Context.cpp:5686
-
helios::Context::addTileObject
uint addTileObject(const vec3 &center, const vec2 &size, const SphericalCoord &rotation, const int2 &subdiv)
Add a patch that is subdivided into a regular grid of sub-patches (tiled)
Definition Context.cpp:4460
+
helios::Context::addBox
std::vector< uint > addBox(const vec3 &center, const vec3 &size, const int3 &subdiv)
Add a rectangular prism tessellated with Patch primitives.
Definition Context.cpp:6091
+
helios::Context::addBoxObject
uint addBoxObject(const vec3 &center, const vec3 &size, const int3 &subdiv)
Add a rectangular prism tessellated with Patch primitives.
Definition Context.cpp:4944
+
helios::Context::addTile
std::vector< uint > addTile(const vec3 &center, const vec2 &size, const SphericalCoord &rotation, const int2 &subdiv)
Add a patch that is subdivided into a regular grid of sub-patches (tiled)
Definition Context.cpp:5753
+
helios::Context::addTileObject
uint addTileObject(const vec3 &center, const vec2 &size, const SphericalCoord &rotation, const int2 &subdiv)
Add a patch that is subdivided into a regular grid of sub-patches (tiled)
Definition Context.cpp:4512
helios::deg2rad
float deg2rad(float deg)
Convert degrees to radians.
Definition global.cpp:576
helios::sphere2cart
vec3 sphere2cart(const SphericalCoord &Spherical)
Convert Spherical coordinates to Cartesian coordinates.
Definition global.cpp:617
helios::acos_safe
float acos_safe(float x)
arccosine function to handle cases when round-off errors cause an argument <-1 or >1,...
Definition global.cpp:241
-
helios::Context::addTriangle
uint addTriangle(const helios::vec3 &vertex0, const helios::vec3 &vertex1, const helios::vec3 &vertex2)
Add new Triangle geometric primitive.
Definition Context.cpp:1323
-
helios::Context::addPatch
uint addPatch()
Add new default Patch geometric primitive, which is centered at the origin (0,0,0),...
Definition Context.cpp:1207
+
helios::Context::addTriangle
uint addTriangle(const helios::vec3 &vertex0, const helios::vec3 &vertex1, const helios::vec3 &vertex2)
Add new Triangle geometric primitive.
Definition Context.cpp:1318
+
helios::Context::addPatch
uint addPatch()
Add new default Patch geometric primitive, which is centered at the origin (0,0,0),...
Definition Context.cpp:1202
helios::make_int2
int2 make_int2(int x, int y)
Make an int2 vector from two ints.
Definition helios_vector_types.h:99
-
helios::make_vec2
vec2 make_vec2(float x, float y)
Make a vec2 from two floats.
Definition helios_vector_types.h:432
+
helios::make_vec2
vec2 make_vec2(float x, float y)
Make a vec2 from two floats.
Definition helios_vector_types.h:433
helios::make_int3
int3 make_int3(int X, int Y, int Z)
Make an int3 vector from three ints.
Definition helios_vector_types.h:198
-
helios::make_vec3
vec3 make_vec3(float x, float y, float z)
Make a vec3 from three floats.
Definition helios_vector_types.h:587
-
helios::make_SphericalCoord
SphericalCoord make_SphericalCoord(float elevation_radians, float azimuth_radians)
Make a SphericalCoord by specifying elevation and azimuth.
Definition helios_vector_types.h:1536
+
helios::make_vec3
vec3 make_vec3(float x, float y, float z)
Make a vec3 from three floats.
Definition helios_vector_types.h:589
+
helios::make_SphericalCoord
SphericalCoord make_SphericalCoord(float elevation_radians, float azimuth_radians)
Make a SphericalCoord by specifying elevation and azimuth.
Definition helios_vector_types.h:1539
CameraCalibration
Camera calibration structure used for camera calibration tasks.
Definition CameraCalibration.h:21
CameraCalibration::readROMCCanopy
std::vector< uint > readROMCCanopy()
Read ROMC canopy file (Used for self test).
Definition CameraCalibration.cpp:639
CameraProperties
Properties defining a radiation camera.
Definition RadiationModel.h:31
@@ -1919,15 +1919,15 @@
CameraProperties::HFOV
float HFOV
Camera horizontal field of view in degrees.
Definition RadiationModel.h:47
CameraProperties::lens_diameter
float lens_diameter
Diameter of the camera lens (lens_diameter = 0 gives a 'pinhole' camera with everything in focus)
Definition RadiationModel.h:44
CameraProperties::FOV_aspect_ratio
float FOV_aspect_ratio
Physical dimensions of the pixel array sensor in the horizontal (.x) and vertical (....
Definition RadiationModel.h:50
-
helios::SphericalCoord
Vector of spherical coordinates (elevation,azimuth)
Definition helios_vector_types.h:1468
-
helios::SphericalCoord::elevation
const float & elevation
Elevation angle (radians)
Definition helios_vector_types.h:1482
-
helios::SphericalCoord::azimuth
float azimuth
Azimuthal angle (radians)
Definition helios_vector_types.h:1489
+
helios::SphericalCoord
Vector of spherical coordinates (elevation,azimuth)
Definition helios_vector_types.h:1471
+
helios::SphericalCoord::elevation
const float & elevation
Elevation angle (radians)
Definition helios_vector_types.h:1485
+
helios::SphericalCoord::azimuth
float azimuth
Azimuthal angle (radians)
Definition helios_vector_types.h:1492
helios::vec2
Vector of two elements of type 'float'.
Definition helios_vector_types.h:346
helios::vec2::x
float x
First element in vector.
Definition helios_vector_types.h:350
helios::vec2::y
float y
Second element in vector.
Definition helios_vector_types.h:352
-
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:502
-
helios::vec3::x
float x
First element in vector.
Definition helios_vector_types.h:506
-
helios::vec3::y
float y
Second element in vector.
Definition helios_vector_types.h:508
+
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:503
+
helios::vec3::x
float x
First element in vector.
Definition helios_vector_types.h:507
+
helios::vec3::y
float y
Second element in vector.
Definition helios_vector_types.h:509
diff --git a/doc/html/plugins_2solarposition_2src_2self_test_8cpp_source.html b/doc/html/plugins_2solarposition_2src_2self_test_8cpp_source.html index 81626e5ad..5c3b1f335 100644 --- a/doc/html/plugins_2solarposition_2src_2self_test_8cpp_source.html +++ b/doc/html/plugins_2solarposition_2src_2self_test_8cpp_source.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
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@@ -289,15 +289,15 @@
SolarPosition::selfTest
int selfTest() const
Function to perform a self-test of model functions.
Definition selfTest.cpp:5
SolarPosition::calibrateTurbidityFromTimeseries
float calibrateTurbidityFromTimeseries(const std::string &timeseries_shortwave_flux_label_Wm2) const
Calculate the turbidity value based on a timeseries of net radiation measurements.
Definition SolarPosition.cpp:394
helios::Context
Stores the state associated with simulation.
Definition Context.h:1882
-
helios::Context::setDate
void setDate(int day, int month, int year)
Set simulation date by day, month, year.
Definition Context.cpp:1062
-
helios::Context::getTime
helios::Time getTime() const
Get the simulation time.
Definition Context.cpp:1169
-
helios::Context::getDate
helios::Date getDate() const
Get simulation date.
Definition Context.cpp:1102
-
helios::Context::setTime
void setTime(int minute, int hour)
Set simulation time.
Definition Context.cpp:1139
-
helios::Context::addTimeseriesData
void addTimeseriesData(const char *label, float value, const Date &date, const Time &time)
Add a data point to timeseries of data.
Definition Context.cpp:1818
-
helios::make_Time
Time make_Time(int hour, int minute)
Make a Time vector.
Definition helios_vector_types.h:1424
-
helios::make_Date
Date make_Date(int day, int month, int year)
Make a Date vector.
Definition helios_vector_types.h:1238
- - +
helios::Context::setDate
void setDate(int day, int month, int year)
Set simulation date by day, month, year.
Definition Context.cpp:1057
+
helios::Context::getTime
helios::Time getTime() const
Get the simulation time.
Definition Context.cpp:1164
+
helios::Context::getDate
helios::Date getDate() const
Get simulation date.
Definition Context.cpp:1097
+
helios::Context::setTime
void setTime(int minute, int hour)
Set simulation time.
Definition Context.cpp:1134
+
helios::Context::addTimeseriesData
void addTimeseriesData(const char *label, float value, const Date &date, const Time &time)
Add a data point to timeseries of data.
Definition Context.cpp:1813
+
helios::make_Time
Time make_Time(int hour, int minute)
Make a Time vector.
Definition helios_vector_types.h:1427
+
helios::make_Date
Date make_Date(int day, int month, int year)
Make a Date vector.
Definition helios_vector_types.h:1241
+ +
diff --git a/doc/html/primitive_intersection_8cu.html b/doc/html/primitive_intersection_8cu.html index 2a436ec5d..ae3c8f8f6 100644 --- a/doc/html/primitive_intersection_8cu.html +++ b/doc/html/primitive_intersection_8cu.html @@ -38,7 +38,7 @@ Logo -
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diff --git a/doc/html/primitive_intersection_8cu_source.html b/doc/html/primitive_intersection_8cu_source.html index 94b515b53..51f48f2df 100644 --- a/doc/html/primitive_intersection_8cu_source.html +++ b/doc/html/primitive_intersection_8cu_source.html @@ -38,7 +38,7 @@ Logo -
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diff --git a/doc/html/radiation_2include_2random_8h_source.html b/doc/html/radiation_2include_2random_8h_source.html index 035fa3f97..4138aac4c 100644 --- a/doc/html/radiation_2include_2random_8h_source.html +++ b/doc/html/radiation_2include_2random_8h_source.html @@ -38,7 +38,7 @@ Logo -
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diff --git a/doc/html/radiation__beers_law.html b/doc/html/radiation__beers_law.html index fbe418e36..78775397c 100644 --- a/doc/html/radiation__beers_law.html +++ b/doc/html/radiation__beers_law.html @@ -38,7 +38,7 @@ Logo -
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diff --git a/doc/html/radiation_basics.html b/doc/html/radiation_basics.html index 1c4fc7383..5275d0b43 100644 --- a/doc/html/radiation_basics.html +++ b/doc/html/radiation_basics.html @@ -38,7 +38,7 @@ Logo -
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diff --git a/doc/html/ray_generation_8cu.html b/doc/html/ray_generation_8cu.html index 3efe44796..f49745796 100644 --- a/doc/html/ray_generation_8cu.html +++ b/doc/html/ray_generation_8cu.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
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diff --git a/doc/html/ray_generation_8cu_source.html b/doc/html/ray_generation_8cu_source.html index cd69d5a8d..3acef1486 100644 --- a/doc/html/ray_generation_8cu_source.html +++ b/doc/html/ray_generation_8cu_source.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
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@@ -937,7 +937,7 @@
d_rotatePoint
__device__ float3 d_rotatePoint(const float3 &position, const float &theta, const float &phi)
Definition RayTracing.cu.h:106
helios::acos_safe
float acos_safe(float x)
arccosine function to handle cases when round-off errors cause an argument <-1 or >1,...
Definition global.cpp:241
helios::asin_safe
float asin_safe(float x)
arcsine function to handle cases when round-off errors cause an argument <-1 or >1,...
Definition global.cpp:247
-
helios::cross
vec3 cross(const vec3 &a, const vec3 &b)
Cross product of two vec3 vectors.
Definition helios_vector_types.h:597
+
helios::cross
vec3 cross(const vec3 &a, const vec3 &b)
Cross product of two vec3 vectors.
Definition helios_vector_types.h:599
PerRayData::source_ID
unsigned char source_ID
Numerical identifier for radiation source corresponding to each ray.
Definition RayTracing.cu.h:44
PerRayData::strength
double strength
"strength" or amount of energy associated with the ray.
Definition RayTracing.cu.h:29
diff --git a/doc/html/ray_hit_8cu.html b/doc/html/ray_hit_8cu.html index 2afdef6c4..d75def0d1 100644 --- a/doc/html/ray_hit_8cu.html +++ b/doc/html/ray_hit_8cu.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
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diff --git a/doc/html/ray_hit_8cu_source.html b/doc/html/ray_hit_8cu_source.html index 8fe34f004..f3b707235 100644 --- a/doc/html/ray_hit_8cu_source.html +++ b/doc/html/ray_hit_8cu_source.html @@ -38,7 +38,7 @@ Logo -
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@@ -733,7 +733,7 @@
d_transformPoint
__device__ void d_transformPoint(const float(&transform_matrix)[16], float3 &v)
Function to transform a 3D point based on current affine transformation matrix on the GPU.
Definition RayTracing.cu.h:316
d_rotatePoint
__device__ float3 d_rotatePoint(const float3 &position, const float &theta, const float &phi)
Definition RayTracing.cu.h:106
helios::acos_safe
float acos_safe(float x)
arccosine function to handle cases when round-off errors cause an argument <-1 or >1,...
Definition global.cpp:241
-
helios::cross
vec3 cross(const vec3 &a, const vec3 &b)
Cross product of two vec3 vectors.
Definition helios_vector_types.h:597
+
helios::cross
vec3 cross(const vec3 &a, const vec3 &b)
Cross product of two vec3 vectors.
Definition helios_vector_types.h:599
PerRayData::strength
double strength
"strength" or amount of energy associated with the ray.
Definition RayTracing.cu.h:29
PerRayData::periodic_depth
unsigned char periodic_depth
Number of periodic boundary intersections for ray.
Definition RayTracing.cu.h:39
diff --git a/doc/html/s__hull__pro_8h_source.html b/doc/html/s__hull__pro_8h_source.html index a1d7dde63..fbbb22cb2 100644 --- a/doc/html/s__hull__pro_8h_source.html +++ b/doc/html/s__hull__pro_8h_source.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
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['trunk_5fradius_5fspread_6',['trunk_radius_spread',['../struct_base_grape_vine_parameters.html#a6f2bca2ded24fa8da8f71d9b7ae5e033',1,'BaseGrapeVineParameters']]] ]; diff --git a/doc/html/sorghum_8cpp_source.html b/doc/html/sorghum_8cpp_source.html index d40e00865..13b0a0979 100644 --- a/doc/html/sorghum_8cpp_source.html +++ b/doc/html/sorghum_8cpp_source.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
@@ -1290,83 +1290,83 @@
1182
1183
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interpolateTube
helios::vec3 interpolateTube(const std::vector< helios::vec3 > &P, float frac)
Interpolate the position of a point along a tube.
Definition CanopyGenerator.cpp:2985
+
interpolateTube
helios::vec3 interpolateTube(const std::vector< helios::vec3 > &P, float frac)
Interpolate the position of a point along a tube.
Definition CanopyGenerator.cpp:3226
CanopyGenerator::sorghum
uint sorghum(const SorghumCanopyParameters &params, const helios::vec3 &origin)
Function to add an individual sorghum plant.
Definition sorghum.cpp:8
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helios::Context::translatePrimitive
void translatePrimitive(uint UUID, const vec3 &shift)
Translate a primitive using its UUID.
Definition Context.cpp:1401
-
helios::Context::deletePrimitive
void deletePrimitive(uint UUID)
Delete a single primitive from the context.
Definition Context.cpp:1531
-
helios::Context::randu
float randu()
Draw a random number from a uniform distribution between 0 and 1.
Definition Context.cpp:1173
-
helios::Context::rotatePrimitive
void rotatePrimitive(uint UUID, float rot, const char *axis)
Rotate a primitive about the x, y, or z axis using its UUID.
Definition Context.cpp:1415
-
helios::Context::copyPrimitive
uint copyPrimitive(uint UUID)
Make a copy of a primitive from the context.
Definition Context.cpp:1573
-
helios::Context::addDisk
std::vector< uint > addDisk(uint Ndivs, const helios::vec3 &center, const helios::vec2 &size)
Add new Disk geometric primitive to the Context given its center, and size.
Definition Context.cpp:6233
-
helios::Context::addTube
std::vector< uint > addTube(uint Ndivs, const std::vector< vec3 > &nodes, const std::vector< float > &radius)
Add a 3D tube compound object to the Context.
Definition Context.cpp:5807
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helios::flatten
std::vector< int > flatten(const std::vector< std::vector< int > > &vec)
Function to flatten a 2D int vector into a 1D vector.
Definition global.cpp:1859
+
helios::Context::translatePrimitive
void translatePrimitive(uint UUID, const vec3 &shift)
Translate a primitive using its UUID.
Definition Context.cpp:1396
+
helios::Context::deletePrimitive
void deletePrimitive(uint UUID)
Delete a single primitive from the context.
Definition Context.cpp:1526
+
helios::Context::randu
float randu()
Draw a random number from a uniform distribution between 0 and 1.
Definition Context.cpp:1168
+
helios::Context::rotatePrimitive
void rotatePrimitive(uint UUID, float rot, const char *axis)
Rotate a primitive about the x, y, or z axis using its UUID.
Definition Context.cpp:1410
+
helios::Context::copyPrimitive
uint copyPrimitive(uint UUID)
Make a copy of a primitive from the context.
Definition Context.cpp:1568
+
helios::Context::addDisk
std::vector< uint > addDisk(uint Ndivs, const helios::vec3 &center, const helios::vec2 &size)
Add new Disk geometric primitive to the Context given its center, and size.
Definition Context.cpp:6300
+
helios::Context::addTube
std::vector< uint > addTube(uint Ndivs, const std::vector< vec3 > &nodes, const std::vector< float > &radius)
Add a 3D tube compound object to the Context.
Definition Context.cpp:5874
+
helios::flatten
std::vector< int > flatten(const std::vector< std::vector< int > > &vec)
Function to flatten a 2D int vector into a 1D vector.
Definition global.cpp:1861
helios::cart2sphere
SphericalCoord cart2sphere(const vec3 &Cartesian)
Convert Cartesian coordinates to spherical coordinates.
Definition global.cpp:610
-
helios::Context::addTriangle
uint addTriangle(const helios::vec3 &vertex0, const helios::vec3 &vertex1, const helios::vec3 &vertex2)
Add new Triangle geometric primitive.
Definition Context.cpp:1323
-
helios::make_vec2
vec2 make_vec2(float x, float y)
Make a vec2 from two floats.
Definition helios_vector_types.h:432
-
helios::make_RGBcolor
RGBcolor make_RGBcolor(float r, float g, float b)
Make an RGBcolor vector.
Definition helios_vector_types.h:951
-
helios::make_vec3
vec3 make_vec3(float x, float y, float z)
Make a vec3 from three floats.
Definition helios_vector_types.h:587
-
helios::make_SphericalCoord
SphericalCoord make_SphericalCoord(float elevation_radians, float azimuth_radians)
Make a SphericalCoord by specifying elevation and azimuth.
Definition helios_vector_types.h:1536
-
SorghumCanopyParameters
Parameters defining Sorghum plant canopy.
Definition CanopyGenerator.h:722
-
SorghumCanopyParameters::s5_stem_subdivisions
int s5_stem_subdivisions
Number of stem radial subdivisions for stage 5.
Definition CanopyGenerator.h:885
-
SorghumCanopyParameters::s1_leaf1_angle
float s1_leaf1_angle
Leaf1 vertical angle of rotation for stage 1.
Definition CanopyGenerator.h:751
-
SorghumCanopyParameters::s5_stem_length
float s5_stem_length
Length of the sorghum stem for stage 5.
Definition CanopyGenerator.h:876
-
SorghumCanopyParameters::s4_seed_texture_file
std::string s4_seed_texture_file
Texture map of the panicle for stage 4.
Definition CanopyGenerator.h:856
-
SorghumCanopyParameters::s5_number_of_leaves
int s5_number_of_leaves
Number of leaves for the sorghum plant, stage 5.
Definition CanopyGenerator.h:903
-
SorghumCanopyParameters::s5_mean_leaf_angle
float s5_mean_leaf_angle
Mean vertical angle of rotation of leaf for stage 5 in degrees; Standard deviation for the angle is 1...
Definition CanopyGenerator.h:906
-
SorghumCanopyParameters::s4_stem_length
float s4_stem_length
Length of the sorghum stem for stage 4.
Definition CanopyGenerator.h:841
-
SorghumCanopyParameters::s3_leaf_subdivisions
helios::int2 s3_leaf_subdivisions
Number of sub-division segments of leaf in the x- (length) and y- (width) direction for stage 3.
Definition CanopyGenerator.h:827
-
SorghumCanopyParameters::s1_leaf_texture_file
std::string s1_leaf_texture_file
Texture map for sorghum leaf1 for stage 1.
Definition CanopyGenerator.h:763
-
SorghumCanopyParameters::s1_leaf_size2
helios::vec2 s1_leaf_size2
Length of leaf2 in x- (length) and y- (width) directions (prior to rotation) for stage 1.
Definition CanopyGenerator.h:745
-
SorghumCanopyParameters::s4_stem_radius
float s4_stem_radius
Radius of the sorghum stem for stage 4.
Definition CanopyGenerator.h:844
-
SorghumCanopyParameters::s3_mean_leaf_angle
float s3_mean_leaf_angle
Mean vertical angle of rotation of leaf for stage 3 in degrees; Standard deviation for the leaves is ...
Definition CanopyGenerator.h:833
-
SorghumCanopyParameters::s4_stem_subdivisions
float s4_stem_subdivisions
Number of stem radial subdivisions for stage 4.
Definition CanopyGenerator.h:847
-
SorghumCanopyParameters::s2_leaf_texture_file
std::string s2_leaf_texture_file
Texture map for sorghum leaf for stage 2.
Definition CanopyGenerator.h:810
-
SorghumCanopyParameters::s5_panicle_subdivisions
int s5_panicle_subdivisions
Number of panicle subdivisions for each grain sphere within a panicle, stage 5.
Definition CanopyGenerator.h:891
-
SorghumCanopyParameters::s4_mean_leaf_angle
float s4_mean_leaf_angle
Mean vertical angle of rotation of leaf for stage 4 in degrees; Standard deviation for the angle is 5...
Definition CanopyGenerator.h:868
-
SorghumCanopyParameters::s2_leaf_subdivisions
helios::int2 s2_leaf_subdivisions
Number of sub-division segments of leaf in the x- (length) and y- (width) direction for stage 2.
Definition CanopyGenerator.h:807
-
SorghumCanopyParameters::s4_leaf_size
helios::vec2 s4_leaf_size
Length of leaf in x- (length) and y- (width) directions (prior to rotation) for stage 4.
Definition CanopyGenerator.h:859
-
SorghumCanopyParameters::s4_leaf_subdivisions
helios::int2 s4_leaf_subdivisions
Number of sub-division segments of leaf in the x- (length) and y- (width) direction for stage 4.
Definition CanopyGenerator.h:862
-
SorghumCanopyParameters::s2_stem_radius
float s2_stem_radius
Radius of the sorghum stem for stage 2.
Definition CanopyGenerator.h:771
-
SorghumCanopyParameters::s5_stem_bend
float s5_stem_bend
Bend of the stem from mid-section for stage 5. The distance from the mid-section of the stem to the i...
Definition CanopyGenerator.h:882
-
SorghumCanopyParameters::s1_leaf_size1
helios::vec2 s1_leaf_size1
Length of leaf1 in x- (length) and y- (width) directions (prior to rotation) for stage 1.
Definition CanopyGenerator.h:742
-
SorghumCanopyParameters::s5_stem_radius
float s5_stem_radius
Radius of the sorghum stem for stage 5.
Definition CanopyGenerator.h:879
-
SorghumCanopyParameters::s3_stem_radius
float s3_stem_radius
Radius of the sorghum stem for stage 3.
Definition CanopyGenerator.h:818
-
SorghumCanopyParameters::s5_leaf_texture_file
std::string s5_leaf_texture_file
Texture map for sorghum leaf, stage 5.
Definition CanopyGenerator.h:909
-
SorghumCanopyParameters::s5_leaf_subdivisions
helios::int2 s5_leaf_subdivisions
Number of sub-division segments of leaf in the x- (length) and y- (width) direction for stage 5.
Definition CanopyGenerator.h:900
-
SorghumCanopyParameters::s1_leaf_size3
helios::vec2 s1_leaf_size3
Length of leaf3 in x- (length) and y- (width) directions (prior to rotation) for stage 1.
Definition CanopyGenerator.h:748
-
SorghumCanopyParameters::s4_number_of_leaves
int s4_number_of_leaves
Number of leaves for the sorghum plant, stage 4.
Definition CanopyGenerator.h:865
-
SorghumCanopyParameters::s4_panicle_subdivisions
int s4_panicle_subdivisions
Number of panicle subdivisions for each grain sphere within a panicle, stage 4.
Definition CanopyGenerator.h:853
-
SorghumCanopyParameters::s3_stem_length
float s3_stem_length
Length of the sorghum stem for stage 3.
Definition CanopyGenerator.h:815
-
SorghumCanopyParameters::s3_leaf_texture_file
std::string s3_leaf_texture_file
Texture map for sorghum leaf for stage 3.
Definition CanopyGenerator.h:836
-
SorghumCanopyParameters::s2_leaf_size3
helios::vec2 s2_leaf_size3
Length of leaf3 in x- (length) and y- (width) directions (prior to rotation) for stage 2.
Definition CanopyGenerator.h:783
-
SorghumCanopyParameters::s1_stem_radius
float s1_stem_radius
Radius of the sorghum stem for stage 1.
Definition CanopyGenerator.h:736
-
SorghumCanopyParameters::s5_panicle_size
helios::vec2 s5_panicle_size
Size of panicle in x- and y- directions for stage 5.
Definition CanopyGenerator.h:888
-
SorghumCanopyParameters::s3_number_of_leaves
int s3_number_of_leaves
Number of leaves along the stem for stage 3.
Definition CanopyGenerator.h:830
-
SorghumCanopyParameters::s2_leaf_size5
helios::vec2 s2_leaf_size5
Length of leaf5 in x- (length) and y- (width) directions (prior to rotation) for stage 2.
Definition CanopyGenerator.h:789
-
SorghumCanopyParameters::s5_leaf_size
helios::vec2 s5_leaf_size
Length of leaf in x- (length) and y- (width) directions (prior to rotation) for stage 5.
Definition CanopyGenerator.h:897
-
SorghumCanopyParameters::s1_stem_subdivisions
float s1_stem_subdivisions
Number of stem radial subdivisions for stage 1.
Definition CanopyGenerator.h:739
-
SorghumCanopyParameters::s2_leaf_size4
helios::vec2 s2_leaf_size4
Length of leaf4 in x- (length) and y- (width) directions (prior to rotation) for stage 2.
Definition CanopyGenerator.h:786
-
SorghumCanopyParameters::s1_leaf_subdivisions
helios::int2 s1_leaf_subdivisions
Number of sub-division segments of leaf in the x- (length) and y- (width) direction for stage 1.
Definition CanopyGenerator.h:760
-
SorghumCanopyParameters::s4_leaf_texture_file
std::string s4_leaf_texture_file
Texture map for sorghum leaf, stage 4.
Definition CanopyGenerator.h:871
-
SorghumCanopyParameters::s2_leaf_size2
helios::vec2 s2_leaf_size2
Length of leaf2 in x- (length) and y- (width) directions (prior to rotation) for stage 2.
Definition CanopyGenerator.h:780
-
SorghumCanopyParameters::s3_leaf_size
helios::vec2 s3_leaf_size
Length of leaf in x- (length) and y- (width) directions (prior to rotation) for stage 3.
Definition CanopyGenerator.h:824
-
SorghumCanopyParameters::s2_stem_length
float s2_stem_length
Length of the sorghum stem for stage 2.
Definition CanopyGenerator.h:768
-
SorghumCanopyParameters::s1_leaf2_angle
float s1_leaf2_angle
Leaf2 vertical angle of rotation for stage 1.
Definition CanopyGenerator.h:754
-
SorghumCanopyParameters::s3_stem_subdivisions
float s3_stem_subdivisions
Number of stem radial subdivisions for stage 3.
Definition CanopyGenerator.h:821
-
SorghumCanopyParameters::s1_stem_length
float s1_stem_length
Length of the sorghum stem for stage 1.
Definition CanopyGenerator.h:733
-
SorghumCanopyParameters::sorghum_stage
int sorghum_stage
Sorghum categorized into 5 stages; 1 - Three leaf stage, 2 - Five leaf stage, 3 - Panicle initiation ...
Definition CanopyGenerator.h:728
-
SorghumCanopyParameters::s1_leaf3_angle
float s1_leaf3_angle
Leaf3 vertical angle of rotation for stage 1.
Definition CanopyGenerator.h:757
-
SorghumCanopyParameters::s2_leaf_size1
helios::vec2 s2_leaf_size1
Length of leaf1 in x- (length) and y- (width) directions (prior to rotation) for stage 2.
Definition CanopyGenerator.h:777
-
SorghumCanopyParameters::s5_seed_texture_file
std::string s5_seed_texture_file
Texture map of the panicle for stage 5.
Definition CanopyGenerator.h:894
-
SorghumCanopyParameters::s4_panicle_size
helios::vec2 s4_panicle_size
Size of panicle in x- and y- directions for stage 4.
Definition CanopyGenerator.h:850
-
helios::RGBcolor
R-G-B color vector.
Definition helios_vector_types.h:841
-
helios::SphericalCoord::zenith
const float & zenith
Zenithal angle (radians)
Definition helios_vector_types.h:1487
+
helios::Context::addTriangle
uint addTriangle(const helios::vec3 &vertex0, const helios::vec3 &vertex1, const helios::vec3 &vertex2)
Add new Triangle geometric primitive.
Definition Context.cpp:1318
+
helios::make_vec2
vec2 make_vec2(float x, float y)
Make a vec2 from two floats.
Definition helios_vector_types.h:433
+
helios::make_RGBcolor
RGBcolor make_RGBcolor(float r, float g, float b)
Make an RGBcolor vector.
Definition helios_vector_types.h:954
+
helios::make_vec3
vec3 make_vec3(float x, float y, float z)
Make a vec3 from three floats.
Definition helios_vector_types.h:589
+
helios::make_SphericalCoord
SphericalCoord make_SphericalCoord(float elevation_radians, float azimuth_radians)
Make a SphericalCoord by specifying elevation and azimuth.
Definition helios_vector_types.h:1539
+
SorghumCanopyParameters
Parameters defining Sorghum plant canopy.
Definition CanopyGenerator.h:764
+
SorghumCanopyParameters::s5_stem_subdivisions
int s5_stem_subdivisions
Number of stem radial subdivisions for stage 5.
Definition CanopyGenerator.h:944
+
SorghumCanopyParameters::s1_leaf1_angle
float s1_leaf1_angle
Leaf1 vertical angle of rotation for stage 1.
Definition CanopyGenerator.h:810
+
SorghumCanopyParameters::s5_stem_length
float s5_stem_length
Length of the sorghum stem for stage 5.
Definition CanopyGenerator.h:935
+
SorghumCanopyParameters::s4_seed_texture_file
std::string s4_seed_texture_file
Texture map of the panicle for stage 4.
Definition CanopyGenerator.h:915
+
SorghumCanopyParameters::s5_number_of_leaves
int s5_number_of_leaves
Number of leaves for the sorghum plant, stage 5.
Definition CanopyGenerator.h:962
+
SorghumCanopyParameters::s5_mean_leaf_angle
float s5_mean_leaf_angle
Mean vertical angle of rotation of leaf for stage 5 in degrees; Standard deviation for the angle is 1...
Definition CanopyGenerator.h:965
+
SorghumCanopyParameters::s4_stem_length
float s4_stem_length
Length of the sorghum stem for stage 4.
Definition CanopyGenerator.h:900
+
SorghumCanopyParameters::s3_leaf_subdivisions
helios::int2 s3_leaf_subdivisions
Number of sub-division segments of leaf in the x- (length) and y- (width) direction for stage 3.
Definition CanopyGenerator.h:886
+
SorghumCanopyParameters::s1_leaf_texture_file
std::string s1_leaf_texture_file
Texture map for sorghum leaf1 for stage 1.
Definition CanopyGenerator.h:822
+
SorghumCanopyParameters::s1_leaf_size2
helios::vec2 s1_leaf_size2
Length of leaf2 in x- (length) and y- (width) directions (prior to rotation) for stage 1.
Definition CanopyGenerator.h:804
+
SorghumCanopyParameters::s4_stem_radius
float s4_stem_radius
Radius of the sorghum stem for stage 4.
Definition CanopyGenerator.h:903
+
SorghumCanopyParameters::s3_mean_leaf_angle
float s3_mean_leaf_angle
Mean vertical angle of rotation of leaf for stage 3 in degrees; Standard deviation for the leaves is ...
Definition CanopyGenerator.h:892
+
SorghumCanopyParameters::s4_stem_subdivisions
float s4_stem_subdivisions
Number of stem radial subdivisions for stage 4.
Definition CanopyGenerator.h:906
+
SorghumCanopyParameters::s2_leaf_texture_file
std::string s2_leaf_texture_file
Texture map for sorghum leaf for stage 2.
Definition CanopyGenerator.h:869
+
SorghumCanopyParameters::s5_panicle_subdivisions
int s5_panicle_subdivisions
Number of panicle subdivisions for each grain sphere within a panicle, stage 5.
Definition CanopyGenerator.h:950
+
SorghumCanopyParameters::s4_mean_leaf_angle
float s4_mean_leaf_angle
Mean vertical angle of rotation of leaf for stage 4 in degrees; Standard deviation for the angle is 5...
Definition CanopyGenerator.h:927
+
SorghumCanopyParameters::s2_leaf_subdivisions
helios::int2 s2_leaf_subdivisions
Number of sub-division segments of leaf in the x- (length) and y- (width) direction for stage 2.
Definition CanopyGenerator.h:866
+
SorghumCanopyParameters::s4_leaf_size
helios::vec2 s4_leaf_size
Length of leaf in x- (length) and y- (width) directions (prior to rotation) for stage 4.
Definition CanopyGenerator.h:918
+
SorghumCanopyParameters::s4_leaf_subdivisions
helios::int2 s4_leaf_subdivisions
Number of sub-division segments of leaf in the x- (length) and y- (width) direction for stage 4.
Definition CanopyGenerator.h:921
+
SorghumCanopyParameters::s2_stem_radius
float s2_stem_radius
Radius of the sorghum stem for stage 2.
Definition CanopyGenerator.h:830
+
SorghumCanopyParameters::s5_stem_bend
float s5_stem_bend
Bend of the stem from mid-section for stage 5. The distance from the mid-section of the stem to the i...
Definition CanopyGenerator.h:941
+
SorghumCanopyParameters::s1_leaf_size1
helios::vec2 s1_leaf_size1
Length of leaf1 in x- (length) and y- (width) directions (prior to rotation) for stage 1.
Definition CanopyGenerator.h:801
+
SorghumCanopyParameters::s5_stem_radius
float s5_stem_radius
Radius of the sorghum stem for stage 5.
Definition CanopyGenerator.h:938
+
SorghumCanopyParameters::s3_stem_radius
float s3_stem_radius
Radius of the sorghum stem for stage 3.
Definition CanopyGenerator.h:877
+
SorghumCanopyParameters::s5_leaf_texture_file
std::string s5_leaf_texture_file
Texture map for sorghum leaf, stage 5.
Definition CanopyGenerator.h:968
+
SorghumCanopyParameters::s5_leaf_subdivisions
helios::int2 s5_leaf_subdivisions
Number of sub-division segments of leaf in the x- (length) and y- (width) direction for stage 5.
Definition CanopyGenerator.h:959
+
SorghumCanopyParameters::s1_leaf_size3
helios::vec2 s1_leaf_size3
Length of leaf3 in x- (length) and y- (width) directions (prior to rotation) for stage 1.
Definition CanopyGenerator.h:807
+
SorghumCanopyParameters::s4_number_of_leaves
int s4_number_of_leaves
Number of leaves for the sorghum plant, stage 4.
Definition CanopyGenerator.h:924
+
SorghumCanopyParameters::s4_panicle_subdivisions
int s4_panicle_subdivisions
Number of panicle subdivisions for each grain sphere within a panicle, stage 4.
Definition CanopyGenerator.h:912
+
SorghumCanopyParameters::s3_stem_length
float s3_stem_length
Length of the sorghum stem for stage 3.
Definition CanopyGenerator.h:874
+
SorghumCanopyParameters::s3_leaf_texture_file
std::string s3_leaf_texture_file
Texture map for sorghum leaf for stage 3.
Definition CanopyGenerator.h:895
+
SorghumCanopyParameters::s2_leaf_size3
helios::vec2 s2_leaf_size3
Length of leaf3 in x- (length) and y- (width) directions (prior to rotation) for stage 2.
Definition CanopyGenerator.h:842
+
SorghumCanopyParameters::s1_stem_radius
float s1_stem_radius
Radius of the sorghum stem for stage 1.
Definition CanopyGenerator.h:795
+
SorghumCanopyParameters::s5_panicle_size
helios::vec2 s5_panicle_size
Size of panicle in x- and y- directions for stage 5.
Definition CanopyGenerator.h:947
+
SorghumCanopyParameters::s3_number_of_leaves
int s3_number_of_leaves
Number of leaves along the stem for stage 3.
Definition CanopyGenerator.h:889
+
SorghumCanopyParameters::s2_leaf_size5
helios::vec2 s2_leaf_size5
Length of leaf5 in x- (length) and y- (width) directions (prior to rotation) for stage 2.
Definition CanopyGenerator.h:848
+
SorghumCanopyParameters::s5_leaf_size
helios::vec2 s5_leaf_size
Length of leaf in x- (length) and y- (width) directions (prior to rotation) for stage 5.
Definition CanopyGenerator.h:956
+
SorghumCanopyParameters::s1_stem_subdivisions
float s1_stem_subdivisions
Number of stem radial subdivisions for stage 1.
Definition CanopyGenerator.h:798
+
SorghumCanopyParameters::s2_leaf_size4
helios::vec2 s2_leaf_size4
Length of leaf4 in x- (length) and y- (width) directions (prior to rotation) for stage 2.
Definition CanopyGenerator.h:845
+
SorghumCanopyParameters::s1_leaf_subdivisions
helios::int2 s1_leaf_subdivisions
Number of sub-division segments of leaf in the x- (length) and y- (width) direction for stage 1.
Definition CanopyGenerator.h:819
+
SorghumCanopyParameters::s4_leaf_texture_file
std::string s4_leaf_texture_file
Texture map for sorghum leaf, stage 4.
Definition CanopyGenerator.h:930
+
SorghumCanopyParameters::s2_leaf_size2
helios::vec2 s2_leaf_size2
Length of leaf2 in x- (length) and y- (width) directions (prior to rotation) for stage 2.
Definition CanopyGenerator.h:839
+
SorghumCanopyParameters::s3_leaf_size
helios::vec2 s3_leaf_size
Length of leaf in x- (length) and y- (width) directions (prior to rotation) for stage 3.
Definition CanopyGenerator.h:883
+
SorghumCanopyParameters::s2_stem_length
float s2_stem_length
Length of the sorghum stem for stage 2.
Definition CanopyGenerator.h:827
+
SorghumCanopyParameters::s1_leaf2_angle
float s1_leaf2_angle
Leaf2 vertical angle of rotation for stage 1.
Definition CanopyGenerator.h:813
+
SorghumCanopyParameters::s3_stem_subdivisions
float s3_stem_subdivisions
Number of stem radial subdivisions for stage 3.
Definition CanopyGenerator.h:880
+
SorghumCanopyParameters::s1_stem_length
float s1_stem_length
Length of the sorghum stem for stage 1.
Definition CanopyGenerator.h:792
+
SorghumCanopyParameters::sorghum_stage
int sorghum_stage
Sorghum categorized into 5 stages; 1 - Three leaf stage, 2 - Five leaf stage, 3 - Panicle initiation ...
Definition CanopyGenerator.h:787
+
SorghumCanopyParameters::s1_leaf3_angle
float s1_leaf3_angle
Leaf3 vertical angle of rotation for stage 1.
Definition CanopyGenerator.h:816
+
SorghumCanopyParameters::s2_leaf_size1
helios::vec2 s2_leaf_size1
Length of leaf1 in x- (length) and y- (width) directions (prior to rotation) for stage 2.
Definition CanopyGenerator.h:836
+
SorghumCanopyParameters::s5_seed_texture_file
std::string s5_seed_texture_file
Texture map of the panicle for stage 5.
Definition CanopyGenerator.h:953
+
SorghumCanopyParameters::s4_panicle_size
helios::vec2 s4_panicle_size
Size of panicle in x- and y- directions for stage 4.
Definition CanopyGenerator.h:909
+
helios::RGBcolor
R-G-B color vector.
Definition helios_vector_types.h:844
+
helios::SphericalCoord::zenith
const float & zenith
Zenithal angle (radians)
Definition helios_vector_types.h:1490
helios::int2::y
int y
Second element in vector.
Definition helios_vector_types.h:50
helios::int2::x
int x
First element in vector.
Definition helios_vector_types.h:48
helios::vec2
Vector of two elements of type 'float'.
Definition helios_vector_types.h:346
helios::vec2::x
float x
First element in vector.
Definition helios_vector_types.h:350
helios::vec2::y
float y
Second element in vector.
Definition helios_vector_types.h:352
-
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:502
+
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:503
diff --git a/doc/html/strawberry_8cpp_source.html b/doc/html/strawberry_8cpp_source.html index 7e19e2ca2..cdf810850 100644 --- a/doc/html/strawberry_8cpp_source.html +++ b/doc/html/strawberry_8cpp_source.html @@ -38,7 +38,7 @@ Logo -
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138 int node_count = round( 2*length*params.stem_subdivisions );
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141 dir.normalize();
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143 SphericalCoord base_angle = cart2sphere(dir);
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245}
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interpolateTube
helios::vec3 interpolateTube(const std::vector< helios::vec3 > &P, float frac)
Interpolate the position of a point along a tube.
Definition CanopyGenerator.cpp:2985
+
interpolateTube
helios::vec3 interpolateTube(const std::vector< helios::vec3 > &P, float frac)
Interpolate the position of a point along a tube.
Definition CanopyGenerator.cpp:3226
CanopyGenerator::strawberry
uint strawberry(const StrawberryParameters &params, const helios::vec3 &origin)
Function to add an individual strawberry plant.
Definition strawberry.cpp:215
helios::Context
Stores the state associated with simulation.
Definition Context.h:1882
-
helios::Context::translatePrimitive
void translatePrimitive(uint UUID, const vec3 &shift)
Translate a primitive using its UUID.
Definition Context.cpp:1401
-
helios::Context::deletePrimitive
void deletePrimitive(uint UUID)
Delete a single primitive from the context.
Definition Context.cpp:1531
-
helios::Context::randu
float randu()
Draw a random number from a uniform distribution between 0 and 1.
Definition Context.cpp:1173
-
helios::Context::rotatePrimitive
void rotatePrimitive(uint UUID, float rot, const char *axis)
Rotate a primitive about the x, y, or z axis using its UUID.
Definition Context.cpp:1415
-
helios::Context::copyPrimitive
uint copyPrimitive(uint UUID)
Make a copy of a primitive from the context.
Definition Context.cpp:1573
-
helios::Context::scalePrimitive
void scalePrimitive(uint UUID, const helios::vec3 &S)
Scale a primitive using its UUID relative to the origin (0,0,0)
Definition Context.cpp:1486
-
helios::Context::addTube
std::vector< uint > addTube(uint Ndivs, const std::vector< vec3 > &nodes, const std::vector< float > &radius)
Add a 3D tube compound object to the Context.
Definition Context.cpp:5807
+
helios::Context::translatePrimitive
void translatePrimitive(uint UUID, const vec3 &shift)
Translate a primitive using its UUID.
Definition Context.cpp:1396
+
helios::Context::deletePrimitive
void deletePrimitive(uint UUID)
Delete a single primitive from the context.
Definition Context.cpp:1526
+
helios::Context::randu
float randu()
Draw a random number from a uniform distribution between 0 and 1.
Definition Context.cpp:1168
+
helios::Context::rotatePrimitive
void rotatePrimitive(uint UUID, float rot, const char *axis)
Rotate a primitive about the x, y, or z axis using its UUID.
Definition Context.cpp:1410
+
helios::Context::copyPrimitive
uint copyPrimitive(uint UUID)
Make a copy of a primitive from the context.
Definition Context.cpp:1568
+
helios::Context::scalePrimitive
void scalePrimitive(uint UUID, const helios::vec3 &S)
Scale a primitive using its UUID relative to the origin (0,0,0)
Definition Context.cpp:1481
+
helios::Context::addTube
std::vector< uint > addTube(uint Ndivs, const std::vector< vec3 > &nodes, const std::vector< float > &radius)
Add a 3D tube compound object to the Context.
Definition Context.cpp:5874
helios::cart2sphere
SphericalCoord cart2sphere(const vec3 &Cartesian)
Convert Cartesian coordinates to spherical coordinates.
Definition global.cpp:610
helios::sphere2cart
vec3 sphere2cart(const SphericalCoord &Spherical)
Convert Spherical coordinates to Cartesian coordinates.
Definition global.cpp:617
-
helios::Context::addTriangle
uint addTriangle(const helios::vec3 &vertex0, const helios::vec3 &vertex1, const helios::vec3 &vertex2)
Add new Triangle geometric primitive.
Definition Context.cpp:1323
-
helios::make_vec2
vec2 make_vec2(float x, float y)
Make a vec2 from two floats.
Definition helios_vector_types.h:432
-
helios::make_vec3
vec3 make_vec3(float x, float y, float z)
Make a vec3 from three floats.
Definition helios_vector_types.h:587
-
helios::make_SphericalCoord
SphericalCoord make_SphericalCoord(float elevation_radians, float azimuth_radians)
Make a SphericalCoord by specifying elevation and azimuth.
Definition helios_vector_types.h:1536
-
StrawberryParameters
Parameters defining the strawberry plant canopy.
Definition CanopyGenerator.h:606
-
StrawberryParameters::stem_subdivisions
int stem_subdivisions
Number of radial subdivisions for stem tubes.
Definition CanopyGenerator.h:624
-
StrawberryParameters::stems_per_plant
int stems_per_plant
Number of stems per plant.
Definition CanopyGenerator.h:627
-
StrawberryParameters::fruit_radius
float fruit_radius
Radius of strawberry fruit.
Definition CanopyGenerator.h:651
-
StrawberryParameters::fruit_subdivisions
uint fruit_subdivisions
Number of azimuthal and zenithal subdivisions making up fruit (will result in roughly fruit_subdivisi...
Definition CanopyGenerator.h:657
-
StrawberryParameters::plant_height
float plant_height
Height of the plant.
Definition CanopyGenerator.h:639
-
StrawberryParameters::leaf_subdivisions
helios::int2 leaf_subdivisions
Number of sub-division segments per leaf.
Definition CanopyGenerator.h:615
-
StrawberryParameters::fruit_texture_file
std::string fruit_texture_file
Texture map for strawberry fruit.
Definition CanopyGenerator.h:654
-
StrawberryParameters::clusters_per_stem
float clusters_per_stem
Number of strawberry clusters per plant stem. Clusters randomly have 1, 2, or 3 berries.
Definition CanopyGenerator.h:660
-
StrawberryParameters::stem_radius
float stem_radius
Radius of stems.
Definition CanopyGenerator.h:630
-
StrawberryParameters::leaf_texture_file
std::string leaf_texture_file
Path to texture map file for leaves.
Definition CanopyGenerator.h:618
-
StrawberryParameters::stem_color
helios::RGBcolor stem_color
Color of stems.
Definition CanopyGenerator.h:621
-
StrawberryParameters::leaf_length
float leaf_length
Maximum width of leaves.
Definition CanopyGenerator.h:612
-
helios::SphericalCoord
Vector of spherical coordinates (elevation,azimuth)
Definition helios_vector_types.h:1468
-
helios::SphericalCoord::elevation
const float & elevation
Elevation angle (radians)
Definition helios_vector_types.h:1482
-
helios::SphericalCoord::azimuth
float azimuth
Azimuthal angle (radians)
Definition helios_vector_types.h:1489
+
helios::Context::addTriangle
uint addTriangle(const helios::vec3 &vertex0, const helios::vec3 &vertex1, const helios::vec3 &vertex2)
Add new Triangle geometric primitive.
Definition Context.cpp:1318
+
helios::make_vec2
vec2 make_vec2(float x, float y)
Make a vec2 from two floats.
Definition helios_vector_types.h:433
+
helios::make_vec3
vec3 make_vec3(float x, float y, float z)
Make a vec3 from three floats.
Definition helios_vector_types.h:589
+
helios::make_SphericalCoord
SphericalCoord make_SphericalCoord(float elevation_radians, float azimuth_radians)
Make a SphericalCoord by specifying elevation and azimuth.
Definition helios_vector_types.h:1539
+
StrawberryParameters
Parameters defining the strawberry plant canopy.
Definition CanopyGenerator.h:626
+
StrawberryParameters::stem_subdivisions
int stem_subdivisions
Number of radial subdivisions for stem tubes.
Definition CanopyGenerator.h:661
+
StrawberryParameters::stems_per_plant
int stems_per_plant
Number of stems per plant.
Definition CanopyGenerator.h:664
+
StrawberryParameters::fruit_radius
float fruit_radius
Radius of strawberry fruit.
Definition CanopyGenerator.h:682
+
StrawberryParameters::fruit_subdivisions
uint fruit_subdivisions
Number of azimuthal and zenithal subdivisions making up fruit (will result in roughly fruit_subdivisi...
Definition CanopyGenerator.h:688
+
StrawberryParameters::plant_height
float plant_height
Height of the plant.
Definition CanopyGenerator.h:676
+
StrawberryParameters::leaf_subdivisions
helios::int2 leaf_subdivisions
Number of sub-division segments per leaf.
Definition CanopyGenerator.h:652
+
StrawberryParameters::fruit_texture_file
std::string fruit_texture_file
Texture map for strawberry fruit.
Definition CanopyGenerator.h:685
+
StrawberryParameters::clusters_per_stem
float clusters_per_stem
Number of strawberry clusters per plant stem. Clusters randomly have 1, 2, or 3 berries.
Definition CanopyGenerator.h:691
+
StrawberryParameters::stem_radius
float stem_radius
Radius of stems.
Definition CanopyGenerator.h:667
+
StrawberryParameters::leaf_texture_file
std::string leaf_texture_file
Path to texture map file for leaves.
Definition CanopyGenerator.h:655
+
StrawberryParameters::stem_color
helios::RGBcolor stem_color
Color of stems.
Definition CanopyGenerator.h:658
+
StrawberryParameters::leaf_length
float leaf_length
Maximum width of leaves.
Definition CanopyGenerator.h:649
+
helios::SphericalCoord
Vector of spherical coordinates (elevation,azimuth)
Definition helios_vector_types.h:1471
+
helios::SphericalCoord::elevation
const float & elevation
Elevation angle (radians)
Definition helios_vector_types.h:1485
+
helios::SphericalCoord::azimuth
float azimuth
Azimuthal angle (radians)
Definition helios_vector_types.h:1492
helios::int2::y
int y
Second element in vector.
Definition helios_vector_types.h:50
helios::int2::x
int x
First element in vector.
Definition helios_vector_types.h:48
helios::vec2
Vector of two elements of type 'float'.
Definition helios_vector_types.h:346
-
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:502
-
helios::vec3::normalize
void normalize()
Normalize vector components such that the magnitude is unity.
Definition helios_vector_types.h:513
+
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:503
+
helios::vec3::normalize
vec3 normalize()
Normalize vector components such that the magnitude is unity.
Definition helios_vector_types.h:514
diff --git a/doc/html/struct_aerial_hit_point.html b/doc/html/struct_aerial_hit_point.html index e0ea9d712..d4534c09a 100644 --- a/doc/html/struct_aerial_hit_point.html +++ b/doc/html/struct_aerial_hit_point.html @@ -38,7 +38,7 @@ Logo -
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Detailed Description

-

Definition at line 206 of file PlantArchitecture.h.

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Definition at line 221 of file PlantArchitecture.h.

Constructor & Destructor Documentation

◆ AxisRotation() [1/2]

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Definition at line 209 of file PlantArchitecture.h.

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Definition at line 237 of file PlantArchitecture.h.

diff --git a/doc/html/struct_b_b_lcoefficients.html b/doc/html/struct_b_b_lcoefficients.html index 79a59d674..faa930f63 100644 --- a/doc/html/struct_b_b_lcoefficients.html +++ b/doc/html/struct_b_b_lcoefficients.html @@ -38,7 +38,7 @@ Logo -
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diff --git a/doc/html/struct_base_canopy_parameters.html b/doc/html/struct_base_canopy_parameters.html new file mode 100644 index 000000000..2885cb519 --- /dev/null +++ b/doc/html/struct_base_canopy_parameters.html @@ -0,0 +1,345 @@ + + + + + + + +.: Helios Documentation + + + + + + + + + + + + + + + +
+
+ + + + + + + +
+
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+Public Member Functions | +Data Fields
+
BaseCanopyParameters Struct Referenceabstract
+
+
+ +

Base struct class for Canopy parameters. + More...

+ +

#include <CanopyGenerator.h>

+
+Inheritance diagram for BaseCanopyParameters:
+
+
+ + +BaseGrapeVineParameters +BeanParameters +ConicalCrownsCanopyParameters +HomogeneousCanopyParameters +SorghumCanopyParameters +SphericalCrownsCanopyParameters +StrawberryParameters +TomatoParameters +WalnutCanopyParameters +WhiteSpruceCanopyParameters + +
+ + + + + + + + + + + + + + + + +

+Public Member Functions

 BaseCanopyParameters ()
 Default constructor.
 
 BaseCanopyParameters (const pugi::xml_node canopy_node)
 
void readParametersFromXML (const pugi::xml_node canopy_node)
 Sets canopy parameters from the given XML node.
 
virtual void buildPlant (CanopyGenerator &canopy_generator, helios::vec3 origin)=0
 Makes the given Canopy generator build a single plant of our canopy type with our parameters at the given position.
 
virtual void buildCanopy (CanopyGenerator &canopy_generator)=0
 Makes the given Canopy generator build a canopy of our type with our parameters.
 
+ + + + + + + +

+Data Fields

helios::vec3 canopy_origin
 Cartesian (x,y,z) coordinate of the bottom center point of the canopy (i.e., specifying z=0 places the bottom surface of the canopy at z=0).
 
float canopy_rotation
 Azimuthal rotation of the canopy about the canopy origin. Note that if canopy_rotation is not equal to zero, the plant_spacing and plant_count parameters are defined in the x- and y-directions before rotation.
 
+

Detailed Description

+

Base struct class for Canopy parameters.

+ +

Definition at line 25 of file CanopyGenerator.h.

+

Constructor & Destructor Documentation

+ +

◆ BaseCanopyParameters() [1/2]

+ +
+
+ + + + + + + +
BaseCanopyParameters::BaseCanopyParameters ()
+
+ +

Default constructor.

+ +

Definition at line 28 of file CanopyGenerator.cpp.

+ +
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◆ BaseCanopyParameters() [2/2]

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+ + + + + + + +
BaseCanopyParameters::BaseCanopyParameters (const pugi::xml_node canopy_node)
+
+
Parameters
+ + +
[in]canopy_nodeXML node containing the canopy parameters
+
+
+ +

Definition at line 33 of file CanopyGenerator.cpp.

+ +
+
+

Member Function Documentation

+ +

◆ buildCanopy()

+ +
+
+ + + + + +
+ + + + + + + +
virtual void BaseCanopyParameters::buildCanopy (CanopyGenerator & canopy_generator)
+ 		+pure virtual
+
+ +

Makes the given Canopy generator build a canopy of our type with our parameters.

+ +

Implemented in BaseGrapeVineParameters, BeanParameters, ConicalCrownsCanopyParameters, GobletGrapevineParameters, HomogeneousCanopyParameters, SorghumCanopyParameters, SphericalCrownsCanopyParameters, SplitGrapevineParameters, StrawberryParameters, TomatoParameters, UnilateralGrapevineParameters, VSPGrapevineParameters, WalnutCanopyParameters, and WhiteSpruceCanopyParameters.

+ +
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+ +

◆ buildPlant()

+ +
+
+ + + + + +
+ + + + + + + + + + + +
virtual void BaseCanopyParameters::buildPlant (CanopyGenerator & canopy_generator,
helios::vec3 origin )
+ 		+pure virtual
+
+ +

Makes the given Canopy generator build a single plant of our canopy type with our parameters at the given position.

+ +

Implemented in BaseGrapeVineParameters, BeanParameters, ConicalCrownsCanopyParameters, GobletGrapevineParameters, HomogeneousCanopyParameters, SorghumCanopyParameters, SphericalCrownsCanopyParameters, SplitGrapevineParameters, StrawberryParameters, TomatoParameters, UnilateralGrapevineParameters, VSPGrapevineParameters, WalnutCanopyParameters, and WhiteSpruceCanopyParameters.

+ +
+
+ +

◆ readParametersFromXML()

+ +
+
+ + + + + + + +
void BaseCanopyParameters::readParametersFromXML (const pugi::xml_node canopy_node)
+
+ +

Sets canopy parameters from the given XML node.

+
Parameters
+ + +
[in]canopy_nodeXML node containing the canopy parameters
+
+
+ +

Definition at line 37 of file CanopyGenerator.cpp.

+ +
+
+

Field Documentation

+ +

◆ canopy_origin

+ +
+
+ + + + +
helios::vec3 BaseCanopyParameters::canopy_origin
+
+ +

Cartesian (x,y,z) coordinate of the bottom center point of the canopy (i.e., specifying z=0 places the bottom surface of the canopy at z=0).

+ +

Definition at line 50 of file CanopyGenerator.h.

+ +
+
+ +

◆ canopy_rotation

+ +
+
+ + + + +
float BaseCanopyParameters::canopy_rotation
+
+ +

Azimuthal rotation of the canopy about the canopy origin. Note that if canopy_rotation is not equal to zero, the plant_spacing and plant_count parameters are defined in the x- and y-directions before rotation.

+ +

Definition at line 53 of file CanopyGenerator.h.

+ +
+
+
The documentation for this struct was generated from the following files: +
+ +
+Generated by doxygen 1.12.0 +
+
+ + diff --git a/doc/html/struct_base_canopy_parameters.png b/doc/html/struct_base_canopy_parameters.png new file mode 100644 index 000000000..686fe937e Binary files /dev/null and b/doc/html/struct_base_canopy_parameters.png differ diff --git a/doc/html/struct_base_grape_vine_parameters.html b/doc/html/struct_base_grape_vine_parameters.html new file mode 100644 index 000000000..9111cf44d --- /dev/null +++ b/doc/html/struct_base_grape_vine_parameters.html @@ -0,0 +1,1217 @@ + + + + + + + +.: Helios Documentation + + + + + + + + + + + + + + + +
+
+ + + + + + + +
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+Public Member Functions | +Data Fields
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BaseGrapeVineParameters Struct Reference
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+
+
+Inheritance diagram for BaseGrapeVineParameters:
+
+
+ + +BaseCanopyParameters +GobletGrapevineParameters +SplitGrapevineParameters +UnilateralGrapevineParameters +VSPGrapevineParameters + +
+ + + + + + + + + + + + + + + + + + + + + + + + + +

+Public Member Functions

 BaseGrapeVineParameters ()
 Default constructor.
 
 BaseGrapeVineParameters (const pugi::xml_node canopy_node)
 
void readParametersFromXML (const pugi::xml_node canopy_node)
 Sets canopy parameters from the given XML node.
 
void buildPlant (CanopyGenerator &canopy_generator, helios::vec3 origin) override
 Makes the given Canopy generator build a single plant of our canopy type with our parameters at the given position.
 
void buildCanopy (CanopyGenerator &canopy_generator) override
 Makes the given Canopy generator build a canopy of our type with our parameters.
 
- Public Member Functions inherited from BaseCanopyParameters
 BaseCanopyParameters ()
 Default constructor.
 
 BaseCanopyParameters (const pugi::xml_node canopy_node)
 
void readParametersFromXML (const pugi::xml_node canopy_node)
 Sets canopy parameters from the given XML node.
 
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+Data Fields

float leaf_width
 Maximum width of leaves. Leaf width increases logarithmically from the shoot tip, so leaf_width is the width at the base of the shoot.
 
float leaf_width_spread
 Spread value for the maximum leaf width. With any new canopy or plant generation, the maximum leaf width would be between leaf_width - leaf_width_spread and leaf_width + leaf_width_spread.
 
helios::int2 leaf_subdivisions
 Number of sub-division segments per leaf.
 
std::string leaf_texture_file
 Path to texture map file for leaves.
 
std::string wood_texture_file
 Path to texture map file for trunks/branches.
 
int wood_subdivisions
 Number of radial subdivisions for trunk/cordon/shoot tubes.
 
int wood_subdivisions_spread
 Spread value for the number of wood subdivisions. With any new canopy or plant generation, the maximum number of wood subdivisions would be between wood_subdivisions - wood_subdivisions_spread and wood_subdivisions + wood_subdivisions_spread.
 
float dead_probability
 Probability for a plant to be dead, i.e. without any leaves or grapes.
 
float missing_plant_probability
 Probability for a plant to be missing.
 
float plant_spacing
 Spacing between adjacent plants along the row direction.
 
float plant_spacing_spread
 Spread value for the plant spacing. The spacing between adjacent plants along a row would vary between plant_spacing - plant_spacing_spread and plant_spacing + plant_spacing_spread.
 
float row_spacing
 Spacing between plant rows.
 
float row_spacing_spread
 Spread value for the row spacing. This allows to vary the alignment of plants along a row. The spacing between two plants of adjacent rows would be between row_spacing - row_spacing_spread and row_spacing + row_spacing_spread.
 
float trunk_height
 Distance between the ground and top of trunks.
 
float trunk_height_spread
 Spread value for the trunk height. With any new canopy or plant generation, the trunk height would be between trunk_height - trunk_height_spread and trunk_height + trunk_height_spread.
 
float trunk_radius
 Radius of the trunk at the widest point.
 
float trunk_radius_spread
 Spread value for the trunk radius. With any new canopy or plant generation, the trunk radius would be between trunk_radius - trunk_radius_spread and trunk_radius + trunk_radius_spread.
 
float cordon_length
 Length of the cordons. By default, half the plant spacing.
 
float cordon_length_spread
 Spread value for the cordon length. With any new canopy or plant generation, the cordon length would be between cordon_length - cordon_length_spread and cordon_length + cordon_length_spread.
 
float cordon_height
 Distance between the ground and cordon. Note - must be greater than or equal to the trunk height.
 
float cordon_height_spread
 Spread value for the cordon height. With any new canopy or plant generation, the cordon height would be between cordon_height - cordon_height_spread and cordon_height + cordon_height_spread.
 
float cordon_radius
 Radius of cordon branches.
 
float cordon_radius_spread
 Spread value for the cordon radius. With any new canopy or plant generation, the cordon radius would be between cordon_radius - cordon_radius_spread and cordon_radius + cordon_radius_spread.
 
float shoot_length
 Length of shoots.
 
float shoot_length_spread
 Spread value for the shoot length. With any new canopy or plant generation, the shoot length would be between shoot_length - shoot_length_spread and shoot_length + shoot_length_spread.
 
float shoot_radius
 Radius of shoot branches.
 
float shoot_radius_spread
 Spread value for the shoot radius. With any new canopy or plant generation, the shoot radius would be between shoot_radius - shoot_radius_spread and shoot_radius + shoot_radius_spread.
 
uint shoots_per_cordon
 Number of shoots on each cordon.
 
uint shoots_per_cordon_spread
 Spread value for the number of shoots per cordon. With any new canopy or plant generation, the number of shoots per cordon would be between shoots_per_cordon - shoots_per_cordon_spread and shoots_per_cordon + shoots_per_cordon_spread.
 
float leaf_spacing_fraction
 Spacing between adjacent leaves as a fraction of the local leaf width. E.g., leaf_spacing_fraction = 1 would give a leaf spacing equal to the leaf width.
 
float leaf_spacing_fraction_spread
 Spread value for the leaf spacing fraction. With any new canopy or plant generation, the leaf spacing fraction would be between leaf_spacing_fraction - leaf_spacing_fraction_spread and leaf_spacing_fraction + leaf_spacing_fraction_spread.
 
helios::int2 plant_count
 Number of crowns/plants in the x- and y-directions.
 
float grape_radius
 Radius of grape berries.
 
float grape_radius_spread
 Spread value for the grape radius. With any new canopy or plant generation, the grape radius would be between grape_radius - grape_radius_spread and grape_radius + grape_radius_spread.
 
float cluster_radius
 Maximum horizontal radius of grape clusters.
 
float cluster_radius_spread
 Spread value for the cluster radius. With any new canopy or plant generation, the cluster radius would be between cluster_radius - cluster_radius_spread and cluster_radius + cluster_radius_spread.
 
float cluster_height_max
 Maximum height of grape clusters along the shoot as a fraction of the total shoot length.
 
float cluster_height_max_spread
 Spread value for the cluster height. With any new canopy or plant generation, the cluster height would be between cluster_height - cluster_height_spread and cluster_height + cluster_height_spread.
 
helios::RGBcolor grape_color
 Color of grapes.
 
uint grape_subdivisions
 Number of azimuthal and zenithal subdivisions making up berries (will result in roughly 2*(grape_subdivisions)^2 triangles per grape berry)
 
uint grape_subdivisions_spread
 Spread value for the number of grape subdivisions. With any new canopy or plant generation, the number of grape subdivisions would be between grape_subdivisions - grape_subdivisions_spread and grape_subdivisions + grape_subdivisions_spread.
 
std::vector< float > leaf_angle_PDF
 
float canopy_rotation_spread
 Spread value for the canopy rotation. With any new canopy or plant generation, the canopy/plant rotation would be between canopy_rotation - canopy_rotation_spread and canopy_rotation + canopy_rotation_spread.
 
- Data Fields inherited from BaseCanopyParameters
helios::vec3 canopy_origin
 Cartesian (x,y,z) coordinate of the bottom center point of the canopy (i.e., specifying z=0 places the bottom surface of the canopy at z=0).
 
float canopy_rotation
 Azimuthal rotation of the canopy about the canopy origin. Note that if canopy_rotation is not equal to zero, the plant_spacing and plant_count parameters are defined in the x- and y-directions before rotation.
 
+

Detailed Description

+
+

Definition at line 231 of file CanopyGenerator.h.

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Constructor & Destructor Documentation

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◆ BaseGrapeVineParameters() [1/2]

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BaseGrapeVineParameters::BaseGrapeVineParameters ()
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Default constructor.

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Definition at line 339 of file CanopyGenerator.cpp.

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◆ BaseGrapeVineParameters() [2/2]

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BaseGrapeVineParameters::BaseGrapeVineParameters (const pugi::xml_node canopy_node)
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+
Parameters
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[in]canopy_nodeXML node containing the canopy parameters
+
+
+ +

Definition at line 387 of file CanopyGenerator.cpp.

+ +
+
+

Member Function Documentation

+ +

◆ buildCanopy()

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void BaseGrapeVineParameters::buildCanopy (CanopyGenerator & canopy_generator)
+ 		+overridevirtual
+
+ +

Makes the given Canopy generator build a canopy of our type with our parameters.

+ +

Implements BaseCanopyParameters.

+ +

Reimplemented in GobletGrapevineParameters, SplitGrapevineParameters, UnilateralGrapevineParameters, and VSPGrapevineParameters.

+ +

Definition at line 615 of file CanopyGenerator.cpp.

+ +
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◆ buildPlant()

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+ + + + + + + + + + + +
void BaseGrapeVineParameters::buildPlant (CanopyGenerator & canopy_generator,
helios::vec3 origin )
+ 		+overridevirtual
+
+ +

Makes the given Canopy generator build a single plant of our canopy type with our parameters at the given position.

+ +

Implements BaseCanopyParameters.

+ +

Reimplemented in GobletGrapevineParameters, SplitGrapevineParameters, UnilateralGrapevineParameters, and VSPGrapevineParameters.

+ +

Definition at line 611 of file CanopyGenerator.cpp.

+ +
+
+ +

◆ readParametersFromXML()

+ +
+
+ + + + + + + +
void BaseGrapeVineParameters::readParametersFromXML (const pugi::xml_node canopy_node)
+
+ +

Sets canopy parameters from the given XML node.

+
Parameters
+ + +
[in]canopy_nodeXML node containing the canopy parameters
+
+
+ +

Definition at line 391 of file CanopyGenerator.cpp.

+ +
+
+

Field Documentation

+ +

◆ canopy_rotation_spread

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float BaseGrapeVineParameters::canopy_rotation_spread
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+ +

Spread value for the canopy rotation. With any new canopy or plant generation, the canopy/plant rotation would be between canopy_rotation - canopy_rotation_spread and canopy_rotation + canopy_rotation_spread.

+ +

Definition at line 368 of file CanopyGenerator.h.

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+ +

◆ cluster_height_max

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float BaseGrapeVineParameters::cluster_height_max
+
+ +

Maximum height of grape clusters along the shoot as a fraction of the total shoot length.

+ +

Definition at line 352 of file CanopyGenerator.h.

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◆ cluster_height_max_spread

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float BaseGrapeVineParameters::cluster_height_max_spread
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Spread value for the cluster height. With any new canopy or plant generation, the cluster height would be between cluster_height - cluster_height_spread and cluster_height + cluster_height_spread.

+ +

Definition at line 354 of file CanopyGenerator.h.

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◆ cluster_radius

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float BaseGrapeVineParameters::cluster_radius
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Maximum horizontal radius of grape clusters.

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Definition at line 347 of file CanopyGenerator.h.

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◆ cluster_radius_spread

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float BaseGrapeVineParameters::cluster_radius_spread
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+ +

Spread value for the cluster radius. With any new canopy or plant generation, the cluster radius would be between cluster_radius - cluster_radius_spread and cluster_radius + cluster_radius_spread.

+ +

Definition at line 349 of file CanopyGenerator.h.

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+ +

◆ cordon_height

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float BaseGrapeVineParameters::cordon_height
+
+ +

Distance between the ground and cordon. Note - must be greater than or equal to the trunk height.

+ +

Definition at line 309 of file CanopyGenerator.h.

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◆ cordon_height_spread

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float BaseGrapeVineParameters::cordon_height_spread
+
+ +

Spread value for the cordon height. With any new canopy or plant generation, the cordon height would be between cordon_height - cordon_height_spread and cordon_height + cordon_height_spread.

+ +

Definition at line 311 of file CanopyGenerator.h.

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◆ cordon_length

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float BaseGrapeVineParameters::cordon_length
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Length of the cordons. By default, half the plant spacing.

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Definition at line 304 of file CanopyGenerator.h.

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◆ cordon_length_spread

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float BaseGrapeVineParameters::cordon_length_spread
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Spread value for the cordon length. With any new canopy or plant generation, the cordon length would be between cordon_length - cordon_length_spread and cordon_length + cordon_length_spread.

+ +

Definition at line 306 of file CanopyGenerator.h.

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◆ cordon_radius

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float BaseGrapeVineParameters::cordon_radius
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Radius of cordon branches.

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Definition at line 314 of file CanopyGenerator.h.

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◆ cordon_radius_spread

+ +
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float BaseGrapeVineParameters::cordon_radius_spread
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Spread value for the cordon radius. With any new canopy or plant generation, the cordon radius would be between cordon_radius - cordon_radius_spread and cordon_radius + cordon_radius_spread.

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Definition at line 316 of file CanopyGenerator.h.

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◆ dead_probability

+ +
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+ + + + +
float BaseGrapeVineParameters::dead_probability
+
+ +

Probability for a plant to be dead, i.e. without any leaves or grapes.

+ +

Definition at line 275 of file CanopyGenerator.h.

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◆ grape_color

+ +
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helios::RGBcolor BaseGrapeVineParameters::grape_color
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Color of grapes.

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Definition at line 357 of file CanopyGenerator.h.

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◆ grape_radius

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float BaseGrapeVineParameters::grape_radius
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Radius of grape berries.

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Definition at line 342 of file CanopyGenerator.h.

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◆ grape_radius_spread

+ +
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float BaseGrapeVineParameters::grape_radius_spread
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Spread value for the grape radius. With any new canopy or plant generation, the grape radius would be between grape_radius - grape_radius_spread and grape_radius + grape_radius_spread.

+ +

Definition at line 344 of file CanopyGenerator.h.

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◆ grape_subdivisions

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uint BaseGrapeVineParameters::grape_subdivisions
+
+ +

Number of azimuthal and zenithal subdivisions making up berries (will result in roughly 2*(grape_subdivisions)^2 triangles per grape berry)

+ +

Definition at line 360 of file CanopyGenerator.h.

+ +
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◆ grape_subdivisions_spread

+ +
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+ + + + +
uint BaseGrapeVineParameters::grape_subdivisions_spread
+
+ +

Spread value for the number of grape subdivisions. With any new canopy or plant generation, the number of grape subdivisions would be between grape_subdivisions - grape_subdivisions_spread and grape_subdivisions + grape_subdivisions_spread.

+ +

Definition at line 362 of file CanopyGenerator.h.

+ +
+
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◆ leaf_angle_PDF

+ +
+
+ + + + +
std::vector<float> BaseGrapeVineParameters::leaf_angle_PDF
+
+ +

Definition at line 365 of file CanopyGenerator.h.

+ +
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◆ leaf_spacing_fraction

+ +
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float BaseGrapeVineParameters::leaf_spacing_fraction
+
+ +

Spacing between adjacent leaves as a fraction of the local leaf width. E.g., leaf_spacing_fraction = 1 would give a leaf spacing equal to the leaf width.

+ +

Definition at line 334 of file CanopyGenerator.h.

+ +
+
+ +

◆ leaf_spacing_fraction_spread

+ +
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float BaseGrapeVineParameters::leaf_spacing_fraction_spread
+
+ +

Spread value for the leaf spacing fraction. With any new canopy or plant generation, the leaf spacing fraction would be between leaf_spacing_fraction - leaf_spacing_fraction_spread and leaf_spacing_fraction + leaf_spacing_fraction_spread.

+ +

Definition at line 336 of file CanopyGenerator.h.

+ +
+
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◆ leaf_subdivisions

+ +
+
+ + + + +
helios::int2 BaseGrapeVineParameters::leaf_subdivisions
+
+ +

Number of sub-division segments per leaf.

+ +

Definition at line 261 of file CanopyGenerator.h.

+ +
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◆ leaf_texture_file

+ +
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std::string BaseGrapeVineParameters::leaf_texture_file
+
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Path to texture map file for leaves.

+ +

Definition at line 264 of file CanopyGenerator.h.

+ +
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+ +

◆ leaf_width

+ +
+
+ + + + +
float BaseGrapeVineParameters::leaf_width
+
+ +

Maximum width of leaves. Leaf width increases logarithmically from the shoot tip, so leaf_width is the width at the base of the shoot.

+ +

Definition at line 256 of file CanopyGenerator.h.

+ +
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+ +

◆ leaf_width_spread

+ +
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+ + + + +
float BaseGrapeVineParameters::leaf_width_spread
+
+ +

Spread value for the maximum leaf width. With any new canopy or plant generation, the maximum leaf width would be between leaf_width - leaf_width_spread and leaf_width + leaf_width_spread.

+ +

Definition at line 258 of file CanopyGenerator.h.

+ +
+
+ +

◆ missing_plant_probability

+ +
+
+ + + + +
float BaseGrapeVineParameters::missing_plant_probability
+
+ +

Probability for a plant to be missing.

+
Note
Only applicable when building a canopy. If you are building an individual plant, well... just don't build it.
+ +

Definition at line 281 of file CanopyGenerator.h.

+ +
+
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◆ plant_count

+ +
+
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helios::int2 BaseGrapeVineParameters::plant_count
+
+ +

Number of crowns/plants in the x- and y-directions.

+ +

Definition at line 339 of file CanopyGenerator.h.

+ +
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◆ plant_spacing

+ +
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float BaseGrapeVineParameters::plant_spacing
+
+ +

Spacing between adjacent plants along the row direction.

+ +

Definition at line 284 of file CanopyGenerator.h.

+ +
+
+ +

◆ plant_spacing_spread

+ +
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float BaseGrapeVineParameters::plant_spacing_spread
+
+ +

Spread value for the plant spacing. The spacing between adjacent plants along a row would vary between plant_spacing - plant_spacing_spread and plant_spacing + plant_spacing_spread.

+ +

Definition at line 286 of file CanopyGenerator.h.

+ +
+
+ +

◆ row_spacing

+ +
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float BaseGrapeVineParameters::row_spacing
+
+ +

Spacing between plant rows.

+ +

Definition at line 289 of file CanopyGenerator.h.

+ +
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◆ row_spacing_spread

+ +
+
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float BaseGrapeVineParameters::row_spacing_spread
+
+ +

Spread value for the row spacing. This allows to vary the alignment of plants along a row. The spacing between two plants of adjacent rows would be between row_spacing - row_spacing_spread and row_spacing + row_spacing_spread.

+ +

Definition at line 291 of file CanopyGenerator.h.

+ +
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◆ shoot_length

+ +
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float BaseGrapeVineParameters::shoot_length
+
+ +

Length of shoots.

+ +

Definition at line 319 of file CanopyGenerator.h.

+ +
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◆ shoot_length_spread

+ +
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float BaseGrapeVineParameters::shoot_length_spread
+
+ +

Spread value for the shoot length. With any new canopy or plant generation, the shoot length would be between shoot_length - shoot_length_spread and shoot_length + shoot_length_spread.

+ +

Definition at line 321 of file CanopyGenerator.h.

+ +
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◆ shoot_radius

+ +
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float BaseGrapeVineParameters::shoot_radius
+
+ +

Radius of shoot branches.

+ +

Definition at line 324 of file CanopyGenerator.h.

+ +
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◆ shoot_radius_spread

+ +
+
+ + + + +
float BaseGrapeVineParameters::shoot_radius_spread
+
+ +

Spread value for the shoot radius. With any new canopy or plant generation, the shoot radius would be between shoot_radius - shoot_radius_spread and shoot_radius + shoot_radius_spread.

+ +

Definition at line 326 of file CanopyGenerator.h.

+ +
+
+ +

◆ shoots_per_cordon

+ +
+
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uint BaseGrapeVineParameters::shoots_per_cordon
+
+ +

Number of shoots on each cordon.

+ +

Definition at line 329 of file CanopyGenerator.h.

+ +
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◆ shoots_per_cordon_spread

+ +
+
+ + + + +
uint BaseGrapeVineParameters::shoots_per_cordon_spread
+
+ +

Spread value for the number of shoots per cordon. With any new canopy or plant generation, the number of shoots per cordon would be between shoots_per_cordon - shoots_per_cordon_spread and shoots_per_cordon + shoots_per_cordon_spread.

+ +

Definition at line 331 of file CanopyGenerator.h.

+ +
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+ +

◆ trunk_height

+ +
+
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float BaseGrapeVineParameters::trunk_height
+
+ +

Distance between the ground and top of trunks.

+ +

Definition at line 294 of file CanopyGenerator.h.

+ +
+
+ +

◆ trunk_height_spread

+ +
+
+ + + + +
float BaseGrapeVineParameters::trunk_height_spread
+
+ +

Spread value for the trunk height. With any new canopy or plant generation, the trunk height would be between trunk_height - trunk_height_spread and trunk_height + trunk_height_spread.

+ +

Definition at line 296 of file CanopyGenerator.h.

+ +
+
+ +

◆ trunk_radius

+ +
+
+ + + + +
float BaseGrapeVineParameters::trunk_radius
+
+ +

Radius of the trunk at the widest point.

+ +

Definition at line 299 of file CanopyGenerator.h.

+ +
+
+ +

◆ trunk_radius_spread

+ +
+
+ + + + +
float BaseGrapeVineParameters::trunk_radius_spread
+
+ +

Spread value for the trunk radius. With any new canopy or plant generation, the trunk radius would be between trunk_radius - trunk_radius_spread and trunk_radius + trunk_radius_spread.

+ +

Definition at line 301 of file CanopyGenerator.h.

+ +
+
+ +

◆ wood_subdivisions

+ +
+
+ + + + +
int BaseGrapeVineParameters::wood_subdivisions
+
+ +

Number of radial subdivisions for trunk/cordon/shoot tubes.

+ +

Definition at line 270 of file CanopyGenerator.h.

+ +
+
+ +

◆ wood_subdivisions_spread

+ +
+
+ + + + +
int BaseGrapeVineParameters::wood_subdivisions_spread
+
+ +

Spread value for the number of wood subdivisions. With any new canopy or plant generation, the maximum number of wood subdivisions would be between wood_subdivisions - wood_subdivisions_spread and wood_subdivisions + wood_subdivisions_spread.

+ +

Definition at line 272 of file CanopyGenerator.h.

+ +
+
+ +

◆ wood_texture_file

+ +
+
+ + + + +
std::string BaseGrapeVineParameters::wood_texture_file
+
+ +

Path to texture map file for trunks/branches.

+ +

Definition at line 267 of file CanopyGenerator.h.

+ +
+
+
The documentation for this struct was generated from the following files: +
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+Generated by doxygen 1.12.0 +
+
+ + diff --git a/doc/html/struct_base_grape_vine_parameters.png b/doc/html/struct_base_grape_vine_parameters.png new file mode 100644 index 000000000..0da0a298e Binary files /dev/null and b/doc/html/struct_base_grape_vine_parameters.png differ diff --git a/doc/html/struct_bean_parameters.html b/doc/html/struct_bean_parameters.html index 8f0ddf527..57a64634b 100644 --- a/doc/html/struct_bean_parameters.html +++ b/doc/html/struct_bean_parameters.html @@ -38,7 +38,7 @@ Logo -
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#include <CanopyGenerator.h>

+
+Inheritance diagram for BeanParameters:
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+ + +BaseCanopyParameters + +
+ + + + + + + + + + + + + + + + + + + +

Public Member Functions

 BeanParameters ()
 Default constructor.
 
 BeanParameters (const pugi::xml_node canopy_node)
 
void readParametersFromXML (const pugi::xml_node canopy_node)
 Sets canopy parameters from the given XML node.
 
void buildPlant (CanopyGenerator &canopy_generator, helios::vec3 origin) override
 Makes the given Canopy generator build a single plant of our canopy type with our parameters at the given position.
 
void buildCanopy (CanopyGenerator &canopy_generator) override
 Makes the given Canopy generator build a canopy of our type with our parameters.
 
- Public Member Functions inherited from BaseCanopyParameters
 BaseCanopyParameters ()
 Default constructor.
 
 BaseCanopyParameters (const pugi::xml_node canopy_node)
 
void readParametersFromXML (const pugi::xml_node canopy_node)
 Sets canopy parameters from the given XML node.
 
@@ -153,12 +182,6 @@ - - - - - - @@ -168,14 +191,21 @@ + + + + + + +

Data Fields

float germination_probability
 Probability that a plant in the canopy germinated.
 
helios::vec3 canopy_origin
 Cartesian (x,y,z) coordinate of the bottom center point of the canopy (i.e., specifying z=0 places the bottom surface of the canopy at z=0).
 
float canopy_rotation
 Azimuthal rotation of the canopy about the canopy origin. Note that if canopy_rotation is not equal to zero, the plant_spacing and plant_count parameters are defined in the x- and y-directions before rotation.
 
float pod_length
 Length of bean pods.
 
uint pod_subdivisions
 Number of lengthwise subdivisions making up pods.
 
- Data Fields inherited from BaseCanopyParameters
helios::vec3 canopy_origin
 Cartesian (x,y,z) coordinate of the bottom center point of the canopy (i.e., specifying z=0 places the bottom surface of the canopy at z=0).
 
float canopy_rotation
 Azimuthal rotation of the canopy about the canopy origin. Note that if canopy_rotation is not equal to zero, the plant_spacing and plant_count parameters are defined in the x- and y-directions before rotation.
 

Detailed Description

Parameters defining the bean plant canopy.

-

Definition at line 927 of file CanopyGenerator.h.

+

Definition at line 983 of file CanopyGenerator.h.

Constructor & Destructor Documentation

-

◆ BeanParameters()

+

◆ BeanParameters() [1/2]

@@ -191,47 +221,130 @@

Definition at line 584 of file CanopyGenerator.cpp.

+

Definition at line 1767 of file CanopyGenerator.cpp.

-

Field Documentation

- -

◆ canopy_origin

+ +

◆ BeanParameters() [2/2]

+ +
+
+ + + + + + + +
BeanParameters::BeanParameters (const pugi::xml_node canopy_node)
+
+
Parameters
+ + +
[in]canopy_nodeXML node containing the canopy parameters
+
+
+ +

Definition at line 1801 of file CanopyGenerator.cpp.

+ +
+
+

Member Function Documentation

+ +

◆ buildCanopy()

+ +
+
+ + + + + +
+ + + + + + + +
void BeanParameters::buildCanopy (CanopyGenerator & canopy_generator)
+ 		+overridevirtual
+
+ +

Makes the given Canopy generator build a canopy of our type with our parameters.

+ +

Implements BaseCanopyParameters.

+ +

Definition at line 1888 of file CanopyGenerator.cpp.

+ +
+
+ +

◆ buildPlant()

+ + + + + +
- + + + + + + + +
helios::vec3 BeanParameters::canopy_originvoid BeanParameters::buildPlant (CanopyGenerator & canopy_generator,
helios::vec3 origin )
+ 		+overridevirtual
-

Cartesian (x,y,z) coordinate of the bottom center point of the canopy (i.e., specifying z=0 places the bottom surface of the canopy at z=0).

+

Makes the given Canopy generator build a single plant of our canopy type with our parameters at the given position.

+ +

Implements BaseCanopyParameters.

-

Definition at line 969 of file CanopyGenerator.h.

+

Definition at line 1884 of file CanopyGenerator.cpp.

- -

◆ canopy_rotation

+ +

◆ readParametersFromXML()

- + + + +
float BeanParameters::canopy_rotationvoid BeanParameters::readParametersFromXML (const pugi::xml_node canopy_node)
-

Azimuthal rotation of the canopy about the canopy origin. Note that if canopy_rotation is not equal to zero, the plant_spacing and plant_count parameters are defined in the x- and y-directions before rotation.

+

Sets canopy parameters from the given XML node.

+
Parameters
+ + +
[in]canopy_nodeXML node containing the canopy parameters
+
+
-

Definition at line 972 of file CanopyGenerator.h.

+

Definition at line 1805 of file CanopyGenerator.cpp.

+

Field Documentation

◆ germination_probability

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diff --git a/doc/html/struct_bean_parameters.png b/doc/html/struct_bean_parameters.png new file mode 100644 index 000000000..8fbf13c2b Binary files /dev/null and b/doc/html/struct_bean_parameters.png differ diff --git a/doc/html/struct_camera_calibration.html b/doc/html/struct_camera_calibration.html index 23920d89f..70ba19fcc 100644 --- a/doc/html/struct_camera_calibration.html +++ b/doc/html/struct_camera_calibration.html @@ -38,7 +38,7 @@ Logo -
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diff --git a/doc/html/struct_conical_crowns_canopy_parameters.html b/doc/html/struct_conical_crowns_canopy_parameters.html index 484173e8c..3a664d729 100644 --- a/doc/html/struct_conical_crowns_canopy_parameters.html +++ b/doc/html/struct_conical_crowns_canopy_parameters.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
@@ -108,12 +108,41 @@ More...

#include <CanopyGenerator.h>

+
+Inheritance diagram for ConicalCrownsCanopyParameters:
+
+
+ + +BaseCanopyParameters + +
+ + + + + + + + + + + + + + + + + + + +

Public Member Functions

 ConicalCrownsCanopyParameters ()
 Default constructor.
 
 ConicalCrownsCanopyParameters (const pugi::xml_node canopy_node)
 
void readParametersFromXML (const pugi::xml_node canopy_node)
 Sets canopy parameters from the given XML node.
 
void buildPlant (CanopyGenerator &canopy_generator, helios::vec3 origin) override
 Makes the given Canopy generator build a single plant of our canopy type with our parameters at the given position.
 
void buildCanopy (CanopyGenerator &canopy_generator) override
 Makes the given Canopy generator build a canopy of our type with our parameters.
 
- Public Member Functions inherited from BaseCanopyParameters
 BaseCanopyParameters ()
 Default constructor.
 
 BaseCanopyParameters (const pugi::xml_node canopy_node)
 
void readParametersFromXML (const pugi::xml_node canopy_node)
 Sets canopy parameters from the given XML node.
 
@@ -150,22 +179,23 @@ - - - - - - + + + + + + +

Data Fields

helios::int2 plant_count
 Number of crowns/plants in the x- and y-directions.
 
helios::vec3 canopy_origin
 Cartesian (x,y,z) coordinate of the bottom center point of the canopy (i.e., specifying z=0 places the bottom surface of the canopy at z=0).
 
float canopy_rotation
 Azimuthal rotation of the canopy about the canopy origin. Note that if canopy_rotation is not equal to zero, the plant_spacing and plant_count parameters are defined in the x- and y-directions before rotation.
 
std::vector< float > leaf_angle_PDF
 
- Data Fields inherited from BaseCanopyParameters
helios::vec3 canopy_origin
 Cartesian (x,y,z) coordinate of the bottom center point of the canopy (i.e., specifying z=0 places the bottom surface of the canopy at z=0).
 
float canopy_rotation
 Azimuthal rotation of the canopy about the canopy origin. Note that if canopy_rotation is not equal to zero, the plant_spacing and plant_count parameters are defined in the x- and y-directions before rotation.
 

Detailed Description

Parameters defining the canopy with conical crowns.

-

Definition at line 111 of file CanopyGenerator.h.

+

Definition at line 171 of file CanopyGenerator.h.

Constructor & Destructor Documentation

-

◆ ConicalCrownsCanopyParameters()

+

◆ ConicalCrownsCanopyParameters() [1/2]

@@ -181,62 +211,145 @@

Definition at line 69 of file CanopyGenerator.cpp.

+

Definition at line 233 of file CanopyGenerator.cpp.

-

Field Documentation

- -

◆ canopy_configuration

+ +

◆ ConicalCrownsCanopyParameters() [2/2]

- + + + +
std::string ConicalCrownsCanopyParameters::canopy_configurationConicalCrownsCanopyParameters::ConicalCrownsCanopyParameters (const pugi::xml_node canopy_node)
+
Parameters
+ + +
[in]canopy_nodeXML node containing the canopy parameters
+
+
-

Specifies whether to use a uniformly spaced canopy (canopy_configuration="uniform") or a randomly arranged canopy with non-overlapping crowns (canopy_configuration="random").

+

Definition at line 257 of file CanopyGenerator.cpp.

+ +
+
+

Member Function Documentation

+ +

◆ buildCanopy()

+ +
+
+ + + + + +
+ + + + + + + +
void ConicalCrownsCanopyParameters::buildCanopy (CanopyGenerator & canopy_generator)
+ 		+overridevirtual
+
+ +

Makes the given Canopy generator build a canopy of our type with our parameters.

+ +

Implements BaseCanopyParameters.

+ +

Definition at line 335 of file CanopyGenerator.cpp.

-

Definition at line 141 of file CanopyGenerator.h.

+
+
+ +

◆ buildPlant()

+ +
+
+ + + + + +
+ + + + + + + + + + + +
void ConicalCrownsCanopyParameters::buildPlant (CanopyGenerator & canopy_generator,
helios::vec3 origin )
+ 		+overridevirtual
+
+ +

Makes the given Canopy generator build a single plant of our canopy type with our parameters at the given position.

+ +

Implements BaseCanopyParameters.

+ +

Definition at line 331 of file CanopyGenerator.cpp.

- -

◆ canopy_origin

+ +

◆ readParametersFromXML()

- + + + +
helios::vec3 ConicalCrownsCanopyParameters::canopy_originvoid ConicalCrownsCanopyParameters::readParametersFromXML (const pugi::xml_node canopy_node)
-

Cartesian (x,y,z) coordinate of the bottom center point of the canopy (i.e., specifying z=0 places the bottom surface of the canopy at z=0).

+

Sets canopy parameters from the given XML node.

+
Parameters
+ + +
[in]canopy_nodeXML node containing the canopy parameters
+
+
-

Definition at line 150 of file CanopyGenerator.h.

+

Definition at line 261 of file CanopyGenerator.cpp.

- -

◆ canopy_rotation

+

Field Documentation

+ +

◆ canopy_configuration

- +
float ConicalCrownsCanopyParameters::canopy_rotationstd::string ConicalCrownsCanopyParameters::canopy_configuration
-

Azimuthal rotation of the canopy about the canopy origin. Note that if canopy_rotation is not equal to zero, the plant_spacing and plant_count parameters are defined in the x- and y-directions before rotation.

+

Specifies whether to use a uniformly spaced canopy (canopy_configuration="uniform") or a randomly arranged canopy with non-overlapping crowns (canopy_configuration="random").

-

Definition at line 153 of file CanopyGenerator.h.

+

Definition at line 218 of file CanopyGenerator.h.

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+

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@@ -134,7 +134,7 @@

Detailed Description

-

Definition at line 277 of file PlantArchitecture.h.

+

Definition at line 292 of file PlantArchitecture.h.

Field Documentation

◆ base_position

@@ -148,7 +148,7 @@

-

Definition at line 296 of file PlantArchitecture.h.

+

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diff --git a/doc/html/struct_goblet_grapevine_parameters.html b/doc/html/struct_goblet_grapevine_parameters.html index 2c9a13daa..9e94c3394 100644 --- a/doc/html/struct_goblet_grapevine_parameters.html +++ b/doc/html/struct_goblet_grapevine_parameters.html @@ -38,7 +38,7 @@ Logo -
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@@ -98,8 +98,7 @@
-Public Member Functions | -Data Fields
+Public Member Functions
GobletGrapevineParameters Struct Reference
@@ -108,94 +107,198 @@ More...

#include <CanopyGenerator.h>

+
+Inheritance diagram for GobletGrapevineParameters:
+
+
+ + +BaseGrapeVineParameters +BaseCanopyParameters + +
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + +

Public Member Functions

 GobletGrapevineParameters ()
 Default constructor.
 
 GobletGrapevineParameters (const pugi::xml_node canopy_node)
 
void readParametersFromXML (const pugi::xml_node canopy_node)
 Sets canopy parameters from the given XML node.
 
void buildPlant (CanopyGenerator &canopy_generator, helios::vec3 origin) override
 Makes the given Canopy generator build a single plant of our canopy type with our parameters at the given position.
 
void buildCanopy (CanopyGenerator &canopy_generator) override
 Makes the given Canopy generator build a canopy of our type with our parameters.
 
- Public Member Functions inherited from BaseGrapeVineParameters
 BaseGrapeVineParameters ()
 Default constructor.
 
 BaseGrapeVineParameters (const pugi::xml_node canopy_node)
 
void readParametersFromXML (const pugi::xml_node canopy_node)
 Sets canopy parameters from the given XML node.
 
- Public Member Functions inherited from BaseCanopyParameters
 BaseCanopyParameters ()
 Default constructor.
 
 BaseCanopyParameters (const pugi::xml_node canopy_node)
 
void readParametersFromXML (const pugi::xml_node canopy_node)
 Sets canopy parameters from the given XML node.
 
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +

-Data Fields

float leaf_width
 Maximum width of leaves. Leaf width increases logarithmically from the shoot tip, so leaf_width is the width at the base of the shoot.
 
helios::int2 leaf_subdivisions
 Number of sub-division segments per leaf.
 
std::string leaf_texture_file
 Path to texture map file for leaves.
 
std::string wood_texture_file
 Path to texture map file for trunks/branches.
 
int wood_subdivisions
 Number of radial subdivisions for trunk/cordon/shoot tubes.
 
float plant_spacing
 Spacing between adjacent plants along the row direction.
 
float row_spacing
 Spacing between plant rows.
 
float trunk_height
 Distance between the ground and top of trunks.
 
float trunk_radius
 Radius of the trunk at the widest point.
 
float cordon_height
 Distance between the ground and cordon. Note - must be greater than or equal to the trunk height.
 
float cordon_radius
 Radius of cordon branches.
 
float shoot_length
 Length of shoots.
 
float shoot_radius
 Radius of shoot branches.
 
uint shoots_per_cordon
 Number of shoots on each cordon.
 
float leaf_spacing_fraction
 Spacing between adjacent leaves as a fraction of the local leaf width. E.g., leaf_spacing_fraction = 1 would give a leaf spacing equal to the leaf width.
 
helios::int2 plant_count
 Number of crowns/plants in the x- and y-directions.
 
helios::vec3 canopy_origin
 Cartesian (x,y,z) coordinate of the bottom center point of the canopy (i.e., specifying z=0 places the bottom surface of the canopy at z=0).
 
float canopy_rotation
 Azimuthal rotation of the canopy about the canopy origin. Note that if canopy_rotation is not equal to zero, the plant_spacing and plant_count parameters are defined in the x- and y-directions before rotation.
 
float grape_radius
 Radius of grape berries.
 
float cluster_radius
 Maximum horizontal radius of grape clusters.
 
float cluster_height_max
 Maximum height of grape clusters along the shoot as a fraction of the total shoot length.
 
helios::RGBcolor grape_color
 Color of grapes.
 
uint grape_subdivisions
 Number of azimuthal and zenithal subdivisions making up berries (will result in roughly grape_subdivisions^2 triangles per grape berry)
 
std::vector< float > leaf_angle_PDF
 

+Additional Inherited Members

- Data Fields inherited from BaseGrapeVineParameters
float leaf_width
 Maximum width of leaves. Leaf width increases logarithmically from the shoot tip, so leaf_width is the width at the base of the shoot.
 
float leaf_width_spread
 Spread value for the maximum leaf width. With any new canopy or plant generation, the maximum leaf width would be between leaf_width - leaf_width_spread and leaf_width + leaf_width_spread.
 
helios::int2 leaf_subdivisions
 Number of sub-division segments per leaf.
 
std::string leaf_texture_file
 Path to texture map file for leaves.
 
std::string wood_texture_file
 Path to texture map file for trunks/branches.
 
int wood_subdivisions
 Number of radial subdivisions for trunk/cordon/shoot tubes.
 
int wood_subdivisions_spread
 Spread value for the number of wood subdivisions. With any new canopy or plant generation, the maximum number of wood subdivisions would be between wood_subdivisions - wood_subdivisions_spread and wood_subdivisions + wood_subdivisions_spread.
 
float dead_probability
 Probability for a plant to be dead, i.e. without any leaves or grapes.
 
float missing_plant_probability
 Probability for a plant to be missing.
 
float plant_spacing
 Spacing between adjacent plants along the row direction.
 
float plant_spacing_spread
 Spread value for the plant spacing. The spacing between adjacent plants along a row would vary between plant_spacing - plant_spacing_spread and plant_spacing + plant_spacing_spread.
 
float row_spacing
 Spacing between plant rows.
 
float row_spacing_spread
 Spread value for the row spacing. This allows to vary the alignment of plants along a row. The spacing between two plants of adjacent rows would be between row_spacing - row_spacing_spread and row_spacing + row_spacing_spread.
 
float trunk_height
 Distance between the ground and top of trunks.
 
float trunk_height_spread
 Spread value for the trunk height. With any new canopy or plant generation, the trunk height would be between trunk_height - trunk_height_spread and trunk_height + trunk_height_spread.
 
float trunk_radius
 Radius of the trunk at the widest point.
 
float trunk_radius_spread
 Spread value for the trunk radius. With any new canopy or plant generation, the trunk radius would be between trunk_radius - trunk_radius_spread and trunk_radius + trunk_radius_spread.
 
float cordon_length
 Length of the cordons. By default, half the plant spacing.
 
float cordon_length_spread
 Spread value for the cordon length. With any new canopy or plant generation, the cordon length would be between cordon_length - cordon_length_spread and cordon_length + cordon_length_spread.
 
float cordon_height
 Distance between the ground and cordon. Note - must be greater than or equal to the trunk height.
 
float cordon_height_spread
 Spread value for the cordon height. With any new canopy or plant generation, the cordon height would be between cordon_height - cordon_height_spread and cordon_height + cordon_height_spread.
 
float cordon_radius
 Radius of cordon branches.
 
float cordon_radius_spread
 Spread value for the cordon radius. With any new canopy or plant generation, the cordon radius would be between cordon_radius - cordon_radius_spread and cordon_radius + cordon_radius_spread.
 
float shoot_length
 Length of shoots.
 
float shoot_length_spread
 Spread value for the shoot length. With any new canopy or plant generation, the shoot length would be between shoot_length - shoot_length_spread and shoot_length + shoot_length_spread.
 
float shoot_radius
 Radius of shoot branches.
 
float shoot_radius_spread
 Spread value for the shoot radius. With any new canopy or plant generation, the shoot radius would be between shoot_radius - shoot_radius_spread and shoot_radius + shoot_radius_spread.
 
uint shoots_per_cordon
 Number of shoots on each cordon.
 
uint shoots_per_cordon_spread
 Spread value for the number of shoots per cordon. With any new canopy or plant generation, the number of shoots per cordon would be between shoots_per_cordon - shoots_per_cordon_spread and shoots_per_cordon + shoots_per_cordon_spread.
 
float leaf_spacing_fraction
 Spacing between adjacent leaves as a fraction of the local leaf width. E.g., leaf_spacing_fraction = 1 would give a leaf spacing equal to the leaf width.
 
float leaf_spacing_fraction_spread
 Spread value for the leaf spacing fraction. With any new canopy or plant generation, the leaf spacing fraction would be between leaf_spacing_fraction - leaf_spacing_fraction_spread and leaf_spacing_fraction + leaf_spacing_fraction_spread.
 
helios::int2 plant_count
 Number of crowns/plants in the x- and y-directions.
 
float grape_radius
 Radius of grape berries.
 
float grape_radius_spread
 Spread value for the grape radius. With any new canopy or plant generation, the grape radius would be between grape_radius - grape_radius_spread and grape_radius + grape_radius_spread.
 
float cluster_radius
 Maximum horizontal radius of grape clusters.
 
float cluster_radius_spread
 Spread value for the cluster radius. With any new canopy or plant generation, the cluster radius would be between cluster_radius - cluster_radius_spread and cluster_radius + cluster_radius_spread.
 
float cluster_height_max
 Maximum height of grape clusters along the shoot as a fraction of the total shoot length.
 
float cluster_height_max_spread
 Spread value for the cluster height. With any new canopy or plant generation, the cluster height would be between cluster_height - cluster_height_spread and cluster_height + cluster_height_spread.
 
helios::RGBcolor grape_color
 Color of grapes.
 
uint grape_subdivisions
 Number of azimuthal and zenithal subdivisions making up berries (will result in roughly 2*(grape_subdivisions)^2 triangles per grape berry)
 
uint grape_subdivisions_spread
 Spread value for the number of grape subdivisions. With any new canopy or plant generation, the number of grape subdivisions would be between grape_subdivisions - grape_subdivisions_spread and grape_subdivisions + grape_subdivisions_spread.
 
std::vector< float > leaf_angle_PDF
 
float canopy_rotation_spread
 Spread value for the canopy rotation. With any new canopy or plant generation, the canopy/plant rotation would be between canopy_rotation - canopy_rotation_spread and canopy_rotation + canopy_rotation_spread.
 
- Data Fields inherited from BaseCanopyParameters
helios::vec3 canopy_origin
 Cartesian (x,y,z) coordinate of the bottom center point of the canopy (i.e., specifying z=0 places the bottom surface of the canopy at z=0).
 
float canopy_rotation
 Azimuthal rotation of the canopy about the canopy origin. Note that if canopy_rotation is not equal to zero, the plant_spacing and plant_count parameters are defined in the x- and y-directions before rotation.
 

Detailed Description

Parameters defining the grapevine canopy with goblet (vent a taille) trellis.

-

Definition at line 411 of file CanopyGenerator.h.

+

Definition at line 464 of file CanopyGenerator.h.

Constructor & Destructor Documentation

-

◆ GobletGrapevineParameters()

+

◆ GobletGrapevineParameters() [1/2]

@@ -211,438 +314,126 @@

Definition at line 253 of file CanopyGenerator.cpp.

+

Definition at line 793 of file CanopyGenerator.cpp.

-

Field Documentation

- -

◆ canopy_origin

+ +

◆ GobletGrapevineParameters() [2/2]

- - -
helios::vec3 GobletGrapevineParameters::canopy_origin
-
- -

Cartesian (x,y,z) coordinate of the bottom center point of the canopy (i.e., specifying z=0 places the bottom surface of the canopy at z=0).

- -

Definition at line 465 of file CanopyGenerator.h.

- -
-
- -

◆ canopy_rotation

- -
-
- - - - -
float GobletGrapevineParameters::canopy_rotation
-
- -

Azimuthal rotation of the canopy about the canopy origin. Note that if canopy_rotation is not equal to zero, the plant_spacing and plant_count parameters are defined in the x- and y-directions before rotation.

- -

Definition at line 468 of file CanopyGenerator.h.

- -
-
- -

◆ cluster_height_max

- -
-
- - - - -
float GobletGrapevineParameters::cluster_height_max
-
- -

Maximum height of grape clusters along the shoot as a fraction of the total shoot length.

- -

Definition at line 477 of file CanopyGenerator.h.

- -
-
- -

◆ cluster_radius

- -
-
- - - - -
float GobletGrapevineParameters::cluster_radius
-
- -

Maximum horizontal radius of grape clusters.

- -

Definition at line 474 of file CanopyGenerator.h.

- -
-
- -

◆ cordon_height

- -
-
- - - - -
float GobletGrapevineParameters::cordon_height
-
- -

Distance between the ground and cordon. Note - must be greater than or equal to the trunk height.

- -

Definition at line 444 of file CanopyGenerator.h.

- -
-
- -

◆ cordon_radius

- -
-
- - - - -
float GobletGrapevineParameters::cordon_radius
-
- -

Radius of cordon branches.

- -

Definition at line 447 of file CanopyGenerator.h.

- -
-
- -

◆ grape_color

- -
-
- - - - -
helios::RGBcolor GobletGrapevineParameters::grape_color
-
- -

Color of grapes.

- -

Definition at line 480 of file CanopyGenerator.h.

- -
-
- -

◆ grape_radius

- -
-
- - - - -
float GobletGrapevineParameters::grape_radius
-
- -

Radius of grape berries.

- -

Definition at line 471 of file CanopyGenerator.h.

- -
-
- -

◆ grape_subdivisions

- -
-
- - - - -
uint GobletGrapevineParameters::grape_subdivisions
-
- -

Number of azimuthal and zenithal subdivisions making up berries (will result in roughly grape_subdivisions^2 triangles per grape berry)

- -

Definition at line 483 of file CanopyGenerator.h.

- -
-
- -

◆ leaf_angle_PDF

- -
-
- - - - -
std::vector<float> GobletGrapevineParameters::leaf_angle_PDF
-
- -

Definition at line 486 of file CanopyGenerator.h.

- -
-
- -

◆ leaf_spacing_fraction

- -
-
- - - - -
float GobletGrapevineParameters::leaf_spacing_fraction
-
- -

Spacing between adjacent leaves as a fraction of the local leaf width. E.g., leaf_spacing_fraction = 1 would give a leaf spacing equal to the leaf width.

- -

Definition at line 459 of file CanopyGenerator.h.

- -
-
- -

◆ leaf_subdivisions

- -
-
- - - - -
helios::int2 GobletGrapevineParameters::leaf_subdivisions
-
- -

Number of sub-division segments per leaf.

- -

Definition at line 420 of file CanopyGenerator.h.

- -
-
- -

◆ leaf_texture_file

- -
-
- - - - -
std::string GobletGrapevineParameters::leaf_texture_file
-
- -

Path to texture map file for leaves.

- -

Definition at line 423 of file CanopyGenerator.h.

- -
-
- -

◆ leaf_width

- -
-
- - - - -
float GobletGrapevineParameters::leaf_width
-
- -

Maximum width of leaves. Leaf width increases logarithmically from the shoot tip, so leaf_width is the width at the base of the shoot.

- -

Definition at line 417 of file CanopyGenerator.h.

- -
-
- -

◆ plant_count

- -
-
- - - - -
helios::int2 GobletGrapevineParameters::plant_count
-
- -

Number of crowns/plants in the x- and y-directions.

- -

Definition at line 462 of file CanopyGenerator.h.

- -
-
- -

◆ plant_spacing

- -
-
- - - - -
float GobletGrapevineParameters::plant_spacing
-
- -

Spacing between adjacent plants along the row direction.

- -

Definition at line 432 of file CanopyGenerator.h.

- -
-
- -

◆ row_spacing

- -
-
- - - + + + +
float GobletGrapevineParameters::row_spacingGobletGrapevineParameters::GobletGrapevineParameters (const pugi::xml_node canopy_node)
+
Parameters
+ + +
[in]canopy_nodeXML node containing the canopy parameters
+
+
-

Spacing between plant rows.

- -

Definition at line 435 of file CanopyGenerator.h.

+

Definition at line 825 of file CanopyGenerator.cpp.

- -

◆ shoot_length

+

Member Function Documentation

+ +

◆ buildCanopy()

+ + + + + +
- + + + +
float GobletGrapevineParameters::shoot_lengthvoid GobletGrapevineParameters::buildCanopy (CanopyGenerator & canopy_generator)
+ 		+overridevirtual
-

Length of shoots.

- -

Definition at line 450 of file CanopyGenerator.h.

- -
-
- -

◆ shoot_radius

- -
-
- - - - -
float GobletGrapevineParameters::shoot_radius
-
+

Makes the given Canopy generator build a canopy of our type with our parameters.

-

Radius of shoot branches.

+

Reimplemented from BaseGrapeVineParameters.

-

Definition at line 453 of file CanopyGenerator.h.

+

Definition at line 837 of file CanopyGenerator.cpp.

- -

◆ shoots_per_cordon

+ +

◆ buildPlant()

+ + + + + +
- - -
uint GobletGrapevineParameters::shoots_per_cordon
-
- -

Number of shoots on each cordon.

- -

Definition at line 456 of file CanopyGenerator.h.

- -
- - -

◆ trunk_height

- -
-
- - - + + + -
float GobletGrapevineParameters::trunk_heightvoid GobletGrapevineParameters::buildPlant (CanopyGenerator & canopy_generator,
-
- -

Distance between the ground and top of trunks.

- -

Definition at line 438 of file CanopyGenerator.h.

- -
-
- -

◆ trunk_radius

- -
-
- - + + +
float GobletGrapevineParameters::trunk_radiushelios::vec3 origin )
+
+overridevirtual
-

Radius of the trunk at the widest point.

- -

Definition at line 441 of file CanopyGenerator.h.

- -
-
- -

◆ wood_subdivisions

- -
-
- - - - -
int GobletGrapevineParameters::wood_subdivisions
-
+

Makes the given Canopy generator build a single plant of our canopy type with our parameters at the given position.

-

Number of radial subdivisions for trunk/cordon/shoot tubes.

+

Reimplemented from BaseGrapeVineParameters.

-

Definition at line 429 of file CanopyGenerator.h.

+

Definition at line 833 of file CanopyGenerator.cpp.

- -

◆ wood_texture_file

+ +

◆ readParametersFromXML()

- + + + +
std::string GobletGrapevineParameters::wood_texture_filevoid GobletGrapevineParameters::readParametersFromXML (const pugi::xml_node canopy_node)
-

Path to texture map file for trunks/branches.

+

Sets canopy parameters from the given XML node.

+
Parameters
+ + +
[in]canopy_nodeXML node containing the canopy parameters
+
+
-

Definition at line 426 of file CanopyGenerator.h.

+

Definition at line 829 of file CanopyGenerator.cpp.

diff --git a/doc/html/struct_goblet_grapevine_parameters.png b/doc/html/struct_goblet_grapevine_parameters.png new file mode 100644 index 000000000..dc74d8827 Binary files /dev/null and b/doc/html/struct_goblet_grapevine_parameters.png differ diff --git a/doc/html/struct_grid_cell.html b/doc/html/struct_grid_cell.html index 8135723ae..c019b1c21 100644 --- a/doc/html/struct_grid_cell.html +++ b/doc/html/struct_grid_cell.html @@ -38,7 +38,7 @@ Logo -
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diff --git a/doc/html/struct_homogeneous_canopy_parameters.html b/doc/html/struct_homogeneous_canopy_parameters.html index 70c340881..9092eb6de 100644 --- a/doc/html/struct_homogeneous_canopy_parameters.html +++ b/doc/html/struct_homogeneous_canopy_parameters.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
@@ -108,12 +108,41 @@ More...

#include <CanopyGenerator.h>

+
+Inheritance diagram for HomogeneousCanopyParameters:
+
+
+ + +BaseCanopyParameters + +
+ + + + + + + + + + + + + + + + + + + +

Public Member Functions

 HomogeneousCanopyParameters ()
 Default constructor.
 
 HomogeneousCanopyParameters (const pugi::xml_node canopy_node)
 
void readParametersFromXML (const pugi::xml_node canopy_node)
 Sets canopy parameters from the given XML node.
 
void buildPlant (CanopyGenerator &canopy_generator, helios::vec3 origin) override
 Makes the given Canopy generator build a single plant of our canopy type with our parameters at the given position.
 
void buildCanopy (CanopyGenerator &canopy_generator) override
 Makes the given Canopy generator build a canopy of our type with our parameters.
 
- Public Member Functions inherited from BaseCanopyParameters
 BaseCanopyParameters ()
 Default constructor.
 
 BaseCanopyParameters (const pugi::xml_node canopy_node)
 
void readParametersFromXML (const pugi::xml_node canopy_node)
 Sets canopy parameters from the given XML node.
 
@@ -141,22 +170,26 @@ - - - + + + + + + +

Data Fields

helios::vec2 canopy_extent
 Horizontal extent of the canopy in the x- and y-directions.
 
helios::vec3 canopy_origin
 Cartesian (x,y,z) coordinate of the bottom center point of the canopy (i.e., specifying z=0 places the bottom surface of the canopy at z=0).
 
std::vector< float > leaf_angle_PDF
 
std::string buffer
 String specifying whether leaves should be placed so that leaf edges do not fall outside the specified canopy dimensions ("z", "xyz", or "none")
 
- Data Fields inherited from BaseCanopyParameters
helios::vec3 canopy_origin
 Cartesian (x,y,z) coordinate of the bottom center point of the canopy (i.e., specifying z=0 places the bottom surface of the canopy at z=0).
 
float canopy_rotation
 Azimuthal rotation of the canopy about the canopy origin. Note that if canopy_rotation is not equal to zero, the plant_spacing and plant_count parameters are defined in the x- and y-directions before rotation.
 

Detailed Description

Parameters defining the homogeneous canopy.

-

Definition at line 23 of file CanopyGenerator.h.

+

Definition at line 58 of file CanopyGenerator.h.

Constructor & Destructor Documentation

-

◆ HomogeneousCanopyParameters()

+

◆ HomogeneousCanopyParameters() [1/2]

@@ -172,80 +205,181 @@

Definition at line 21 of file CanopyGenerator.cpp.

+

Definition at line 51 of file CanopyGenerator.cpp.

-

Field Documentation

- -

◆ buffer

+ +

◆ HomogeneousCanopyParameters() [2/2]

- + + + +
std::string HomogeneousCanopyParameters::bufferHomogeneousCanopyParameters::HomogeneousCanopyParameters (const pugi::xml_node canopy_node)
+
Parameters
+ + +
[in]canopy_nodeXML node containing the canopy parameters
+
+
-

String specifying whether leaves should be placed so that leaf edges do not fall outside the specified canopy dimensions ("z", "xyz", or "none")

+

Definition at line 71 of file CanopyGenerator.cpp.

-

Definition at line 59 of file CanopyGenerator.h.

+
+
+

Member Function Documentation

+ +

◆ buildCanopy()

+ +
+
+ + + + + +
+ + + + + + + +
void HomogeneousCanopyParameters::buildCanopy (CanopyGenerator & canopy_generator)
+ 		+overridevirtual
+
+ +

Makes the given Canopy generator build a canopy of our type with our parameters.

+ +

Implements BaseCanopyParameters.

+ +

Definition at line 131 of file CanopyGenerator.cpp.

- -

◆ canopy_extent

+ +

◆ buildPlant()

+ + + + + +
- + + + + + + + +
helios::vec2 HomogeneousCanopyParameters::canopy_extentvoid HomogeneousCanopyParameters::buildPlant (CanopyGenerator & canopy_generator,
helios::vec3 origin )
+ 		+overridevirtual
-

Horizontal extent of the canopy in the x- and y-directions.

+

Makes the given Canopy generator build a single plant of our canopy type with our parameters at the given position.

+ +

Implements BaseCanopyParameters.

-

Definition at line 50 of file CanopyGenerator.h.

+

Definition at line 127 of file CanopyGenerator.cpp.

- -

◆ canopy_height

+ +

◆ readParametersFromXML()

- + + + +
float HomogeneousCanopyParameters::canopy_heightvoid HomogeneousCanopyParameters::readParametersFromXML (const pugi::xml_node canopy_node)
-

Height of the canopy.

+

Sets canopy parameters from the given XML node.

+
Parameters
+ + +
[in]canopy_nodeXML node containing the canopy parameters
+
+
+ +

Definition at line 75 of file CanopyGenerator.cpp.

+ +
+
+

Field Documentation

+ +

◆ buffer

+ +
+
+ + + + +
std::string HomogeneousCanopyParameters::buffer
+
+ +

String specifying whether leaves should be placed so that leaf edges do not fall outside the specified canopy dimensions ("z", "xyz", or "none")

+ +

Definition at line 108 of file CanopyGenerator.h.

-

Definition at line 47 of file CanopyGenerator.h.

+
+
+ +

◆ canopy_extent

+ +
+
+ + + + +
helios::vec2 HomogeneousCanopyParameters::canopy_extent
+
+ +

Horizontal extent of the canopy in the x- and y-directions.

+ +

Definition at line 102 of file CanopyGenerator.h.

- -

◆ canopy_origin

+ +

◆ canopy_height

- +
helios::vec3 HomogeneousCanopyParameters::canopy_originfloat HomogeneousCanopyParameters::canopy_height
-

Cartesian (x,y,z) coordinate of the bottom center point of the canopy (i.e., specifying z=0 places the bottom surface of the canopy at z=0).

+

Height of the canopy.

-

Definition at line 53 of file CanopyGenerator.h.

+

Definition at line 99 of file CanopyGenerator.h.

@@ -263,7 +397,7 @@

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Definition at line 41 of file CanopyGenerator.h.

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+

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+

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Definition at line 32 of file CanopyGenerator.h.

+

Definition at line 84 of file CanopyGenerator.h.

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Definition at line 35 of file CanopyGenerator.h.

+

Definition at line 87 of file CanopyGenerator.h.

diff --git a/doc/html/struct_homogeneous_canopy_parameters.png b/doc/html/struct_homogeneous_canopy_parameters.png new file mode 100644 index 000000000..bb1b9e67f Binary files /dev/null and b/doc/html/struct_homogeneous_canopy_parameters.png differ diff --git a/doc/html/struct_leaf_optics_properties.html b/doc/html/struct_leaf_optics_properties.html index 7fe61659d..7fc8363e1 100644 --- a/doc/html/struct_leaf_optics_properties.html +++ b/doc/html/struct_leaf_optics_properties.html @@ -38,7 +38,7 @@ Logo -
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diff --git a/doc/html/struct_per_ray_data.html b/doc/html/struct_per_ray_data.html index 2704a13d7..f0293b644 100644 --- a/doc/html/struct_per_ray_data.html +++ b/doc/html/struct_per_ray_data.html @@ -38,7 +38,7 @@ Logo -
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diff --git a/doc/html/struct_photosynthetic_temperature_response_parameters.html b/doc/html/struct_photosynthetic_temperature_response_parameters.html index 15d01310a..b8c4476e4 100644 --- a/doc/html/struct_photosynthetic_temperature_response_parameters.html +++ b/doc/html/struct_photosynthetic_temperature_response_parameters.html @@ -38,7 +38,7 @@ Logo -
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diff --git a/doc/html/struct_phytomer.html b/doc/html/struct_phytomer.html index ba926a11e..ffc88a186 100644 --- a/doc/html/struct_phytomer.html +++ b/doc/html/struct_phytomer.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
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@@ -128,6 +128,8 @@   bool hasLeaf () const   +float calculateDownstreamLeafArea () const +  void setInternodeLengthScaleFraction (float internode_scale_factor_fraction, bool update_context_geometry)   void scaleInternodeMaxLength (float scale_factor) @@ -257,7 +259,7 @@

Detailed Description

-

Definition at line 637 of file PlantArchitecture.h.

+

Definition at line 651 of file PlantArchitecture.h.

Constructor & Destructor Documentation

◆ Phytomer()

@@ -338,11 +340,30 @@

-

Definition at line 744 of file PlantArchitecture.cpp.

+

Definition at line 775 of file PlantArchitecture.cpp.

Member Function Documentation

+ +

◆ calculateDownstreamLeafArea()

+ +
+
+ + + + + + + +
float Phytomer::calculateDownstreamLeafArea () const
+
+ +

Definition at line 1769 of file PlantArchitecture.cpp.

+ +
+

◆ calculateFruitConstructionCosts()

@@ -358,7 +379,7 @@

-

Definition at line 221 of file CarbohydrateModel.cpp.

+

Definition at line 223 of file CarbohydrateModel.cpp.

@@ -389,7 +410,7 @@

-

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+

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+

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+

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+

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+

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+

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-

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diff --git a/doc/html/struct_phytomer_parameters.html b/doc/html/struct_phytomer_parameters.html index ca6fcbb98..ddab06aa8 100644 --- a/doc/html/struct_phytomer_parameters.html +++ b/doc/html/struct_phytomer_parameters.html @@ -38,7 +38,7 @@ Logo -
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Detailed Description

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Constructor & Destructor Documentation

◆ PhytomerParameters() [1/2]

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diff --git a/doc/html/struct_plant_instance.html b/doc/html/struct_plant_instance.html index 87c743f30..b411e219f 100644 --- a/doc/html/struct_plant_instance.html +++ b/doc/html/struct_plant_instance.html @@ -38,7 +38,7 @@ Logo -
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Detailed Description

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Constructor & Destructor Documentation

◆ PlantInstance()

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+ + + + +

◆ is_evergreen

+ +
+
+ + + + +
bool PlantInstance::is_evergreen = false
+
+ +

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diff --git a/doc/html/struct_radiation_band.html b/doc/html/struct_radiation_band.html index 305d839b3..74e09d188 100644 --- a/doc/html/struct_radiation_band.html +++ b/doc/html/struct_radiation_band.html @@ -38,7 +38,7 @@ Logo -
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diff --git a/doc/html/struct_radiation_camera.html b/doc/html/struct_radiation_camera.html index bfb65fdc6..a5c58538b 100644 --- a/doc/html/struct_radiation_camera.html +++ b/doc/html/struct_radiation_camera.html @@ -38,7 +38,7 @@ Logo -
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diff --git a/doc/html/struct_radiation_source.html b/doc/html/struct_radiation_source.html index 51e60fb21..0317cadb1 100644 --- a/doc/html/struct_radiation_source.html +++ b/doc/html/struct_radiation_source.html @@ -38,7 +38,7 @@ Logo -
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diff --git a/doc/html/struct_random_parameter__float.html b/doc/html/struct_random_parameter__float.html index c7b51718b..0a68a1b2c 100644 --- a/doc/html/struct_random_parameter__float.html +++ b/doc/html/struct_random_parameter__float.html @@ -38,7 +38,7 @@ Logo -
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@@ -113,6 +113,8 @@   void uniformDistribution (int minval, int maxval)   +void discreteValues (const std::vector< int > &values) +  int val ()   int resample () @@ -120,7 +122,7 @@

Detailed Description

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Constructor & Destructor Documentation

◆ RandomParameter_int()

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Member Function Documentation

+ +

◆ discreteValues()

+ +
+
+ + + + + +
+ + + + + + + +
void RandomParameter_int::discreteValues (const std::vector< int > & values)
+ 		+inline
+
+ +

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+ +
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diff --git a/doc/html/struct_scan_metadata.html b/doc/html/struct_scan_metadata.html index d8e5521c9..68384a7e0 100644 --- a/doc/html/struct_scan_metadata.html +++ b/doc/html/struct_scan_metadata.html @@ -38,7 +38,7 @@ Logo -
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diff --git a/doc/html/struct_shader.html b/doc/html/struct_shader.html index 36cd24abf..0514756ae 100644 --- a/doc/html/struct_shader.html +++ b/doc/html/struct_shader.html @@ -38,7 +38,7 @@ Logo -
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diff --git a/doc/html/struct_shoot.html b/doc/html/struct_shoot.html index ef3297077..e87437303 100644 --- a/doc/html/struct_shoot.html +++ b/doc/html/struct_shoot.html @@ -38,7 +38,7 @@ Logo -
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@@ -134,6 +134,8 @@   helios::vec3 getShootAxisVector (float shoot_fraction) const   +float sumShootLeafArea (uint start_node_index=0) const +  void breakDormancy ()   void makeDormant () @@ -191,8 +193,8 @@   bool build_context_geometry_internode = true   -std::map< int, int > childIDs -  +std::map< int, std::vector< int > > childIDs +  ShootParameters shoot_parameters   std::string shoot_type_label @@ -206,7 +208,7 @@

Detailed Description

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Constructor & Destructor Documentation

◆ Shoot()

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Returns
Number of phytomers in the shoot after the new phytomer is appended
-

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Returns
false if the bud dies, true if the bud survives and will produce a new shoot.
-

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Returns
Number of epicormic shoots to be produced; position of the epicormic shoot as a fraction of the shoot's length
-

Definition at line 1821 of file PlantArchitecture.cpp.

+

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+ + + + +

◆ sumShootLeafArea()

+ +
+
+ + + + + + + +
float Shoot::sumShootLeafArea (uint start_node_index = 0) const
+
+ +

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- -

◆ childIDs

+ +

◆ childIDs

- +
std::map<int,int> Shoot::childIDsstd::map<int,std::vector<int> > Shoot::childIDs
-

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diff --git a/doc/html/struct_shoot_parameters.html b/doc/html/struct_shoot_parameters.html index 963f4f162..90791186c 100644 --- a/doc/html/struct_shoot_parameters.html +++ b/doc/html/struct_shoot_parameters.html @@ -38,7 +38,7 @@ Logo -
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 v1.3.20
@@ -126,6 +126,10 @@   RandomParameter_float internode_radius_initial   +RandomParameter_float internode_radius_max +  +RandomParameter_float girth_area_factor +  RandomParameter_float insertion_angle_tip   RandomParameter_float insertion_angle_decay_rate @@ -150,10 +154,6 @@   RandomParameter_float elongation_rate   -RandomParameter_float girth_growth_rate -  -RandomParameter_float internode_radius_max -  RandomParameter_float vegetative_bud_break_probability   RandomParameter_int max_terminal_floral_buds @@ -180,7 +180,7 @@

Detailed Description

-

Definition at line 504 of file PlantArchitecture.h.

+

Definition at line 517 of file PlantArchitecture.h.

Constructor & Destructor Documentation

◆ ShootParameters() [1/2]

@@ -199,7 +199,7 @@

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+

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- -

◆ girth_growth_rate

+ +

◆ girth_area_factor

- +
RandomParameter_float ShootParameters::girth_growth_rateRandomParameter_float ShootParameters::girth_area_factor
-

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diff --git a/doc/html/struct_shx.html b/doc/html/struct_shx.html index 1ac3a728b..44fa84e14 100644 --- a/doc/html/struct_shx.html +++ b/doc/html/struct_shx.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
diff --git a/doc/html/struct_sorghum_canopy_parameters.html b/doc/html/struct_sorghum_canopy_parameters.html index 5126ed34a..020583a2f 100644 --- a/doc/html/struct_sorghum_canopy_parameters.html +++ b/doc/html/struct_sorghum_canopy_parameters.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
@@ -108,12 +108,41 @@ More...

#include <CanopyGenerator.h>

+
+Inheritance diagram for SorghumCanopyParameters:
+
+
+ + +BaseCanopyParameters + +
+ + + + + + + + + + + + + + + + + + + +

Public Member Functions

 SorghumCanopyParameters ()
 Default constructor.
 
 SorghumCanopyParameters (const pugi::xml_node canopy_node)
 
void readParametersFromXML (const pugi::xml_node canopy_node)
 Sets canopy parameters from the given XML node.
 
void buildPlant (CanopyGenerator &canopy_generator, helios::vec3 origin) override
 Makes the given Canopy generator build a single plant of our canopy type with our parameters at the given position.
 
void buildCanopy (CanopyGenerator &canopy_generator) override
 Makes the given Canopy generator build a canopy of our type with our parameters.
 
- Public Member Functions inherited from BaseCanopyParameters
 BaseCanopyParameters ()
 Default constructor.
 
 BaseCanopyParameters (const pugi::xml_node canopy_node)
 
void readParametersFromXML (const pugi::xml_node canopy_node)
 Sets canopy parameters from the given XML node.
 
@@ -300,17 +329,21 @@ - - - + + + + + + +

Data Fields

helios::int2 plant_count
 Number of crowns/plants in the x- and y-directions.
 
helios::vec3 canopy_origin
 Cartesian (x,y,z) coordinate of the bottom center point of the canopy (i.e., specifying z=0 places the bottom surface of the canopy at z=0.
 
- Data Fields inherited from BaseCanopyParameters
helios::vec3 canopy_origin
 Cartesian (x,y,z) coordinate of the bottom center point of the canopy (i.e., specifying z=0 places the bottom surface of the canopy at z=0).
 
float canopy_rotation
 Azimuthal rotation of the canopy about the canopy origin. Note that if canopy_rotation is not equal to zero, the plant_spacing and plant_count parameters are defined in the x- and y-directions before rotation.
 

Detailed Description

Parameters defining Sorghum plant canopy.

-

Definition at line 722 of file CanopyGenerator.h.

+

Definition at line 764 of file CanopyGenerator.h.

Constructor & Destructor Documentation

-

◆ SorghumCanopyParameters()

+

◆ SorghumCanopyParameters() [1/2]

@@ -326,29 +359,130 @@

Definition at line 451 of file CanopyGenerator.cpp.

+

Definition at line 1309 of file CanopyGenerator.cpp.

-

Field Documentation

- -

◆ canopy_origin

+ +

◆ SorghumCanopyParameters() [2/2]

+ +
+
+ + + + + + + +
SorghumCanopyParameters::SorghumCanopyParameters (const pugi::xml_node canopy_node)
+
+
Parameters
+ + +
[in]canopy_nodeXML node containing the canopy parameters
+
+
+ +

Definition at line 1441 of file CanopyGenerator.cpp.

+ +
+
+

Member Function Documentation

+ +

◆ buildCanopy()

+ +
+
+ + + + + +
+ + + + + + + +
void SorghumCanopyParameters::buildCanopy (CanopyGenerator & canopy_generator)
+ 		+overridevirtual
+
+ +

Makes the given Canopy generator build a canopy of our type with our parameters.

+ +

Implements BaseCanopyParameters.

+ +

Definition at line 1763 of file CanopyGenerator.cpp.

+ +
+
+ +

◆ buildPlant()

+ + + + + +
- + + + + + + + +
helios::vec3 SorghumCanopyParameters::canopy_originvoid SorghumCanopyParameters::buildPlant (CanopyGenerator & canopy_generator,
helios::vec3 origin )
+ 		+overridevirtual
-

Cartesian (x,y,z) coordinate of the bottom center point of the canopy (i.e., specifying z=0 places the bottom surface of the canopy at z=0.

+

Makes the given Canopy generator build a single plant of our canopy type with our parameters at the given position.

+ +

Implements BaseCanopyParameters.

-

Definition at line 922 of file CanopyGenerator.h.

+

Definition at line 1759 of file CanopyGenerator.cpp.

+ +

◆ readParametersFromXML()

+ +
+
+ + + + + + + +
void SorghumCanopyParameters::readParametersFromXML (const pugi::xml_node canopy_node)
+
+ +

Sets canopy parameters from the given XML node.

+
Parameters
+ + +
[in]canopy_nodeXML node containing the canopy parameters
+
+
+ +

Definition at line 1445 of file CanopyGenerator.cpp.

+ +
+
+

Field Documentation

◆ plant_count

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+

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diff --git a/doc/html/struct_sorghum_canopy_parameters.png b/doc/html/struct_sorghum_canopy_parameters.png new file mode 100644 index 000000000..295e6f981 Binary files /dev/null and b/doc/html/struct_sorghum_canopy_parameters.png differ diff --git a/doc/html/struct_spherical_crowns_canopy_parameters.html b/doc/html/struct_spherical_crowns_canopy_parameters.html index acae7489f..62f907c4c 100644 --- a/doc/html/struct_spherical_crowns_canopy_parameters.html +++ b/doc/html/struct_spherical_crowns_canopy_parameters.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
@@ -108,12 +108,41 @@ More...

#include <CanopyGenerator.h>

+
+Inheritance diagram for SphericalCrownsCanopyParameters:
+
+
+ + +BaseCanopyParameters + +
+ + + + + + + + + + + + + + + + + + + +

Public Member Functions

 SphericalCrownsCanopyParameters ()
 Default constructor.
 
 SphericalCrownsCanopyParameters (const pugi::xml_node canopy_node)
 
void readParametersFromXML (const pugi::xml_node canopy_node)
 Sets canopy parameters from the given XML node.
 
void buildPlant (CanopyGenerator &canopy_generator, helios::vec3 origin) override
 Makes the given Canopy generator build a single plant of our canopy type with our parameters at the given position.
 
void buildCanopy (CanopyGenerator &canopy_generator) override
 Makes the given Canopy generator build a canopy of our type with our parameters.
 
- Public Member Functions inherited from BaseCanopyParameters
 BaseCanopyParameters ()
 Default constructor.
 
 BaseCanopyParameters (const pugi::xml_node canopy_node)
 
void readParametersFromXML (const pugi::xml_node canopy_node)
 Sets canopy parameters from the given XML node.
 
@@ -147,22 +176,23 @@ - - - - - - + + + + + + +

Data Fields

helios::int2 plant_count
 Number of crowns/plants in the x- and y-directions.
 
helios::vec3 canopy_origin
 Cartesian (x,y,z) coordinate of the bottom center point of the canopy (i.e., specifying z=0 places the bottom surface of the canopy at z=0).
 
float canopy_rotation
 Azimuthal rotation of the canopy about the canopy origin. Note that if canopy_rotation is not equal to zero, the plant_spacing and plant_count parameters are defined in the x- and y-directions before rotation.
 
std::vector< float > leaf_angle_PDF
 
- Data Fields inherited from BaseCanopyParameters
helios::vec3 canopy_origin
 Cartesian (x,y,z) coordinate of the bottom center point of the canopy (i.e., specifying z=0 places the bottom surface of the canopy at z=0).
 
float canopy_rotation
 Azimuthal rotation of the canopy about the canopy origin. Note that if canopy_rotation is not equal to zero, the plant_spacing and plant_count parameters are defined in the x- and y-directions before rotation.
 

Detailed Description

Parameters defining the canopy with spherical crowns.

-

Definition at line 64 of file CanopyGenerator.h.

+

Definition at line 113 of file CanopyGenerator.h.

Constructor & Destructor Documentation

-

◆ SphericalCrownsCanopyParameters()

+

◆ SphericalCrownsCanopyParameters() [1/2]

@@ -178,62 +208,145 @@

Definition at line 43 of file CanopyGenerator.cpp.

+

Definition at line 135 of file CanopyGenerator.cpp.

-

Field Documentation

- -

◆ canopy_configuration

+ +

◆ SphericalCrownsCanopyParameters() [2/2]

- + + + +
std::string SphericalCrownsCanopyParameters::canopy_configurationSphericalCrownsCanopyParameters::SphericalCrownsCanopyParameters (const pugi::xml_node canopy_node)
+
Parameters
+ + +
[in]canopy_nodeXML node containing the canopy parameters
+
+
-

Specifies whether to use a uniformly spaced canopy (canopy_configuration="uniform") or a randomly arranged canopy with non-overlapping crowns (canopy_configuration="random").

+

Definition at line 157 of file CanopyGenerator.cpp.

+ +
+
+

Member Function Documentation

+ +

◆ buildCanopy()

+ +
+
+ + + + + +
+ + + + + + + +
void SphericalCrownsCanopyParameters::buildCanopy (CanopyGenerator & canopy_generator)
+ 		+overridevirtual
+
+ +

Makes the given Canopy generator build a canopy of our type with our parameters.

+ +

Implements BaseCanopyParameters.

+ +

Definition at line 229 of file CanopyGenerator.cpp.

-

Definition at line 91 of file CanopyGenerator.h.

+
+
+ +

◆ buildPlant()

+ +
+
+ + + + + +
+ + + + + + + + + + + +
void SphericalCrownsCanopyParameters::buildPlant (CanopyGenerator & canopy_generator,
helios::vec3 origin )
+ 		+overridevirtual
+
+ +

Makes the given Canopy generator build a single plant of our canopy type with our parameters at the given position.

+ +

Implements BaseCanopyParameters.

+ +

Definition at line 225 of file CanopyGenerator.cpp.

- -

◆ canopy_origin

+ +

◆ readParametersFromXML()

- + + + +
helios::vec3 SphericalCrownsCanopyParameters::canopy_originvoid SphericalCrownsCanopyParameters::readParametersFromXML (const pugi::xml_node canopy_node)
-

Cartesian (x,y,z) coordinate of the bottom center point of the canopy (i.e., specifying z=0 places the bottom surface of the canopy at z=0).

+

Sets canopy parameters from the given XML node.

+
Parameters
+ + +
[in]canopy_nodeXML node containing the canopy parameters
+
+
-

Definition at line 100 of file CanopyGenerator.h.

+

Definition at line 161 of file CanopyGenerator.cpp.

- -

◆ canopy_rotation

+

Field Documentation

+ +

◆ canopy_configuration

- +
float SphericalCrownsCanopyParameters::canopy_rotationstd::string SphericalCrownsCanopyParameters::canopy_configuration
-

Azimuthal rotation of the canopy about the canopy origin. Note that if canopy_rotation is not equal to zero, the plant_spacing and plant_count parameters are defined in the x- and y-directions before rotation.

+

Specifies whether to use a uniformly spaced canopy (canopy_configuration="uniform") or a randomly arranged canopy with non-overlapping crowns (canopy_configuration="random").

-

Definition at line 103 of file CanopyGenerator.h.

+

Definition at line 157 of file CanopyGenerator.h.

@@ -251,7 +364,7 @@

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+

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-

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+

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@@ -285,7 +398,7 @@

-

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+

Definition at line 166 of file CanopyGenerator.h.

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diff --git a/doc/html/struct_spherical_crowns_canopy_parameters.png b/doc/html/struct_spherical_crowns_canopy_parameters.png new file mode 100644 index 000000000..65a3ea3bf Binary files /dev/null and b/doc/html/struct_spherical_crowns_canopy_parameters.png differ diff --git a/doc/html/struct_split_grapevine_parameters.html b/doc/html/struct_split_grapevine_parameters.html index 18f0d0a7b..df723dd17 100644 --- a/doc/html/struct_split_grapevine_parameters.html +++ b/doc/html/struct_split_grapevine_parameters.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
@@ -108,103 +108,216 @@ More...

#include <CanopyGenerator.h>

+
+Inheritance diagram for SplitGrapevineParameters:
+
+
+ + +BaseGrapeVineParameters +BaseCanopyParameters + +
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + +

Public Member Functions

 SplitGrapevineParameters ()
 Default constructor.
 
 SplitGrapevineParameters (const pugi::xml_node canopy_node)
 
void readParametersFromXML (const pugi::xml_node canopy_node)
 Sets canopy parameters from the given XML node.
 
void buildPlant (CanopyGenerator &canopy_generator, helios::vec3 origin) override
 Makes the given Canopy generator build a single plant of our canopy type with our parameters at the given position.
 
void buildCanopy (CanopyGenerator &canopy_generator) override
 Makes the given Canopy generator build a canopy of our type with our parameters.
 
- Public Member Functions inherited from BaseGrapeVineParameters
 BaseGrapeVineParameters ()
 Default constructor.
 
 BaseGrapeVineParameters (const pugi::xml_node canopy_node)
 
void readParametersFromXML (const pugi::xml_node canopy_node)
 Sets canopy parameters from the given XML node.
 
- Public Member Functions inherited from BaseCanopyParameters
 BaseCanopyParameters ()
 Default constructor.
 
 BaseCanopyParameters (const pugi::xml_node canopy_node)
 
void readParametersFromXML (const pugi::xml_node canopy_node)
 Sets canopy parameters from the given XML node.
 
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - + + + + + + - - - - - - - - - - - - - - - - - - - - - - - - - - - - - + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +

Data Fields

float leaf_width
 Maximum width of leaves. Leaf width increases logarithmically from the shoot tip, so leaf_width is the width at the base of the shoot.
 
helios::int2 leaf_subdivisions
 Number of sub-division segments per leaf.
 
std::string leaf_texture_file
 Path to texture map file for leaves.
 
std::string wood_texture_file
 Path to texture map file for trunks/branches.
 
int wood_subdivisions
 Number of radial subdivisions for trunk/cordon/shoot tubes.
 
float plant_spacing
 Spacing between adjacent plants along the row direction.
 
float row_spacing
 Spacing between plant rows.
 
float trunk_height
 Distance between the ground and top of trunks.
 
float trunk_radius
 Radius of the trunk at the widest point.
 
float cordon_height
 Distance between the ground and cordon. Note - must be greater than or equal to the trunk height.
 
float cordon_radius
 Radius of cordon branches.
 
float cordon_spacing
 Spacing between two opposite cordons.
 
float shoot_length
 Length of shoots.
 
float shoot_radius
 Radius of shoot branches.
 
uint shoots_per_cordon
 Number of shoots on each cordon.
 
float cordon_spacing_spread
 Spread value for the cordon spacing. With any new canopy or plant generation, the cordon spacing would be between cordon_spacing - cordon_spacing_spread and cordon_spacing + cordon_spacing_spread.
 
float shoot_angle_base
 Average angle of the shoot at the base (shoot_angle_base=0 points shoots upward; shoot_angle_base=M_PI points shoots downward and makes a Geneva Double Curtain)
 
float shoot_angle_base_spread
 Spread value for the base shoot angle. With any new canopy or plant generation, the base shoot angle would be between shoot_angle_base - shoot_angle_base_spread and shoot_angle_base + shoot_angle_base_spread.
 
float shoot_angle_tip
 Average angle of the shoot at the tip (shoot_angle=0 is a completely vertical shoot; shoot_angle=M_PI is a downward-pointing shoot)
 
float leaf_spacing_fraction
 Spacing between adjacent leaves as a fraction of the local leaf width. E.g., leaf_spacing_fraction = 1 would give a leaf spacing equal to the leaf width.
 
helios::int2 plant_count
 Number of crowns/plants in the x- and y-directions.
 
helios::vec3 canopy_origin
 Cartesian (x,y,z) coordinate of the bottom center point of the canopy (i.e., specifying z=0 places the bottom surface of the canopy at z=0).
 
float canopy_rotation
 Azimuthal rotation of the canopy about the canopy origin. Note that if canopy_rotation is not equal to zero, the plant_spacing and plant_count parameters are defined in the x- and y-directions before rotation.
 
float grape_radius
 Radius of grape berries.
 
float cluster_radius
 Maximum horizontal radius of grape clusters.
 
float cluster_height_max
 Maximum height of grape clusters along the shoot as a fraction of the total shoot length.
 
helios::RGBcolor grape_color
 Color of grapes.
 
uint grape_subdivisions
 Number of azimuthal and zenithal subdivisions making up berries (will result in roughly grape_subdivisions^2 triangles per grape berry)
 
std::vector< float > leaf_angle_PDF
 
float shoot_angle_tip_spread
 Spread value for the base shoot angle. With any new canopy or plant generation, the base shoot angle would be between shoot_angle_tip - shoot_angle_tip_spread and shoot_angle_tip + shoot_angle_tip_spread.
 
- Data Fields inherited from BaseGrapeVineParameters
float leaf_width
 Maximum width of leaves. Leaf width increases logarithmically from the shoot tip, so leaf_width is the width at the base of the shoot.
 
float leaf_width_spread
 Spread value for the maximum leaf width. With any new canopy or plant generation, the maximum leaf width would be between leaf_width - leaf_width_spread and leaf_width + leaf_width_spread.
 
helios::int2 leaf_subdivisions
 Number of sub-division segments per leaf.
 
std::string leaf_texture_file
 Path to texture map file for leaves.
 
std::string wood_texture_file
 Path to texture map file for trunks/branches.
 
int wood_subdivisions
 Number of radial subdivisions for trunk/cordon/shoot tubes.
 
int wood_subdivisions_spread
 Spread value for the number of wood subdivisions. With any new canopy or plant generation, the maximum number of wood subdivisions would be between wood_subdivisions - wood_subdivisions_spread and wood_subdivisions + wood_subdivisions_spread.
 
float dead_probability
 Probability for a plant to be dead, i.e. without any leaves or grapes.
 
float missing_plant_probability
 Probability for a plant to be missing.
 
float plant_spacing
 Spacing between adjacent plants along the row direction.
 
float plant_spacing_spread
 Spread value for the plant spacing. The spacing between adjacent plants along a row would vary between plant_spacing - plant_spacing_spread and plant_spacing + plant_spacing_spread.
 
float row_spacing
 Spacing between plant rows.
 
float row_spacing_spread
 Spread value for the row spacing. This allows to vary the alignment of plants along a row. The spacing between two plants of adjacent rows would be between row_spacing - row_spacing_spread and row_spacing + row_spacing_spread.
 
float trunk_height
 Distance between the ground and top of trunks.
 
float trunk_height_spread
 Spread value for the trunk height. With any new canopy or plant generation, the trunk height would be between trunk_height - trunk_height_spread and trunk_height + trunk_height_spread.
 
float trunk_radius
 Radius of the trunk at the widest point.
 
float trunk_radius_spread
 Spread value for the trunk radius. With any new canopy or plant generation, the trunk radius would be between trunk_radius - trunk_radius_spread and trunk_radius + trunk_radius_spread.
 
float cordon_length
 Length of the cordons. By default, half the plant spacing.
 
float cordon_length_spread
 Spread value for the cordon length. With any new canopy or plant generation, the cordon length would be between cordon_length - cordon_length_spread and cordon_length + cordon_length_spread.
 
float cordon_height
 Distance between the ground and cordon. Note - must be greater than or equal to the trunk height.
 
float cordon_height_spread
 Spread value for the cordon height. With any new canopy or plant generation, the cordon height would be between cordon_height - cordon_height_spread and cordon_height + cordon_height_spread.
 
float cordon_radius
 Radius of cordon branches.
 
float cordon_radius_spread
 Spread value for the cordon radius. With any new canopy or plant generation, the cordon radius would be between cordon_radius - cordon_radius_spread and cordon_radius + cordon_radius_spread.
 
float shoot_length
 Length of shoots.
 
float shoot_length_spread
 Spread value for the shoot length. With any new canopy or plant generation, the shoot length would be between shoot_length - shoot_length_spread and shoot_length + shoot_length_spread.
 
float shoot_radius
 Radius of shoot branches.
 
float shoot_radius_spread
 Spread value for the shoot radius. With any new canopy or plant generation, the shoot radius would be between shoot_radius - shoot_radius_spread and shoot_radius + shoot_radius_spread.
 
uint shoots_per_cordon
 Number of shoots on each cordon.
 
uint shoots_per_cordon_spread
 Spread value for the number of shoots per cordon. With any new canopy or plant generation, the number of shoots per cordon would be between shoots_per_cordon - shoots_per_cordon_spread and shoots_per_cordon + shoots_per_cordon_spread.
 
float leaf_spacing_fraction
 Spacing between adjacent leaves as a fraction of the local leaf width. E.g., leaf_spacing_fraction = 1 would give a leaf spacing equal to the leaf width.
 
float leaf_spacing_fraction_spread
 Spread value for the leaf spacing fraction. With any new canopy or plant generation, the leaf spacing fraction would be between leaf_spacing_fraction - leaf_spacing_fraction_spread and leaf_spacing_fraction + leaf_spacing_fraction_spread.
 
helios::int2 plant_count
 Number of crowns/plants in the x- and y-directions.
 
float grape_radius
 Radius of grape berries.
 
float grape_radius_spread
 Spread value for the grape radius. With any new canopy or plant generation, the grape radius would be between grape_radius - grape_radius_spread and grape_radius + grape_radius_spread.
 
float cluster_radius
 Maximum horizontal radius of grape clusters.
 
float cluster_radius_spread
 Spread value for the cluster radius. With any new canopy or plant generation, the cluster radius would be between cluster_radius - cluster_radius_spread and cluster_radius + cluster_radius_spread.
 
float cluster_height_max
 Maximum height of grape clusters along the shoot as a fraction of the total shoot length.
 
float cluster_height_max_spread
 Spread value for the cluster height. With any new canopy or plant generation, the cluster height would be between cluster_height - cluster_height_spread and cluster_height + cluster_height_spread.
 
helios::RGBcolor grape_color
 Color of grapes.
 
uint grape_subdivisions
 Number of azimuthal and zenithal subdivisions making up berries (will result in roughly 2*(grape_subdivisions)^2 triangles per grape berry)
 
uint grape_subdivisions_spread
 Spread value for the number of grape subdivisions. With any new canopy or plant generation, the number of grape subdivisions would be between grape_subdivisions - grape_subdivisions_spread and grape_subdivisions + grape_subdivisions_spread.
 
std::vector< float > leaf_angle_PDF
 
float canopy_rotation_spread
 Spread value for the canopy rotation. With any new canopy or plant generation, the canopy/plant rotation would be between canopy_rotation - canopy_rotation_spread and canopy_rotation + canopy_rotation_spread.
 
- Data Fields inherited from BaseCanopyParameters
helios::vec3 canopy_origin
 Cartesian (x,y,z) coordinate of the bottom center point of the canopy (i.e., specifying z=0 places the bottom surface of the canopy at z=0).
 
float canopy_rotation
 Azimuthal rotation of the canopy about the canopy origin. Note that if canopy_rotation is not equal to zero, the plant_spacing and plant_count parameters are defined in the x- and y-directions before rotation.
 

Detailed Description

Parameters defining the grapevine canopy with a split (quad) trellis.

-

Definition at line 241 of file CanopyGenerator.h.

+

Definition at line 398 of file CanopyGenerator.h.

Constructor & Destructor Documentation

-

◆ SplitGrapevineParameters()

+

◆ SplitGrapevineParameters() [1/2]

@@ -220,119 +333,130 @@

Definition at line 147 of file CanopyGenerator.cpp.

+

Definition at line 669 of file CanopyGenerator.cpp.

-

Field Documentation

- -

◆ canopy_origin

+ +

◆ SplitGrapevineParameters() [2/2]

- + + + +
helios::vec3 SplitGrapevineParameters::canopy_originSplitGrapevineParameters::SplitGrapevineParameters (const pugi::xml_node canopy_node)
+
Parameters
+ + +
[in]canopy_nodeXML node containing the canopy parameters
+
+
-

Cartesian (x,y,z) coordinate of the bottom center point of the canopy (i.e., specifying z=0 places the bottom surface of the canopy at z=0).

- -

Definition at line 304 of file CanopyGenerator.h.

+

Definition at line 712 of file CanopyGenerator.cpp.

- -

◆ canopy_rotation

+

Member Function Documentation

+ +

◆ buildCanopy()

+ + + + + +
- + + + +
float SplitGrapevineParameters::canopy_rotationvoid SplitGrapevineParameters::buildCanopy (CanopyGenerator & canopy_generator)
+ 		+overridevirtual
-

Azimuthal rotation of the canopy about the canopy origin. Note that if canopy_rotation is not equal to zero, the plant_spacing and plant_count parameters are defined in the x- and y-directions before rotation.

+

Makes the given Canopy generator build a canopy of our type with our parameters.

-

Definition at line 307 of file CanopyGenerator.h.

+

Reimplemented from BaseGrapeVineParameters.

-
-
- -

◆ cluster_height_max

- -
-
- - - - -
float SplitGrapevineParameters::cluster_height_max
-
- -

Maximum height of grape clusters along the shoot as a fraction of the total shoot length.

- -

Definition at line 316 of file CanopyGenerator.h.

+

Definition at line 739 of file CanopyGenerator.cpp.

- -

◆ cluster_radius

+ +

◆ buildPlant()

+ + + + + +
- + + + -
float SplitGrapevineParameters::cluster_radiusvoid SplitGrapevineParameters::buildPlant (CanopyGenerator & canopy_generator,
-
- -

Maximum horizontal radius of grape clusters.

- -

Definition at line 313 of file CanopyGenerator.h.

- -
- - -

◆ cordon_height

- -
-
- - + + +
float SplitGrapevineParameters::cordon_heighthelios::vec3 origin )
+
+overridevirtual
-

Distance between the ground and cordon. Note - must be greater than or equal to the trunk height.

+

Makes the given Canopy generator build a single plant of our canopy type with our parameters at the given position.

+ +

Reimplemented from BaseGrapeVineParameters.

-

Definition at line 274 of file CanopyGenerator.h.

+

Definition at line 735 of file CanopyGenerator.cpp.

- -

◆ cordon_radius

+ +

◆ readParametersFromXML()

- + + + +
float SplitGrapevineParameters::cordon_radiusvoid SplitGrapevineParameters::readParametersFromXML (const pugi::xml_node canopy_node)
-

Radius of cordon branches.

+

Sets canopy parameters from the given XML node.

+
Parameters
+ + +
[in]canopy_nodeXML node containing the canopy parameters
+
+
-

Definition at line 277 of file CanopyGenerator.h.

+

Definition at line 716 of file CanopyGenerator.cpp.

+

Field Documentation

◆ cordon_spacing

@@ -347,203 +471,25 @@

Definition at line 280 of file CanopyGenerator.h.

- -

- - -

◆ grape_color

- -
-
- - - - -
helios::RGBcolor SplitGrapevineParameters::grape_color
-
- -

Color of grapes.

- -

Definition at line 319 of file CanopyGenerator.h.

- -
-
- -

◆ grape_radius

- -
-
- - - - -
float SplitGrapevineParameters::grape_radius
-
- -

Radius of grape berries.

- -

Definition at line 310 of file CanopyGenerator.h.

- -
-
- -

◆ grape_subdivisions

- -
-
- - - - -
uint SplitGrapevineParameters::grape_subdivisions
-
- -

Number of azimuthal and zenithal subdivisions making up berries (will result in roughly grape_subdivisions^2 triangles per grape berry)

- -

Definition at line 322 of file CanopyGenerator.h.

- -
-
- -

◆ leaf_angle_PDF

- -
-
- - - - -
std::vector<float> SplitGrapevineParameters::leaf_angle_PDF
-
- -

Definition at line 325 of file CanopyGenerator.h.

- -
-
- -

◆ leaf_spacing_fraction

- -
-
- - - - -
float SplitGrapevineParameters::leaf_spacing_fraction
-
- -

Spacing between adjacent leaves as a fraction of the local leaf width. E.g., leaf_spacing_fraction = 1 would give a leaf spacing equal to the leaf width.

- -

Definition at line 298 of file CanopyGenerator.h.

- -
-
- -

◆ leaf_subdivisions

- -
-
- - - - -
helios::int2 SplitGrapevineParameters::leaf_subdivisions
-
- -

Number of sub-division segments per leaf.

- -

Definition at line 250 of file CanopyGenerator.h.

- -
-
- -

◆ leaf_texture_file

- -
-
- - - - -
std::string SplitGrapevineParameters::leaf_texture_file
-
- -

Path to texture map file for leaves.

- -

Definition at line 253 of file CanopyGenerator.h.

+

Definition at line 421 of file CanopyGenerator.h.

- -

◆ leaf_width

+ +

◆ cordon_spacing_spread

- +
float SplitGrapevineParameters::leaf_widthfloat SplitGrapevineParameters::cordon_spacing_spread
-

Maximum width of leaves. Leaf width increases logarithmically from the shoot tip, so leaf_width is the width at the base of the shoot.

+

Spread value for the cordon spacing. With any new canopy or plant generation, the cordon spacing would be between cordon_spacing - cordon_spacing_spread and cordon_spacing + cordon_spacing_spread.

-

Definition at line 247 of file CanopyGenerator.h.

- -
-
- -

◆ plant_count

- -
-
- - - - -
helios::int2 SplitGrapevineParameters::plant_count
-
- -

Number of crowns/plants in the x- and y-directions.

- -

Definition at line 301 of file CanopyGenerator.h.

- -
-
- -

◆ plant_spacing

- -
-
- - - - -
float SplitGrapevineParameters::plant_spacing
-
- -

Spacing between adjacent plants along the row direction.

- -

Definition at line 262 of file CanopyGenerator.h.

- -
-
- -

◆ row_spacing

- -
-
- - - - -
float SplitGrapevineParameters::row_spacing
-
- -

Spacing between plant rows.

- -

Definition at line 265 of file CanopyGenerator.h.

+

Definition at line 423 of file CanopyGenerator.h.

@@ -561,151 +507,61 @@

Definition at line 292 of file CanopyGenerator.h.

+

Definition at line 426 of file CanopyGenerator.h.

- -

◆ shoot_angle_tip

+ +

◆ shoot_angle_base_spread

- +
float SplitGrapevineParameters::shoot_angle_tipfloat SplitGrapevineParameters::shoot_angle_base_spread
-

Average angle of the shoot at the tip (shoot_angle=0 is a completely vertical shoot; shoot_angle=M_PI is a downward-pointing shoot)

+

Spread value for the base shoot angle. With any new canopy or plant generation, the base shoot angle would be between shoot_angle_base - shoot_angle_base_spread and shoot_angle_base + shoot_angle_base_spread.

-

Definition at line 295 of file CanopyGenerator.h.

+

Definition at line 428 of file CanopyGenerator.h.

- -

◆ shoot_length

- -
-
- - - - -
float SplitGrapevineParameters::shoot_length
-
- -

Length of shoots.

- -

Definition at line 283 of file CanopyGenerator.h.

- -
-
- -

◆ shoot_radius

- -
-
- - - - -
float SplitGrapevineParameters::shoot_radius
-
- -

Radius of shoot branches.

- -

Definition at line 286 of file CanopyGenerator.h.

- -
-
- -

◆ shoots_per_cordon

- -
-
- - - - -
uint SplitGrapevineParameters::shoots_per_cordon
-
- -

Number of shoots on each cordon.

- -

Definition at line 289 of file CanopyGenerator.h.

- -
-
- -

◆ trunk_height

- -
-
- - - - -
float SplitGrapevineParameters::trunk_height
-
- -

Distance between the ground and top of trunks.

- -

Definition at line 268 of file CanopyGenerator.h.

- -
-
- -

◆ trunk_radius

- -
-
- - - - -
float SplitGrapevineParameters::trunk_radius
-
- -

Radius of the trunk at the widest point.

- -

Definition at line 271 of file CanopyGenerator.h.

- -
-
- -

◆ wood_subdivisions

+ +

◆ shoot_angle_tip

- +
int SplitGrapevineParameters::wood_subdivisionsfloat SplitGrapevineParameters::shoot_angle_tip
-

Number of radial subdivisions for trunk/cordon/shoot tubes.

+

Average angle of the shoot at the tip (shoot_angle=0 is a completely vertical shoot; shoot_angle=M_PI is a downward-pointing shoot)

-

Definition at line 259 of file CanopyGenerator.h.

+

Definition at line 431 of file CanopyGenerator.h.

- -

◆ wood_texture_file

+ +

◆ shoot_angle_tip_spread

- +
std::string SplitGrapevineParameters::wood_texture_filefloat SplitGrapevineParameters::shoot_angle_tip_spread
-

Path to texture map file for trunks/branches.

+

Spread value for the base shoot angle. With any new canopy or plant generation, the base shoot angle would be between shoot_angle_tip - shoot_angle_tip_spread and shoot_angle_tip + shoot_angle_tip_spread.

-

Definition at line 256 of file CanopyGenerator.h.

+

Definition at line 433 of file CanopyGenerator.h.

diff --git a/doc/html/struct_split_grapevine_parameters.png b/doc/html/struct_split_grapevine_parameters.png new file mode 100644 index 000000000..7320ac96b Binary files /dev/null and b/doc/html/struct_split_grapevine_parameters.png differ diff --git a/doc/html/struct_strawberry_parameters.html b/doc/html/struct_strawberry_parameters.html index 53f6b5b3f..03bc9a563 100644 --- a/doc/html/struct_strawberry_parameters.html +++ b/doc/html/struct_strawberry_parameters.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
@@ -108,12 +108,41 @@ More...

#include <CanopyGenerator.h>

+
+Inheritance diagram for StrawberryParameters:
+
+
+ + +BaseCanopyParameters + +
+ + + + + + + + + + + + + + + + + + + +

Public Member Functions

 StrawberryParameters ()
 Default constructor.
 
 StrawberryParameters (const pugi::xml_node canopy_node)
 
void readParametersFromXML (const pugi::xml_node canopy_node)
 Sets canopy parameters from the given XML node.
 
void buildPlant (CanopyGenerator &canopy_generator, helios::vec3 origin) override
 Makes the given Canopy generator build a single plant of our canopy type with our parameters at the given position.
 
void buildCanopy (CanopyGenerator &canopy_generator) override
 Makes the given Canopy generator build a canopy of our type with our parameters.
 
- Public Member Functions inherited from BaseCanopyParameters
 BaseCanopyParameters ()
 Default constructor.
 
 BaseCanopyParameters (const pugi::xml_node canopy_node)
 
void readParametersFromXML (const pugi::xml_node canopy_node)
 Sets canopy parameters from the given XML node.
 
@@ -150,12 +179,6 @@ - - - - - - @@ -168,14 +191,21 @@ + + + + + + +

Data Fields

helios::int2 plant_count
 Number of crowns/plants in the x- and y-directions.
 
helios::vec3 canopy_origin
 Cartesian (x,y,z) coordinate of the bottom center point of the canopy (i.e., specifying z=0 places the bottom surface of the canopy at z=0).
 
float canopy_rotation
 Azimuthal rotation of the canopy about the canopy origin. Note that if canopy_rotation is not equal to zero, the plant_spacing and plant_count parameters are defined in the x- and y-directions before rotation.
 
float fruit_radius
 Radius of strawberry fruit.
 
float clusters_per_stem
 Number of strawberry clusters per plant stem. Clusters randomly have 1, 2, or 3 berries.
 
- Data Fields inherited from BaseCanopyParameters
helios::vec3 canopy_origin
 Cartesian (x,y,z) coordinate of the bottom center point of the canopy (i.e., specifying z=0 places the bottom surface of the canopy at z=0).
 
float canopy_rotation
 Azimuthal rotation of the canopy about the canopy origin. Note that if canopy_rotation is not equal to zero, the plant_spacing and plant_count parameters are defined in the x- and y-directions before rotation.
 

Detailed Description

Parameters defining the strawberry plant canopy.

-

Definition at line 606 of file CanopyGenerator.h.

+

Definition at line 626 of file CanopyGenerator.h.

Constructor & Destructor Documentation

-

◆ StrawberryParameters()

+

◆ StrawberryParameters() [1/2]

@@ -191,47 +221,130 @@

Definition at line 377 of file CanopyGenerator.cpp.

+

Definition at line 1080 of file CanopyGenerator.cpp.

-

Field Documentation

- -

◆ canopy_origin

+ +

◆ StrawberryParameters() [2/2]

+ +
+
+ + + + + + + +
StrawberryParameters::StrawberryParameters (const pugi::xml_node canopy_node)
+
+
Parameters
+ + +
[in]canopy_nodeXML node containing the canopy parameters
+
+
+ +

Definition at line 1114 of file CanopyGenerator.cpp.

+ +
+
+

Member Function Documentation

+ +

◆ buildCanopy()

+ +
+
+ + + + + +
+ + + + + + + +
void StrawberryParameters::buildCanopy (CanopyGenerator & canopy_generator)
+ 		+overridevirtual
+
+ +

Makes the given Canopy generator build a canopy of our type with our parameters.

+ +

Implements BaseCanopyParameters.

+ +

Definition at line 1196 of file CanopyGenerator.cpp.

+ +
+
+ +

◆ buildPlant()

+ + + + + +
- + + + + + + + +
helios::vec3 StrawberryParameters::canopy_originvoid StrawberryParameters::buildPlant (CanopyGenerator & canopy_generator,
helios::vec3 origin )
+ 		+overridevirtual
-

Cartesian (x,y,z) coordinate of the bottom center point of the canopy (i.e., specifying z=0 places the bottom surface of the canopy at z=0).

+

Makes the given Canopy generator build a single plant of our canopy type with our parameters at the given position.

+ +

Implements BaseCanopyParameters.

-

Definition at line 645 of file CanopyGenerator.h.

+

Definition at line 1192 of file CanopyGenerator.cpp.

- -

◆ canopy_rotation

+ +

◆ readParametersFromXML()

- + + + +
float StrawberryParameters::canopy_rotationvoid StrawberryParameters::readParametersFromXML (const pugi::xml_node canopy_node)
-

Azimuthal rotation of the canopy about the canopy origin. Note that if canopy_rotation is not equal to zero, the plant_spacing and plant_count parameters are defined in the x- and y-directions before rotation.

+

Sets canopy parameters from the given XML node.

+
Parameters
+ + +
[in]canopy_nodeXML node containing the canopy parameters
+
+
-

Definition at line 648 of file CanopyGenerator.h.

+

Definition at line 1118 of file CanopyGenerator.cpp.

+

Field Documentation

◆ clusters_per_stem

@@ -246,7 +359,7 @@

Definition at line 660 of file CanopyGenerator.h.

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Definition at line 664 of file CanopyGenerator.h.

diff --git a/doc/html/struct_strawberry_parameters.png b/doc/html/struct_strawberry_parameters.png new file mode 100644 index 000000000..fac0f6d55 Binary files /dev/null and b/doc/html/struct_strawberry_parameters.png differ diff --git a/doc/html/struct_tomato_parameters.html b/doc/html/struct_tomato_parameters.html index 3a5483ee7..e9e865e0d 100644 --- a/doc/html/struct_tomato_parameters.html +++ b/doc/html/struct_tomato_parameters.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
@@ -108,12 +108,41 @@ More...

#include <CanopyGenerator.h>

+
+Inheritance diagram for TomatoParameters:
+
+
+ + +BaseCanopyParameters + +
+ + + + + + + + + + + + + + + + + + + +

Public Member Functions

 TomatoParameters ()
 Default constructor.
 
 TomatoParameters (const pugi::xml_node canopy_node)
 
void readParametersFromXML (const pugi::xml_node canopy_node)
 Sets canopy parameters from the given XML node.
 
void buildPlant (CanopyGenerator &canopy_generator, helios::vec3 origin) override
 Makes the given Canopy generator build a single plant of our canopy type with our parameters at the given position.
 
void buildCanopy (CanopyGenerator &canopy_generator) override
 Makes the given Canopy generator build a canopy of our type with our parameters.
 
- Public Member Functions inherited from BaseCanopyParameters
 BaseCanopyParameters ()
 Default constructor.
 
 BaseCanopyParameters (const pugi::xml_node canopy_node)
 
void readParametersFromXML (const pugi::xml_node canopy_node)
 Sets canopy parameters from the given XML node.
 
@@ -144,12 +173,6 @@ - - - - - - @@ -159,14 +182,21 @@ + + + + + + +

Data Fields

helios::int2 plant_count
 Number of crowns/plants in the x- and y-directions.
 
helios::vec3 canopy_origin
 Cartesian (x,y,z) coordinate of the bottom center point of the canopy (i.e., specifying z=0 places the bottom surface of the canopy at z=0).
 
float canopy_rotation
 Azimuthal rotation of the canopy about the canopy origin. Note that if canopy_rotation is not equal to zero, the plant_spacing and plant_count parameters are defined in the x- and y-directions before rotation.
 
float fruit_radius
 Radius of tomato fruit.
 
uint fruit_subdivisions
 Number of azimuthal and zenithal subdivisions making up fruit (will result in roughly fruit_subdivisions^2 triangles per fruit)
 
- Data Fields inherited from BaseCanopyParameters
helios::vec3 canopy_origin
 Cartesian (x,y,z) coordinate of the bottom center point of the canopy (i.e., specifying z=0 places the bottom surface of the canopy at z=0).
 
float canopy_rotation
 Azimuthal rotation of the canopy about the canopy origin. Note that if canopy_rotation is not equal to zero, the plant_spacing and plant_count parameters are defined in the x- and y-directions before rotation.
 

Detailed Description

Parameters defining the tomato plant canopy.

-

Definition at line 556 of file CanopyGenerator.h.

+

Definition at line 565 of file CanopyGenerator.h.

Constructor & Destructor Documentation

-

◆ TomatoParameters()

+

◆ TomatoParameters() [1/2]

@@ -182,47 +212,130 @@

Definition at line 345 of file CanopyGenerator.cpp.

+

Definition at line 975 of file CanopyGenerator.cpp.

-

Field Documentation

- -

◆ canopy_origin

+ +

◆ TomatoParameters() [2/2]

+ +
+
+ + + + + + + +
TomatoParameters::TomatoParameters (const pugi::xml_node canopy_node)
+
+
Parameters
+ + +
[in]canopy_nodeXML node containing the canopy parameters
+
+
+ +

Definition at line 1003 of file CanopyGenerator.cpp.

+ +
+
+

Member Function Documentation

+ +

◆ buildCanopy()

+ +
+
+ + + + + +
+ + + + + + + +
void TomatoParameters::buildCanopy (CanopyGenerator & canopy_generator)
+ 		+overridevirtual
+
+ +

Makes the given Canopy generator build a canopy of our type with our parameters.

+ +

Implements BaseCanopyParameters.

+ +

Definition at line 1076 of file CanopyGenerator.cpp.

+ +
+
+ +

◆ buildPlant()

+ + + + + +
- + + + + + + + +
helios::vec3 TomatoParameters::canopy_originvoid TomatoParameters::buildPlant (CanopyGenerator & canopy_generator,
helios::vec3 origin )
+ 		+overridevirtual
-

Cartesian (x,y,z) coordinate of the bottom center point of the canopy (i.e., specifying z=0 places the bottom surface of the canopy at z=0).

+

Makes the given Canopy generator build a single plant of our canopy type with our parameters at the given position.

-

Definition at line 589 of file CanopyGenerator.h.

+

Implements BaseCanopyParameters.

+ +

Definition at line 1072 of file CanopyGenerator.cpp.

- -

◆ canopy_rotation

+ +

◆ readParametersFromXML()

- + + + +
float TomatoParameters::canopy_rotationvoid TomatoParameters::readParametersFromXML (const pugi::xml_node canopy_node)
-

Azimuthal rotation of the canopy about the canopy origin. Note that if canopy_rotation is not equal to zero, the plant_spacing and plant_count parameters are defined in the x- and y-directions before rotation.

+

Sets canopy parameters from the given XML node.

+
Parameters
+ + +
[in]canopy_nodeXML node containing the canopy parameters
+
+
-

Definition at line 592 of file CanopyGenerator.h.

+

Definition at line 1007 of file CanopyGenerator.cpp.

+

Field Documentation

◆ fruit_color

@@ -237,7 +350,7 @@

Definition at line 598 of file CanopyGenerator.h.

+

Definition at line 618 of file CanopyGenerator.h.

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+

Definition at line 597 of file CanopyGenerator.h.

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Definition at line 574 of file CanopyGenerator.h.

+

Definition at line 600 of file CanopyGenerator.h.

diff --git a/doc/html/struct_tomato_parameters.png b/doc/html/struct_tomato_parameters.png new file mode 100644 index 000000000..633a1884a Binary files /dev/null and b/doc/html/struct_tomato_parameters.png differ diff --git a/doc/html/struct_triad.html b/doc/html/struct_triad.html index 878463a43..bb81a7045 100644 --- a/doc/html/struct_triad.html +++ b/doc/html/struct_triad.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
diff --git a/doc/html/struct_triangulation.html b/doc/html/struct_triangulation.html index df510b13b..a40908a18 100644 --- a/doc/html/struct_triangulation.html +++ b/doc/html/struct_triangulation.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
diff --git a/doc/html/struct_unilateral_grapevine_parameters.html b/doc/html/struct_unilateral_grapevine_parameters.html index f9aeebd5c..8e060d5fd 100644 --- a/doc/html/struct_unilateral_grapevine_parameters.html +++ b/doc/html/struct_unilateral_grapevine_parameters.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
@@ -98,8 +98,7 @@
-Public Member Functions | -Data Fields
+Public Member Functions
UnilateralGrapevineParameters Struct Reference
@@ -108,94 +107,198 @@ More...

#include <CanopyGenerator.h>

+
+Inheritance diagram for UnilateralGrapevineParameters:
+
+
+ + +BaseGrapeVineParameters +BaseCanopyParameters + +
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + +

Public Member Functions

 UnilateralGrapevineParameters ()
 Default constructor.
 
 UnilateralGrapevineParameters (const pugi::xml_node canopy_node)
 
void readParametersFromXML (const pugi::xml_node canopy_node)
 Sets canopy parameters from the given XML node.
 
void buildPlant (CanopyGenerator &canopy_generator, helios::vec3 origin) override
 Makes the given Canopy generator build a single plant of our canopy type with our parameters at the given position.
 
void buildCanopy (CanopyGenerator &canopy_generator) override
 Makes the given Canopy generator build a canopy of our type with our parameters.
 
- Public Member Functions inherited from BaseGrapeVineParameters
 BaseGrapeVineParameters ()
 Default constructor.
 
 BaseGrapeVineParameters (const pugi::xml_node canopy_node)
 
void readParametersFromXML (const pugi::xml_node canopy_node)
 Sets canopy parameters from the given XML node.
 
- Public Member Functions inherited from BaseCanopyParameters
 BaseCanopyParameters ()
 Default constructor.
 
 BaseCanopyParameters (const pugi::xml_node canopy_node)
 
void readParametersFromXML (const pugi::xml_node canopy_node)
 Sets canopy parameters from the given XML node.
 
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +

-Data Fields

float leaf_width
 Maximum width of leaves. Leaf width increases logarithmically from the shoot tip, so leaf_width is the width at the base of the shoot.
 
helios::int2 leaf_subdivisions
 Number of sub-division segments per leaf.
 
std::string leaf_texture_file
 Path to texture map file for leaves.
 
std::string wood_texture_file
 Path to texture map file for trunks/branches.
 
int wood_subdivisions
 Number of radial subdivisions for trunk/cordon/shoot tubes.
 
float plant_spacing
 Spacing between adjacent plants along the row direction.
 
float row_spacing
 Spacing between plant rows.
 
float trunk_height
 Distance between the ground and top of trunks.
 
float trunk_radius
 Radius of the trunk at the widest point.
 
float cordon_height
 Distance between the ground and cordon. Note - must be greater than or equal to the trunk height.
 
float cordon_radius
 Radius of cordon branches.
 
float shoot_length
 Length of shoots.
 
float shoot_radius
 Radius of shoot branches.
 
uint shoots_per_cordon
 Number of shoots on each cordon.
 
float leaf_spacing_fraction
 Spacing between adjacent leaves as a fraction of the local leaf width. E.g., leaf_spacing_fraction = 1 would give a leaf spacing equal to the leaf width.
 
helios::int2 plant_count
 Number of crowns/plants in the x- and y-directions.
 
helios::vec3 canopy_origin
 Cartesian (x,y,z) coordinate of the bottom center point of the canopy (i.e., specifying z=0 places the bottom surface of the canopy at z=0).
 
float canopy_rotation
 Azimuthal rotation of the canopy about the canopy origin. Note that if canopy_rotation is not equal to zero, the plant_spacing and plant_count parameters are defined in the x- and y-directions before rotation.
 
float grape_radius
 Radius of grape berries.
 
float cluster_radius
 Maximum horizontal radius of grape clusters.
 
float cluster_height_max
 Maximum height of grape clusters along the shoot as a fraction of the total shoot length.
 
helios::RGBcolor grape_color
 Color of grapes.
 
uint grape_subdivisions
 Number of azimuthal and zenithal subdivisions making up berries (will result in roughly grape_subdivisions^2 triangles per grape berry)
 
std::vector< float > leaf_angle_PDF
 

+Additional Inherited Members

- Data Fields inherited from BaseGrapeVineParameters
float leaf_width
 Maximum width of leaves. Leaf width increases logarithmically from the shoot tip, so leaf_width is the width at the base of the shoot.
 
float leaf_width_spread
 Spread value for the maximum leaf width. With any new canopy or plant generation, the maximum leaf width would be between leaf_width - leaf_width_spread and leaf_width + leaf_width_spread.
 
helios::int2 leaf_subdivisions
 Number of sub-division segments per leaf.
 
std::string leaf_texture_file
 Path to texture map file for leaves.
 
std::string wood_texture_file
 Path to texture map file for trunks/branches.
 
int wood_subdivisions
 Number of radial subdivisions for trunk/cordon/shoot tubes.
 
int wood_subdivisions_spread
 Spread value for the number of wood subdivisions. With any new canopy or plant generation, the maximum number of wood subdivisions would be between wood_subdivisions - wood_subdivisions_spread and wood_subdivisions + wood_subdivisions_spread.
 
float dead_probability
 Probability for a plant to be dead, i.e. without any leaves or grapes.
 
float missing_plant_probability
 Probability for a plant to be missing.
 
float plant_spacing
 Spacing between adjacent plants along the row direction.
 
float plant_spacing_spread
 Spread value for the plant spacing. The spacing between adjacent plants along a row would vary between plant_spacing - plant_spacing_spread and plant_spacing + plant_spacing_spread.
 
float row_spacing
 Spacing between plant rows.
 
float row_spacing_spread
 Spread value for the row spacing. This allows to vary the alignment of plants along a row. The spacing between two plants of adjacent rows would be between row_spacing - row_spacing_spread and row_spacing + row_spacing_spread.
 
float trunk_height
 Distance between the ground and top of trunks.
 
float trunk_height_spread
 Spread value for the trunk height. With any new canopy or plant generation, the trunk height would be between trunk_height - trunk_height_spread and trunk_height + trunk_height_spread.
 
float trunk_radius
 Radius of the trunk at the widest point.
 
float trunk_radius_spread
 Spread value for the trunk radius. With any new canopy or plant generation, the trunk radius would be between trunk_radius - trunk_radius_spread and trunk_radius + trunk_radius_spread.
 
float cordon_length
 Length of the cordons. By default, half the plant spacing.
 
float cordon_length_spread
 Spread value for the cordon length. With any new canopy or plant generation, the cordon length would be between cordon_length - cordon_length_spread and cordon_length + cordon_length_spread.
 
float cordon_height
 Distance between the ground and cordon. Note - must be greater than or equal to the trunk height.
 
float cordon_height_spread
 Spread value for the cordon height. With any new canopy or plant generation, the cordon height would be between cordon_height - cordon_height_spread and cordon_height + cordon_height_spread.
 
float cordon_radius
 Radius of cordon branches.
 
float cordon_radius_spread
 Spread value for the cordon radius. With any new canopy or plant generation, the cordon radius would be between cordon_radius - cordon_radius_spread and cordon_radius + cordon_radius_spread.
 
float shoot_length
 Length of shoots.
 
float shoot_length_spread
 Spread value for the shoot length. With any new canopy or plant generation, the shoot length would be between shoot_length - shoot_length_spread and shoot_length + shoot_length_spread.
 
float shoot_radius
 Radius of shoot branches.
 
float shoot_radius_spread
 Spread value for the shoot radius. With any new canopy or plant generation, the shoot radius would be between shoot_radius - shoot_radius_spread and shoot_radius + shoot_radius_spread.
 
uint shoots_per_cordon
 Number of shoots on each cordon.
 
uint shoots_per_cordon_spread
 Spread value for the number of shoots per cordon. With any new canopy or plant generation, the number of shoots per cordon would be between shoots_per_cordon - shoots_per_cordon_spread and shoots_per_cordon + shoots_per_cordon_spread.
 
float leaf_spacing_fraction
 Spacing between adjacent leaves as a fraction of the local leaf width. E.g., leaf_spacing_fraction = 1 would give a leaf spacing equal to the leaf width.
 
float leaf_spacing_fraction_spread
 Spread value for the leaf spacing fraction. With any new canopy or plant generation, the leaf spacing fraction would be between leaf_spacing_fraction - leaf_spacing_fraction_spread and leaf_spacing_fraction + leaf_spacing_fraction_spread.
 
helios::int2 plant_count
 Number of crowns/plants in the x- and y-directions.
 
float grape_radius
 Radius of grape berries.
 
float grape_radius_spread
 Spread value for the grape radius. With any new canopy or plant generation, the grape radius would be between grape_radius - grape_radius_spread and grape_radius + grape_radius_spread.
 
float cluster_radius
 Maximum horizontal radius of grape clusters.
 
float cluster_radius_spread
 Spread value for the cluster radius. With any new canopy or plant generation, the cluster radius would be between cluster_radius - cluster_radius_spread and cluster_radius + cluster_radius_spread.
 
float cluster_height_max
 Maximum height of grape clusters along the shoot as a fraction of the total shoot length.
 
float cluster_height_max_spread
 Spread value for the cluster height. With any new canopy or plant generation, the cluster height would be between cluster_height - cluster_height_spread and cluster_height + cluster_height_spread.
 
helios::RGBcolor grape_color
 Color of grapes.
 
uint grape_subdivisions
 Number of azimuthal and zenithal subdivisions making up berries (will result in roughly 2*(grape_subdivisions)^2 triangles per grape berry)
 
uint grape_subdivisions_spread
 Spread value for the number of grape subdivisions. With any new canopy or plant generation, the number of grape subdivisions would be between grape_subdivisions - grape_subdivisions_spread and grape_subdivisions + grape_subdivisions_spread.
 
std::vector< float > leaf_angle_PDF
 
float canopy_rotation_spread
 Spread value for the canopy rotation. With any new canopy or plant generation, the canopy/plant rotation would be between canopy_rotation - canopy_rotation_spread and canopy_rotation + canopy_rotation_spread.
 
- Data Fields inherited from BaseCanopyParameters
helios::vec3 canopy_origin
 Cartesian (x,y,z) coordinate of the bottom center point of the canopy (i.e., specifying z=0 places the bottom surface of the canopy at z=0).
 
float canopy_rotation
 Azimuthal rotation of the canopy about the canopy origin. Note that if canopy_rotation is not equal to zero, the plant_spacing and plant_count parameters are defined in the x- and y-directions before rotation.
 

Detailed Description

Parameters defining the grapevine canopy with unilateral trellis.

-

Definition at line 330 of file CanopyGenerator.h.

+

Definition at line 438 of file CanopyGenerator.h.

Constructor & Destructor Documentation

-

◆ UnilateralGrapevineParameters()

+

◆ UnilateralGrapevineParameters() [1/2]

@@ -211,438 +314,126 @@

Definition at line 203 of file CanopyGenerator.cpp.

+

Definition at line 743 of file CanopyGenerator.cpp.

-

Field Documentation

- -

◆ canopy_origin

+ +

◆ UnilateralGrapevineParameters() [2/2]

- - -
helios::vec3 UnilateralGrapevineParameters::canopy_origin
-
- -

Cartesian (x,y,z) coordinate of the bottom center point of the canopy (i.e., specifying z=0 places the bottom surface of the canopy at z=0).

- -

Definition at line 384 of file CanopyGenerator.h.

- -
-
- -

◆ canopy_rotation

- -
-
- - - - -
float UnilateralGrapevineParameters::canopy_rotation
-
- -

Azimuthal rotation of the canopy about the canopy origin. Note that if canopy_rotation is not equal to zero, the plant_spacing and plant_count parameters are defined in the x- and y-directions before rotation.

- -

Definition at line 387 of file CanopyGenerator.h.

- -
-
- -

◆ cluster_height_max

- -
-
- - - - -
float UnilateralGrapevineParameters::cluster_height_max
-
- -

Maximum height of grape clusters along the shoot as a fraction of the total shoot length.

- -

Definition at line 396 of file CanopyGenerator.h.

- -
-
- -

◆ cluster_radius

- -
-
- - - - -
float UnilateralGrapevineParameters::cluster_radius
-
- -

Maximum horizontal radius of grape clusters.

- -

Definition at line 393 of file CanopyGenerator.h.

- -
-
- -

◆ cordon_height

- -
-
- - - - -
float UnilateralGrapevineParameters::cordon_height
-
- -

Distance between the ground and cordon. Note - must be greater than or equal to the trunk height.

- -

Definition at line 363 of file CanopyGenerator.h.

- -
-
- -

◆ cordon_radius

- -
-
- - - - -
float UnilateralGrapevineParameters::cordon_radius
-
- -

Radius of cordon branches.

- -

Definition at line 366 of file CanopyGenerator.h.

- -
-
- -

◆ grape_color

- -
-
- - - - -
helios::RGBcolor UnilateralGrapevineParameters::grape_color
-
- -

Color of grapes.

- -

Definition at line 399 of file CanopyGenerator.h.

- -
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◆ grape_radius

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float UnilateralGrapevineParameters::grape_radius
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Radius of grape berries.

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Definition at line 390 of file CanopyGenerator.h.

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◆ grape_subdivisions

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uint UnilateralGrapevineParameters::grape_subdivisions
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Number of azimuthal and zenithal subdivisions making up berries (will result in roughly grape_subdivisions^2 triangles per grape berry)

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Definition at line 402 of file CanopyGenerator.h.

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◆ leaf_angle_PDF

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std::vector<float> UnilateralGrapevineParameters::leaf_angle_PDF
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Definition at line 405 of file CanopyGenerator.h.

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◆ leaf_spacing_fraction

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float UnilateralGrapevineParameters::leaf_spacing_fraction
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Spacing between adjacent leaves as a fraction of the local leaf width. E.g., leaf_spacing_fraction = 1 would give a leaf spacing equal to the leaf width.

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Definition at line 378 of file CanopyGenerator.h.

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◆ leaf_subdivisions

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helios::int2 UnilateralGrapevineParameters::leaf_subdivisions
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Number of sub-division segments per leaf.

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Definition at line 339 of file CanopyGenerator.h.

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◆ leaf_texture_file

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std::string UnilateralGrapevineParameters::leaf_texture_file
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Path to texture map file for leaves.

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Definition at line 342 of file CanopyGenerator.h.

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◆ leaf_width

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float UnilateralGrapevineParameters::leaf_width
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Maximum width of leaves. Leaf width increases logarithmically from the shoot tip, so leaf_width is the width at the base of the shoot.

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Definition at line 336 of file CanopyGenerator.h.

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◆ plant_count

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helios::int2 UnilateralGrapevineParameters::plant_count
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Number of crowns/plants in the x- and y-directions.

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Definition at line 381 of file CanopyGenerator.h.

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◆ plant_spacing

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float UnilateralGrapevineParameters::plant_spacing
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Spacing between adjacent plants along the row direction.

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Definition at line 351 of file CanopyGenerator.h.

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◆ row_spacing

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float UnilateralGrapevineParameters::row_spacingUnilateralGrapevineParameters::UnilateralGrapevineParameters (const pugi::xml_node canopy_node)
+
Parameters
+ + +
[in]canopy_nodeXML node containing the canopy parameters
+
+
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Spacing between plant rows.

- -

Definition at line 354 of file CanopyGenerator.h.

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Definition at line 777 of file CanopyGenerator.cpp.

- -

◆ shoot_length

+

Member Function Documentation

+ +

◆ buildCanopy()

+ + + + + +
- + + + +
float UnilateralGrapevineParameters::shoot_lengthvoid UnilateralGrapevineParameters::buildCanopy (CanopyGenerator & canopy_generator)
+ 		+overridevirtual
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Length of shoots.

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Definition at line 369 of file CanopyGenerator.h.

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◆ shoot_radius

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float UnilateralGrapevineParameters::shoot_radius
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Makes the given Canopy generator build a canopy of our type with our parameters.

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Radius of shoot branches.

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Reimplemented from BaseGrapeVineParameters.

-

Definition at line 372 of file CanopyGenerator.h.

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Definition at line 789 of file CanopyGenerator.cpp.

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◆ shoots_per_cordon

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◆ buildPlant()

+ + + + + +
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uint UnilateralGrapevineParameters::shoots_per_cordon
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Number of shoots on each cordon.

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Definition at line 375 of file CanopyGenerator.h.

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◆ trunk_height

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float UnilateralGrapevineParameters::trunk_heightvoid UnilateralGrapevineParameters::buildPlant (CanopyGenerator & canopy_generator,
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Distance between the ground and top of trunks.

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Definition at line 357 of file CanopyGenerator.h.

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◆ trunk_radius

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float UnilateralGrapevineParameters::trunk_radiushelios::vec3 origin )
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Radius of the trunk at the widest point.

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Definition at line 360 of file CanopyGenerator.h.

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◆ wood_subdivisions

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int UnilateralGrapevineParameters::wood_subdivisions
-
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Makes the given Canopy generator build a single plant of our canopy type with our parameters at the given position.

-

Number of radial subdivisions for trunk/cordon/shoot tubes.

+

Reimplemented from BaseGrapeVineParameters.

-

Definition at line 348 of file CanopyGenerator.h.

+

Definition at line 785 of file CanopyGenerator.cpp.

- -

◆ wood_texture_file

+ +

◆ readParametersFromXML()

- + + + +
std::string UnilateralGrapevineParameters::wood_texture_filevoid UnilateralGrapevineParameters::readParametersFromXML (const pugi::xml_node canopy_node)
-

Path to texture map file for trunks/branches.

+

Sets canopy parameters from the given XML node.

+
Parameters
+ + +
[in]canopy_nodeXML node containing the canopy parameters
+
+
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Definition at line 345 of file CanopyGenerator.h.

+

Definition at line 781 of file CanopyGenerator.cpp.

diff --git a/doc/html/struct_unilateral_grapevine_parameters.png b/doc/html/struct_unilateral_grapevine_parameters.png new file mode 100644 index 000000000..ae7ea8379 Binary files /dev/null and b/doc/html/struct_unilateral_grapevine_parameters.png differ diff --git a/doc/html/struct_v_s_p_grapevine_parameters.html b/doc/html/struct_v_s_p_grapevine_parameters.html index b36f6dda4..430d81c59 100644 --- a/doc/html/struct_v_s_p_grapevine_parameters.html +++ b/doc/html/struct_v_s_p_grapevine_parameters.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
@@ -98,8 +98,7 @@
-Public Member Functions | -Data Fields
+Public Member Functions
VSPGrapevineParameters Struct Reference
@@ -108,94 +107,198 @@ More...

#include <CanopyGenerator.h>

+
+Inheritance diagram for VSPGrapevineParameters:
+
+
+ + +BaseGrapeVineParameters +BaseCanopyParameters + +
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + +

Public Member Functions

 VSPGrapevineParameters ()
 Default constructor.
 
 VSPGrapevineParameters (const pugi::xml_node canopy_node)
 
void readParametersFromXML (const pugi::xml_node canopy_node)
 Sets canopy parameters from the given XML node.
 
void buildPlant (CanopyGenerator &canopy_generator, helios::vec3 origin) override
 Makes the given Canopy generator build a single plant of our canopy type with our parameters at the given position.
 
void buildCanopy (CanopyGenerator &canopy_generator) override
 Makes the given Canopy generator build a canopy of our type with our parameters.
 
- Public Member Functions inherited from BaseGrapeVineParameters
 BaseGrapeVineParameters ()
 Default constructor.
 
 BaseGrapeVineParameters (const pugi::xml_node canopy_node)
 
void readParametersFromXML (const pugi::xml_node canopy_node)
 Sets canopy parameters from the given XML node.
 
- Public Member Functions inherited from BaseCanopyParameters
 BaseCanopyParameters ()
 Default constructor.
 
 BaseCanopyParameters (const pugi::xml_node canopy_node)
 
void readParametersFromXML (const pugi::xml_node canopy_node)
 Sets canopy parameters from the given XML node.
 
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-Data Fields

float leaf_width
 Maximum width of leaves. Leaf width increases logarithmically from the shoot tip, so leaf_width is the width at the base of the shoot.
 
helios::int2 leaf_subdivisions
 Number of sub-division segments per leaf.
 
std::string leaf_texture_file
 Path to texture map file for leaves.
 
std::string wood_texture_file
 Path to texture map file for trunks/branches.
 
int wood_subdivisions
 Number of radial subdivisions for trunk/cordon/shoot tubes.
 
float plant_spacing
 Spacing between adjacent plants along the row direction.
 
float row_spacing
 Spacing between plant rows.
 
float trunk_height
 Distance between the ground and top of trunks.
 
float trunk_radius
 Radius of the trunk at the widest point.
 
float cordon_height
 Distance between the ground and cordon. Note - must be greater than or equal to the trunk height.
 
float cordon_radius
 Radius of cordon branches.
 
float shoot_length
 Length of shoots.
 
float shoot_radius
 Radius of shoot branches.
 
uint shoots_per_cordon
 Number of shoots on each cordon.
 
float leaf_spacing_fraction
 Spacing between adjacent leaves as a fraction of the local leaf width. E.g., leaf_spacing_fraction = 1 would give a leaf spacing equal to the leaf width.
 
helios::int2 plant_count
 Number of crowns/plants in the x- and y-directions.
 
helios::vec3 canopy_origin
 Cartesian (x,y,z) coordinate of the bottom center point of the canopy (i.e., specifying z=0 places the bottom surface of the canopy at z=0).
 
float canopy_rotation
 Azimuthal rotation of the canopy about the canopy origin. Note that if canopy_rotation is not equal to zero, the plant_spacing and plant_count parameters are defined in the x- and y-directions before rotation.
 
float grape_radius
 Radius of grape berries.
 
float cluster_radius
 Maximum horizontal radius of grape clusters.
 
float cluster_height_max
 Maximum height of grape clusters along the shoot as a fraction of the total shoot length.
 
helios::RGBcolor grape_color
 Color of grapes.
 
uint grape_subdivisions
 Number of azimuthal and zenithal subdivisions making up berries (will result in roughly 2*(grape_subdivisions)^2 triangles per grape berry)
 
std::vector< float > leaf_angle_PDF
 

+Additional Inherited Members

- Data Fields inherited from BaseGrapeVineParameters
float leaf_width
 Maximum width of leaves. Leaf width increases logarithmically from the shoot tip, so leaf_width is the width at the base of the shoot.
 
float leaf_width_spread
 Spread value for the maximum leaf width. With any new canopy or plant generation, the maximum leaf width would be between leaf_width - leaf_width_spread and leaf_width + leaf_width_spread.
 
helios::int2 leaf_subdivisions
 Number of sub-division segments per leaf.
 
std::string leaf_texture_file
 Path to texture map file for leaves.
 
std::string wood_texture_file
 Path to texture map file for trunks/branches.
 
int wood_subdivisions
 Number of radial subdivisions for trunk/cordon/shoot tubes.
 
int wood_subdivisions_spread
 Spread value for the number of wood subdivisions. With any new canopy or plant generation, the maximum number of wood subdivisions would be between wood_subdivisions - wood_subdivisions_spread and wood_subdivisions + wood_subdivisions_spread.
 
float dead_probability
 Probability for a plant to be dead, i.e. without any leaves or grapes.
 
float missing_plant_probability
 Probability for a plant to be missing.
 
float plant_spacing
 Spacing between adjacent plants along the row direction.
 
float plant_spacing_spread
 Spread value for the plant spacing. The spacing between adjacent plants along a row would vary between plant_spacing - plant_spacing_spread and plant_spacing + plant_spacing_spread.
 
float row_spacing
 Spacing between plant rows.
 
float row_spacing_spread
 Spread value for the row spacing. This allows to vary the alignment of plants along a row. The spacing between two plants of adjacent rows would be between row_spacing - row_spacing_spread and row_spacing + row_spacing_spread.
 
float trunk_height
 Distance between the ground and top of trunks.
 
float trunk_height_spread
 Spread value for the trunk height. With any new canopy or plant generation, the trunk height would be between trunk_height - trunk_height_spread and trunk_height + trunk_height_spread.
 
float trunk_radius
 Radius of the trunk at the widest point.
 
float trunk_radius_spread
 Spread value for the trunk radius. With any new canopy or plant generation, the trunk radius would be between trunk_radius - trunk_radius_spread and trunk_radius + trunk_radius_spread.
 
float cordon_length
 Length of the cordons. By default, half the plant spacing.
 
float cordon_length_spread
 Spread value for the cordon length. With any new canopy or plant generation, the cordon length would be between cordon_length - cordon_length_spread and cordon_length + cordon_length_spread.
 
float cordon_height
 Distance between the ground and cordon. Note - must be greater than or equal to the trunk height.
 
float cordon_height_spread
 Spread value for the cordon height. With any new canopy or plant generation, the cordon height would be between cordon_height - cordon_height_spread and cordon_height + cordon_height_spread.
 
float cordon_radius
 Radius of cordon branches.
 
float cordon_radius_spread
 Spread value for the cordon radius. With any new canopy or plant generation, the cordon radius would be between cordon_radius - cordon_radius_spread and cordon_radius + cordon_radius_spread.
 
float shoot_length
 Length of shoots.
 
float shoot_length_spread
 Spread value for the shoot length. With any new canopy or plant generation, the shoot length would be between shoot_length - shoot_length_spread and shoot_length + shoot_length_spread.
 
float shoot_radius
 Radius of shoot branches.
 
float shoot_radius_spread
 Spread value for the shoot radius. With any new canopy or plant generation, the shoot radius would be between shoot_radius - shoot_radius_spread and shoot_radius + shoot_radius_spread.
 
uint shoots_per_cordon
 Number of shoots on each cordon.
 
uint shoots_per_cordon_spread
 Spread value for the number of shoots per cordon. With any new canopy or plant generation, the number of shoots per cordon would be between shoots_per_cordon - shoots_per_cordon_spread and shoots_per_cordon + shoots_per_cordon_spread.
 
float leaf_spacing_fraction
 Spacing between adjacent leaves as a fraction of the local leaf width. E.g., leaf_spacing_fraction = 1 would give a leaf spacing equal to the leaf width.
 
float leaf_spacing_fraction_spread
 Spread value for the leaf spacing fraction. With any new canopy or plant generation, the leaf spacing fraction would be between leaf_spacing_fraction - leaf_spacing_fraction_spread and leaf_spacing_fraction + leaf_spacing_fraction_spread.
 
helios::int2 plant_count
 Number of crowns/plants in the x- and y-directions.
 
float grape_radius
 Radius of grape berries.
 
float grape_radius_spread
 Spread value for the grape radius. With any new canopy or plant generation, the grape radius would be between grape_radius - grape_radius_spread and grape_radius + grape_radius_spread.
 
float cluster_radius
 Maximum horizontal radius of grape clusters.
 
float cluster_radius_spread
 Spread value for the cluster radius. With any new canopy or plant generation, the cluster radius would be between cluster_radius - cluster_radius_spread and cluster_radius + cluster_radius_spread.
 
float cluster_height_max
 Maximum height of grape clusters along the shoot as a fraction of the total shoot length.
 
float cluster_height_max_spread
 Spread value for the cluster height. With any new canopy or plant generation, the cluster height would be between cluster_height - cluster_height_spread and cluster_height + cluster_height_spread.
 
helios::RGBcolor grape_color
 Color of grapes.
 
uint grape_subdivisions
 Number of azimuthal and zenithal subdivisions making up berries (will result in roughly 2*(grape_subdivisions)^2 triangles per grape berry)
 
uint grape_subdivisions_spread
 Spread value for the number of grape subdivisions. With any new canopy or plant generation, the number of grape subdivisions would be between grape_subdivisions - grape_subdivisions_spread and grape_subdivisions + grape_subdivisions_spread.
 
std::vector< float > leaf_angle_PDF
 
float canopy_rotation_spread
 Spread value for the canopy rotation. With any new canopy or plant generation, the canopy/plant rotation would be between canopy_rotation - canopy_rotation_spread and canopy_rotation + canopy_rotation_spread.
 
- Data Fields inherited from BaseCanopyParameters
helios::vec3 canopy_origin
 Cartesian (x,y,z) coordinate of the bottom center point of the canopy (i.e., specifying z=0 places the bottom surface of the canopy at z=0).
 
float canopy_rotation
 Azimuthal rotation of the canopy about the canopy origin. Note that if canopy_rotation is not equal to zero, the plant_spacing and plant_count parameters are defined in the x- and y-directions before rotation.
 

Detailed Description

Parameters defining the grapevine canopy with vertical shoot positioned (VSP) trellis.

-

Definition at line 161 of file CanopyGenerator.h.

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Definition at line 373 of file CanopyGenerator.h.

Constructor & Destructor Documentation

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◆ VSPGrapevineParameters()

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◆ VSPGrapevineParameters() [1/2]

@@ -211,438 +314,126 @@

Definition at line 97 of file CanopyGenerator.cpp.

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Definition at line 619 of file CanopyGenerator.cpp.

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Field Documentation

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◆ canopy_origin

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◆ VSPGrapevineParameters() [2/2]

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helios::vec3 VSPGrapevineParameters::canopy_origin
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Cartesian (x,y,z) coordinate of the bottom center point of the canopy (i.e., specifying z=0 places the bottom surface of the canopy at z=0).

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Definition at line 215 of file CanopyGenerator.h.

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◆ canopy_rotation

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float VSPGrapevineParameters::canopy_rotation
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Azimuthal rotation of the canopy about the canopy origin. Note that if canopy_rotation is not equal to zero, the plant_spacing and plant_count parameters are defined in the x- and y-directions before rotation.

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Definition at line 218 of file CanopyGenerator.h.

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◆ cluster_height_max

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float VSPGrapevineParameters::cluster_height_max
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Maximum height of grape clusters along the shoot as a fraction of the total shoot length.

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Definition at line 227 of file CanopyGenerator.h.

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◆ cluster_radius

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float VSPGrapevineParameters::cluster_radius
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Maximum horizontal radius of grape clusters.

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Definition at line 224 of file CanopyGenerator.h.

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◆ cordon_height

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float VSPGrapevineParameters::cordon_height
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Distance between the ground and cordon. Note - must be greater than or equal to the trunk height.

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Definition at line 194 of file CanopyGenerator.h.

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◆ cordon_radius

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float VSPGrapevineParameters::cordon_radius
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Radius of cordon branches.

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Definition at line 197 of file CanopyGenerator.h.

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◆ grape_color

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helios::RGBcolor VSPGrapevineParameters::grape_color
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Color of grapes.

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Definition at line 230 of file CanopyGenerator.h.

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◆ grape_radius

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float VSPGrapevineParameters::grape_radius
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Radius of grape berries.

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Definition at line 221 of file CanopyGenerator.h.

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◆ grape_subdivisions

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uint VSPGrapevineParameters::grape_subdivisions
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Number of azimuthal and zenithal subdivisions making up berries (will result in roughly 2*(grape_subdivisions)^2 triangles per grape berry)

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Definition at line 233 of file CanopyGenerator.h.

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◆ leaf_angle_PDF

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std::vector<float> VSPGrapevineParameters::leaf_angle_PDF
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Definition at line 236 of file CanopyGenerator.h.

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◆ leaf_spacing_fraction

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float VSPGrapevineParameters::leaf_spacing_fraction
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Spacing between adjacent leaves as a fraction of the local leaf width. E.g., leaf_spacing_fraction = 1 would give a leaf spacing equal to the leaf width.

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Definition at line 209 of file CanopyGenerator.h.

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◆ leaf_subdivisions

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helios::int2 VSPGrapevineParameters::leaf_subdivisions
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Number of sub-division segments per leaf.

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Definition at line 170 of file CanopyGenerator.h.

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◆ leaf_texture_file

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std::string VSPGrapevineParameters::leaf_texture_file
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Path to texture map file for leaves.

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Definition at line 173 of file CanopyGenerator.h.

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◆ leaf_width

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float VSPGrapevineParameters::leaf_width
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Maximum width of leaves. Leaf width increases logarithmically from the shoot tip, so leaf_width is the width at the base of the shoot.

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Definition at line 167 of file CanopyGenerator.h.

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◆ plant_count

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helios::int2 VSPGrapevineParameters::plant_count
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Number of crowns/plants in the x- and y-directions.

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Definition at line 212 of file CanopyGenerator.h.

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◆ plant_spacing

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float VSPGrapevineParameters::plant_spacing
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Spacing between adjacent plants along the row direction.

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Definition at line 182 of file CanopyGenerator.h.

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◆ row_spacing

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float VSPGrapevineParameters::row_spacingVSPGrapevineParameters::VSPGrapevineParameters (const pugi::xml_node canopy_node)
+
Parameters
+ + +
[in]canopy_nodeXML node containing the canopy parameters
+
+
-

Spacing between plant rows.

- -

Definition at line 185 of file CanopyGenerator.h.

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Definition at line 653 of file CanopyGenerator.cpp.

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◆ shoot_length

+

Member Function Documentation

+ +

◆ buildCanopy()

+ + + + + +
- + + + +
float VSPGrapevineParameters::shoot_lengthvoid VSPGrapevineParameters::buildCanopy (CanopyGenerator & canopy_generator)
+ 		+overridevirtual
-

Length of shoots.

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Definition at line 200 of file CanopyGenerator.h.

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◆ shoot_radius

- -
-
- - - - -
float VSPGrapevineParameters::shoot_radius
-
+

Makes the given Canopy generator build a canopy of our type with our parameters.

-

Radius of shoot branches.

+

Reimplemented from BaseGrapeVineParameters.

-

Definition at line 203 of file CanopyGenerator.h.

+

Definition at line 665 of file CanopyGenerator.cpp.

- -

◆ shoots_per_cordon

+ +

◆ buildPlant()

+ + + + + +
- - -
uint VSPGrapevineParameters::shoots_per_cordon
-
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Number of shoots on each cordon.

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Definition at line 206 of file CanopyGenerator.h.

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◆ trunk_height

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float VSPGrapevineParameters::trunk_heightvoid VSPGrapevineParameters::buildPlant (CanopyGenerator & canopy_generator,
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Distance between the ground and top of trunks.

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Definition at line 188 of file CanopyGenerator.h.

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◆ trunk_radius

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float VSPGrapevineParameters::trunk_radiushelios::vec3 origin )
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Radius of the trunk at the widest point.

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Definition at line 191 of file CanopyGenerator.h.

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◆ wood_subdivisions

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int VSPGrapevineParameters::wood_subdivisions
-
+

Makes the given Canopy generator build a single plant of our canopy type with our parameters at the given position.

-

Number of radial subdivisions for trunk/cordon/shoot tubes.

+

Reimplemented from BaseGrapeVineParameters.

-

Definition at line 179 of file CanopyGenerator.h.

+

Definition at line 661 of file CanopyGenerator.cpp.

- -

◆ wood_texture_file

+ +

◆ readParametersFromXML()

- + + + +
std::string VSPGrapevineParameters::wood_texture_filevoid VSPGrapevineParameters::readParametersFromXML (const pugi::xml_node canopy_node)
-

Path to texture map file for trunks/branches.

+

Sets canopy parameters from the given XML node.

+
Parameters
+ + +
[in]canopy_nodeXML node containing the canopy parameters
+
+
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Definition at line 176 of file CanopyGenerator.h.

+

Definition at line 657 of file CanopyGenerator.cpp.

diff --git a/doc/html/struct_v_s_p_grapevine_parameters.png b/doc/html/struct_v_s_p_grapevine_parameters.png new file mode 100644 index 000000000..f7b0f0c85 Binary files /dev/null and b/doc/html/struct_v_s_p_grapevine_parameters.png differ diff --git a/doc/html/struct_vegetative_bud.html b/doc/html/struct_vegetative_bud.html index 3f8f6ad7a..1dc2d43e9 100644 --- a/doc/html/struct_vegetative_bud.html +++ b/doc/html/struct_vegetative_bud.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
@@ -114,7 +114,7 @@

Detailed Description

-

Definition at line 266 of file PlantArchitecture.h.

+

Definition at line 281 of file PlantArchitecture.h.

Field Documentation

◆ shoot_ID

@@ -128,7 +128,7 @@

-

Definition at line 273 of file PlantArchitecture.h.

+

Definition at line 288 of file PlantArchitecture.h.

@@ -144,7 +144,7 @@

-

Definition at line 271 of file PlantArchitecture.h.

+

Definition at line 286 of file PlantArchitecture.h.

@@ -160,7 +160,7 @@

-

Definition at line 269 of file PlantArchitecture.h.

+

Definition at line 284 of file PlantArchitecture.h.

diff --git a/doc/html/struct_walnut_canopy_parameters.html b/doc/html/struct_walnut_canopy_parameters.html index 8646b3990..43f164754 100644 --- a/doc/html/struct_walnut_canopy_parameters.html +++ b/doc/html/struct_walnut_canopy_parameters.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
@@ -108,12 +108,41 @@ More...

#include <CanopyGenerator.h>

+
+Inheritance diagram for WalnutCanopyParameters:
+
+
+ + +BaseCanopyParameters + +
+ + + + + + + + + + + + + + + + + + + +

Public Member Functions

 WalnutCanopyParameters ()
 Default constructor.
 
 WalnutCanopyParameters (const pugi::xml_node canopy_node)
 
void readParametersFromXML (const pugi::xml_node canopy_node)
 Sets canopy parameters from the given XML node.
 
void buildPlant (CanopyGenerator &canopy_generator, helios::vec3 origin) override
 Makes the given Canopy generator build a single plant of our canopy type with our parameters at the given position.
 
void buildCanopy (CanopyGenerator &canopy_generator) override
 Makes the given Canopy generator build a canopy of our type with our parameters.
 
- Public Member Functions inherited from BaseCanopyParameters
 BaseCanopyParameters ()
 Default constructor.
 
 BaseCanopyParameters (const pugi::xml_node canopy_node)
 
void readParametersFromXML (const pugi::xml_node canopy_node)
 Sets canopy parameters from the given XML node.
 
@@ -159,20 +188,21 @@ - - - - - - + + + + + + +

Data Fields

helios::int2 plant_count
 Number of crowns/plants in the x- and y-directions.
 
helios::vec3 canopy_origin
 Cartesian (x,y,z) coordinate of the bottom center point of the canopy (i.e., specifying z=0 places the bottom surface of the canopy at z=0).
 
float canopy_rotation
 Azimuthal rotation of the canopy about the canopy origin. Note that if canopy_rotation is not equal to zero, the plant_spacing and plant_count parameters are defined in the x- and y-directions before rotation.
 
- Data Fields inherited from BaseCanopyParameters
helios::vec3 canopy_origin
 Cartesian (x,y,z) coordinate of the bottom center point of the canopy (i.e., specifying z=0 places the bottom surface of the canopy at z=0).
 
float canopy_rotation
 Azimuthal rotation of the canopy about the canopy origin. Note that if canopy_rotation is not equal to zero, the plant_spacing and plant_count parameters are defined in the x- and y-directions before rotation.
 

Detailed Description

Parameters defining the walnut tree canopy.

-

Definition at line 665 of file CanopyGenerator.h.

+

Definition at line 696 of file CanopyGenerator.h.

Constructor & Destructor Documentation

-

◆ WalnutCanopyParameters()

+

◆ WalnutCanopyParameters() [1/2]

@@ -188,62 +218,145 @@

Definition at line 415 of file CanopyGenerator.cpp.

+

Definition at line 1200 of file CanopyGenerator.cpp.

-

Field Documentation

- -

◆ branch_length

+ +

◆ WalnutCanopyParameters() [2/2]

- + + + +
helios::vec3 WalnutCanopyParameters::branch_lengthWalnutCanopyParameters::WalnutCanopyParameters (const pugi::xml_node canopy_node)
+
Parameters
+ + +
[in]canopy_nodeXML node containing the canopy parameters
+
+
-

Average length of branches in each recursive branch level. For example, the first (.x) value is the length of branches emanating from the trunk, the second (.y) is the the length of branches emanating from the first branching level.

+

Definition at line 1232 of file CanopyGenerator.cpp.

+ +
+
+

Member Function Documentation

+ +

◆ buildCanopy()

+ +
+
+ + + + + +
+ + + + + + + +
void WalnutCanopyParameters::buildCanopy (CanopyGenerator & canopy_generator)
+ 		+overridevirtual
+
+ +

Makes the given Canopy generator build a canopy of our type with our parameters.

+ +

Implements BaseCanopyParameters.

+ +

Definition at line 1305 of file CanopyGenerator.cpp.

-

Definition at line 692 of file CanopyGenerator.h.

+
+
+ +

◆ buildPlant()

+ +
+
+ + + + + +
+ + + + + + + + + + + +
void WalnutCanopyParameters::buildPlant (CanopyGenerator & canopy_generator,
helios::vec3 origin )
+ 		+overridevirtual
+
+ +

Makes the given Canopy generator build a single plant of our canopy type with our parameters at the given position.

+ +

Implements BaseCanopyParameters.

+ +

Definition at line 1301 of file CanopyGenerator.cpp.

- -

◆ canopy_origin

+ +

◆ readParametersFromXML()

- + + + +
helios::vec3 WalnutCanopyParameters::canopy_originvoid WalnutCanopyParameters::readParametersFromXML (const pugi::xml_node canopy_node)
-

Cartesian (x,y,z) coordinate of the bottom center point of the canopy (i.e., specifying z=0 places the bottom surface of the canopy at z=0).

+

Sets canopy parameters from the given XML node.

+
Parameters
+ + +
[in]canopy_nodeXML node containing the canopy parameters
+
+
-

Definition at line 714 of file CanopyGenerator.h.

+

Definition at line 1236 of file CanopyGenerator.cpp.

- -

◆ canopy_rotation

+

Field Documentation

+ +

◆ branch_length

- +
float WalnutCanopyParameters::canopy_rotationhelios::vec3 WalnutCanopyParameters::branch_length
-

Azimuthal rotation of the canopy about the canopy origin. Note that if canopy_rotation is not equal to zero, the plant_spacing and plant_count parameters are defined in the x- and y-directions before rotation.

+

Average length of branches in each recursive branch level. For example, the first (.x) value is the length of branches emanating from the trunk, the second (.y) is the the length of branches emanating from the first branching level.

-

Definition at line 717 of file CanopyGenerator.h.

+

Definition at line 740 of file CanopyGenerator.h.

@@ -261,7 +374,7 @@

Definition at line 702 of file CanopyGenerator.h.

+

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+

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+

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Definition at line 671 of file CanopyGenerator.h.

+

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+

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@@ -351,7 +464,7 @@

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+

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+

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@@ -387,7 +500,7 @@

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+

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@@ -405,7 +518,7 @@

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+

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+

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@@ -441,7 +554,7 @@

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+

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@@ -459,7 +572,7 @@

Definition at line 683 of file CanopyGenerator.h.

+

Definition at line 731 of file CanopyGenerator.h.

@@ -477,7 +590,7 @@

Definition at line 680 of file CanopyGenerator.h.

+

Definition at line 728 of file CanopyGenerator.h.

diff --git a/doc/html/struct_walnut_canopy_parameters.png b/doc/html/struct_walnut_canopy_parameters.png new file mode 100644 index 000000000..edcd088f8 Binary files /dev/null and b/doc/html/struct_walnut_canopy_parameters.png differ diff --git a/doc/html/struct_weber_penn_tree_parameters.html b/doc/html/struct_weber_penn_tree_parameters.html index b107be929..7defcbbc8 100644 --- a/doc/html/struct_weber_penn_tree_parameters.html +++ b/doc/html/struct_weber_penn_tree_parameters.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
@@ -111,10 +111,16 @@   float BaseSize   +float BaseSizeV +  uint BaseSplits   +uint BaseSplitsV +  float BaseSplitSize   +float BaseSplitSizeV +  float Scale   float ScaleV @@ -200,6 +206,22 @@

Definition at line 28 of file WeberPennTree.h.

+

+ + +

◆ BaseSizeV

+ +
+
+ + + + +
float WeberPennTreeParameters::BaseSizeV
+
+ +

Definition at line 28 of file WeberPennTree.h.

+
@@ -232,6 +254,38 @@

Definition at line 34 of file WeberPennTree.h.

+ + + +

◆ BaseSplitSizeV

+ +
+
+ + + + +
float WeberPennTreeParameters::BaseSplitSizeV
+
+ +

Definition at line 34 of file WeberPennTree.h.

+ +
+
+ +

◆ BaseSplitsV

+ +
+
+ + + + +
uint WeberPennTreeParameters::BaseSplitsV
+
+ +

Definition at line 31 of file WeberPennTree.h.

+
diff --git a/doc/html/struct_white_spruce_canopy_parameters.html b/doc/html/struct_white_spruce_canopy_parameters.html index 988839f1e..8de533278 100644 --- a/doc/html/struct_white_spruce_canopy_parameters.html +++ b/doc/html/struct_white_spruce_canopy_parameters.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
@@ -108,12 +108,41 @@ More...

#include <CanopyGenerator.h>

+
+Inheritance diagram for WhiteSpruceCanopyParameters:
+
+
+ + +BaseCanopyParameters + +
+ + + + + + + + + + + + + + + + + + + +

Public Member Functions

 WhiteSpruceCanopyParameters ()
 Default constructor.
 
 WhiteSpruceCanopyParameters (const pugi::xml_node canopy_node)
 
void readParametersFromXML (const pugi::xml_node canopy_node)
 Sets canopy parameters from the given XML node.
 
void buildPlant (CanopyGenerator &canopy_generator, helios::vec3 origin) override
 Makes the given Canopy generator build a single plant of our canopy type with our parameters at the given position.
 
void buildCanopy (CanopyGenerator &canopy_generator) override
 Makes the given Canopy generator build a canopy of our type with our parameters.
 
- Public Member Functions inherited from BaseCanopyParameters
 BaseCanopyParameters ()
 Default constructor.
 
 BaseCanopyParameters (const pugi::xml_node canopy_node)
 
void readParametersFromXML (const pugi::xml_node canopy_node)
 Sets canopy parameters from the given XML node.
 
@@ -168,20 +197,21 @@ - - - - - - + + + + + + +

Data Fields

helios::int2 plant_count
 Number of crowns/plants in the x- and y-directions.
 
helios::vec3 canopy_origin
 Cartesian (x,y,z) coordinate of the bottom center point of the canopy (i.e., specifying z=0 places the bottom surface of the canopy at z=0).
 
float canopy_rotation
 Azimuthal rotation of the canopy about the canopy origin. Note that if canopy_rotation is not equal to zero, the plant_spacing and plant_count parameters are defined in the x- and y-directions before rotation.
 
- Data Fields inherited from BaseCanopyParameters
helios::vec3 canopy_origin
 Cartesian (x,y,z) coordinate of the bottom center point of the canopy (i.e., specifying z=0 places the bottom surface of the canopy at z=0).
 
float canopy_rotation
 Azimuthal rotation of the canopy about the canopy origin. Note that if canopy_rotation is not equal to zero, the plant_spacing and plant_count parameters are defined in the x- and y-directions before rotation.
 

Detailed Description

Parameters defining the white spruce.

-

Definition at line 491 of file CanopyGenerator.h.

+

Definition at line 489 of file CanopyGenerator.h.

Constructor & Destructor Documentation

-

◆ WhiteSpruceCanopyParameters()

+

◆ WhiteSpruceCanopyParameters() [1/2]

@@ -197,98 +227,181 @@

Definition at line 303 of file CanopyGenerator.cpp.

+

Definition at line 841 of file CanopyGenerator.cpp.

-

Field Documentation

- -

◆ base_height

+ +

◆ WhiteSpruceCanopyParameters() [2/2]

- + + + +
float WhiteSpruceCanopyParameters::base_heightWhiteSpruceCanopyParameters::WhiteSpruceCanopyParameters (const pugi::xml_node canopy_node)
+
Parameters
+ + +
[in]canopy_nodeXML node containing the canopy parameters
+
+
-

Height at which branches start.

+

Definition at line 879 of file CanopyGenerator.cpp.

-

Definition at line 521 of file CanopyGenerator.h.

+
+
+

Member Function Documentation

+ +

◆ buildCanopy()

+ +
+
+ + + + + +
+ + + + + + + +
void WhiteSpruceCanopyParameters::buildCanopy (CanopyGenerator & canopy_generator)
+ 		+overridevirtual
+
+ +

Makes the given Canopy generator build a canopy of our type with our parameters.

+ +

Implements BaseCanopyParameters.

+ +

Definition at line 971 of file CanopyGenerator.cpp.

- -

◆ branches_per_level

+ +

◆ buildPlant()

+ + + + + +
- + + + + + + + +
int WhiteSpruceCanopyParameters::branches_per_levelvoid WhiteSpruceCanopyParameters::buildPlant (CanopyGenerator & canopy_generator,
helios::vec3 origin )
+ 		+overridevirtual
-

Number of primary branches on the bottom level.

+

Makes the given Canopy generator build a single plant of our canopy type with our parameters at the given position.

-

Definition at line 533 of file CanopyGenerator.h.

+

Implements BaseCanopyParameters.

+ +

Definition at line 967 of file CanopyGenerator.cpp.

- -

◆ canopy_configuration

+ +

◆ readParametersFromXML()

- + + + +
std::string WhiteSpruceCanopyParameters::canopy_configurationvoid WhiteSpruceCanopyParameters::readParametersFromXML (const pugi::xml_node canopy_node)
-

Specifies whether to use a uniformly spaced canopy (canopy_configuration="uniform") or a randomly arranged canopy with non-overlapping crowns (canopy_configuration="random").

+

Sets canopy parameters from the given XML node.

+
Parameters
+ + +
[in]canopy_nodeXML node containing the canopy parameters
+
+
-

Definition at line 539 of file CanopyGenerator.h.

+

Definition at line 883 of file CanopyGenerator.cpp.

+ +
+
+

Field Documentation

+ +

◆ base_height

+ +
+
+ + + + +
float WhiteSpruceCanopyParameters::base_height
+
+ +

Height at which branches start.

+ +

Definition at line 536 of file CanopyGenerator.h.

- -

◆ canopy_origin

+ +

◆ branches_per_level

- +
helios::vec3 WhiteSpruceCanopyParameters::canopy_originint WhiteSpruceCanopyParameters::branches_per_level
-

Cartesian (x,y,z) coordinate of the bottom center point of the canopy (i.e., specifying z=0 places the bottom surface of the canopy at z=0).

+

Number of primary branches on the bottom level.

Definition at line 548 of file CanopyGenerator.h.

- -

◆ canopy_rotation

+ +

◆ canopy_configuration

- +
float WhiteSpruceCanopyParameters::canopy_rotationstd::string WhiteSpruceCanopyParameters::canopy_configuration
-

Azimuthal rotation of the canopy about the canopy origin. Note that if canopy_rotation is not equal to zero, the plant_spacing and plant_count parameters are defined in the x- and y-directions before rotation.

+

Specifies whether to use a uniformly spaced canopy (canopy_configuration="uniform") or a randomly arranged canopy with non-overlapping crowns (canopy_configuration="random").

-

Definition at line 551 of file CanopyGenerator.h.

+

Definition at line 554 of file CanopyGenerator.h.

@@ -306,7 +419,7 @@

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+

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+

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+

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+

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+

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+

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+

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+

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+

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+

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+

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+

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+

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@@ -540,7 +653,7 @@

Definition at line 509 of file CanopyGenerator.h.

+

Definition at line 524 of file CanopyGenerator.h.

diff --git a/doc/html/struct_white_spruce_canopy_parameters.png b/doc/html/struct_white_spruce_canopy_parameters.png new file mode 100644 index 000000000..dc2ee3ddf Binary files /dev/null and b/doc/html/struct_white_spruce_canopy_parameters.png differ diff --git a/doc/html/structhelios_1_1_date.html b/doc/html/structhelios_1_1_date.html index 7eed7ce8f..733d079d7 100644 --- a/doc/html/structhelios_1_1_date.html +++ b/doc/html/structhelios_1_1_date.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
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@@ -160,7 +160,7 @@

Date vector.

See also
make_Date()
-

Definition at line 1165 of file helios_vector_types.h.

+

Definition at line 1168 of file helios_vector_types.h.

Constructor & Destructor Documentation

◆ Date() [1/2]

@@ -187,7 +187,7 @@

Definition at line 1176 of file helios_vector_types.h.

+

Definition at line 1179 of file helios_vector_types.h.

@@ -233,7 +233,7 @@

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+

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@@ -344,7 +344,7 @@

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+

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@@ -373,7 +373,7 @@

Definition at line 1251 of file helios_vector_types.h.

+

Definition at line 1254 of file helios_vector_types.h.

@@ -407,7 +407,7 @@

Date to output stream.

-

Definition at line 1225 of file helios_vector_types.h.

+

Definition at line 1228 of file helios_vector_types.h.

@@ -426,7 +426,7 @@

Definition at line 1169 of file helios_vector_types.h.

+

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@@ -444,7 +444,7 @@

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+

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@@ -462,7 +462,7 @@

Definition at line 1173 of file helios_vector_types.h.

+

Definition at line 1176 of file helios_vector_types.h.

diff --git a/doc/html/structhelios_1_1_global_data.html b/doc/html/structhelios_1_1_global_data.html index 930b8bc0d..b6f8c9580 100644 --- a/doc/html/structhelios_1_1_global_data.html +++ b/doc/html/structhelios_1_1_global_data.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
diff --git a/doc/html/structhelios_1_1_r_g_b_acolor.html b/doc/html/structhelios_1_1_r_g_b_acolor.html index f55a8fd02..e1282ebc2 100644 --- a/doc/html/structhelios_1_1_r_g_b_acolor.html +++ b/doc/html/structhelios_1_1_r_g_b_acolor.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
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@@ -163,7 +163,7 @@

Detailed Description

R-G-B-A color vector.

-

Definition at line 1021 of file helios_vector_types.h.

+

Definition at line 1024 of file helios_vector_types.h.

Constructor & Destructor Documentation

◆ RGBAcolor() [1/4]

@@ -190,7 +190,7 @@

Definition at line 1038 of file helios_vector_types.h.

+

Definition at line 1041 of file helios_vector_types.h.

@@ -243,7 +243,7 @@

Note
If arguments are outside of the range 0 to 1, values are clamped.
-

Definition at line 1048 of file helios_vector_types.h.

+

Definition at line 1051 of file helios_vector_types.h.

@@ -279,7 +279,7 @@

Definition at line 1059 of file helios_vector_types.h.

+

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@@ -315,7 +315,7 @@

Note
If arguments are outside of the range 0 to 1, values are clamped.
-

Definition at line 1070 of file helios_vector_types.h.

+

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@@ -345,7 +345,7 @@

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+

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@@ -374,7 +374,7 @@

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+

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@@ -409,7 +409,7 @@

Definition at line 1084 of file helios_vector_types.h.

+

Definition at line 1087 of file helios_vector_types.h.

@@ -443,7 +443,7 @@

RGBAcolor to output stream

-

Definition at line 1095 of file helios_vector_types.h.

+

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@@ -463,7 +463,7 @@

Definition at line 1035 of file helios_vector_types.h.

+

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@@ -482,7 +482,7 @@

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+

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@@ -502,7 +502,7 @@

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+

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@@ -521,7 +521,7 @@

Definition at line 1026 of file helios_vector_types.h.

+

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diff --git a/doc/html/structhelios_1_1_r_g_bcolor.html b/doc/html/structhelios_1_1_r_g_bcolor.html index 1aca7222a..4547f6bd9 100644 --- a/doc/html/structhelios_1_1_r_g_bcolor.html +++ b/doc/html/structhelios_1_1_r_g_bcolor.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
@@ -163,7 +163,7 @@

Detailed Description

R-G-B color vector.

-

Definition at line 841 of file helios_vector_types.h.

+

Definition at line 844 of file helios_vector_types.h.

Constructor & Destructor Documentation

◆ RGBcolor() [1/5]

@@ -190,7 +190,7 @@

Definition at line 855 of file helios_vector_types.h.

+

Definition at line 858 of file helios_vector_types.h.

@@ -237,7 +237,7 @@

Note
If arguments are outside of the range 0 to 1, values are clamped.
-

Definition at line 864 of file helios_vector_types.h.

+

Definition at line 867 of file helios_vector_types.h.

@@ -273,7 +273,7 @@

Note
If arguments are outside of the range 0 to 1, values are clamped.
-

Definition at line 874 of file helios_vector_types.h.

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Note
If arguments are outside of the range 0 to 1, values are clamped.
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Note
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RGBcolor to output stream

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diff --git a/doc/html/structhelios_1_1_spherical_coord.html b/doc/html/structhelios_1_1_spherical_coord.html index e25ccc498..bb3355d3f 100644 --- a/doc/html/structhelios_1_1_spherical_coord.html +++ b/doc/html/structhelios_1_1_spherical_coord.html @@ -38,7 +38,7 @@ Logo -
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@@ -159,7 +159,7 @@

Detailed Description

Vector of spherical coordinates (elevation,azimuth)

-

Definition at line 1468 of file helios_vector_types.h.

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Definition at line 1471 of file helios_vector_types.h.

Constructor & Destructor Documentation

◆ SphericalCoord() [1/3]

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Definition at line 1493 of file helios_vector_types.h.

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SphericalCoord to output stream.

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Definition at line 1487 of file helios_vector_types.h.

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Definition at line 1490 of file helios_vector_types.h.

diff --git a/doc/html/structhelios_1_1_time.html b/doc/html/structhelios_1_1_time.html index 009ed8d6c..259d597f7 100644 --- a/doc/html/structhelios_1_1_time.html +++ b/doc/html/structhelios_1_1_time.html @@ -38,7 +38,7 @@ Logo -
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Time vector.

See also
make_Time()
-

Definition at line 1349 of file helios_vector_types.h.

+

Definition at line 1352 of file helios_vector_types.h.

Constructor & Destructor Documentation

◆ Time() [1/3]

@@ -181,7 +181,7 @@

Definition at line 1359 of file helios_vector_types.h.

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Definition at line 1362 of file helios_vector_types.h.

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Definition at line 1370 of file helios_vector_types.h.

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Definition at line 1459 of file helios_vector_types.h.

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Definition at line 1455 of file helios_vector_types.h.

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Definition at line 1458 of file helios_vector_types.h.

@@ -360,7 +360,7 @@

Time to output stream.

-

Definition at line 1412 of file helios_vector_types.h.

+

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@@ -379,7 +379,7 @@

Definition at line 1356 of file helios_vector_types.h.

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Definition at line 1354 of file helios_vector_types.h.

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Definition at line 1352 of file helios_vector_types.h.

+

Definition at line 1355 of file helios_vector_types.h.

diff --git a/doc/html/structhelios_1_1_timer.html b/doc/html/structhelios_1_1_timer.html index 52ec2fa61..118b0ff97 100644 --- a/doc/html/structhelios_1_1_timer.html +++ b/doc/html/structhelios_1_1_timer.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
diff --git a/doc/html/structhelios_1_1int2.html b/doc/html/structhelios_1_1int2.html index cd7e748f7..f39c2375f 100644 --- a/doc/html/structhelios_1_1int2.html +++ b/doc/html/structhelios_1_1int2.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
diff --git a/doc/html/structhelios_1_1int3.html b/doc/html/structhelios_1_1int3.html index 204c5ab6b..4a3d4f784 100644 --- a/doc/html/structhelios_1_1int3.html +++ b/doc/html/structhelios_1_1int3.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
diff --git a/doc/html/structhelios_1_1int4.html b/doc/html/structhelios_1_1int4.html index c9dd34a2b..54d74e2ae 100644 --- a/doc/html/structhelios_1_1int4.html +++ b/doc/html/structhelios_1_1int4.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
diff --git a/doc/html/structhelios_1_1vec2.html b/doc/html/structhelios_1_1vec2.html index 63d44b2b7..16afa665e 100644 --- a/doc/html/structhelios_1_1vec2.html +++ b/doc/html/structhelios_1_1vec2.html @@ -38,7 +38,7 @@ Logo -
 v1.3.19 +
 v1.3.20
@@ -116,9 +116,9 @@ - - - + + + @@ -217,7 +217,7 @@

Definition at line 371 of file helios_vector_types.h.

+

Definition at line 372 of file helios_vector_types.h.

@@ -246,7 +246,7 @@

vec2 using a vector of floats.

-

Definition at line 374 of file helios_vector_types.h.

+

Definition at line 375 of file helios_vector_types.h.

@@ -275,7 +275,7 @@

vec2 using an array of floats.

-

Definition at line 382 of file helios_vector_types.h.

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Definition at line 383 of file helios_vector_types.h.

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vec2 using two floats.

-

Definition at line 385 of file helios_vector_types.h.

+

Definition at line 386 of file helios_vector_types.h.

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Returns
magnitude of vector
-

Definition at line 365 of file helios_vector_types.h.

+

Definition at line 366 of file helios_vector_types.h.

- -

◆ normalize()

+ +

◆ normalize()

@@ -353,7 +353,7 @@

Public Member Functions

void normalize ()
 Normalize vector components such that the magnitude is unity.
 
vec2 normalize ()
 Normalize vector components such that the magnitude is unity.
 
float magnitude () const
 Compute the vector magnitude.
 
- + @@ -397,7 +397,7 @@

vec2 vectors

-

Definition at line 492 of file helios_vector_types.h.

+

Definition at line 493 of file helios_vector_types.h.

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vec2 vectors.

-

Definition at line 436 of file helios_vector_types.h.

+

Definition at line 437 of file helios_vector_types.h.

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Definition at line 476 of file helios_vector_types.h.

+

Definition at line 477 of file helios_vector_types.h.

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vec2 vectors.

-

Definition at line 440 of file helios_vector_types.h.

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Definition at line 441 of file helios_vector_types.h.

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Definition at line 456 of file helios_vector_types.h.

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Definition at line 457 of file helios_vector_types.h.

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vec2 vector.

-

Definition at line 444 of file helios_vector_types.h.

+

Definition at line 445 of file helios_vector_types.h.

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Definition at line 496 of file helios_vector_types.h.

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Definition at line 497 of file helios_vector_types.h.

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vec2 vectors.

-

Definition at line 464 of file helios_vector_types.h.

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Definition at line 465 of file helios_vector_types.h.

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Definition at line 468 of file helios_vector_types.h.

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Definition at line 469 of file helios_vector_types.h.

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vec2 vector.

-

Definition at line 450 of file helios_vector_types.h.

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Definition at line 451 of file helios_vector_types.h.

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Definition at line 484 of file helios_vector_types.h.

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vec2 vectors

-

Definition at line 488 of file helios_vector_types.h.

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vec2 to output stream.

-

Definition at line 413 of file helios_vector_types.h.

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Definition at line 414 of file helios_vector_types.h.

diff --git a/doc/html/structhelios_1_1vec3.html b/doc/html/structhelios_1_1vec3.html index 9c6b16a4e..1b545ae20 100644 --- a/doc/html/structhelios_1_1vec3.html +++ b/doc/html/structhelios_1_1vec3.html @@ -38,7 +38,7 @@

@@ -116,9 +116,9 @@
void helios::vec2::normalize vec2 helios::vec2::normalize ( )
-
 v1.3.19 +
 v1.3.20
- - - + + + @@ -192,7 +192,7 @@

Detailed Description

Vector of three elements of type 'float'.

-

Definition at line 502 of file helios_vector_types.h.

+

Definition at line 503 of file helios_vector_types.h.

Constructor & Destructor Documentation

◆ vec3() [1/4]

@@ -220,7 +220,7 @@

Definition at line 530 of file helios_vector_types.h.

+

Definition at line 532 of file helios_vector_types.h.

@@ -249,7 +249,7 @@

vec3 using a vector of floats.

-

Definition at line 533 of file helios_vector_types.h.

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vec3 using an array of floats.

-

Definition at line 542 of file helios_vector_types.h.

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vec3 using three floats.

-

Definition at line 545 of file helios_vector_types.h.

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Definition at line 547 of file helios_vector_types.h.

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Returns
magnitude of vector
-

Definition at line 524 of file helios_vector_types.h.

+

Definition at line 526 of file helios_vector_types.h.

- -

◆ normalize()

+ +

◆ normalize()

@@ -361,7 +361,7 @@

Public Member Functions

void normalize ()
 Normalize vector components such that the magnitude is unity.
 
vec3 normalize ()
 Normalize vector components such that the magnitude is unity.
 
float magnitude () const
 Compute the vector magnitude.
 
- + @@ -376,7 +376,7 @@

Definition at line 513 of file helios_vector_types.h.

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vec3 vectors

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vec3 vectors.

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Definition at line 643 of file helios_vector_types.h.

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vec3 vectors.

-

Definition at line 605 of file helios_vector_types.h.

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Definition at line 623 of file helios_vector_types.h.

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vec3 vector.

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Definition at line 609 of file helios_vector_types.h.

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Definition at line 663 of file helios_vector_types.h.

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vec3 vectors.

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Definition at line 631 of file helios_vector_types.h.

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Definition at line 635 of file helios_vector_types.h.

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vec3 vector.

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Definition at line 616 of file helios_vector_types.h.

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Definition at line 651 of file helios_vector_types.h.

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vec3 vectors

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Definition at line 655 of file helios_vector_types.h.

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vec3 to output stream.

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Definition at line 573 of file helios_vector_types.h.

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Definition at line 510 of file helios_vector_types.h.

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Definition at line 511 of file helios_vector_types.h.

diff --git a/doc/html/structhelios_1_1vec4.html b/doc/html/structhelios_1_1vec4.html index 57ff11fd9..6613fe0db 100644 --- a/doc/html/structhelios_1_1vec4.html +++ b/doc/html/structhelios_1_1vec4.html @@ -38,7 +38,7 @@

@@ -116,9 +116,9 @@
void helios::vec3::normalize vec3 helios::vec3::normalize ( )
-
 v1.3.19 +
 v1.3.20
- - - + + + @@ -195,7 +195,7 @@

Detailed Description

Vector of four elements of type 'float'.

-

Definition at line 671 of file helios_vector_types.h.

+

Definition at line 673 of file helios_vector_types.h.

Constructor & Destructor Documentation

◆ vec4() [1/4]

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Definition at line 702 of file helios_vector_types.h.

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Definition at line 705 of file helios_vector_types.h.

@@ -252,7 +252,7 @@

vec4 using a vector of floats.

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Definition at line 705 of file helios_vector_types.h.

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vec3 using an array of floats.

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Definition at line 715 of file helios_vector_types.h.

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vec4 using four floats.

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Definition at line 718 of file helios_vector_types.h.

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Returns
magnitude of vector.
-

Definition at line 696 of file helios_vector_types.h.

+

Definition at line 699 of file helios_vector_types.h.

- -

◆ normalize()

+ +

◆ normalize()

@@ -369,7 +369,7 @@

Public Member Functions

void normalize ()
 Normalize vector components such that the magnitude is unity.
 
vec4 normalize ()
 Normalize vector components such that the magnitude is unity.
 
float magnitude () const
 Compute the vector magnitude.
 
- + @@ -384,7 +384,7 @@

Definition at line 684 of file helios_vector_types.h.

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vec4 vectors

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Definition at line 829 of file helios_vector_types.h.

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vec4 vectors.

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Definition at line 769 of file helios_vector_types.h.

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Definition at line 813 of file helios_vector_types.h.

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vec4 vectors.

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Definition at line 773 of file helios_vector_types.h.

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Definition at line 793 of file helios_vector_types.h.

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vec4 vector.

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Definition at line 777 of file helios_vector_types.h.

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Definition at line 780 of file helios_vector_types.h.

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Definition at line 833 of file helios_vector_types.h.

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vec4 vectors.

-

Definition at line 801 of file helios_vector_types.h.

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Definition at line 804 of file helios_vector_types.h.

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Definition at line 805 of file helios_vector_types.h.

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vec4 vector.

-

Definition at line 785 of file helios_vector_types.h.

+

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@@ -703,7 +703,7 @@

Definition at line 821 of file helios_vector_types.h.

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vec4 vectors

-

Definition at line 825 of file helios_vector_types.h.

+

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@@ -766,7 +766,7 @@

vec4 to output stream.

-

Definition at line 746 of file helios_vector_types.h.

+

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Definition at line 681 of file helios_vector_types.h.

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Definition at line 675 of file helios_vector_types.h.

+

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Definition at line 677 of file helios_vector_types.h.

+

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Definition at line 679 of file helios_vector_types.h.

+

Definition at line 681 of file helios_vector_types.h.

diff --git a/doc/html/structjpg__error__mgr.html b/doc/html/structjpg__error__mgr.html index 427fb8a51..b32881063 100644 --- a/doc/html/structjpg__error__mgr.html +++ b/doc/html/structjpg__error__mgr.html @@ -38,7 +38,7 @@

diff --git a/doc/html/structmy__error__mgr.html b/doc/html/structmy__error__mgr.html index bcab971b4..3e7ca42ed 100644 --- a/doc/html/structmy__error__mgr.html +++ b/doc/html/structmy__error__mgr.html @@ -38,7 +38,7 @@ diff --git a/doc/html/todo.html b/doc/html/todo.html index a959f350f..4f28ff8ed 100644 --- a/doc/html/todo.html +++ b/doc/html/todo.html @@ -38,7 +38,7 @@ diff --git a/doc/html/tomato_8cpp_source.html b/doc/html/tomato_8cpp_source.html index 4bd9ab3c0..f4d9053a1 100644 --- a/doc/html/tomato_8cpp_source.html +++ b/doc/html/tomato_8cpp_source.html @@ -38,7 +38,7 @@ @@ -180,7 +180,7 @@
74 int node_count = round( 2*length*params.shoot_subdivisions );
75
76 vec3 dir = base_direction;
-
77 dir.normalize();
+
77 dir.normalize();
78
79 SphericalCoord base_angle = cart2sphere(dir);
80
@@ -317,35 +317,35 @@
210}
-
interpolateTube
helios::vec3 interpolateTube(const std::vector< helios::vec3 > &P, float frac)
Interpolate the position of a point along a tube.
Definition CanopyGenerator.cpp:2985
+
interpolateTube
helios::vec3 interpolateTube(const std::vector< helios::vec3 > &P, float frac)
Interpolate the position of a point along a tube.
Definition CanopyGenerator.cpp:3226
CanopyGenerator::tomato
uint tomato(const TomatoParameters &params, const helios::vec3 &origin)
Function to add an individual tomato plant.
Definition tomato.cpp:139
helios::Context
Stores the state associated with simulation.
Definition Context.h:1882
-
helios::Context::translatePrimitive
void translatePrimitive(uint UUID, const vec3 &shift)
Translate a primitive using its UUID.
Definition Context.cpp:1401
-
helios::Context::randu
float randu()
Draw a random number from a uniform distribution between 0 and 1.
Definition Context.cpp:1173
-
helios::Context::rotatePrimitive
void rotatePrimitive(uint UUID, float rot, const char *axis)
Rotate a primitive about the x, y, or z axis using its UUID.
Definition Context.cpp:1415
-
helios::Context::addSphere
std::vector< uint > addSphere(uint Ndivs, const vec3 &center, float radius)
Add a spherical compound object to the Context.
Definition Context.cpp:5523
-
helios::Context::addTube
std::vector< uint > addTube(uint Ndivs, const std::vector< vec3 > &nodes, const std::vector< float > &radius)
Add a 3D tube compound object to the Context.
Definition Context.cpp:5807
-
helios::Context::addTile
std::vector< uint > addTile(const vec3 &center, const vec2 &size, const SphericalCoord &rotation, const int2 &subdiv)
Add a patch that is subdivided into a regular grid of sub-patches (tiled)
Definition Context.cpp:5686
+
helios::Context::translatePrimitive
void translatePrimitive(uint UUID, const vec3 &shift)
Translate a primitive using its UUID.
Definition Context.cpp:1396
+
helios::Context::randu
float randu()
Draw a random number from a uniform distribution between 0 and 1.
Definition Context.cpp:1168
+
helios::Context::rotatePrimitive
void rotatePrimitive(uint UUID, float rot, const char *axis)
Rotate a primitive about the x, y, or z axis using its UUID.
Definition Context.cpp:1410
+
helios::Context::addSphere
std::vector< uint > addSphere(uint Ndivs, const vec3 &center, float radius)
Add a spherical compound object to the Context.
Definition Context.cpp:5590
+
helios::Context::addTube
std::vector< uint > addTube(uint Ndivs, const std::vector< vec3 > &nodes, const std::vector< float > &radius)
Add a 3D tube compound object to the Context.
Definition Context.cpp:5874
+
helios::Context::addTile
std::vector< uint > addTile(const vec3 &center, const vec2 &size, const SphericalCoord &rotation, const int2 &subdiv)
Add a patch that is subdivided into a regular grid of sub-patches (tiled)
Definition Context.cpp:5753
helios::cart2sphere
SphericalCoord cart2sphere(const vec3 &Cartesian)
Convert Cartesian coordinates to spherical coordinates.
Definition global.cpp:610
helios::sphere2cart
vec3 sphere2cart(const SphericalCoord &Spherical)
Convert Spherical coordinates to Cartesian coordinates.
Definition global.cpp:617
-
helios::make_vec2
vec2 make_vec2(float x, float y)
Make a vec2 from two floats.
Definition helios_vector_types.h:432
-
helios::make_vec3
vec3 make_vec3(float x, float y, float z)
Make a vec3 from three floats.
Definition helios_vector_types.h:587
-
helios::make_SphericalCoord
SphericalCoord make_SphericalCoord(float elevation_radians, float azimuth_radians)
Make a SphericalCoord by specifying elevation and azimuth.
Definition helios_vector_types.h:1536
-
TomatoParameters
Parameters defining the tomato plant canopy.
Definition CanopyGenerator.h:556
-
TomatoParameters::shoot_subdivisions
int shoot_subdivisions
Number of radial subdivisions for shoot tubes.
Definition CanopyGenerator.h:574
-
TomatoParameters::leaf_length
float leaf_length
Maximum width of leaves.
Definition CanopyGenerator.h:562
-
TomatoParameters::fruit_color
helios::RGBcolor fruit_color
Color of tomato fruit.
Definition CanopyGenerator.h:598
-
TomatoParameters::leaf_subdivisions
helios::int2 leaf_subdivisions
Number of sub-division segments per leaf.
Definition CanopyGenerator.h:565
-
TomatoParameters::fruit_subdivisions
uint fruit_subdivisions
Number of azimuthal and zenithal subdivisions making up fruit (will result in roughly fruit_subdivisi...
Definition CanopyGenerator.h:601
-
TomatoParameters::shoot_color
helios::RGBcolor shoot_color
Color of shoots.
Definition CanopyGenerator.h:571
-
TomatoParameters::leaf_texture_file
std::string leaf_texture_file
Path to texture map file for leaves.
Definition CanopyGenerator.h:568
-
TomatoParameters::plant_height
float plant_height
Height of the plant.
Definition CanopyGenerator.h:583
-
TomatoParameters::fruit_radius
float fruit_radius
Radius of tomato fruit.
Definition CanopyGenerator.h:595
-
helios::SphericalCoord
Vector of spherical coordinates (elevation,azimuth)
Definition helios_vector_types.h:1468
-
helios::SphericalCoord::elevation
const float & elevation
Elevation angle (radians)
Definition helios_vector_types.h:1482
-
helios::SphericalCoord::azimuth
float azimuth
Azimuthal angle (radians)
Definition helios_vector_types.h:1489
-
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:502
-
helios::vec3::normalize
void normalize()
Normalize vector components such that the magnitude is unity.
Definition helios_vector_types.h:513
+
helios::make_vec2
vec2 make_vec2(float x, float y)
Make a vec2 from two floats.
Definition helios_vector_types.h:433
+
helios::make_vec3
vec3 make_vec3(float x, float y, float z)
Make a vec3 from three floats.
Definition helios_vector_types.h:589
+
helios::make_SphericalCoord
SphericalCoord make_SphericalCoord(float elevation_radians, float azimuth_radians)
Make a SphericalCoord by specifying elevation and azimuth.
Definition helios_vector_types.h:1539
+
TomatoParameters
Parameters defining the tomato plant canopy.
Definition CanopyGenerator.h:565
+
TomatoParameters::shoot_subdivisions
int shoot_subdivisions
Number of radial subdivisions for shoot tubes.
Definition CanopyGenerator.h:600
+
TomatoParameters::leaf_length
float leaf_length
Maximum width of leaves.
Definition CanopyGenerator.h:588
+
TomatoParameters::fruit_color
helios::RGBcolor fruit_color
Color of tomato fruit.
Definition CanopyGenerator.h:618
+
TomatoParameters::leaf_subdivisions
helios::int2 leaf_subdivisions
Number of sub-division segments per leaf.
Definition CanopyGenerator.h:591
+
TomatoParameters::fruit_subdivisions
uint fruit_subdivisions
Number of azimuthal and zenithal subdivisions making up fruit (will result in roughly fruit_subdivisi...
Definition CanopyGenerator.h:621
+
TomatoParameters::shoot_color
helios::RGBcolor shoot_color
Color of shoots.
Definition CanopyGenerator.h:597
+
TomatoParameters::leaf_texture_file
std::string leaf_texture_file
Path to texture map file for leaves.
Definition CanopyGenerator.h:594
+
TomatoParameters::plant_height
float plant_height
Height of the plant.
Definition CanopyGenerator.h:609
+
TomatoParameters::fruit_radius
float fruit_radius
Radius of tomato fruit.
Definition CanopyGenerator.h:615
+
helios::SphericalCoord
Vector of spherical coordinates (elevation,azimuth)
Definition helios_vector_types.h:1471
+
helios::SphericalCoord::elevation
const float & elevation
Elevation angle (radians)
Definition helios_vector_types.h:1485
+
helios::SphericalCoord::azimuth
float azimuth
Azimuthal angle (radians)
Definition helios_vector_types.h:1492
+
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:503
+
helios::vec3::normalize
vec3 normalize()
Normalize vector components such that the magnitude is unity.
Definition helios_vector_types.h:514
diff --git a/doc/html/usergroup0.html b/doc/html/usergroup0.html index a2b5bc421..8e243f6d6 100644 --- a/doc/html/usergroup0.html +++ b/doc/html/usergroup0.html @@ -38,7 +38,7 @@
diff --git a/doc/html/visualizer_basics.html b/doc/html/visualizer_basics.html index e8e7d9ab8..8f7427fce 100644 --- a/doc/html/visualizer_basics.html +++ b/doc/html/visualizer_basics.html @@ -38,7 +38,7 @@ diff --git a/doc/html/visualizer_pdata.html b/doc/html/visualizer_pdata.html index e3e3481d1..98d829502 100644 --- a/doc/html/visualizer_pdata.html +++ b/doc/html/visualizer_pdata.html @@ -38,7 +38,7 @@ diff --git a/doc/html/walnut_8cpp_source.html b/doc/html/walnut_8cpp_source.html index fd0e0589b..254040b7f 100644 --- a/doc/html/walnut_8cpp_source.html +++ b/doc/html/walnut_8cpp_source.html @@ -38,7 +38,7 @@ @@ -383,7 +383,7 @@
277
278 //unit vector perpendicular to parent branch
279 vec3 bnorm = cross( make_vec3(0,1,1), nbase );
-
280 bnorm.normalize();
+
280 bnorm.normalize();
281
282 //vector perpendicular to new branch
283 vec3 pvec1 = cross( bnorm, nbase );
@@ -393,9 +393,9 @@
287
288 //direction of new branch base - apply random rotation about parent
289 vec3 bnorm1 = rotatePointAboutLine( bnorm, make_vec3(0,0,0), nbase, phi0 );
-
290 bnorm1.normalize();
+
290 bnorm1.normalize();
291 vec3 bnorm2 = rotatePointAboutLine( bnorm, make_vec3(0,0,0), nbase, phi0+M_PI+getVariation(0.5,generator) );
-
292 bnorm2.normalize();
+
292 bnorm2.normalize();
293
294 float L1 = (0.5+0.5*unif_distribution(generator))*L;
295 float L2 = (0.5+0.5*unif_distribution(generator))*L;
@@ -408,7 +408,7 @@
302 vec3 pend1 = bnorm1 + 0.2*L1*make_vec3(0,0,1);
303 pend1.normalize();
304 vec3 pend2 = bnorm2 + 0.2*L2*make_vec3(0,0,1);
-
305 pend2.normalize();
+
305 pend2.normalize();
306
307 uint ID1 = addBranch( pbase, 0.5*L1*bnorm1, rbase1, pbase+pend1*L1, L1*make_vec3(0,0,1.f+getVariation(1,generator)), 0.15*rbase1, 8, params, generator, context );
308 uint ID2 = addBranch( pbase, 0.5*L2*bnorm2, rbase2, pbase+pend2*L2, L2*make_vec3(0,0,1.f+getVariation(1,generator)), 0.15*rbase2, 8, params, generator, context );
@@ -475,50 +475,50 @@
368}
-
interpolateTube
helios::vec3 interpolateTube(const std::vector< helios::vec3 > &P, float frac)
Interpolate the position of a point along a tube.
Definition CanopyGenerator.cpp:2985
-
getVariation
float getVariation(float V, std::minstd_rand0 &generator)
Draw a random number from a uniform distribution between -V and V.
Definition CanopyGenerator.cpp:2775
+
interpolateTube
helios::vec3 interpolateTube(const std::vector< helios::vec3 > &P, float frac)
Interpolate the position of a point along a tube.
Definition CanopyGenerator.cpp:3226
+
getVariation
float getVariation(float V, std::minstd_rand0 &generator)
Draw a random number from a uniform distribution between -V and V.
Definition CanopyGenerator.cpp:3003
CanopyGenerator::walnut
uint walnut(const WalnutCanopyParameters &params, const helios::vec3 &origin)
Function to add an individual walnut tree.
Definition walnut.cpp:333
-
helios::CompoundObject::getPrimitiveUUIDs
std::vector< uint > getPrimitiveUUIDs() const
Get the UUIDs for all primitives contained in the object.
Definition Context.cpp:2241
+
helios::CompoundObject::getPrimitiveUUIDs
std::vector< uint > getPrimitiveUUIDs() const
Get the UUIDs for all primitives contained in the object.
Definition Context.cpp:2236
helios::Context
Stores the state associated with simulation.
Definition Context.h:1882
-
helios::Context::translatePrimitive
void translatePrimitive(uint UUID, const vec3 &shift)
Translate a primitive using its UUID.
Definition Context.cpp:1401
-
helios::Context::deletePrimitive
void deletePrimitive(uint UUID)
Delete a single primitive from the context.
Definition Context.cpp:1531
-
helios::Context::getObjectPointer
CompoundObject * getObjectPointer(uint ObjID) const
Get a pointer to a Compound Object.
Definition Context.cpp:2559
-
helios::Context::rotatePrimitive
void rotatePrimitive(uint UUID, float rot, const char *axis)
Rotate a primitive about the x, y, or z axis using its UUID.
Definition Context.cpp:1415
-
helios::Context::copyPrimitive
uint copyPrimitive(uint UUID)
Make a copy of a primitive from the context.
Definition Context.cpp:1573
-
helios::Context::scalePrimitive
void scalePrimitive(uint UUID, const helios::vec3 &S)
Scale a primitive using its UUID relative to the origin (0,0,0)
Definition Context.cpp:1486
-
helios::Context::getTubeObjectPointer
Tube * getTubeObjectPointer(uint ObjID) const
Get a pointer to a Tube Compound Object.
Definition Context.cpp:3471
-
helios::Tube::getNodeRadii
std::vector< float > getNodeRadii() const
Get the radius at each of the tube object nodes.
Definition Context.cpp:3493
-
helios::Tube::getNodes
std::vector< helios::vec3 > getNodes() const
Get the Cartesian coordinates of each of the tube object nodes.
Definition Context.cpp:3478
+
helios::Context::translatePrimitive
void translatePrimitive(uint UUID, const vec3 &shift)
Translate a primitive using its UUID.
Definition Context.cpp:1396
+
helios::Context::deletePrimitive
void deletePrimitive(uint UUID)
Delete a single primitive from the context.
Definition Context.cpp:1526
+
helios::Context::getObjectPointer
CompoundObject * getObjectPointer(uint ObjID) const
Get a pointer to a Compound Object.
Definition Context.cpp:2554
+
helios::Context::rotatePrimitive
void rotatePrimitive(uint UUID, float rot, const char *axis)
Rotate a primitive about the x, y, or z axis using its UUID.
Definition Context.cpp:1410
+
helios::Context::copyPrimitive
uint copyPrimitive(uint UUID)
Make a copy of a primitive from the context.
Definition Context.cpp:1568
+
helios::Context::scalePrimitive
void scalePrimitive(uint UUID, const helios::vec3 &S)
Scale a primitive using its UUID relative to the origin (0,0,0)
Definition Context.cpp:1481
+
helios::Context::getTubeObjectPointer
Tube * getTubeObjectPointer(uint ObjID) const
Get a pointer to a Tube Compound Object.
Definition Context.cpp:3466
+
helios::Tube::getNodeRadii
std::vector< float > getNodeRadii() const
Get the radius at each of the tube object nodes.
Definition Context.cpp:3488
+
helios::Tube::getNodes
std::vector< helios::vec3 > getNodes() const
Get the Cartesian coordinates of each of the tube object nodes.
Definition Context.cpp:3473
helios::rotatePointAboutLine
vec3 rotatePointAboutLine(const vec3 &point, const vec3 &line_base, const vec3 &line_direction, float theta)
Rotate a 3D vector about an arbitrary line.
Definition global.cpp:140
-
helios::Context::addTubeObject
uint addTubeObject(uint radial_subdivisions, const std::vector< vec3 > &nodes, const std::vector< float > &radius)
Add a 3D tube compound object to the Context.
Definition Context.cpp:4638
-
helios::Context::addSphere
std::vector< uint > addSphere(uint Ndivs, const vec3 &center, float radius)
Add a spherical compound object to the Context.
Definition Context.cpp:5523
+
helios::Context::addTubeObject
uint addTubeObject(uint radial_subdivisions, const std::vector< vec3 > &nodes, const std::vector< float > &radius)
Add a 3D tube compound object to the Context.
Definition Context.cpp:4690
+
helios::Context::addSphere
std::vector< uint > addSphere(uint Ndivs, const vec3 &center, float radius)
Add a spherical compound object to the Context.
Definition Context.cpp:5590
helios::cart2sphere
SphericalCoord cart2sphere(const vec3 &Cartesian)
Convert Cartesian coordinates to spherical coordinates.
Definition global.cpp:610
-
helios::spline_interp3
helios::vec3 spline_interp3(float u, const vec3 &x_start, const vec3 &tan_start, const vec3 &x_end, const vec3 &tan_end)
Function to perform cubic Hermite spline interpolation.
Definition global.cpp:2684
-
helios::Context::addTriangle
uint addTriangle(const helios::vec3 &vertex0, const helios::vec3 &vertex1, const helios::vec3 &vertex2)
Add new Triangle geometric primitive.
Definition Context.cpp:1323
-
helios::make_vec2
vec2 make_vec2(float x, float y)
Make a vec2 from two floats.
Definition helios_vector_types.h:432
-
helios::make_vec3
vec3 make_vec3(float x, float y, float z)
Make a vec3 from three floats.
Definition helios_vector_types.h:587
-
helios::cross
vec3 cross(const vec3 &a, const vec3 &b)
Cross product of two vec3 vectors.
Definition helios_vector_types.h:597
-
WalnutCanopyParameters
Parameters defining the walnut tree canopy.
Definition CanopyGenerator.h:665
-
WalnutCanopyParameters::wood_subdivisions
int wood_subdivisions
Number of radial subdivisions for branch tubes.
Definition CanopyGenerator.h:683
-
WalnutCanopyParameters::fruit_texture_file
std::string fruit_texture_file
Texture map for walnut fruit.
Definition CanopyGenerator.h:705
-
WalnutCanopyParameters::leaf_subdivisions
helios::int2 leaf_subdivisions
Number of sub-division segments per leaf.
Definition CanopyGenerator.h:674
-
WalnutCanopyParameters::fruit_subdivisions
uint fruit_subdivisions
Number of azimuthal and zenithal subdivisions making up fruit (will result in roughly fruit_subdivisi...
Definition CanopyGenerator.h:708
-
WalnutCanopyParameters::trunk_radius
float trunk_radius
Radius of trunk.
Definition CanopyGenerator.h:686
-
WalnutCanopyParameters::fruit_radius
float fruit_radius
Radius of walnuts.
Definition CanopyGenerator.h:702
-
WalnutCanopyParameters::leaf_texture_file
std::string leaf_texture_file
Path to texture map file for leaves.
Definition CanopyGenerator.h:677
-
WalnutCanopyParameters::leaf_length
float leaf_length
Maximum length of leaves along midrib.
Definition CanopyGenerator.h:671
-
WalnutCanopyParameters::wood_texture_file
std::string wood_texture_file
Path to texture map file for wood/branches.
Definition CanopyGenerator.h:680
-
WalnutCanopyParameters::branch_length
helios::vec3 branch_length
Average length of branches in each recursive branch level. For example, the first (....
Definition CanopyGenerator.h:692
-
WalnutCanopyParameters::trunk_height
float trunk_height
Height of the trunk.
Definition CanopyGenerator.h:689
-
helios::SphericalCoord::azimuth
float azimuth
Azimuthal angle (radians)
Definition helios_vector_types.h:1489
+
helios::spline_interp3
helios::vec3 spline_interp3(float u, const vec3 &x_start, const vec3 &tan_start, const vec3 &x_end, const vec3 &tan_end)
Function to perform cubic Hermite spline interpolation.
Definition global.cpp:2686
+
helios::Context::addTriangle
uint addTriangle(const helios::vec3 &vertex0, const helios::vec3 &vertex1, const helios::vec3 &vertex2)
Add new Triangle geometric primitive.
Definition Context.cpp:1318
+
helios::make_vec2
vec2 make_vec2(float x, float y)
Make a vec2 from two floats.
Definition helios_vector_types.h:433
+
helios::make_vec3
vec3 make_vec3(float x, float y, float z)
Make a vec3 from three floats.
Definition helios_vector_types.h:589
+
helios::cross
vec3 cross(const vec3 &a, const vec3 &b)
Cross product of two vec3 vectors.
Definition helios_vector_types.h:599
+
WalnutCanopyParameters
Parameters defining the walnut tree canopy.
Definition CanopyGenerator.h:696
+
WalnutCanopyParameters::wood_subdivisions
int wood_subdivisions
Number of radial subdivisions for branch tubes.
Definition CanopyGenerator.h:731
+
WalnutCanopyParameters::fruit_texture_file
std::string fruit_texture_file
Texture map for walnut fruit.
Definition CanopyGenerator.h:753
+
WalnutCanopyParameters::leaf_subdivisions
helios::int2 leaf_subdivisions
Number of sub-division segments per leaf.
Definition CanopyGenerator.h:722
+
WalnutCanopyParameters::fruit_subdivisions
uint fruit_subdivisions
Number of azimuthal and zenithal subdivisions making up fruit (will result in roughly fruit_subdivisi...
Definition CanopyGenerator.h:756
+
WalnutCanopyParameters::trunk_radius
float trunk_radius
Radius of trunk.
Definition CanopyGenerator.h:734
+
WalnutCanopyParameters::fruit_radius
float fruit_radius
Radius of walnuts.
Definition CanopyGenerator.h:750
+
WalnutCanopyParameters::leaf_texture_file
std::string leaf_texture_file
Path to texture map file for leaves.
Definition CanopyGenerator.h:725
+
WalnutCanopyParameters::leaf_length
float leaf_length
Maximum length of leaves along midrib.
Definition CanopyGenerator.h:719
+
WalnutCanopyParameters::wood_texture_file
std::string wood_texture_file
Path to texture map file for wood/branches.
Definition CanopyGenerator.h:728
+
WalnutCanopyParameters::branch_length
helios::vec3 branch_length
Average length of branches in each recursive branch level. For example, the first (....
Definition CanopyGenerator.h:740
+
WalnutCanopyParameters::trunk_height
float trunk_height
Height of the trunk.
Definition CanopyGenerator.h:737
+
helios::SphericalCoord::azimuth
float azimuth
Azimuthal angle (radians)
Definition helios_vector_types.h:1492
helios::int2::y
int y
Second element in vector.
Definition helios_vector_types.h:50
helios::int2::x
int x
First element in vector.
Definition helios_vector_types.h:48
helios::vec2
Vector of two elements of type 'float'.
Definition helios_vector_types.h:346
-
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:502
-
helios::vec3::x
float x
First element in vector.
Definition helios_vector_types.h:506
-
helios::vec3::z
float z
Third element in vector.
Definition helios_vector_types.h:510
-
helios::vec3::normalize
void normalize()
Normalize vector components such that the magnitude is unity.
Definition helios_vector_types.h:513
-
helios::vec3::y
float y
Second element in vector.
Definition helios_vector_types.h:508
+
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:503
+
helios::vec3::normalize
vec3 normalize()
Normalize vector components such that the magnitude is unity.
Definition helios_vector_types.h:514
+
helios::vec3::x
float x
First element in vector.
Definition helios_vector_types.h:507
+
helios::vec3::z
float z
Third element in vector.
Definition helios_vector_types.h:511
+
helios::vec3::y
float y
Second element in vector.
Definition helios_vector_types.h:509
diff --git a/doc/html/whitespruce_8cpp_source.html b/doc/html/whitespruce_8cpp_source.html index 70f204d82..002f70c94 100644 --- a/doc/html/whitespruce_8cpp_source.html +++ b/doc/html/whitespruce_8cpp_source.html @@ -38,7 +38,7 @@
@@ -258,34 +258,34 @@
151}
-
interpolateTube
helios::vec3 interpolateTube(const std::vector< helios::vec3 > &P, float frac)
Interpolate the position of a point along a tube.
Definition CanopyGenerator.cpp:2985
-
getVariation
float getVariation(float V, std::minstd_rand0 &generator)
Draw a random number from a uniform distribution between -V and V.
Definition CanopyGenerator.cpp:2775
+
interpolateTube
helios::vec3 interpolateTube(const std::vector< helios::vec3 > &P, float frac)
Interpolate the position of a point along a tube.
Definition CanopyGenerator.cpp:3226
+
getVariation
float getVariation(float V, std::minstd_rand0 &generator)
Draw a random number from a uniform distribution between -V and V.
Definition CanopyGenerator.cpp:3003
CanopyGenerator::whitespruce
uint whitespruce(const WhiteSpruceCanopyParameters &params, const helios::vec3 &origin)
Function to add an individual white spruce tree.
Definition whitespruce.cpp:6
-
helios::Context::translatePrimitive
void translatePrimitive(uint UUID, const vec3 &shift)
Translate a primitive using its UUID.
Definition Context.cpp:1401
-
helios::Context::rotatePrimitive
void rotatePrimitive(uint UUID, float rot, const char *axis)
Rotate a primitive about the x, y, or z axis using its UUID.
Definition Context.cpp:1415
-
helios::Context::addTube
std::vector< uint > addTube(uint Ndivs, const std::vector< vec3 > &nodes, const std::vector< float > &radius)
Add a 3D tube compound object to the Context.
Definition Context.cpp:5807
-
helios::Context::addTile
std::vector< uint > addTile(const vec3 &center, const vec2 &size, const SphericalCoord &rotation, const int2 &subdiv)
Add a patch that is subdivided into a regular grid of sub-patches (tiled)
Definition Context.cpp:5686
+
helios::Context::translatePrimitive
void translatePrimitive(uint UUID, const vec3 &shift)
Translate a primitive using its UUID.
Definition Context.cpp:1396
+
helios::Context::rotatePrimitive
void rotatePrimitive(uint UUID, float rot, const char *axis)
Rotate a primitive about the x, y, or z axis using its UUID.
Definition Context.cpp:1410
+
helios::Context::addTube
std::vector< uint > addTube(uint Ndivs, const std::vector< vec3 > &nodes, const std::vector< float > &radius)
Add a 3D tube compound object to the Context.
Definition Context.cpp:5874
+
helios::Context::addTile
std::vector< uint > addTile(const vec3 &center, const vec2 &size, const SphericalCoord &rotation, const int2 &subdiv)
Add a patch that is subdivided into a regular grid of sub-patches (tiled)
Definition Context.cpp:5753
helios::cart2sphere
SphericalCoord cart2sphere(const vec3 &Cartesian)
Convert Cartesian coordinates to spherical coordinates.
Definition global.cpp:610
-
helios::make_vec2
vec2 make_vec2(float x, float y)
Make a vec2 from two floats.
Definition helios_vector_types.h:432
-
helios::make_vec3
vec3 make_vec3(float x, float y, float z)
Make a vec3 from three floats.
Definition helios_vector_types.h:587
-
helios::make_SphericalCoord
SphericalCoord make_SphericalCoord(float elevation_radians, float azimuth_radians)
Make a SphericalCoord by specifying elevation and azimuth.
Definition helios_vector_types.h:1536
-
WhiteSpruceCanopyParameters
Parameters defining the white spruce.
Definition CanopyGenerator.h:491
-
WhiteSpruceCanopyParameters::needle_subdivisions
helios::int2 needle_subdivisions
Number of sub-division segments per needle.
Definition CanopyGenerator.h:503
-
WhiteSpruceCanopyParameters::wood_texture_file
std::string wood_texture_file
Path to texture map file for trunks/branches.
Definition CanopyGenerator.h:509
-
WhiteSpruceCanopyParameters::needle_length
float needle_length
Length of needles.
Definition CanopyGenerator.h:500
-
WhiteSpruceCanopyParameters::trunk_height
float trunk_height
Distance between the ground and top of trunks.
Definition CanopyGenerator.h:515
-
WhiteSpruceCanopyParameters::level_spacing
float level_spacing
Vertical spacing between branching levels.
Definition CanopyGenerator.h:530
-
WhiteSpruceCanopyParameters::shoot_radius
float shoot_radius
Radius of shoot branches.
Definition CanopyGenerator.h:527
-
WhiteSpruceCanopyParameters::wood_subdivisions
int wood_subdivisions
Number of radial subdivisions for trunk/cordon/shoot tubes.
Definition CanopyGenerator.h:512
-
WhiteSpruceCanopyParameters::base_height
float base_height
Height at which branches start.
Definition CanopyGenerator.h:521
-
WhiteSpruceCanopyParameters::crown_radius
float crown_radius
Radius of the crown at the base.
Definition CanopyGenerator.h:524
-
WhiteSpruceCanopyParameters::needle_color
helios::RGBcolor needle_color
Color of needles.
Definition CanopyGenerator.h:506
-
WhiteSpruceCanopyParameters::trunk_radius
float trunk_radius
Radius of the trunk at the base.
Definition CanopyGenerator.h:518
-
WhiteSpruceCanopyParameters::branches_per_level
int branches_per_level
Number of primary branches on the bottom level.
Definition CanopyGenerator.h:533
-
helios::SphericalCoord
Vector of spherical coordinates (elevation,azimuth)
Definition helios_vector_types.h:1468
-
helios::SphericalCoord::elevation
const float & elevation
Elevation angle (radians)
Definition helios_vector_types.h:1482
-
helios::SphericalCoord::azimuth
float azimuth
Azimuthal angle (radians)
Definition helios_vector_types.h:1489
-
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:502
+
helios::make_vec2
vec2 make_vec2(float x, float y)
Make a vec2 from two floats.
Definition helios_vector_types.h:433
+
helios::make_vec3
vec3 make_vec3(float x, float y, float z)
Make a vec3 from three floats.
Definition helios_vector_types.h:589
+
helios::make_SphericalCoord
SphericalCoord make_SphericalCoord(float elevation_radians, float azimuth_radians)
Make a SphericalCoord by specifying elevation and azimuth.
Definition helios_vector_types.h:1539
+
WhiteSpruceCanopyParameters
Parameters defining the white spruce.
Definition CanopyGenerator.h:489
+
WhiteSpruceCanopyParameters::needle_subdivisions
helios::int2 needle_subdivisions
Number of sub-division segments per needle.
Definition CanopyGenerator.h:518
+
WhiteSpruceCanopyParameters::wood_texture_file
std::string wood_texture_file
Path to texture map file for trunks/branches.
Definition CanopyGenerator.h:524
+
WhiteSpruceCanopyParameters::needle_length
float needle_length
Length of needles.
Definition CanopyGenerator.h:515
+
WhiteSpruceCanopyParameters::trunk_height
float trunk_height
Distance between the ground and top of trunks.
Definition CanopyGenerator.h:530
+
WhiteSpruceCanopyParameters::level_spacing
float level_spacing
Vertical spacing between branching levels.
Definition CanopyGenerator.h:545
+
WhiteSpruceCanopyParameters::shoot_radius
float shoot_radius
Radius of shoot branches.
Definition CanopyGenerator.h:542
+
WhiteSpruceCanopyParameters::wood_subdivisions
int wood_subdivisions
Number of radial subdivisions for trunk/cordon/shoot tubes.
Definition CanopyGenerator.h:527
+
WhiteSpruceCanopyParameters::base_height
float base_height
Height at which branches start.
Definition CanopyGenerator.h:536
+
WhiteSpruceCanopyParameters::crown_radius
float crown_radius
Radius of the crown at the base.
Definition CanopyGenerator.h:539
+
WhiteSpruceCanopyParameters::needle_color
helios::RGBcolor needle_color
Color of needles.
Definition CanopyGenerator.h:521
+
WhiteSpruceCanopyParameters::trunk_radius
float trunk_radius
Radius of the trunk at the base.
Definition CanopyGenerator.h:533
+
WhiteSpruceCanopyParameters::branches_per_level
int branches_per_level
Number of primary branches on the bottom level.
Definition CanopyGenerator.h:548
+
helios::SphericalCoord
Vector of spherical coordinates (elevation,azimuth)
Definition helios_vector_types.h:1471
+
helios::SphericalCoord::elevation
const float & elevation
Elevation angle (radians)
Definition helios_vector_types.h:1485
+
helios::SphericalCoord::azimuth
float azimuth
Azimuthal angle (radians)
Definition helios_vector_types.h:1492
+
helios::vec3
Vector of three elements of type 'float'.
Definition helios_vector_types.h:503
diff --git a/plugins/canopygenerator/include/CanopyGenerator.h b/plugins/canopygenerator/include/CanopyGenerator.h index c1c444763..f66b51adb 100644 --- a/plugins/canopygenerator/include/CanopyGenerator.h +++ b/plugins/canopygenerator/include/CanopyGenerator.h @@ -19,12 +19,64 @@ #include "Context.h" #include +class CanopyGenerator; + +//! Base struct class for Canopy parameters +struct BaseCanopyParameters{ + + //! Default constructor + BaseCanopyParameters(); + + /** + * \param[in] canopy_node XML node containing the canopy parameters + */ + BaseCanopyParameters(const pugi::xml_node canopy_node); + + virtual ~BaseCanopyParameters() = default; + + //! Sets canopy parameters from the given XML node + /** + * \param[in] canopy_node XML node containing the canopy parameters + */ + void readParametersFromXML(const pugi::xml_node canopy_node); + + //! Makes the given Canopy generator build a single plant of our canopy type with our parameters at the given position + virtual void buildPlant(CanopyGenerator& canopy_generator, helios::vec3 origin) = 0; + + //! Makes the given Canopy generator build a canopy of our type with our parameters + virtual void buildCanopy(CanopyGenerator& canopy_generator) = 0; + + //! Cartesian (x,y,z) coordinate of the bottom center point of the canopy (i.e., specifying z=0 places the bottom surface of the canopy at z=0). + helios::vec3 canopy_origin; + + //! Azimuthal rotation of the canopy about the canopy origin. Note that if canopy_rotation is not equal to zero, the plant_spacing and plant_count parameters are defined in the x- and y-directions before rotation. + float canopy_rotation; + +}; + //! Parameters defining the homogeneous canopy -struct HomogeneousCanopyParameters{ +struct HomogeneousCanopyParameters : BaseCanopyParameters{ //! Default constructor HomogeneousCanopyParameters(); + /** + * \param[in] canopy_node XML node containing the canopy parameters + */ + HomogeneousCanopyParameters(const pugi::xml_node canopy_node); + + //! Sets canopy parameters from the given XML node + /** + * \param[in] canopy_node XML node containing the canopy parameters + */ + void readParametersFromXML(const pugi::xml_node canopy_node); + + //! Makes the given Canopy generator build a single plant of our canopy type with our parameters at the given position + void buildPlant(CanopyGenerator& canopy_generator, helios::vec3 origin) override; + + //! Makes the given Canopy generator build a canopy of our type with our parameters + void buildCanopy(CanopyGenerator& canopy_generator) override; + //! Length of leaf in x- and y- directions (prior to rotation) helios::vec2 leaf_size; @@ -49,9 +101,6 @@ struct HomogeneousCanopyParameters{ //! Horizontal extent of the canopy in the x- and y-directions. helios::vec2 canopy_extent; - //! Cartesian (x,y,z) coordinate of the bottom center point of the canopy (i.e., specifying z=0 places the bottom surface of the canopy at z=0). - helios::vec3 canopy_origin; - //! std::vector leaf_angle_PDF; @@ -61,11 +110,28 @@ struct HomogeneousCanopyParameters{ }; //! Parameters defining the canopy with spherical crowns -struct SphericalCrownsCanopyParameters{ +struct SphericalCrownsCanopyParameters : BaseCanopyParameters{ //! Default constructor SphericalCrownsCanopyParameters(); + /** + * \param[in] canopy_node XML node containing the canopy parameters + */ + SphericalCrownsCanopyParameters(const pugi::xml_node canopy_node); + + //! Sets canopy parameters from the given XML node + /** + * \param[in] canopy_node XML node containing the canopy parameters + */ + void readParametersFromXML(const pugi::xml_node canopy_node); + + //! Makes the given Canopy generator build a single plant of our canopy type with our parameters at the given position + void buildPlant(CanopyGenerator& canopy_generator, helios::vec3 origin) override; + + //! Makes the given Canopy generator build a canopy of our type with our parameters + void buildCanopy(CanopyGenerator& canopy_generator) override; + //! Length of leaf in x- and y- directions (prior to rotation) helios::vec2 leaf_size; @@ -96,23 +162,34 @@ struct SphericalCrownsCanopyParameters{ //! Number of crowns/plants in the x- and y-directions. helios::int2 plant_count; - //! Cartesian (x,y,z) coordinate of the bottom center point of the canopy (i.e., specifying z=0 places the bottom surface of the canopy at z=0). - helios::vec3 canopy_origin; - - //! Azimuthal rotation of the canopy about the canopy origin. Note that if canopy_rotation is not equal to zero, the plant_spacing and plant_count parameters are defined in the x- and y-directions before rotation. - float canopy_rotation; - //! std::vector leaf_angle_PDF; }; //! Parameters defining the canopy with conical crowns -struct ConicalCrownsCanopyParameters{ +struct ConicalCrownsCanopyParameters : BaseCanopyParameters{ //! Default constructor ConicalCrownsCanopyParameters(); + /** + * \param[in] canopy_node XML node containing the canopy parameters + */ + ConicalCrownsCanopyParameters(const pugi::xml_node canopy_node); + + //! Sets canopy parameters from the given XML node + /** + * \param[in] canopy_node XML node containing the canopy parameters + */ + void readParametersFromXML(const pugi::xml_node canopy_node); + + //! Makes the given Canopy generator build a single plant of our canopy type with our parameters at the given position + void buildPlant(CanopyGenerator& canopy_generator, helios::vec3 origin) override; + + //! Makes the given Canopy generator build a canopy of our type with our parameters + void buildCanopy(CanopyGenerator& canopy_generator) override; + //! Length of leaf in x- and y- directions (prior to rotation) helios::vec2 leaf_size; @@ -146,25 +223,39 @@ struct ConicalCrownsCanopyParameters{ //! Number of crowns/plants in the x- and y-directions. helios::int2 plant_count; - //! Cartesian (x,y,z) coordinate of the bottom center point of the canopy (i.e., specifying z=0 places the bottom surface of the canopy at z=0). - helios::vec3 canopy_origin; - - //! Azimuthal rotation of the canopy about the canopy origin. Note that if canopy_rotation is not equal to zero, the plant_spacing and plant_count parameters are defined in the x- and y-directions before rotation. - float canopy_rotation; - //! std::vector leaf_angle_PDF; }; -//! Parameters defining the grapevine canopy with vertical shoot positioned (VSP) trellis -struct VSPGrapevineParameters{ +struct BaseGrapeVineParameters : BaseCanopyParameters{ //! Default constructor - VSPGrapevineParameters(); + BaseGrapeVineParameters(); + + /** + * \param[in] canopy_node XML node containing the canopy parameters + */ + BaseGrapeVineParameters(const pugi::xml_node canopy_node); + + virtual ~BaseGrapeVineParameters() = default; + + //! Sets canopy parameters from the given XML node + /** + * \param[in] canopy_node XML node containing the canopy parameters + */ + void readParametersFromXML(const pugi::xml_node canopy_node); + + //! Makes the given Canopy generator build a single plant of our canopy type with our parameters at the given position + void buildPlant(CanopyGenerator& canopy_generator, helios::vec3 origin) override; + + //! Makes the given Canopy generator build a canopy of our type with our parameters + void buildCanopy(CanopyGenerator& canopy_generator) override; //! Maximum width of leaves. Leaf width increases logarithmically from the shoot tip, so leaf_width is the width at the base of the shoot. float leaf_width; + //! Spread value for the maximum leaf width. With any new canopy or plant generation, the maximum leaf width would be between leaf_width - leaf_width_spread and leaf_width + leaf_width_spread. + float leaf_width_spread; //! Number of sub-division segments per leaf helios::int2 leaf_subdivisions; @@ -177,322 +268,246 @@ struct VSPGrapevineParameters{ //! Number of radial subdivisions for trunk/cordon/shoot tubes int wood_subdivisions; + //! Spread value for the number of wood subdivisions. With any new canopy or plant generation, the maximum number of wood subdivisions would be between wood_subdivisions - wood_subdivisions_spread and wood_subdivisions + wood_subdivisions_spread. + int wood_subdivisions_spread; + + //! Probability for a plant to be dead, i.e. without any leaves or grapes + float dead_probability; + + //! Probability for a plant to be missing + /** + * \note Only applicable when building a canopy. If you are building an individual plant, well... just don't build it. + */ + float missing_plant_probability; //! Spacing between adjacent plants along the row direction. float plant_spacing; + //! Spread value for the plant spacing. The spacing between adjacent plants along a row would vary between plant_spacing - plant_spacing_spread and plant_spacing + plant_spacing_spread. + float plant_spacing_spread; //! Spacing between plant rows. float row_spacing; + //! Spread value for the row spacing. This allows to vary the alignment of plants along a row. The spacing between two plants of adjacent rows would be between row_spacing - row_spacing_spread and row_spacing + row_spacing_spread. + float row_spacing_spread; //! Distance between the ground and top of trunks float trunk_height; + //! Spread value for the trunk height. With any new canopy or plant generation, the trunk height would be between trunk_height - trunk_height_spread and trunk_height + trunk_height_spread. + float trunk_height_spread; //! Radius of the trunk at the widest point float trunk_radius; + //! Spread value for the trunk radius. With any new canopy or plant generation, the trunk radius would be between trunk_radius - trunk_radius_spread and trunk_radius + trunk_radius_spread. + float trunk_radius_spread; + + //! Length of the cordons. By default, half the plant spacing. + float cordon_length; + //! Spread value for the cordon length. With any new canopy or plant generation, the cordon length would be between cordon_length - cordon_length_spread and cordon_length + cordon_length_spread. + float cordon_length_spread; //! Distance between the ground and cordon. Note - must be greater than or equal to the trunk height. float cordon_height; + //! Spread value for the cordon height. With any new canopy or plant generation, the cordon height would be between cordon_height - cordon_height_spread and cordon_height + cordon_height_spread. + float cordon_height_spread; //! Radius of cordon branches. float cordon_radius; - + //! Spread value for the cordon radius. With any new canopy or plant generation, the cordon radius would be between cordon_radius - cordon_radius_spread and cordon_radius + cordon_radius_spread. + float cordon_radius_spread; + //! Length of shoots. float shoot_length; + //! Spread value for the shoot length. With any new canopy or plant generation, the shoot length would be between shoot_length - shoot_length_spread and shoot_length + shoot_length_spread. + float shoot_length_spread; //! Radius of shoot branches. float shoot_radius; + //! Spread value for the shoot radius. With any new canopy or plant generation, the shoot radius would be between shoot_radius - shoot_radius_spread and shoot_radius + shoot_radius_spread. + float shoot_radius_spread; //! Number of shoots on each cordon. uint shoots_per_cordon; + //! Spread value for the number of shoots per cordon. With any new canopy or plant generation, the number of shoots per cordon would be between shoots_per_cordon - shoots_per_cordon_spread and shoots_per_cordon + shoots_per_cordon_spread. + uint shoots_per_cordon_spread; //! Spacing between adjacent leaves as a fraction of the local leaf width. E.g., leaf_spacing_fraction = 1 would give a leaf spacing equal to the leaf width. float leaf_spacing_fraction; + //! Spread value for the leaf spacing fraction. With any new canopy or plant generation, the leaf spacing fraction would be between leaf_spacing_fraction - leaf_spacing_fraction_spread and leaf_spacing_fraction + leaf_spacing_fraction_spread. + float leaf_spacing_fraction_spread; //! Number of crowns/plants in the x- and y-directions. helios::int2 plant_count; - //! Cartesian (x,y,z) coordinate of the bottom center point of the canopy (i.e., specifying z=0 places the bottom surface of the canopy at z=0). - helios::vec3 canopy_origin; - - //! Azimuthal rotation of the canopy about the canopy origin. Note that if canopy_rotation is not equal to zero, the plant_spacing and plant_count parameters are defined in the x- and y-directions before rotation. - float canopy_rotation; - //! Radius of grape berries float grape_radius; + //! Spread value for the grape radius. With any new canopy or plant generation, the grape radius would be between grape_radius - grape_radius_spread and grape_radius + grape_radius_spread. + float grape_radius_spread; //! Maximum horizontal radius of grape clusters float cluster_radius; + //! Spread value for the cluster radius. With any new canopy or plant generation, the cluster radius would be between cluster_radius - cluster_radius_spread and cluster_radius + cluster_radius_spread. + float cluster_radius_spread; //! Maximum height of grape clusters along the shoot as a fraction of the total shoot length float cluster_height_max; + //! Spread value for the cluster height. With any new canopy or plant generation, the cluster height would be between cluster_height - cluster_height_spread and cluster_height + cluster_height_spread. + float cluster_height_max_spread; //! Color of grapes helios::RGBcolor grape_color; //! Number of azimuthal and zenithal subdivisions making up berries (will result in roughly 2*(grape_subdivisions)^2 triangles per grape berry) uint grape_subdivisions; + //! Spread value for the number of grape subdivisions. With any new canopy or plant generation, the number of grape subdivisions would be between grape_subdivisions - grape_subdivisions_spread and grape_subdivisions + grape_subdivisions_spread. + uint grape_subdivisions_spread; //! std::vector leaf_angle_PDF; - + + //! Spread value for the canopy rotation. With any new canopy or plant generation, the canopy/plant rotation would be between canopy_rotation - canopy_rotation_spread and canopy_rotation + canopy_rotation_spread. + float canopy_rotation_spread; + }; -//! Parameters defining the grapevine canopy with a split (quad) trellis -struct SplitGrapevineParameters{ +//! Parameters defining the grapevine canopy with vertical shoot positioned (VSP) trellis +struct VSPGrapevineParameters : BaseGrapeVineParameters{ //! Default constructor - SplitGrapevineParameters(); + VSPGrapevineParameters(); - //! Maximum width of leaves. Leaf width increases logarithmically from the shoot tip, so leaf_width is the width at the base of the shoot. - float leaf_width; + /** + * \param[in] canopy_node XML node containing the canopy parameters + */ + VSPGrapevineParameters(const pugi::xml_node canopy_node); - //! Number of sub-division segments per leaf - helios::int2 leaf_subdivisions; + //! Sets canopy parameters from the given XML node + /** + * \param[in] canopy_node XML node containing the canopy parameters + */ + void readParametersFromXML(const pugi::xml_node canopy_node); - //! Path to texture map file for leaves. - std::string leaf_texture_file; + //! Makes the given Canopy generator build a single plant of our canopy type with our parameters at the given position + void buildPlant(CanopyGenerator& canopy_generator, helios::vec3 origin) override; - //! Path to texture map file for trunks/branches. - std::string wood_texture_file; - - //! Number of radial subdivisions for trunk/cordon/shoot tubes - int wood_subdivisions; + //! Makes the given Canopy generator build a canopy of our type with our parameters + void buildCanopy(CanopyGenerator& canopy_generator) override; - //! Spacing between adjacent plants along the row direction. - float plant_spacing; +}; - //! Spacing between plant rows. - float row_spacing; +//! Parameters defining the grapevine canopy with a split (quad) trellis +struct SplitGrapevineParameters : BaseGrapeVineParameters{ - //! Distance between the ground and top of trunks - float trunk_height; + //! Default constructor + SplitGrapevineParameters(); - //! Radius of the trunk at the widest point - float trunk_radius; + /** + * \param[in] canopy_node XML node containing the canopy parameters + */ + SplitGrapevineParameters(const pugi::xml_node canopy_node); - //! Distance between the ground and cordon. Note - must be greater than or equal to the trunk height. - float cordon_height; + //! Sets canopy parameters from the given XML node + /** + * \param[in] canopy_node XML node containing the canopy parameters + */ + void readParametersFromXML(const pugi::xml_node canopy_node); - //! Radius of cordon branches. - float cordon_radius; + //! Makes the given Canopy generator build a single plant of our canopy type with our parameters at the given position + void buildPlant(CanopyGenerator& canopy_generator, helios::vec3 origin) override; + + //! Makes the given Canopy generator build a canopy of our type with our parameters + void buildCanopy(CanopyGenerator& canopy_generator) override; //! Spacing between two opposite cordons float cordon_spacing; - - //! Length of shoots. - float shoot_length; - - //! Radius of shoot branches. - float shoot_radius; - - //! Number of shoots on each cordon. - uint shoots_per_cordon; + //! Spread value for the cordon spacing. With any new canopy or plant generation, the cordon spacing would be between cordon_spacing - cordon_spacing_spread and cordon_spacing + cordon_spacing_spread. + float cordon_spacing_spread; //! Average angle of the shoot at the base (shoot_angle_base=0 points shoots upward; shoot_angle_base=M_PI points shoots downward and makes a Geneva Double Curtain) float shoot_angle_base; + //! Spread value for the base shoot angle. With any new canopy or plant generation, the base shoot angle would be between shoot_angle_base - shoot_angle_base_spread and shoot_angle_base + shoot_angle_base_spread. + float shoot_angle_base_spread; //! Average angle of the shoot at the tip (shoot_angle=0 is a completely vertical shoot; shoot_angle=M_PI is a downward-pointing shoot) float shoot_angle_tip; - - //! Spacing between adjacent leaves as a fraction of the local leaf width. E.g., leaf_spacing_fraction = 1 would give a leaf spacing equal to the leaf width. - float leaf_spacing_fraction; - - //! Number of crowns/plants in the x- and y-directions. - helios::int2 plant_count; - - //! Cartesian (x,y,z) coordinate of the bottom center point of the canopy (i.e., specifying z=0 places the bottom surface of the canopy at z=0). - helios::vec3 canopy_origin; - - //! Azimuthal rotation of the canopy about the canopy origin. Note that if canopy_rotation is not equal to zero, the plant_spacing and plant_count parameters are defined in the x- and y-directions before rotation. - float canopy_rotation; - - //! Radius of grape berries - float grape_radius; - - //! Maximum horizontal radius of grape clusters - float cluster_radius; - - //! Maximum height of grape clusters along the shoot as a fraction of the total shoot length - float cluster_height_max; - - //! Color of grapes - helios::RGBcolor grape_color; - - //! Number of azimuthal and zenithal subdivisions making up berries (will result in roughly grape_subdivisions^2 triangles per grape berry) - uint grape_subdivisions; - - //! - std::vector leaf_angle_PDF; + //! Spread value for the base shoot angle. With any new canopy or plant generation, the base shoot angle would be between shoot_angle_tip - shoot_angle_tip_spread and shoot_angle_tip + shoot_angle_tip_spread. + float shoot_angle_tip_spread; }; //! Parameters defining the grapevine canopy with unilateral trellis -struct UnilateralGrapevineParameters{ +struct UnilateralGrapevineParameters : BaseGrapeVineParameters{ //! Default constructor UnilateralGrapevineParameters(); - //! Maximum width of leaves. Leaf width increases logarithmically from the shoot tip, so leaf_width is the width at the base of the shoot. - float leaf_width; - - //! Number of sub-division segments per leaf - helios::int2 leaf_subdivisions; - - //! Path to texture map file for leaves. - std::string leaf_texture_file; - - //! Path to texture map file for trunks/branches. - std::string wood_texture_file; - - //! Number of radial subdivisions for trunk/cordon/shoot tubes - int wood_subdivisions; - - //! Spacing between adjacent plants along the row direction. - float plant_spacing; - - //! Spacing between plant rows. - float row_spacing; - - //! Distance between the ground and top of trunks - float trunk_height; - - //! Radius of the trunk at the widest point - float trunk_radius; - - //! Distance between the ground and cordon. Note - must be greater than or equal to the trunk height. - float cordon_height; - - //! Radius of cordon branches. - float cordon_radius; - - //! Length of shoots. - float shoot_length; - - //! Radius of shoot branches. - float shoot_radius; - - //! Number of shoots on each cordon. - uint shoots_per_cordon; - - //! Spacing between adjacent leaves as a fraction of the local leaf width. E.g., leaf_spacing_fraction = 1 would give a leaf spacing equal to the leaf width. - float leaf_spacing_fraction; - - //! Number of crowns/plants in the x- and y-directions. - helios::int2 plant_count; - - //! Cartesian (x,y,z) coordinate of the bottom center point of the canopy (i.e., specifying z=0 places the bottom surface of the canopy at z=0). - helios::vec3 canopy_origin; - - //! Azimuthal rotation of the canopy about the canopy origin. Note that if canopy_rotation is not equal to zero, the plant_spacing and plant_count parameters are defined in the x- and y-directions before rotation. - float canopy_rotation; - - //! Radius of grape berries - float grape_radius; - - //! Maximum horizontal radius of grape clusters - float cluster_radius; - - //! Maximum height of grape clusters along the shoot as a fraction of the total shoot length - float cluster_height_max; + /** + * \param[in] canopy_node XML node containing the canopy parameters + */ + UnilateralGrapevineParameters(const pugi::xml_node canopy_node); - //! Color of grapes - helios::RGBcolor grape_color; + //! Sets canopy parameters from the given XML node + /** + * \param[in] canopy_node XML node containing the canopy parameters + */ + void readParametersFromXML(const pugi::xml_node canopy_node); - //! Number of azimuthal and zenithal subdivisions making up berries (will result in roughly grape_subdivisions^2 triangles per grape berry) - uint grape_subdivisions; + //! Makes the given Canopy generator build a single plant of our canopy type with our parameters at the given position + void buildPlant(CanopyGenerator& canopy_generator, helios::vec3 origin) override; - //! - std::vector leaf_angle_PDF; + //! Makes the given Canopy generator build a canopy of our type with our parameters + void buildCanopy(CanopyGenerator& canopy_generator) override; }; //! Parameters defining the grapevine canopy with goblet (vent a taille) trellis -struct GobletGrapevineParameters{ +struct GobletGrapevineParameters : BaseGrapeVineParameters{ //! Default constructor GobletGrapevineParameters(); - //! Maximum width of leaves. Leaf width increases logarithmically from the shoot tip, so leaf_width is the width at the base of the shoot. - float leaf_width; - - //! Number of sub-division segments per leaf - helios::int2 leaf_subdivisions; - - //! Path to texture map file for leaves. - std::string leaf_texture_file; - - //! Path to texture map file for trunks/branches. - std::string wood_texture_file; - - //! Number of radial subdivisions for trunk/cordon/shoot tubes - int wood_subdivisions; - - //! Spacing between adjacent plants along the row direction. - float plant_spacing; - - //! Spacing between plant rows. - float row_spacing; - - //! Distance between the ground and top of trunks - float trunk_height; - - //! Radius of the trunk at the widest point - float trunk_radius; - - //! Distance between the ground and cordon. Note - must be greater than or equal to the trunk height. - float cordon_height; - - //! Radius of cordon branches. - float cordon_radius; - - //! Length of shoots. - float shoot_length; - - //! Radius of shoot branches. - float shoot_radius; - - //! Number of shoots on each cordon. - uint shoots_per_cordon; - - //! Spacing between adjacent leaves as a fraction of the local leaf width. E.g., leaf_spacing_fraction = 1 would give a leaf spacing equal to the leaf width. - float leaf_spacing_fraction; - - //! Number of crowns/plants in the x- and y-directions. - helios::int2 plant_count; - - //! Cartesian (x,y,z) coordinate of the bottom center point of the canopy (i.e., specifying z=0 places the bottom surface of the canopy at z=0). - helios::vec3 canopy_origin; - - //! Azimuthal rotation of the canopy about the canopy origin. Note that if canopy_rotation is not equal to zero, the plant_spacing and plant_count parameters are defined in the x- and y-directions before rotation. - float canopy_rotation; - - //! Radius of grape berries - float grape_radius; - - //! Maximum horizontal radius of grape clusters - float cluster_radius; - - //! Maximum height of grape clusters along the shoot as a fraction of the total shoot length - float cluster_height_max; + /** + * \param[in] canopy_node XML node containing the canopy parameters + */ + GobletGrapevineParameters(const pugi::xml_node canopy_node); - //! Color of grapes - helios::RGBcolor grape_color; + //! Sets canopy parameters from the given XML node + /** + * \param[in] canopy_node XML node containing the canopy parameters + */ + void readParametersFromXML(const pugi::xml_node canopy_node); - //! Number of azimuthal and zenithal subdivisions making up berries (will result in roughly grape_subdivisions^2 triangles per grape berry) - uint grape_subdivisions; + //! Makes the given Canopy generator build a single plant of our canopy type with our parameters at the given position + void buildPlant(CanopyGenerator& canopy_generator, helios::vec3 origin) override; - //! - std::vector leaf_angle_PDF; + //! Makes the given Canopy generator build a canopy of our type with our parameters + void buildCanopy(CanopyGenerator& canopy_generator) override; }; //! Parameters defining the white spruce -struct WhiteSpruceCanopyParameters{ +struct WhiteSpruceCanopyParameters : BaseCanopyParameters{ //! Default constructor WhiteSpruceCanopyParameters(); + /** + * \param[in] canopy_node XML node containing the canopy parameters + */ + WhiteSpruceCanopyParameters(const pugi::xml_node canopy_node); + + //! Sets canopy parameters from the given XML node + /** + * \param[in] canopy_node XML node containing the canopy parameters + */ + void readParametersFromXML(const pugi::xml_node canopy_node); + + //! Makes the given Canopy generator build a single plant of our canopy type with our parameters at the given position + void buildPlant(CanopyGenerator& canopy_generator, helios::vec3 origin) override; + + //! Makes the given Canopy generator build a canopy of our type with our parameters + void buildCanopy(CanopyGenerator& canopy_generator) override; + //! Width of needles float needle_width; @@ -543,21 +558,32 @@ struct WhiteSpruceCanopyParameters{ //! Number of crowns/plants in the x- and y-directions. helios::int2 plant_count; - - //! Cartesian (x,y,z) coordinate of the bottom center point of the canopy (i.e., specifying z=0 places the bottom surface of the canopy at z=0). - helios::vec3 canopy_origin; - - //! Azimuthal rotation of the canopy about the canopy origin. Note that if canopy_rotation is not equal to zero, the plant_spacing and plant_count parameters are defined in the x- and y-directions before rotation. - float canopy_rotation; }; //! Parameters defining the tomato plant canopy -struct TomatoParameters{ +struct TomatoParameters : BaseCanopyParameters{ //! Default constructor TomatoParameters(); + /** + * \param[in] canopy_node XML node containing the canopy parameters + */ + TomatoParameters(const pugi::xml_node canopy_node); + + //! Sets canopy parameters from the given XML node + /** + * \param[in] canopy_node XML node containing the canopy parameters + */ + void readParametersFromXML(const pugi::xml_node canopy_node); + + //! Makes the given Canopy generator build a single plant of our canopy type with our parameters at the given position + void buildPlant(CanopyGenerator& canopy_generator, helios::vec3 origin) override; + + //! Makes the given Canopy generator build a canopy of our type with our parameters + void buildCanopy(CanopyGenerator& canopy_generator) override; + //! Maximum width of leaves. float leaf_length; @@ -585,12 +611,6 @@ struct TomatoParameters{ //! Number of crowns/plants in the x- and y-directions. helios::int2 plant_count; - //! Cartesian (x,y,z) coordinate of the bottom center point of the canopy (i.e., specifying z=0 places the bottom surface of the canopy at z=0). - helios::vec3 canopy_origin; - - //! Azimuthal rotation of the canopy about the canopy origin. Note that if canopy_rotation is not equal to zero, the plant_spacing and plant_count parameters are defined in the x- and y-directions before rotation. - float canopy_rotation; - //! Radius of tomato fruit float fruit_radius; @@ -603,11 +623,28 @@ struct TomatoParameters{ }; //! Parameters defining the strawberry plant canopy -struct StrawberryParameters{ +struct StrawberryParameters : BaseCanopyParameters{ //! Default constructor StrawberryParameters(); + /** + * \param[in] canopy_node XML node containing the canopy parameters + */ + StrawberryParameters(const pugi::xml_node canopy_node); + + //! Sets canopy parameters from the given XML node + /** + * \param[in] canopy_node XML node containing the canopy parameters + */ + void readParametersFromXML(const pugi::xml_node canopy_node); + + //! Makes the given Canopy generator build a single plant of our canopy type with our parameters at the given position + void buildPlant(CanopyGenerator& canopy_generator, helios::vec3 origin) override; + + //! Makes the given Canopy generator build a canopy of our type with our parameters + void buildCanopy(CanopyGenerator& canopy_generator) override; + //! Maximum width of leaves. float leaf_length; @@ -641,12 +678,6 @@ struct StrawberryParameters{ //! Number of crowns/plants in the x- and y-directions. helios::int2 plant_count; - //! Cartesian (x,y,z) coordinate of the bottom center point of the canopy (i.e., specifying z=0 places the bottom surface of the canopy at z=0). - helios::vec3 canopy_origin; - - //! Azimuthal rotation of the canopy about the canopy origin. Note that if canopy_rotation is not equal to zero, the plant_spacing and plant_count parameters are defined in the x- and y-directions before rotation. - float canopy_rotation; - //! Radius of strawberry fruit float fruit_radius; @@ -662,11 +693,28 @@ struct StrawberryParameters{ }; //! Parameters defining the walnut tree canopy -struct WalnutCanopyParameters{ +struct WalnutCanopyParameters : BaseCanopyParameters{ //! Default constructor WalnutCanopyParameters(); + /** + * \param[in] canopy_node XML node containing the canopy parameters + */ + WalnutCanopyParameters(const pugi::xml_node canopy_node); + + //! Sets canopy parameters from the given XML node + /** + * \param[in] canopy_node XML node containing the canopy parameters + */ + void readParametersFromXML(const pugi::xml_node canopy_node); + + //! Makes the given Canopy generator build a single plant of our canopy type with our parameters at the given position + void buildPlant(CanopyGenerator& canopy_generator, helios::vec3 origin) override; + + //! Makes the given Canopy generator build a canopy of our type with our parameters + void buildCanopy(CanopyGenerator& canopy_generator) override; + //! Maximum length of leaves along midrib. float leaf_length; @@ -709,21 +757,32 @@ struct WalnutCanopyParameters{ //! Number of crowns/plants in the x- and y-directions. helios::int2 plant_count; - - //! Cartesian (x,y,z) coordinate of the bottom center point of the canopy (i.e., specifying z=0 places the bottom surface of the canopy at z=0). - helios::vec3 canopy_origin; - - //! Azimuthal rotation of the canopy about the canopy origin. Note that if canopy_rotation is not equal to zero, the plant_spacing and plant_count parameters are defined in the x- and y-directions before rotation. - float canopy_rotation; }; //! Parameters defining Sorghum plant canopy -struct SorghumCanopyParameters{ +struct SorghumCanopyParameters : BaseCanopyParameters{ //! Default constructor SorghumCanopyParameters(); +/** + * \param[in] canopy_node XML node containing the canopy parameters + */ + SorghumCanopyParameters(const pugi::xml_node canopy_node); + +//! Sets canopy parameters from the given XML node +/** + * \param[in] canopy_node XML node containing the canopy parameters + */ + void readParametersFromXML(const pugi::xml_node canopy_node); + +//! Makes the given Canopy generator build a single plant of our canopy type with our parameters at the given position + void buildPlant(CanopyGenerator& canopy_generator, helios::vec3 origin) override; + +//! Makes the given Canopy generator build a canopy of our type with our parameters + void buildCanopy(CanopyGenerator& canopy_generator) override; + //! Sorghum categorized into 5 stages; 1 - Three leaf stage, 2 - Five leaf stage, 3 - Panicle initiation and flag leaf emergency, 4 - Booting, and flowering, 5 - Maturity; Input of a value other than 1-5 will output stage 5 int sorghum_stage; @@ -918,17 +977,31 @@ struct SorghumCanopyParameters{ //! Number of crowns/plants in the x- and y-directions. helios::int2 plant_count; -//! Cartesian (x,y,z) coordinate of the bottom center point of the canopy (i.e., specifying z=0 places the bottom surface of the canopy at z=0. - helios::vec3 canopy_origin; - }; //! Parameters defining the bean plant canopy -struct BeanParameters{ +struct BeanParameters : BaseCanopyParameters{ //! Default constructor BeanParameters(); + /** + * \param[in] canopy_node XML node containing the canopy parameters + */ + BeanParameters(const pugi::xml_node canopy_node); + + //! Sets canopy parameters from the given XML node + /** + * \param[in] canopy_node XML node containing the canopy parameters + */ + void readParametersFromXML(const pugi::xml_node canopy_node); + + //! Makes the given Canopy generator build a single plant of our canopy type with our parameters at the given position + void buildPlant(CanopyGenerator& canopy_generator, helios::vec3 origin) override; + + //! Makes the given Canopy generator build a canopy of our type with our parameters + void buildCanopy(CanopyGenerator& canopy_generator) override; + //! Maximum width of leaves. float leaf_length; @@ -965,12 +1038,6 @@ struct BeanParameters{ //! Probability that a plant in the canopy germinated float germination_probability; - //! Cartesian (x,y,z) coordinate of the bottom center point of the canopy (i.e., specifying z=0 places the bottom surface of the canopy at z=0). - helios::vec3 canopy_origin; - - //! Azimuthal rotation of the canopy about the canopy origin. Note that if canopy_rotation is not equal to zero, the plant_spacing and plant_count parameters are defined in the x- and y-directions before rotation. - float canopy_rotation; - //! Length of bean pods float pod_length; @@ -994,11 +1061,21 @@ class CanopyGenerator{ //! Unit testing routine int selfTest(); - //! Build canopy geometries based on parameters specified in an XML file + //! Stores the given canopy parameters + template + void storeCanopyParameters(Args&&... args); + + std::vector> getCanopyParametersList(); + + //! Reads the XML file of the given name and stores all the configured canopy parameters /** * \param[in] filename Path to XML file to be read + * \param[in] build true if we should build all the canopies for which we read parameters in the XML file */ - void loadXML( const char* filename ); + void loadXML( const char* filename, bool build = true ); + + //! Builds canopies for all the stored canopy parameters + void buildCanopies(); //! Build a canopy consisting of a homogeneous volume of leaves /** @@ -1164,6 +1241,15 @@ class CanopyGenerator{ //---------- PLANT GEOMETRIES ------------ // + //! Builds individual plants based on the stored canopy parameters, at the given position + /** + * \note If you have multiple canopy parameters stored, this will try to build an individual plant of each type at the same position + */ + void buildIndividualPlants(helios::vec3 position); + + //! Builds individual plants based on the stored canopy parameters (using canopy_origin as the position) + void buildIndividualPlants(); + //! Function to add an individual grape berry cluster /** * \param[in] position Cartesian (x,y,z) position of the cluster main stem. @@ -1264,6 +1350,9 @@ uint grapevineGoblet( const GobletGrapevineParameters ¶ms, const helios::vec helios::Context* context; + //! List of stored canopy parameters, which can then be used to build individual plants or whole canopies + std::vector> canopy_parameters_list; + //! UUIDs for trunk primitives /** * \note First index in the vector is the plant, second index is the UUIDs making up the trunk for that plant. diff --git a/plugins/canopygenerator/src/CanopyGenerator.cpp b/plugins/canopygenerator/src/CanopyGenerator.cpp index a7812aab6..ec1ce0a35 100644 --- a/plugins/canopygenerator/src/CanopyGenerator.cpp +++ b/plugins/canopygenerator/src/CanopyGenerator.cpp @@ -18,7 +18,37 @@ using namespace helios; -HomogeneousCanopyParameters::HomogeneousCanopyParameters(){ +//! Float null value in XML parameters +static float nullvalue_f = 99999; +//! Int null value in XML parameters +static int nullvalue_i = 99999; +//! String null value in XML parameters +static std::string nullvalue_s = "99999"; + +BaseCanopyParameters::BaseCanopyParameters(){ + canopy_origin = make_vec3(0,0,0); + canopy_rotation = 0; +} + +BaseCanopyParameters::BaseCanopyParameters(const pugi::xml_node canopy_node) : BaseCanopyParameters(){ + readParametersFromXML(canopy_node); +} + +void BaseCanopyParameters::readParametersFromXML(const pugi::xml_node canopy_node){ + // ----- canopy origin ------ // + vec3 new_canopy_origin = XMLloadvec3(canopy_node, "canopy_origin"); + if (new_canopy_origin.x != nullvalue_f && new_canopy_origin.y != nullvalue_f) { + canopy_origin = new_canopy_origin; + } + + // ----- canopy rotation ------ // + float new_canopy_rotation = XMLloadfloat(canopy_node, "canopy_rotation"); + if (new_canopy_rotation != nullvalue_f) { + canopy_rotation = new_canopy_rotation; + } +} + +HomogeneousCanopyParameters::HomogeneousCanopyParameters() : BaseCanopyParameters(){ leaf_size = make_vec2(0.1,0.1); @@ -34,13 +64,75 @@ HomogeneousCanopyParameters::HomogeneousCanopyParameters(){ canopy_extent = make_vec2(5,5); - canopy_origin = make_vec3(0,0,0); - buffer = "z"; } -SphericalCrownsCanopyParameters::SphericalCrownsCanopyParameters(){ +HomogeneousCanopyParameters::HomogeneousCanopyParameters(const pugi::xml_node canopy_node) : HomogeneousCanopyParameters(){ + readParametersFromXML(canopy_node); +} + +void HomogeneousCanopyParameters::readParametersFromXML(const pugi::xml_node canopy_node){ + BaseCanopyParameters::readParametersFromXML(canopy_node); + + // ----- leaf size ------// + vec2 new_leaf_size = XMLloadvec2(canopy_node, "leaf_size"); + if (new_leaf_size.x != nullvalue_f && new_leaf_size.y != nullvalue_f) { + leaf_size = new_leaf_size; + } + + // ----- leaf subdivisions ------// + int2 new_leaf_subdivisions = XMLloadint2(canopy_node, "leaf_subdivisions"); + if (new_leaf_subdivisions.x != nullvalue_i && new_leaf_subdivisions.y != nullvalue_i) { + leaf_subdivisions = new_leaf_subdivisions; + } + + // ----- leaf color ------// + RGBAcolor new_leaf_color = XMLloadrgba(canopy_node, "leaf_color"); + if (new_leaf_color.a != 0) { + leaf_color = make_RGBcolor(new_leaf_color.r, new_leaf_color.g, new_leaf_color.b); + } + + // ----- leaf texture file ------// + std::string new_leaf_texture_file = XMLloadstring(canopy_node, "leaf_texture_file"); + if (new_leaf_texture_file != nullvalue_s) { + leaf_texture_file = new_leaf_texture_file; + } + + // ----- leaf area index ------// + float LAI = XMLloadfloat(canopy_node, "leaf_area_index"); + if (LAI != nullvalue_f) { + leaf_area_index = LAI; + } + + // ----- canopy height ------// + float h = XMLloadfloat(canopy_node, "canopy_height"); + if (h != nullvalue_f) { + canopy_height = h; + } + + // ----- canopy extent ------// + vec2 new_canopy_extent = XMLloadvec2(canopy_node, "canopy_extent"); + if (new_canopy_extent.x != nullvalue_f && new_canopy_extent.y != nullvalue_f) { + canopy_extent = new_canopy_extent; + } + + // ----- buffer ------// + std::string new_buffer = XMLloadstring(canopy_node, "buffer"); + if ( new_buffer != nullvalue_s ) { + buffer = new_buffer; + } +} + +void HomogeneousCanopyParameters::buildPlant(CanopyGenerator& canopy_generator, helios::vec3 origin){ + std::cout << "HomogeneousCanopyParameters::buildPlant: Cannot build a single plant of canopy type HomogeneousCanopyParameters" << std::endl; +} + +void HomogeneousCanopyParameters::buildCanopy(CanopyGenerator& canopy_generator){ + canopy_generator.buildCanopy(*this); +} + +SphericalCrownsCanopyParameters::SphericalCrownsCanopyParameters() : BaseCanopyParameters(){ leaf_size = make_vec2(0.025,0.025); @@ -60,13 +152,85 @@ SphericalCrownsCanopyParameters::SphericalCrownsCanopyParameters(){ plant_count = make_int2(5,5); - canopy_origin = make_vec3(0,0,0); +} + +SphericalCrownsCanopyParameters::SphericalCrownsCanopyParameters(const pugi::xml_node canopy_node) : SphericalCrownsCanopyParameters(){ + readParametersFromXML(canopy_node); +} + +void SphericalCrownsCanopyParameters::readParametersFromXML(const pugi::xml_node canopy_node){ + BaseCanopyParameters::readParametersFromXML(canopy_node); + + // ----- leaf size ------// + vec2 new_leaf_size = XMLloadvec2(canopy_node, "leaf_size"); + if (new_leaf_size.x != nullvalue_f && new_leaf_size.y != nullvalue_f) { + leaf_size = new_leaf_size; + } + + // ----- leaf subdivisions ------// + int2 new_leaf_subdivisions = XMLloadint2(canopy_node, "leaf_subdivisions"); + if (new_leaf_subdivisions.x != nullvalue_i && new_leaf_subdivisions.y != nullvalue_i) { + leaf_subdivisions = new_leaf_subdivisions; + } + + // ----- leaf color ------// + RGBAcolor new_leaf_color = XMLloadrgba(canopy_node, "leaf_color"); + if (new_leaf_color.a != 0) { + leaf_color = make_RGBcolor(new_leaf_color.r, new_leaf_color.g, new_leaf_color.b); + } - canopy_rotation = 0.f; + // ----- leaf texture file ------// + std::string new_leaf_texture_file = XMLloadstring(canopy_node, "leaf_texture_file"); + if (new_leaf_texture_file != nullvalue_s) { + leaf_texture_file = new_leaf_texture_file; + } + + // ----- leaf angle distribution ------// + std::string new_leaf_angle_distribution = XMLloadstring(canopy_node, "leaf_angle_distribution"); + if (new_leaf_angle_distribution != nullvalue_s) { + leaf_angle_distribution = new_leaf_angle_distribution; + } + + // ----- leaf area density ------// + float new_leaf_area_density = XMLloadfloat(canopy_node, "leaf_area_density"); + if (new_leaf_area_density != nullvalue_f) { + leaf_area_density = new_leaf_area_density; + } + + // ----- crown radius ------// + vec3 new_crown_radius = XMLloadvec3(canopy_node, "crown_radius"); + if (new_crown_radius.x != nullvalue_f && new_crown_radius.y != nullvalue_f) { + crown_radius = new_crown_radius; + } + + // ----- canopy configuration ------// + std::string new_canopy_configuration = XMLloadstring(canopy_node, "canopy_configuration"); + if (new_canopy_configuration != nullvalue_s) { + canopy_configuration = new_canopy_configuration; + } + + // ----- plant spacing ------// + vec2 new_plant_spacing = XMLloadvec2(canopy_node, "plant_spacing"); + if (new_plant_spacing.x != nullvalue_f && new_plant_spacing.y != nullvalue_f) { + plant_spacing = new_plant_spacing; + } + + // ----- plant count ------// + int2 new_plant_count = XMLloadint2(canopy_node, "plant_count"); + if (new_plant_count.x != nullvalue_i && new_plant_count.y != nullvalue_i) { + plant_count = new_plant_count; + } +} + +void SphericalCrownsCanopyParameters::buildPlant(CanopyGenerator& canopy_generator, helios::vec3 origin){ + std::cout << "SphericalCrownsCanopyParameters::buildPlant: Cannot build a single plant of canopy type SphericalCrownsCanopyParameters" << std::endl; +} +void SphericalCrownsCanopyParameters::buildCanopy(CanopyGenerator& canopy_generator){ + canopy_generator.buildCanopy(*this); } -ConicalCrownsCanopyParameters::ConicalCrownsCanopyParameters(){ +ConicalCrownsCanopyParameters::ConicalCrownsCanopyParameters() : BaseCanopyParameters(){ leaf_size = make_vec2(0.025,0.025); @@ -88,179 +252,371 @@ ConicalCrownsCanopyParameters::ConicalCrownsCanopyParameters(){ plant_count = make_int2(5,5); - canopy_origin = make_vec3(0,0,0); - - canopy_rotation = 0.f; +} +ConicalCrownsCanopyParameters::ConicalCrownsCanopyParameters(const pugi::xml_node canopy_node) : ConicalCrownsCanopyParameters(){ + readParametersFromXML(canopy_node); } -VSPGrapevineParameters::VSPGrapevineParameters(){ +void ConicalCrownsCanopyParameters::readParametersFromXML(const pugi::xml_node canopy_node){ + BaseCanopyParameters::readParametersFromXML(canopy_node); - leaf_width = 0.18; + // ----- leaf size ------// + vec2 new_leaf_size = XMLloadvec2(canopy_node, "leaf_size"); + if (new_leaf_size.x != nullvalue_f && new_leaf_size.y != nullvalue_f) { + leaf_size = new_leaf_size; + } - leaf_subdivisions = make_int2(1,1); + // ----- leaf subdivisions ------// + int2 new_leaf_subdivisions = XMLloadint2(canopy_node, "leaf_subdivisions"); + if (new_leaf_subdivisions.x != nullvalue_i && new_leaf_subdivisions.y != nullvalue_i) { + leaf_subdivisions = new_leaf_subdivisions; + } - leaf_texture_file = "plugins/canopygenerator/textures/GrapeLeaf.png"; + // ----- leaf color ------// + RGBAcolor new_leaf_color = XMLloadrgba(canopy_node, "leaf_color"); + if (new_leaf_color.a != 0) { + leaf_color = make_RGBcolor(new_leaf_color.r, new_leaf_color.g, new_leaf_color.b); + } - wood_texture_file = "plugins/canopygenerator/textures/wood.jpg"; + // ----- leaf texture file ------// + std::string new_leaf_texture_file = XMLloadstring(canopy_node, "leaf_texture_file"); + if (new_leaf_texture_file != nullvalue_s) { + leaf_texture_file = new_leaf_texture_file; + } - wood_subdivisions = 10; + // ----- leaf angle distribution ------// + std::string new_leaf_angle_distribution = XMLloadstring(canopy_node, "leaf_angle_distribution"); + if (new_leaf_angle_distribution != nullvalue_s) { + leaf_angle_distribution = new_leaf_angle_distribution; + } - trunk_height = 0.7; + // ----- leaf area density ------// + float new_leaf_area_density = XMLloadfloat(canopy_node, "leaf_area_density"); + if (new_leaf_area_density != nullvalue_f) { + leaf_area_density = new_leaf_area_density; + } - trunk_radius = 0.05; + // ----- crown radius ------// + float new_crown_radius = XMLloadfloat(canopy_node, "crown_radius"); + if (new_crown_radius != nullvalue_f) { + crown_radius = new_crown_radius; + } - cordon_height = 0.9; + // ----- crown height ------// + float new_crown_height = XMLloadfloat(canopy_node, "crown_height"); + if (new_crown_height != nullvalue_f) { + crown_height = new_crown_height; + } - cordon_radius = 0.02; + // ----- canopy configuration ------// + std::string new_canopy_configuration = XMLloadstring(canopy_node, "canopy_configuration"); + if (new_canopy_configuration != nullvalue_s) { + canopy_configuration = new_canopy_configuration; + } - shoot_length = 0.9; + // ----- plant spacing ------// + vec2 new_plant_spacing = XMLloadvec2(canopy_node, "plant_spacing"); + if (new_plant_spacing.x != nullvalue_f && new_plant_spacing.y != nullvalue_f) { + plant_spacing = new_plant_spacing; + } - shoot_radius = 0.005; + // ----- plant count ------// + int2 new_plant_count = XMLloadint2(canopy_node, "plant_count"); + if (new_plant_count.x != nullvalue_i && new_plant_count.y != nullvalue_i) { + plant_count = new_plant_count; + } +} - shoots_per_cordon = 10; +void ConicalCrownsCanopyParameters::buildPlant(CanopyGenerator& canopy_generator, helios::vec3 origin){ + std::cout << "ConicalCrownsCanopyParameters::buildPlant: Cannot build a single plant of canopy type ConicalCrownsCanopyParameters" << std::endl; +} - leaf_spacing_fraction = 0.5; +void ConicalCrownsCanopyParameters::buildCanopy(CanopyGenerator& canopy_generator){ + canopy_generator.buildCanopy(*this); +} - grape_radius = 0.0075; +BaseGrapeVineParameters::BaseGrapeVineParameters() : BaseCanopyParameters(){ - cluster_radius = 0.03; + leaf_texture_file = "plugins/canopygenerator/textures/GrapeLeaf.png"; - cluster_height_max = 0.15; + wood_texture_file = "plugins/canopygenerator/textures/wood.jpg"; - grape_color = make_RGBcolor(0.18,0.2,0.25); + leaf_width = 0.18; + leaf_width_spread = 0; - grape_subdivisions = 8; + leaf_subdivisions = make_int2(1,1); - plant_spacing = 2; + leaf_spacing_fraction_spread = 0; - row_spacing = 2; + wood_subdivisions = 10; + wood_subdivisions_spread = 0; - plant_count = make_int2(3,3); + trunk_height_spread = 0; - canopy_origin = make_vec3(0,0,0); + cordon_length_spread = 0; + cordon_height_spread = 0; + cordon_radius_spread = 0; - canopy_rotation = 0; + shoot_length_spread = 0; + shoot_radius_spread = 0; + shoots_per_cordon_spread = 0; -} + grape_color = make_RGBcolor(0.18,0.2,0.25); -SplitGrapevineParameters::SplitGrapevineParameters(){ + grape_radius_spread = 0; - leaf_width = 0.18; + cluster_radius_spread = 0; + cluster_height_max_spread = 0; - leaf_subdivisions = make_int2(1,1); + grape_subdivisions_spread = 0; - leaf_texture_file = "plugins/canopygenerator/textures/GrapeLeaf.png"; + plant_count = make_int2(3,3); - wood_texture_file = "plugins/canopygenerator/textures/wood.jpg"; + canopy_rotation_spread = 0; - wood_subdivisions = 10; + plant_spacing_spread = 0; - trunk_height = 1.3; + row_spacing_spread = 0; - trunk_radius = 0.05; + dead_probability = 0; + missing_plant_probability = 0; - cordon_height = 1.5; +} - cordon_radius = 0.02; +BaseGrapeVineParameters::BaseGrapeVineParameters(const pugi::xml_node canopy_node) : BaseGrapeVineParameters(){ + readParametersFromXML(canopy_node); +} - cordon_spacing = 1.f; +void BaseGrapeVineParameters::readParametersFromXML(const pugi::xml_node canopy_node){ + BaseCanopyParameters::readParametersFromXML(canopy_node); - shoot_length = 1.2; + float new_leaf_width = XMLloadfloat(canopy_node, "leaf_width"); + if (new_leaf_width != nullvalue_f) { + leaf_width = new_leaf_width; + } - shoot_radius = 0.0025; + float new_leaf_width_spread = XMLloadfloat(canopy_node, "leaf_width_spread"); + if (new_leaf_width_spread != nullvalue_f) { + leaf_width_spread = new_leaf_width_spread; + } - shoots_per_cordon = 10; + int2 new_leaf_subdivisions = XMLloadint2(canopy_node, "leaf_subdivisions"); + if (new_leaf_subdivisions.x != nullvalue_i && new_leaf_subdivisions.y != nullvalue_i) { + leaf_subdivisions = new_leaf_subdivisions; + } - shoot_angle_tip = 0.4*M_PI; + std::string new_leaf_texture_file = XMLloadstring(canopy_node, "leaf_texture_file"); + if ( new_leaf_texture_file != nullvalue_s ) { + leaf_texture_file = new_leaf_texture_file; + } - shoot_angle_base = 0.; + std::string new_wood_texture_file = XMLloadstring(canopy_node, "wood_texture_file"); + if ( new_wood_texture_file != nullvalue_s ) { + wood_texture_file = new_wood_texture_file; + } - leaf_spacing_fraction = 0.6; + int new_wood_subdivisions = XMLloadint(canopy_node, "wood_subdivisions"); + if ( new_wood_subdivisions != nullvalue_i) { + wood_subdivisions = new_wood_subdivisions; + } - grape_radius = 0.0075; + int new_wood_subdivisions_spread = XMLloadint(canopy_node, "wood_subdivisions_spread"); + if ( new_wood_subdivisions_spread != nullvalue_i) { + wood_subdivisions_spread = new_wood_subdivisions_spread; + } - cluster_radius = 0.03; + float h = XMLloadfloat(canopy_node, "trunk_height"); + if (h != nullvalue_f) { + trunk_height = h; + } - cluster_height_max = 0.1; + float new_trunk_height_spread = XMLloadfloat(canopy_node, "trunk_height_spread"); + if (new_trunk_height_spread != nullvalue_f) { + trunk_height_spread = new_trunk_height_spread; + } - grape_color = make_RGBcolor(0.18,0.2,0.25); + float r = XMLloadfloat(canopy_node, "trunk_radius"); + if (r != nullvalue_f) { + trunk_radius = r; + } - grape_subdivisions = 8; + float new_trunk_radius_spread = XMLloadfloat(canopy_node, "trunk_radius_spread"); + if (new_trunk_radius_spread != nullvalue_f) { + trunk_radius_spread = new_trunk_radius_spread; + } - plant_spacing = 2; + float new_cordon_length = XMLloadfloat(canopy_node, "cordon_length"); + if (new_cordon_length != nullvalue_f) { + cordon_length = new_cordon_length; + } - row_spacing = 4; + float new_cordon_length_spread = XMLloadfloat(canopy_node, "cordon_length_spread"); + if (new_cordon_length_spread != nullvalue_f) { + cordon_length_spread = new_cordon_length_spread; + } - plant_count = make_int2(3,3); + float ch = XMLloadfloat(canopy_node, "cordon_height"); + if (ch != nullvalue_f) { + cordon_height = ch; + } - canopy_origin = make_vec3(0,0,0); + float new_cordon_height_spread = XMLloadfloat(canopy_node, "cordon_height_spread"); + if (new_cordon_height_spread != nullvalue_f) { + cordon_height_spread = new_cordon_height_spread; + } - canopy_rotation = 0; + float cr = XMLloadfloat(canopy_node, "cordon_radius"); + if (cr != nullvalue_f) { + cordon_radius = cr; + } -} + float new_cordon_radius_spread = XMLloadfloat(canopy_node, "cordon_radius_spread"); + if (new_cordon_radius_spread != nullvalue_f) { + cordon_radius_spread = new_cordon_radius_spread; + } -UnilateralGrapevineParameters::UnilateralGrapevineParameters(){ + float sl = XMLloadfloat(canopy_node, "shoot_length"); + if (sl != nullvalue_f) { + shoot_length = sl; + } - leaf_width = 0.18; + float new_shoot_length_spread = XMLloadfloat(canopy_node, "shoot_length_spread"); + if (new_shoot_length_spread != nullvalue_f) { + shoot_length_spread = new_shoot_length_spread; + } - leaf_subdivisions = make_int2(1,1); + float sr = XMLloadfloat(canopy_node, "shoot_radius"); + if (sr != nullvalue_f) { + shoot_radius = sr; + } - leaf_texture_file = "plugins/canopygenerator/textures/GrapeLeaf.png"; + float new_shoot_radius_spread = XMLloadfloat(canopy_node, "shoot_radius_spread"); + if (new_shoot_radius_spread != nullvalue_f) { + shoot_radius_spread = new_shoot_radius_spread; + } - wood_texture_file = "plugins/canopygenerator/textures/wood.jpg"; + int spc = XMLloadint(canopy_node, "shoots_per_cordon"); + if (spc != nullvalue_i) { + shoots_per_cordon = uint(spc); + } - wood_subdivisions = 10; + int new_shoots_per_cordon_spread = XMLloadint(canopy_node, "shoots_per_cordon_spread"); + if (new_shoots_per_cordon_spread != nullvalue_i) { + shoots_per_cordon_spread = uint(new_shoots_per_cordon_spread); + } - trunk_height = 0.7; + float lsf = XMLloadfloat(canopy_node, "leaf_spacing_fraction"); + if (lsf != nullvalue_f) { + leaf_spacing_fraction = lsf; + } - trunk_radius = 0.05; + float new_leaf_spacing_fraction_spread = XMLloadfloat(canopy_node, "leaf_spacing_fraction_spread"); + if (new_leaf_spacing_fraction_spread != nullvalue_f) { + leaf_spacing_fraction_spread = new_leaf_spacing_fraction_spread; + } - cordon_height = 0.9; + float gr = XMLloadfloat(canopy_node, "grape_radius"); + if (gr != nullvalue_f) { + grape_radius = gr; + } - cordon_radius = 0.04; + float new_grape_radius_spread = XMLloadfloat(canopy_node, "grape_radius_spread"); + if (new_grape_radius_spread != nullvalue_f) { + grape_radius_spread = new_grape_radius_spread; + } - shoot_length = 0.9; + float clr = XMLloadfloat(canopy_node, "cluster_radius"); + if (clr != nullvalue_f) { + cluster_radius = clr; + } - shoot_radius = 0.0025; + float new_cluster_radius_spread = XMLloadfloat(canopy_node, "cluster_radius_spread"); + if (new_cluster_radius_spread != nullvalue_f) { + cluster_radius_spread = new_cluster_radius_spread; + } - shoots_per_cordon = 20; + float clhm = XMLloadfloat(canopy_node, "cluster_height_max"); + if (clhm != nullvalue_f) { + cluster_height_max = clhm; + } - leaf_spacing_fraction = 0.6; + float new_cluster_height_max_spread = XMLloadfloat(canopy_node, "cluster_height_max_spread"); + if (new_cluster_height_max_spread != nullvalue_f) { + cluster_height_max_spread = new_cluster_height_max_spread; + } - grape_radius = 0.0075; + RGBAcolor new_grape_color = XMLloadrgba(canopy_node, "grape_color"); + if ( new_grape_color.a != 0 ) { + grape_color = make_RGBcolor(new_grape_color.r, new_grape_color.g, new_grape_color.b); + } - cluster_radius = 0.03; + int new_grape_subdivisions = XMLloadint(canopy_node, "grape_subdivisions"); + if (new_grape_subdivisions != nullvalue_i) { + grape_subdivisions = uint(new_grape_subdivisions); + } - cluster_height_max = 0.1; + int new_grape_subdivisions_spread = XMLloadint(canopy_node, "grape_subdivisions_spread"); + if (new_grape_subdivisions_spread != nullvalue_i) { + grape_subdivisions_spread = uint(new_grape_subdivisions_spread); + } - grape_color = make_RGBcolor(0.18,0.2,0.25); + float new_plant_spacing = XMLloadfloat(canopy_node, "plant_spacing"); + if (new_plant_spacing != nullvalue_f) { + plant_spacing = new_plant_spacing; + } - grape_subdivisions = 8; + float new_plant_spacing_spread = XMLloadfloat(canopy_node, "plant_spacing_spread"); + if (new_plant_spacing_spread != nullvalue_f) { + plant_spacing_spread = new_plant_spacing_spread; + } - plant_spacing = 1.5; + float new_row_spacing = XMLloadfloat(canopy_node, "row_spacing"); + if (new_row_spacing != nullvalue_f) { + row_spacing = new_row_spacing; + } - row_spacing = 2; + float new_row_spacing_spread = XMLloadfloat(canopy_node, "row_spacing_spread"); + if (new_row_spacing_spread != nullvalue_f) { + row_spacing_spread = new_row_spacing_spread; + } - plant_count = make_int2(3,3); + int2 new_plant_count = XMLloadint2(canopy_node, "plant_count"); + if (new_plant_count.x != nullvalue_i && new_plant_count.y != nullvalue_i) { + plant_count = new_plant_count; + } - canopy_origin = make_vec3(0,0,0); + float new_dead_probability = XMLloadfloat(canopy_node, "dead_probability"); + if (new_dead_probability != nullvalue_f) { + if (new_dead_probability < 0 || new_dead_probability > 1) + std::cout << "BaseGrapeVineParameters::readParametersFromXML: dead_probability value must be between 0 and 1" << std::endl; + else + dead_probability = new_dead_probability; + } - canopy_rotation = 0; + float new_missing_plant_probability = XMLloadfloat(canopy_node, "missing_plant_probability"); + if (new_missing_plant_probability != nullvalue_f) { + if (new_missing_plant_probability < 0 || new_missing_plant_probability > 1) + std::cout << "BaseGrapeVineParameters::readParametersFromXML: missing_plant_probability value must be between 0 and 1" << std::endl; + else + missing_plant_probability = new_missing_plant_probability; + } + float new_canopy_rotation_spread = XMLloadfloat(canopy_node, "canopy_rotation_spread"); + if (new_canopy_rotation_spread != nullvalue_f) { + canopy_rotation_spread = new_canopy_rotation_spread; + } } -GobletGrapevineParameters::GobletGrapevineParameters(){ - - leaf_width = 0.18; - - leaf_subdivisions = make_int2(1,1); - - leaf_texture_file = "plugins/canopygenerator/textures/GrapeLeaf.png"; +void BaseGrapeVineParameters::buildPlant(CanopyGenerator& canopy_generator, helios::vec3 origin){ + std::cout << "BaseGrapeVineParameters::buildPlant: Cannot build a single plant of canopy type BaseGrapeVineParameters" << std::endl; +} - wood_texture_file = "plugins/canopygenerator/textures/wood.jpg"; +void BaseGrapeVineParameters::buildCanopy(CanopyGenerator& canopy_generator){ + std::cout << "BaseGrapeVineParameters::buildPlant: Cannot build a canopy of type BaseGrapeVineParameters" << std::endl; +} - wood_subdivisions = 10; +VSPGrapevineParameters::VSPGrapevineParameters() : BaseGrapeVineParameters(){ trunk_height = 0.7; @@ -272,1789 +628,1614 @@ GobletGrapevineParameters::GobletGrapevineParameters(){ shoot_length = 0.9; - shoot_radius = 0.0025; + shoot_radius = 0.005; shoots_per_cordon = 10; - leaf_spacing_fraction = 0.6; + leaf_spacing_fraction = 0.5; grape_radius = 0.0075; cluster_radius = 0.03; - cluster_height_max = 0.1; - - grape_color = make_RGBcolor(0.18,0.2,0.25); + cluster_height_max = 0.15; grape_subdivisions = 8; plant_spacing = 2; + cordon_length = 0.5 * plant_spacing; + row_spacing = 2; - plant_count = make_int2(3,3); +} - canopy_origin = make_vec3(0,0,0); +VSPGrapevineParameters::VSPGrapevineParameters(const pugi::xml_node canopy_node) : VSPGrapevineParameters(){ + readParametersFromXML(canopy_node); +} - canopy_rotation = 0; +void VSPGrapevineParameters::readParametersFromXML(const pugi::xml_node canopy_node){ + BaseGrapeVineParameters::readParametersFromXML(canopy_node); +} +void VSPGrapevineParameters::buildPlant(CanopyGenerator& canopy_generator, helios::vec3 origin){ + canopy_generator.grapevineVSP(*this, origin); } -WhiteSpruceCanopyParameters::WhiteSpruceCanopyParameters(){ +void VSPGrapevineParameters::buildCanopy(CanopyGenerator& canopy_generator){ + canopy_generator.buildCanopy(*this); +} - needle_width = 0.0005; +SplitGrapevineParameters::SplitGrapevineParameters() : BaseGrapeVineParameters(){ - needle_length = 0.05; + trunk_height = 1.3; - needle_color = make_RGBcolor(0.67,0.9,0.56); + trunk_radius = 0.05; - needle_subdivisions = make_int2(1,1); + cordon_height = 1.5; - wood_texture_file = "plugins/canopygenerator/textures/wood.jpg"; + cordon_radius = 0.02; - wood_subdivisions = 10; + cordon_spacing = 1.f; + cordon_spacing_spread = 0; - trunk_height = 10; + shoot_length = 1.2; - trunk_radius = 0.15; + shoot_radius = 0.0025; - base_height = 2.0; + shoots_per_cordon = 10; - crown_radius = 0.65; + shoot_angle_tip = 0.4*M_PI; + shoot_angle_tip_spread = 0; - shoot_radius = 0.02; + shoot_angle_base = 0.; + shoot_angle_base_spread = 0; - level_spacing = 0.35; + leaf_spacing_fraction = 0.6; - branches_per_level = 8; + grape_radius = 0.0075; - shoot_angle = 0.3*M_PI; + cluster_radius = 0.03; - canopy_configuration = "random"; + cluster_height_max = 0.1; - plant_spacing = make_vec2(10,10); + grape_subdivisions = 8; - plant_count = make_int2(3,3); + plant_spacing = 2; - canopy_origin = make_vec3(0,0,0); + cordon_length = 0.5 * plant_spacing; - canopy_rotation = 0; + row_spacing = 4; } -TomatoParameters::TomatoParameters(){ +SplitGrapevineParameters::SplitGrapevineParameters(const pugi::xml_node canopy_node) : SplitGrapevineParameters(){ + readParametersFromXML(canopy_node); +} - leaf_length = 0.2; +void SplitGrapevineParameters::readParametersFromXML(const pugi::xml_node canopy_node){ + BaseGrapeVineParameters::readParametersFromXML(canopy_node); - leaf_subdivisions = make_int2(4,3); + float cs = XMLloadfloat(canopy_node, "cordon_spacing"); + if (cs != nullvalue_f) { + cordon_spacing = cs; + } - leaf_texture_file = "plugins/canopygenerator/textures/TomatoLeaf_big.png"; + float sat = XMLloadfloat( canopy_node, "shoot_angle_tip" ); + if( sat != nullvalue_f ){ + shoot_angle_tip = sat; + } - shoot_color = make_RGBcolor(0.35,0.45,0.2); + float sab = XMLloadfloat( canopy_node, "shoot_angle_base" ); + if( sab != nullvalue_f ){ + shoot_angle_base = sab; + } +} - shoot_subdivisions = 10; +void SplitGrapevineParameters::buildPlant(CanopyGenerator& canopy_generator, helios::vec3 origin){ + canopy_generator.grapevineSplit(*this, origin); +} - plant_height = 1.; +void SplitGrapevineParameters::buildCanopy(CanopyGenerator& canopy_generator){ + canopy_generator.buildCanopy(*this); +} - fruit_radius = 0.03; +UnilateralGrapevineParameters::UnilateralGrapevineParameters() : BaseGrapeVineParameters(){ - fruit_color = make_RGBcolor(0.7,0.28,0.2); + trunk_height = 0.7; - fruit_subdivisions = 8; + trunk_radius = 0.05; - plant_spacing = 2; + cordon_height = 0.9; - row_spacing = 2; + cordon_radius = 0.04; - plant_count = make_int2(3,3); + shoot_length = 0.9; - canopy_origin = make_vec3(0,0,0); + shoot_radius = 0.0025; - canopy_rotation = 0; + shoots_per_cordon = 20; -} + leaf_spacing_fraction = 0.6; -StrawberryParameters::StrawberryParameters(){ + grape_radius = 0.0075; - leaf_length = 0.1; + cluster_radius = 0.03; - leaf_subdivisions = make_int2(4,4); + cluster_height_max = 0.1; - leaf_texture_file = "plugins/canopygenerator/textures/StrawberryLeaf.png"; + grape_subdivisions = 8; - stem_color = make_RGBcolor(0.35,0.45,0.2); + plant_spacing = 1.5; - stem_subdivisions = 10; + cordon_length = 0.5 * plant_spacing; - stems_per_plant = 50; + row_spacing = 2; - stem_radius = 0.005; +} - plant_height = 0.4; +UnilateralGrapevineParameters::UnilateralGrapevineParameters(const pugi::xml_node canopy_node) : UnilateralGrapevineParameters(){ + readParametersFromXML(canopy_node); +} - fruit_radius = 0.025; +void UnilateralGrapevineParameters::readParametersFromXML(const pugi::xml_node canopy_node){ + BaseGrapeVineParameters::readParametersFromXML(canopy_node); +} - fruit_texture_file = "plugins/canopygenerator/textures/StrawberryTexture.jpg"; +void UnilateralGrapevineParameters::buildPlant(CanopyGenerator& canopy_generator, helios::vec3 origin){ + canopy_generator.grapevineUnilateral(*this, origin); +} - fruit_subdivisions = 12; +void UnilateralGrapevineParameters::buildCanopy(CanopyGenerator& canopy_generator){ + canopy_generator.buildCanopy(*this); +} - clusters_per_stem = 0.6; +GobletGrapevineParameters::GobletGrapevineParameters() : BaseGrapeVineParameters(){ - plant_spacing = 0.5; + trunk_height = 0.7; - row_spacing = 1.5; + trunk_radius = 0.05; - plant_count = make_int2(4,2); + cordon_height = 0.9; - canopy_origin = make_vec3(0,0,0); + cordon_radius = 0.02; - canopy_rotation = 0; + shoot_length = 0.9; -} + shoot_radius = 0.0025; -WalnutCanopyParameters::WalnutCanopyParameters(){ + shoots_per_cordon = 10; - leaf_length = 0.15; + leaf_spacing_fraction = 0.6; - leaf_subdivisions = make_int2(1,2); + grape_radius = 0.0075; - leaf_texture_file = "plugins/canopygenerator/textures/WalnutLeaf.png"; + cluster_radius = 0.03; - wood_texture_file = "plugins/canopygenerator/textures/wood.jpg"; + cluster_height_max = 0.1; - wood_subdivisions = 10; + grape_subdivisions = 8; - trunk_radius = 0.15; + plant_spacing = 2; - trunk_height = 4.f; + row_spacing = 2; - branch_length = make_vec3(4,0.75,0.75); +} - fruit_radius = 0.04; +GobletGrapevineParameters::GobletGrapevineParameters(const pugi::xml_node canopy_node) : GobletGrapevineParameters(){ + readParametersFromXML(canopy_node); +} - fruit_texture_file = "plugins/canopygenerator/textures/WalnutTexture.png"; +void GobletGrapevineParameters::readParametersFromXML(const pugi::xml_node canopy_node){ + BaseGrapeVineParameters::readParametersFromXML(canopy_node); +} - fruit_subdivisions = 16; +void GobletGrapevineParameters::buildPlant(CanopyGenerator& canopy_generator, helios::vec3 origin){ + canopy_generator.grapevineGoblet(*this, origin); +} - plant_spacing = 6; +void GobletGrapevineParameters::buildCanopy(CanopyGenerator& canopy_generator){ + canopy_generator.buildCanopy(*this); +} - row_spacing = 8; +WhiteSpruceCanopyParameters::WhiteSpruceCanopyParameters() : BaseCanopyParameters(){ - plant_count = make_int2(4,2); + needle_width = 0.0005; - canopy_origin = make_vec3(0,0,0); + needle_length = 0.05; - canopy_rotation = 0; + needle_color = make_RGBcolor(0.67,0.9,0.56); -} + needle_subdivisions = make_int2(1,1); -SorghumCanopyParameters::SorghumCanopyParameters(){ - sorghum_stage = 5; + wood_texture_file = "plugins/canopygenerator/textures/wood.jpg"; - // stage 1 - s1_stem_length = 0.04; + wood_subdivisions = 10; - s1_stem_radius = 0.003; + trunk_height = 10; - s1_stem_subdivisions = 10; + trunk_radius = 0.15; - s1_leaf_size1 = make_vec2(0.14,0.012); + base_height = 2.0; - s1_leaf_size2 = make_vec2(0.12,0.012); + crown_radius = 0.65; - s1_leaf_size3 = make_vec2(0.06,0.008); + shoot_radius = 0.02; - s1_leaf1_angle = 50; + level_spacing = 0.35; - s1_leaf2_angle = 50; + branches_per_level = 8; - s1_leaf3_angle = 50; + shoot_angle = 0.3*M_PI; - s1_leaf_subdivisions = make_int2(20,2); + canopy_configuration = "random"; - s1_leaf_texture_file = "plugins/canopygenerator/textures/s1_Sorghum_leaf.png"; + plant_spacing = make_vec2(10,10); + plant_count = make_int2(3,3); - // stage 2 - s2_stem_length = 0.2; +} - s2_stem_radius = 0.003; +WhiteSpruceCanopyParameters::WhiteSpruceCanopyParameters(const pugi::xml_node canopy_node) : WhiteSpruceCanopyParameters(){ + readParametersFromXML(canopy_node); +} - s2_stem_subdivisions = 10; +void WhiteSpruceCanopyParameters::readParametersFromXML(const pugi::xml_node canopy_node){ + BaseCanopyParameters::readParametersFromXML(canopy_node); - s2_leaf_size1 = make_vec2(0.25,0.02); + float new_needle_width = XMLloadfloat(canopy_node, "needle_width"); + if (new_needle_width != nullvalue_f) { + needle_width = new_needle_width; + } - s2_leaf_size2 = make_vec2(0.14,0.02); + float new_needle_length = XMLloadfloat(canopy_node, "needle_length"); + if (new_needle_length != nullvalue_f) { + needle_length = new_needle_length; + } - s2_leaf_size3 = make_vec2(0.2,0.015); + int2 new_needle_subdivisions = XMLloadint2(canopy_node, "needle_subdivisions"); + if (new_needle_subdivisions.x != nullvalue_i && new_needle_subdivisions.y != nullvalue_i) { + needle_subdivisions = new_needle_subdivisions; + } - s2_leaf_size4 = make_vec2(0.12,0.012); + RGBAcolor new_needle_color = XMLloadrgba(canopy_node, "needle_color"); + if (new_needle_color.a != 0) { + needle_color = make_RGBcolor(new_needle_color.r, new_needle_color.g, new_needle_color.b); + } - s2_leaf_size5 = make_vec2(0.08,0.01); + std::string new_wood_texture_file = XMLloadstring(canopy_node, "wood_texture_file"); + if ( new_wood_texture_file != nullvalue_s ) { + wood_texture_file = new_wood_texture_file; + } - s2_leaf1_angle = 25; + int new_wood_subdivisions = XMLloadint(canopy_node, "wood_subdivisions"); + if (new_wood_subdivisions != nullvalue_i) { + wood_subdivisions = new_wood_subdivisions; + } - s2_leaf2_angle = 50; + float new_trunk_height = XMLloadfloat(canopy_node, "trunk_height"); + if (new_trunk_height != nullvalue_f) { + trunk_height = new_trunk_height; + } - s2_leaf3_angle = 15; + float new_trunk_radius = XMLloadfloat(canopy_node, "trunk_radius"); + if (new_trunk_radius != nullvalue_f) { + trunk_radius = new_trunk_radius; + } - s2_leaf4_angle = 25; + float new_crown_radius = XMLloadfloat(canopy_node, "crown_radius"); + if (new_crown_radius != nullvalue_f) { + crown_radius = new_crown_radius; + } - s2_leaf5_angle = 10; + float new_shoot_radius = XMLloadfloat(canopy_node, "shoot_radius"); + if (new_shoot_radius != nullvalue_f) { + shoot_radius = new_shoot_radius; + } - s2_leaf_subdivisions = make_int2(30,2); + float new_level_spacing = XMLloadfloat(canopy_node, "level_spacing"); + if (new_level_spacing != nullvalue_f) { + level_spacing = new_level_spacing; + } - s2_leaf_texture_file = "plugins/canopygenerator/textures/s2_Sorghum_leaf.png"; + int new_branches_per_level = XMLloadint(canopy_node, "branches_per_level"); + if (new_branches_per_level != nullvalue_i) { + branches_per_level = new_branches_per_level; + } - // stage 3 - s3_stem_length = 1.2; + float new_shoot_angle = XMLloadfloat(canopy_node, "shoot_angle"); + if (new_shoot_angle != nullvalue_f) { + shoot_angle = new_shoot_angle; + } - s3_stem_radius = 0.01; + std::string new_canopy_configuration = XMLloadstring(canopy_node, "canopy_configuration"); + if (new_canopy_configuration != nullvalue_s) { + canopy_configuration = new_canopy_configuration; + } - s3_stem_subdivisions = 10; + vec2 new_plant_spacing = XMLloadvec2(canopy_node, "plant_spacing"); + if (new_plant_spacing.x != nullvalue_f && new_plant_spacing.y != nullvalue_f) { + plant_spacing = new_plant_spacing; + } - s3_leaf_size = make_vec2(0.8,0.08); + int2 new_plant_count = XMLloadint2(canopy_node, "plant_count"); + if (new_plant_count.x != nullvalue_i && new_plant_count.y != nullvalue_i) { + plant_count = new_plant_count; + } +} - s3_leaf_subdivisions = make_int2(30,2); +void WhiteSpruceCanopyParameters::buildPlant(CanopyGenerator& canopy_generator, helios::vec3 origin){ + canopy_generator.whitespruce(*this, origin); +} - s3_number_of_leaves = 15; +void WhiteSpruceCanopyParameters::buildCanopy(CanopyGenerator& canopy_generator){ + canopy_generator.buildCanopy(*this); +} - s3_mean_leaf_angle = 45; +TomatoParameters::TomatoParameters() : BaseCanopyParameters(){ - s3_leaf_texture_file = "plugins/canopygenerator/textures/s3_Sorghum_leaf.png"; + leaf_length = 0.2; - // stage 4 - s4_stem_length = 1.6; + leaf_subdivisions = make_int2(4,3); - s4_stem_radius = 0.01; + leaf_texture_file = "plugins/canopygenerator/textures/TomatoLeaf_big.png"; - s4_stem_subdivisions = 10; + shoot_color = make_RGBcolor(0.35,0.45,0.2); - s4_panicle_size = make_vec2(0.2,0.06); + shoot_subdivisions = 10; - s4_panicle_subdivisions = 5; + plant_height = 1.; - s4_seed_texture_file = "plugins/canopygenerator/textures/s4_Sorghum_seed.png"; + fruit_radius = 0.03; - s4_leaf_size = make_vec2(0.8,0.08); + fruit_color = make_RGBcolor(0.7,0.28,0.2); - s4_leaf_subdivisions = make_int2(30,2); + fruit_subdivisions = 8; - s4_number_of_leaves = 15; + plant_spacing = 2; - s4_mean_leaf_angle = 40; + row_spacing = 2; - s4_leaf_texture_file = "plugins/canopygenerator/textures/s4_Sorghum_leaf.png"; + plant_count = make_int2(3,3); - // stage 5 - s5_stem_length = 2.5; +} - s5_stem_radius = 0.01; +TomatoParameters::TomatoParameters(const pugi::xml_node canopy_node) : TomatoParameters(){ + readParametersFromXML(canopy_node); +} - s5_stem_bend = 0.15; +void TomatoParameters::readParametersFromXML(const pugi::xml_node canopy_node){ + BaseCanopyParameters::readParametersFromXML(canopy_node); - s5_stem_subdivisions = 10; + float new_leaf_length = XMLloadfloat(canopy_node, "leaf_length"); + if (new_leaf_length != nullvalue_f) { + leaf_length = new_leaf_length; + } - s5_panicle_size = make_vec2(0.3,0.08); + int2 new_leaf_subdivisions = XMLloadint2(canopy_node, "leaf_subdivisions"); + if (new_leaf_subdivisions.x != nullvalue_i && new_leaf_subdivisions.y != nullvalue_i) { + leaf_subdivisions = new_leaf_subdivisions; + } - s5_panicle_subdivisions = 5; + std::string new_leaf_texture_file = XMLloadstring(canopy_node, "leaf_texture_file"); + if ( new_leaf_texture_file != nullvalue_s ) { + leaf_texture_file = new_leaf_texture_file; + } - s5_seed_texture_file = "plugins/canopygenerator/textures/s5_Sorghum_seed.png"; + RGBAcolor new_shoot_color = XMLloadrgba(canopy_node, "shoot_color"); + if (new_shoot_color.a != 0 ) { + shoot_color = make_RGBcolor(new_shoot_color.r, new_shoot_color.g, new_shoot_color.b); + } - s5_leaf_size = make_vec2(0.9,0.125); + int new_shoot_subdivisions = XMLloadint(canopy_node, "shoot_subdivisions"); + if (new_shoot_subdivisions != nullvalue_i) { + shoot_subdivisions = new_shoot_subdivisions; + } - s5_leaf_subdivisions = make_int2(30,2); + float h = XMLloadfloat(canopy_node, "plant_height"); + if (h != nullvalue_f) { + plant_height = h; + } - s5_number_of_leaves = 24; + float gr = XMLloadfloat(canopy_node, "fruit_radius"); + if (gr != nullvalue_f) { + fruit_radius = gr; + } - s5_mean_leaf_angle = 20; // std = 10 degrees + RGBAcolor new_fruit_color = XMLloadrgba(canopy_node, "fruit_color"); + if (new_fruit_color.a != 0 ) { + fruit_color = make_RGBcolor(new_fruit_color.r, new_fruit_color.g, new_fruit_color.b); + } - s5_leaf_texture_file = "plugins/canopygenerator/textures/s5_Sorghum_leaf.png"; - // Canopy - plant_spacing = 0.45; + int new_fruit_subdivisions = XMLloadint(canopy_node, "fruit_subdivisions"); + if (new_fruit_subdivisions != nullvalue_i) { + fruit_subdivisions = uint(new_fruit_subdivisions); + } - row_spacing = 0.45; + float new_plant_spacing = XMLloadfloat(canopy_node, "plant_spacing"); + if (new_plant_spacing != nullvalue_f) { + plant_spacing = new_plant_spacing; + } - plant_count = make_int2(10 ,10); + float new_row_spacing = XMLloadfloat(canopy_node, "row_spacing"); + if (new_row_spacing != nullvalue_f) { + row_spacing = new_row_spacing; + } - canopy_origin = make_vec3(0,0,0); + int2 new_plant_count = XMLloadint2(canopy_node, "plant_count"); + if (new_plant_count.x != nullvalue_i && new_plant_count.y != nullvalue_i) { + plant_count = new_plant_count; + } } -BeanParameters::BeanParameters() { +void TomatoParameters::buildPlant(CanopyGenerator& canopy_generator, helios::vec3 origin){ + canopy_generator.tomato(*this, origin); +} - leaf_length = 0.075; +void TomatoParameters::buildCanopy(CanopyGenerator& canopy_generator){ + canopy_generator.buildCanopy(*this); +} - leaf_subdivisions = make_int2(6, 4); +StrawberryParameters::StrawberryParameters() : BaseCanopyParameters(){ - leaf_texture_file = "plugins/canopygenerator/textures/BeanLeaf.png"; + leaf_length = 0.1; - shoot_color = make_RGBcolor(0.6471, 0.7333, 0.1176); + leaf_subdivisions = make_int2(4,4); - shoot_subdivisions = 10; + leaf_texture_file = "plugins/canopygenerator/textures/StrawberryLeaf.png"; - stem_radius = 0.004; + stem_color = make_RGBcolor(0.35,0.45,0.2); - stem_length = 0.075; + stem_subdivisions = 10; - leaflet_length = 0.075; + stems_per_plant = 50; - pod_length = 0; //pods not supported yet + stem_radius = 0.005; - pod_color = make_RGBcolor(0.7, 0.28, 0.2); + plant_height = 0.4; - pod_subdivisions = 8; + fruit_radius = 0.025; - plant_spacing = 0.15; + fruit_texture_file = "plugins/canopygenerator/textures/StrawberryTexture.jpg"; - row_spacing = 0.6; + fruit_subdivisions = 12; - plant_count = make_int2(3, 3); + clusters_per_stem = 0.6; - germination_probability = 1.f; + plant_spacing = 0.5; - canopy_origin = make_vec3(0, 0, 0); + row_spacing = 1.5; - canopy_rotation = 0; + plant_count = make_int2(4,2); } - CanopyGenerator::CanopyGenerator( helios::Context* m_context ){ - - context = m_context; - - //seed the random number generator - unsigned seed = std::chrono::system_clock::now().time_since_epoch().count(); - generator.seed(seed); - - printmessages = true; - - enable_element_labels = false; - +StrawberryParameters::StrawberryParameters(const pugi::xml_node canopy_node) : StrawberryParameters(){ + readParametersFromXML(canopy_node); } -int CanopyGenerator::selfTest(){ +void StrawberryParameters::readParametersFromXML(const pugi::xml_node canopy_node){ + BaseCanopyParameters::readParametersFromXML(canopy_node); - std::cout << "Running canopy generator plug-in self-test..." << std::endl; + float new_leaf_length = XMLloadfloat(canopy_node, "leaf_length"); + if (new_leaf_length != nullvalue_f) { + leaf_length = new_leaf_length; + } - Context context_test; + int2 new_leaf_subdivisions = XMLloadint2(canopy_node, "leaf_subdivisions"); + if (new_leaf_subdivisions.x != nullvalue_i && new_leaf_subdivisions.y != nullvalue_i) { + leaf_subdivisions = new_leaf_subdivisions; + } - std::cout << "Generating default homogeneous canopy..." << std::flush; + std::string new_leaf_texture_file = XMLloadstring(canopy_node, "leaf_texture_file"); + if ( new_leaf_texture_file != nullvalue_s ) { + leaf_texture_file = new_leaf_texture_file; + } - CanopyGenerator canopygenerator_0(&context_test); - canopygenerator_0.disableMessages(); - HomogeneousCanopyParameters params_0; - canopygenerator_0.buildCanopy(params_0); - context_test.deletePrimitive(context_test.getAllUUIDs()); + int new_stem_subdivisions = XMLloadint(canopy_node, "stem_subdivisions"); + if (new_stem_subdivisions != nullvalue_i) { + stem_subdivisions = new_stem_subdivisions; + } - std::cout << "done." << std::endl; + float new_stem_radius = XMLloadfloat(canopy_node, "stem_radius"); + if (new_stem_radius != nullvalue_f) { + stem_radius = new_stem_radius; + } - std::cout << "Generating default spherical crowns canopy..." << std::flush; + float h = XMLloadfloat(canopy_node, "plant_height"); + if (h != nullvalue_f) { + plant_height = h; + } - CanopyGenerator canopygenerator_1(&context_test); - canopygenerator_1.disableMessages(); - SphericalCrownsCanopyParameters params_1; - canopygenerator_1.buildCanopy(params_1); - context_test.deletePrimitive(context_test.getAllUUIDs()); + int r = XMLloadint(canopy_node, "stems_per_plant"); + if (r != nullvalue_i) { + stems_per_plant = r; + } - std::cout << "done." << std::endl; + float gr = XMLloadfloat(canopy_node, "fruit_radius"); + if (gr != nullvalue_f) { + fruit_radius = gr; + } - std::cout << "Generating default VSP grapevine canopy..." << std::flush; + float clr = XMLloadfloat(canopy_node, "clusters_per_stem"); + if (clr != nullvalue_f) { + clusters_per_stem = clr; + } - CanopyGenerator canopygenerator_2(&context_test); - canopygenerator_2.disableMessages(); - VSPGrapevineParameters params_2; - params_2.grape_radius = 0; - canopygenerator_2.buildCanopy(params_2); - context_test.deletePrimitive(context_test.getAllUUIDs()); + int new_fruit_subdivisions = XMLloadint(canopy_node, "fruit_subdivisions"); + if (new_fruit_subdivisions != nullvalue_i) { + fruit_subdivisions = uint(new_fruit_subdivisions); + } - std::cout << "done." << std::endl; + std::string new_fruit_texture_file = XMLloadstring(canopy_node, "fruit_texture_file"); + if ( new_fruit_texture_file != nullvalue_s ) { + fruit_texture_file = new_fruit_texture_file; + } - std::cout << "Generating default split trellis grapevine canopy..." << std::flush; + float new_plant_spacing = XMLloadfloat(canopy_node, "plant_spacing"); + if (new_plant_spacing != nullvalue_f) { + plant_spacing = new_plant_spacing; + } - CanopyGenerator canopygenerator_3(&context_test); - canopygenerator_3.disableMessages(); - SplitGrapevineParameters params_3; - params_3.grape_radius = 0; - canopygenerator_3.buildCanopy(params_3); - context_test.deletePrimitive(context_test.getAllUUIDs()); + float new_row_spacing = XMLloadfloat(canopy_node, "row_spacing"); + if (new_row_spacing != nullvalue_f) { + row_spacing = new_row_spacing; + } - std::cout << "done." << std::endl; + int2 new_plant_count = XMLloadint2(canopy_node, "plant_count"); + if (new_plant_count.x != nullvalue_i && new_plant_count.y != nullvalue_i) { + plant_count = plant_count; + } +} - std::cout << "Generating default unilateral trellis grapevine canopy..." << std::flush; +void StrawberryParameters::buildPlant(CanopyGenerator& canopy_generator, helios::vec3 origin){ + canopy_generator.strawberry(*this, origin); +} - CanopyGenerator canopygenerator_4(&context_test); - canopygenerator_4.disableMessages(); - UnilateralGrapevineParameters params_4; - params_4.grape_radius = 0; - canopygenerator_4.buildCanopy(params_4); - context_test.deletePrimitive(context_test.getAllUUIDs()); +void StrawberryParameters::buildCanopy(CanopyGenerator& canopy_generator){ + canopy_generator.buildCanopy(*this); +} - std::cout << "done." << std::endl; +WalnutCanopyParameters::WalnutCanopyParameters() : BaseCanopyParameters(){ - std::cout << "Generating default goblet trellis grapevine canopy..." << std::flush; + leaf_length = 0.15; - CanopyGenerator canopygenerator_5(&context_test); - canopygenerator_5.disableMessages(); - GobletGrapevineParameters params_5; - params_5.grape_radius = 0; - canopygenerator_5.buildCanopy(params_5); - context_test.deletePrimitive(context_test.getAllUUIDs()); + leaf_subdivisions = make_int2(1,2); - std::cout << "done." << std::endl; + leaf_texture_file = "plugins/canopygenerator/textures/WalnutLeaf.png"; - std::cout << "Generating default strawberry canopy..." << std::flush; + wood_texture_file = "plugins/canopygenerator/textures/wood.jpg"; - CanopyGenerator canopygenerator_7(&context_test); - canopygenerator_7.disableMessages(); - StrawberryParameters params_7; - canopygenerator_7.buildCanopy(params_7); - context_test.deletePrimitive(context_test.getAllUUIDs()); + wood_subdivisions = 10; - std::cout << "done." << std::endl; + trunk_radius = 0.15; - std::cout << "Generating default walnut tree canopy (minus nuts)..." << std::flush; + trunk_height = 4.f; - CanopyGenerator canopygenerator_8(&context_test); - canopygenerator_8.disableMessages(); - WalnutCanopyParameters params_8; - params_8.fruit_radius = 0.f; - canopygenerator_8.buildCanopy(params_8); - context_test.deletePrimitive(context_test.getAllUUIDs()); + branch_length = make_vec3(4,0.75,0.75); - std::cout << "done." << std::endl; + fruit_radius = 0.04; - std::cout << "Generating default sorghum plant canopy..." << std::flush; + fruit_texture_file = "plugins/canopygenerator/textures/WalnutTexture.png"; - CanopyGenerator canopygenerator_9(&context_test); - canopygenerator_9.disableMessages(); - SorghumCanopyParameters params_9; - canopygenerator_9.buildCanopy(params_9); - context_test.deletePrimitive( context_test.getAllUUIDs() ); + fruit_subdivisions = 16; - std::cout << "done." << std::endl; + plant_spacing = 6; - std::cout << "Generating homogeneous canopy with randomly deleted primitives..." << std::flush; + row_spacing = 8; - CanopyGenerator canopygenerator_6(&context_test); - canopygenerator_6.disableMessages(); - HomogeneousCanopyParameters params_6; - canopygenerator_6.buildCanopy(params_6); + plant_count = make_int2(4,2); - std::vector UUIDs_leaves = flatten( canopygenerator_6.getLeafUUIDs(0) ); +} - context_test.deletePrimitive(UUIDs_leaves.at(0)); - context_test.deletePrimitive(UUIDs_leaves.at(11)); - context_test.deletePrimitive(UUIDs_leaves.at(23)); - context_test.deletePrimitive(UUIDs_leaves.back()); +WalnutCanopyParameters::WalnutCanopyParameters(const pugi::xml_node canopy_node) : WalnutCanopyParameters(){ + readParametersFromXML(canopy_node); +} - UUIDs_leaves = flatten( canopygenerator_6.getLeafUUIDs(0) ); +void WalnutCanopyParameters::readParametersFromXML(const pugi::xml_node canopy_node){ + BaseCanopyParameters::readParametersFromXML(canopy_node); - bool fail_flag = false; - for( uint UUID : UUIDs_leaves ){ - if( !context_test.doesPrimitiveExist( UUID ) ){ - fail_flag = true; - } + float new_leaf_length = XMLloadfloat(canopy_node, "leaf_length"); + if (new_leaf_length != nullvalue_f) { + leaf_length = new_leaf_length; } - std::vector UUIDs_all = canopygenerator_6.getAllUUIDs(0); - - fail_flag = false; - for( uint p : UUIDs_all ){ - if( !context_test.doesPrimitiveExist( p ) ){ - fail_flag = true; - } + int2 new_leaf_subdivisions = XMLloadint2(canopy_node, "leaf_subdivisions"); + if (new_leaf_subdivisions.x != nullvalue_i && new_leaf_subdivisions.y != nullvalue_i) { + leaf_subdivisions = new_leaf_subdivisions; } - context_test.deletePrimitive(context_test.getAllUUIDs()); - - std::cout << "done." << std::endl; - - if( fail_flag ){ - std::cout << "failed." << std::endl; - return 1; - }else{ - std::cout << "passed." << std::endl; - return 0; + std::string new_leaf_texture_file = XMLloadstring(canopy_node, "leaf_texture_file"); + if ( new_leaf_texture_file != nullvalue_s ) { + leaf_texture_file = new_leaf_texture_file; } -} - -void CanopyGenerator::loadXML( const char* filename ){ - - if( printmessages ){ - std::cout << "Reading XML file: " << filename << "..." << std::flush; + int new_wood_subdivisions = XMLloadint(canopy_node, "wood_subdivisions"); + if (new_wood_subdivisions != nullvalue_i) { + wood_subdivisions = new_wood_subdivisions; } - float nullvalue_f = 99999; - int nullvalue_i = 99999; - std::string nullvalue_s = "99999"; - //Check if file exists - std::ifstream f(filename); - if( !f.good() ){ - std::cerr << "failed." << std::endl; - throw( std::runtime_error("XML file " + std::string(filename) + " does not exist.") ); + float new_trunk_radius = XMLloadfloat(canopy_node, "trunk_radius"); + if (new_trunk_radius != nullvalue_f) { + trunk_radius = new_trunk_radius; } - // Using "pugixml" parser. See pugixml.org - pugi::xml_document xmldoc; + float new_trunk_height = XMLloadfloat(canopy_node, "trunk_height"); + if (new_trunk_height != nullvalue_f) { + trunk_height = new_trunk_height; + } - //load file - pugi::xml_parse_result result = xmldoc.load_file(filename); + vec3 new_branch_length = XMLloadvec3(canopy_node, "branch_length"); + if (new_branch_length.x != nullvalue_f && new_branch_length.y != nullvalue_f) { + branch_length = new_branch_length; + } - //error checking - if (!result){ - std::cout << "failed." << std::endl; - throw( std::runtime_error("XML file " + std::string(filename) + " parsed with errors, attribute value: [" + xmldoc.child("node").attribute("attr").value() + "]\nError description: " + result.description() + "\n")); + std::string new_fruit_texture_file = XMLloadstring(canopy_node, "fruit_texture_file"); + if ( new_fruit_texture_file != nullvalue_s ) { + fruit_texture_file = new_fruit_texture_file; } - pugi::xml_node helios = xmldoc.child("helios"); + int new_fruit_subdivisions = XMLloadint(canopy_node, "fruit_subdivisions"); + if (new_fruit_subdivisions != nullvalue_i) { + fruit_subdivisions = uint(new_fruit_subdivisions); + } - if( helios.empty() ){ - std::cout << "failed." << std::endl; - throw(std::runtime_error("ERROR (loadXML): XML file must have tag ' ... ' bounding all other tags.")); + float new_plant_spacing = XMLloadfloat(canopy_node, "plant_spacing"); + if (new_plant_spacing != nullvalue_f) { + plant_spacing = new_plant_spacing; } - //looping over any Canopy Generator blocks specified in XML file - for (pugi::xml_node cgen = helios.child("canopygenerator"); cgen; cgen = cgen.next_sibling("CanopyGenerator")) { + float new_row_spacing = XMLloadfloat(canopy_node, "row_spacing"); + if (new_row_spacing != nullvalue_f) { + row_spacing = new_row_spacing; + } - //looping over any canopy types specified + int2 new_plant_count = XMLloadint2(canopy_node, "plant_count"); + if (new_plant_count.x != nullvalue_i && new_plant_count.y != nullvalue_i) { + plant_count = new_plant_count; + } +} - //Homogeneous Canopy - for (pugi::xml_node s = cgen.child("HomogeneousCanopyParameters"); s; s = s.next_sibling( - "HomogeneousCanopyParameters")) { +void WalnutCanopyParameters::buildPlant(CanopyGenerator& canopy_generator, helios::vec3 origin){ + canopy_generator.walnut(*this, origin); +} - HomogeneousCanopyParameters homogeneouscanopyparameters; +void WalnutCanopyParameters::buildCanopy(CanopyGenerator& canopy_generator){ + canopy_generator.buildCanopy(*this); +} - // ----- leaf size ------// - vec2 leaf_size = XMLloadvec2(s, "leaf_size"); - if (leaf_size.x != nullvalue_f && leaf_size.y != nullvalue_f) { - homogeneouscanopyparameters.leaf_size = leaf_size; - } +SorghumCanopyParameters::SorghumCanopyParameters() : BaseCanopyParameters(){ + sorghum_stage = 5; - // ----- leaf subdivisions ------// - int2 leaf_subdivisions = XMLloadint2(s, "leaf_subdivisions"); - if (leaf_subdivisions.x != nullvalue_i && leaf_subdivisions.y != nullvalue_i) { - homogeneouscanopyparameters.leaf_subdivisions = leaf_subdivisions; - } + // stage 1 + s1_stem_length = 0.04; - // ----- leaf color ------// - RGBAcolor leaf_color = XMLloadrgba(s, "leaf_color"); - if (leaf_color.a != 0) { - homogeneouscanopyparameters.leaf_color = make_RGBcolor(leaf_color.r,leaf_color.g,leaf_color.b); - } + s1_stem_radius = 0.003; - // ----- leaf texture file ------// - std::string leaf_texture_file = XMLloadstring(s, "leaf_texture_file"); - if (leaf_texture_file != nullvalue_s) { - homogeneouscanopyparameters.leaf_texture_file = leaf_texture_file; - } + s1_stem_subdivisions = 10; - // ----- leaf area index ------// - float LAI = XMLloadfloat(s, "leaf_area_index"); - if (LAI != nullvalue_f) { - homogeneouscanopyparameters.leaf_area_index = LAI; - } + s1_leaf_size1 = make_vec2(0.14,0.012); - // ----- canopy height ------// - float h = XMLloadfloat(s, "canopy_height"); - if (h != nullvalue_f) { - homogeneouscanopyparameters.canopy_height = h; - } + s1_leaf_size2 = make_vec2(0.12,0.012); - // ----- canopy extent ------// - vec2 canopy_extent = XMLloadvec2(s, "canopy_extent"); - if (canopy_extent.x != nullvalue_f && canopy_extent.y != nullvalue_f) { - homogeneouscanopyparameters.canopy_extent = canopy_extent; - } + s1_leaf_size3 = make_vec2(0.06,0.008); - // ----- canopy origin ------// - vec3 canopy_origin = XMLloadvec3(s, "canopy_origin"); - if (canopy_origin.x != nullvalue_f && canopy_origin.y != nullvalue_f) { - homogeneouscanopyparameters.canopy_origin = canopy_origin; - } + s1_leaf1_angle = 50; - // ----- buffer ------// - std::string buffer = XMLloadstring(s, "buffer"); - if ( buffer != nullvalue_s ) { - homogeneouscanopyparameters.buffer = buffer; - } + s1_leaf2_angle = 50; - buildCanopy(homogeneouscanopyparameters); + s1_leaf3_angle = 50; - } + s1_leaf_subdivisions = make_int2(20,2); + s1_leaf_texture_file = "plugins/canopygenerator/textures/s1_Sorghum_leaf.png"; - //VSP Grapevine Canopy - for (pugi::xml_node s = cgen.child("VSPGrapevineParameters"); s; s = s.next_sibling("VSPGrapevineParameters")) { - VSPGrapevineParameters vspgrapevineparameters; + // stage 2 + s2_stem_length = 0.2; - float leaf_width = XMLloadfloat(s, "leaf_width"); - if (leaf_width != nullvalue_f) { - vspgrapevineparameters.leaf_width = leaf_width; - } + s2_stem_radius = 0.003; - int2 leaf_subdivisions = XMLloadint2(s, "leaf_subdivisions"); - if (leaf_subdivisions.x != nullvalue_i && leaf_subdivisions.y != nullvalue_i) { - vspgrapevineparameters.leaf_subdivisions = leaf_subdivisions; - } + s2_stem_subdivisions = 10; - std::string leaf_texture_file = XMLloadstring(s, "leaf_texture_file"); - if ( leaf_texture_file != nullvalue_s ) { - vspgrapevineparameters.leaf_texture_file = leaf_texture_file; - } + s2_leaf_size1 = make_vec2(0.25,0.02); - std::string wood_texture_file = XMLloadstring(s, "wood_texture_file"); - if ( wood_texture_file != nullvalue_s ) { - vspgrapevineparameters.wood_texture_file = wood_texture_file; - } + s2_leaf_size2 = make_vec2(0.14,0.02); - int wood_subdivisions = XMLloadint(s, "wood_subdivisions"); - if ( wood_subdivisions != nullvalue_i) { - vspgrapevineparameters.wood_subdivisions = wood_subdivisions; - } + s2_leaf_size3 = make_vec2(0.2,0.015); - float h = XMLloadfloat(s, "trunk_height"); - if (h != nullvalue_f) { - vspgrapevineparameters.trunk_height = h; - } + s2_leaf_size4 = make_vec2(0.12,0.012); - float r = XMLloadfloat(s, "trunk_radius"); - if (r != nullvalue_f) { - vspgrapevineparameters.trunk_radius = r; - } + s2_leaf_size5 = make_vec2(0.08,0.01); - float ch = XMLloadfloat(s, "cordon_height"); - if (ch != nullvalue_f) { - vspgrapevineparameters.cordon_height = ch; - } + s2_leaf1_angle = 25; - float cr = XMLloadfloat(s, "cordon_radius"); - if (cr != nullvalue_f) { - vspgrapevineparameters.cordon_radius = cr; - } + s2_leaf2_angle = 50; - float sl = XMLloadfloat(s, "shoot_length"); - if (sl != nullvalue_f) { - vspgrapevineparameters.shoot_length = sl; - } + s2_leaf3_angle = 15; - float sr = XMLloadfloat(s, "shoot_radius"); - if (sr != nullvalue_f) { - vspgrapevineparameters.shoot_radius = sr; - } + s2_leaf4_angle = 25; - int spc = XMLloadint(s, "shoots_per_cordon"); - if (spc != nullvalue_i) { - vspgrapevineparameters.shoots_per_cordon = uint(spc); - } + s2_leaf5_angle = 10; - float lsf = XMLloadfloat(s, "leaf_spacing_fraction"); - if (lsf != nullvalue_f) { - vspgrapevineparameters.leaf_spacing_fraction = lsf; - } + s2_leaf_subdivisions = make_int2(30,2); - float gr = XMLloadfloat(s, "grape_radius"); - if (gr != nullvalue_f) { - vspgrapevineparameters.grape_radius = gr; - } + s2_leaf_texture_file = "plugins/canopygenerator/textures/s2_Sorghum_leaf.png"; - float clr = XMLloadfloat(s, "cluster_radius"); - if (clr != nullvalue_f) { - vspgrapevineparameters.cluster_radius = clr; - } + // stage 3 + s3_stem_length = 1.2; - RGBAcolor grape_color = XMLloadrgba(s, "grape_color"); - if ( grape_color.a != 0 ) { - vspgrapevineparameters.grape_color = make_RGBcolor(grape_color.r,grape_color.g,grape_color.b); - } + s3_stem_radius = 0.01; - int grape_subdivisions = XMLloadint(s, "grape_subdivisions"); - if (grape_subdivisions != nullvalue_i) { - vspgrapevineparameters.grape_subdivisions = uint(grape_subdivisions); - } + s3_stem_subdivisions = 10; - float plant_spacing = XMLloadfloat(s, "plant_spacing"); - if (plant_spacing != nullvalue_f) { - vspgrapevineparameters.plant_spacing = plant_spacing; - } + s3_leaf_size = make_vec2(0.8,0.08); - float row_spacing = XMLloadfloat(s, "row_spacing"); - if (row_spacing != nullvalue_f) { - vspgrapevineparameters.row_spacing = row_spacing; - } + s3_leaf_subdivisions = make_int2(30,2); - int2 plant_count = XMLloadint2(s, "plant_count"); - if (plant_count.x != nullvalue_i && plant_count.y != nullvalue_i) { - vspgrapevineparameters.plant_count = plant_count; - } + s3_number_of_leaves = 15; - vec3 canopy_origin = XMLloadvec3(s, "canopy_origin"); - if (canopy_origin.x != nullvalue_f && canopy_origin.y != nullvalue_f) { - vspgrapevineparameters.canopy_origin = canopy_origin; - } + s3_mean_leaf_angle = 45; - float canopy_rotation = XMLloadfloat(s, "canopy_rotation"); - if (canopy_rotation != nullvalue_f) { - vspgrapevineparameters.canopy_rotation = canopy_rotation; - } + s3_leaf_texture_file = "plugins/canopygenerator/textures/s3_Sorghum_leaf.png"; - buildCanopy(vspgrapevineparameters); + // stage 4 + s4_stem_length = 1.6; - } + s4_stem_radius = 0.01; - //Split Grapevine Canopy - for (pugi::xml_node s = cgen.child("SplitGrapevineParameters"); s; s = s.next_sibling( - "SplitGrapevineParameters")) { + s4_stem_subdivisions = 10; - SplitGrapevineParameters splitgrapevineparameters; + s4_panicle_size = make_vec2(0.2,0.06); - float leaf_width = XMLloadfloat(s, "leaf_width"); - if (leaf_width != nullvalue_f) { - splitgrapevineparameters.leaf_width = leaf_width; - } + s4_panicle_subdivisions = 5; - int2 leaf_subdivisions = XMLloadint2(s, "leaf_subdivisions"); - if (leaf_subdivisions.x != nullvalue_i && leaf_subdivisions.y != nullvalue_i) { - splitgrapevineparameters.leaf_subdivisions = leaf_subdivisions; - } + s4_seed_texture_file = "plugins/canopygenerator/textures/s4_Sorghum_seed.png"; - std::string leaf_texture_file = XMLloadstring(s, "leaf_texture_file"); - if ( leaf_texture_file != nullvalue_s ) { - splitgrapevineparameters.leaf_texture_file = leaf_texture_file; - } + s4_leaf_size = make_vec2(0.8,0.08); - std::string wood_texture_file = XMLloadstring(s, "wood_texture_file"); - if ( wood_texture_file != nullvalue_s ) { - splitgrapevineparameters.wood_texture_file = wood_texture_file; - } + s4_leaf_subdivisions = make_int2(30,2); - int wood_subdivisions = XMLloadint(s, "wood_subdivisions"); - if (wood_subdivisions != nullvalue_i) { - splitgrapevineparameters.wood_subdivisions = wood_subdivisions; - } + s4_number_of_leaves = 15; - float h = XMLloadfloat(s, "trunk_height"); - if (h != nullvalue_f) { - splitgrapevineparameters.trunk_height = h; - } + s4_mean_leaf_angle = 40; - float r = XMLloadfloat(s, "trunk_radius"); - if (r != nullvalue_f) { - splitgrapevineparameters.trunk_radius = r; - } + s4_leaf_texture_file = "plugins/canopygenerator/textures/s4_Sorghum_leaf.png"; - float ch = XMLloadfloat(s, "cordon_height"); - if (ch != nullvalue_f) { - splitgrapevineparameters.cordon_height = ch; - } + // stage 5 + s5_stem_length = 2.5; - float cr = XMLloadfloat(s, "cordon_radius"); - if (cr != nullvalue_f) { - splitgrapevineparameters.cordon_radius = cr; - } + s5_stem_radius = 0.01; - float cs = XMLloadfloat(s, "cordon_spacing"); - if (cs != nullvalue_f) { - splitgrapevineparameters.cordon_spacing = cs; - } + s5_stem_bend = 0.15; - float sl = XMLloadfloat(s, "shoot_length"); - if (sl != nullvalue_f) { - splitgrapevineparameters.shoot_length = sl; - } + s5_stem_subdivisions = 10; - float sr = XMLloadfloat(s, "shoot_radius"); - if (sr != nullvalue_f) { - splitgrapevineparameters.shoot_radius = sr; - } + s5_panicle_size = make_vec2(0.3,0.08); - int spc = XMLloadint(s, "shoots_per_cordon"); - if (spc != nullvalue_i) { - splitgrapevineparameters.shoots_per_cordon = uint(spc); - } + s5_panicle_subdivisions = 5; -/* - float spa = XMLloadfloat( s, "shoots_tip_angle" ); - if( spa != nullvalue_f ){ - splitgrapevineparameters.shoots_tip_angle = uint(spa); -*/ - float lsf = XMLloadfloat(s, "leaf_spacing_fraction"); - if (lsf != nullvalue_f) { - splitgrapevineparameters.leaf_spacing_fraction = lsf; - } + s5_seed_texture_file = "plugins/canopygenerator/textures/s5_Sorghum_seed.png"; - float gr = XMLloadfloat(s, "grape_radius"); - if (gr != nullvalue_f) { - splitgrapevineparameters.grape_radius = gr; - } + s5_leaf_size = make_vec2(0.9,0.125); - float clr = XMLloadfloat(s, "cluster_radius"); - if (clr != nullvalue_f) { - splitgrapevineparameters.cluster_radius = clr; - } + s5_leaf_subdivisions = make_int2(30,2); - RGBAcolor grape_color = XMLloadrgba(s, "grape_color"); - if (grape_color.a!=0 ) { - splitgrapevineparameters.grape_color = make_RGBcolor(grape_color.r,grape_color.g,grape_color.b); - } + s5_number_of_leaves = 24; - int grape_subdivisions = XMLloadint(s, "grape_subdivisions"); - if (grape_subdivisions != nullvalue_i) { - splitgrapevineparameters.grape_subdivisions = uint(grape_subdivisions); - } + s5_mean_leaf_angle = 20; // std = 10 degrees - float plant_spacing = XMLloadfloat(s, "plant_spacing"); - if (plant_spacing != nullvalue_f) { - splitgrapevineparameters.plant_spacing = plant_spacing; - } + s5_leaf_texture_file = "plugins/canopygenerator/textures/s5_Sorghum_leaf.png"; - float row_spacing = XMLloadfloat(s, "row_spacing"); - if (row_spacing != nullvalue_f) { - splitgrapevineparameters.row_spacing = row_spacing; - } + // Canopy + plant_spacing = 0.45; - int2 plant_count = XMLloadint2(s, "plant_count"); - if (plant_count.x != nullvalue_i && plant_count.y != nullvalue_i) { - splitgrapevineparameters.plant_count = plant_count; - } + row_spacing = 0.45; - vec3 canopy_origin = XMLloadvec3(s, "canopy_origin"); - if (canopy_origin.x != nullvalue_f && canopy_origin.y != nullvalue_f) { - splitgrapevineparameters.canopy_origin = canopy_origin; - } + plant_count = make_int2(10 ,10); - float canopy_rotation = XMLloadfloat(s, "canopy_rotation"); - if (canopy_rotation != nullvalue_f) { - splitgrapevineparameters.canopy_rotation = canopy_rotation; - } +} +SorghumCanopyParameters::SorghumCanopyParameters(const pugi::xml_node canopy_node) : SorghumCanopyParameters(){ + readParametersFromXML(canopy_node); +} - buildCanopy(splitgrapevineparameters); +void SorghumCanopyParameters::readParametersFromXML(const pugi::xml_node canopy_node){ + BaseCanopyParameters::readParametersFromXML(canopy_node); - } + int new_sorghum_stage = XMLloadint(canopy_node, "sorghum_stage"); + if (new_sorghum_stage != nullvalue_i) { + sorghum_stage = new_sorghum_stage; + } + // STAGE 1 + float new_s1_stem_length = XMLloadint(canopy_node, "s1_stem_length"); + if (new_s1_stem_length != nullvalue_i) { + s1_stem_length = new_s1_stem_length; + } - //UnilateralGrapevineParameters Canopy - for (pugi::xml_node s = cgen.child("UnilateralGrapevineParameters"); s; s = s.next_sibling( - "UnilateralGrapevineParameters")) { + float new_s1_stem_radius = XMLloadfloat(canopy_node, "s1_stem_radius"); + if (new_s1_stem_radius != nullvalue_f) { + s1_stem_radius = new_s1_stem_radius; + } - UnilateralGrapevineParameters unilateralgrapevineparameters; + int new_s1_stem_subdivisions = XMLloadint(canopy_node, "s1_stem_subdivisions"); + if (new_s1_stem_subdivisions != nullvalue_f) { + s1_stem_subdivisions = uint(new_s1_stem_subdivisions); + } - float leaf_width = XMLloadfloat(s, "leaf_width"); - if (leaf_width != nullvalue_f) { - unilateralgrapevineparameters.leaf_width = leaf_width; - } + vec2 new_s1_leaf_size1 = XMLloadvec2(canopy_node, "s1_leaf_size1"); + if (new_s1_leaf_size1.x != nullvalue_f && new_s1_leaf_size1.y != nullvalue_f) { + s1_leaf_size1 = new_s1_leaf_size1; + } - int2 leaf_subdivisions = XMLloadint2(s, "leaf_subdivisions"); - if (leaf_subdivisions.x != nullvalue_i && leaf_subdivisions.y != nullvalue_i) { - unilateralgrapevineparameters.leaf_subdivisions = leaf_subdivisions; - } + vec2 new_s1_leaf_size2 = XMLloadvec2(canopy_node, "s1_leaf_size2"); + if (new_s1_leaf_size2.x != nullvalue_f && new_s1_leaf_size2.y != nullvalue_f) { + s1_leaf_size2 = new_s1_leaf_size2; + } - std::string leaf_texture_file = XMLloadstring(s, "leaf_texture_file"); - if ( leaf_texture_file != nullvalue_s ) { - unilateralgrapevineparameters.leaf_texture_file = leaf_texture_file; - } + vec2 new_s1_leaf_size3 = XMLloadvec2(canopy_node, "s1_leaf_size3"); + if (new_s1_leaf_size3.x != nullvalue_f && new_s1_leaf_size3.y != nullvalue_f) { + s1_leaf_size3 = new_s1_leaf_size3; + } - std::string wood_texture_file = XMLloadstring(s, "wood_texture_file"); - if ( wood_texture_file != nullvalue_s ) { - unilateralgrapevineparameters.wood_texture_file = wood_texture_file; - } + float new_s1_leaf1_angle = XMLloadfloat(canopy_node, "s1_leaf1_angle"); + if (new_s1_leaf1_angle != nullvalue_f) { + s1_leaf1_angle = new_s1_leaf1_angle; + } - int wood_subdivisions = XMLloadint(s, "wood_subdivisions"); - if ( wood_subdivisions != nullvalue_i) { - unilateralgrapevineparameters.wood_subdivisions = wood_subdivisions; - } + float new_s1_leaf2_angle = XMLloadfloat(canopy_node, "s1_leaf2_angle"); + if (new_s1_leaf2_angle != nullvalue_f) { + s1_leaf2_angle = new_s1_leaf2_angle; + } - float h = XMLloadfloat(s, "trunk_height"); - if (h != nullvalue_f) { - unilateralgrapevineparameters.trunk_height = h; - } + float new_s1_leaf3_angle = XMLloadfloat(canopy_node, "s1_leaf3_angle"); + if (new_s1_leaf3_angle != nullvalue_f) { + s1_leaf3_angle = new_s1_leaf3_angle; + } - float r = XMLloadfloat(s, "trunk_radius"); - if (r != nullvalue_f) { - unilateralgrapevineparameters.trunk_radius = r; - } + int2 new_s1_leaf_subdivisions = XMLloadint2(canopy_node, "s1_leaf_subdivisions"); + if (new_s1_leaf_subdivisions.x != nullvalue_i && new_s1_leaf_subdivisions.y != nullvalue_i) { + s1_leaf_subdivisions = new_s1_leaf_subdivisions; + } - float ch = XMLloadfloat(s, "cordon_height"); - if (ch != nullvalue_f) { - unilateralgrapevineparameters.cordon_height = ch; - } + std::string new_s1_leaf_texture_file = XMLloadstring(canopy_node, "s1_leaf_texture_file"); + if (new_s1_leaf_texture_file.compare(nullvalue_s) != 0) { + s1_leaf_texture_file = new_s1_leaf_texture_file; + } - float cr = XMLloadfloat(s, "cordon_radius"); - if (cr != nullvalue_f) { - unilateralgrapevineparameters.cordon_radius = cr; - } + // STAGE 2 + float new_s2_stem_length = XMLloadint(canopy_node, "s2_stem_length"); + if (new_s2_stem_length != nullvalue_i) { + s2_stem_length = new_s2_stem_length; + } - float sl = XMLloadfloat(s, "shoot_length"); - if (sl != nullvalue_f) { - unilateralgrapevineparameters.shoot_length = sl; - } + float new_s2_stem_radius = XMLloadfloat(canopy_node, "s2_stem_radius"); + if (new_s2_stem_radius != nullvalue_f) { + s2_stem_radius = new_s2_stem_radius; + } - float sr = XMLloadfloat(s, "shoot_radius"); - if (sr != nullvalue_f) { - unilateralgrapevineparameters.shoot_radius = sr; - } + int new_s2_stem_subdivisions = XMLloadint(canopy_node, "s2_stem_subdivisions"); + if (new_s2_stem_subdivisions != nullvalue_f) { + s2_stem_subdivisions = uint(new_s2_stem_subdivisions); + } - int spc = XMLloadint(s, "shoots_per_cordon"); - if (spc != nullvalue_i) { - unilateralgrapevineparameters.shoots_per_cordon = uint(spc); - } + vec2 new_s2_leaf_size1 = XMLloadvec2(canopy_node, "s2_leaf_size1"); + if (new_s2_leaf_size1.x != nullvalue_f && new_s2_leaf_size1.y != nullvalue_f) { + s2_leaf_size1 = new_s2_leaf_size1; + } -/* - float spa = XMLloadfloat( s, "shoots_tip_angle" ); - if( spa != nullvalue_f ){ - unilateralgrapevineparameters.shoots_tip_angle = uint(spa); - }*/ + vec2 new_s2_leaf_size2 = XMLloadvec2(canopy_node, "s2_leaf_size2"); + if (new_s2_leaf_size2.x != nullvalue_f && new_s2_leaf_size2.y != nullvalue_f) { + s2_leaf_size2 = new_s2_leaf_size2; + } - float lsf = XMLloadfloat(s, "leaf_spacing_fraction"); - if (lsf != nullvalue_f) { - unilateralgrapevineparameters.leaf_spacing_fraction = lsf; - } + vec2 new_s2_leaf_size3 = XMLloadvec2(canopy_node, "s2_leaf_size3"); + if (new_s2_leaf_size3.x != nullvalue_f && new_s2_leaf_size3.y != nullvalue_f) { + s2_leaf_size3 = new_s2_leaf_size3; + } - float gr = XMLloadfloat(s, "grape_radius"); - if (gr != nullvalue_f) { - unilateralgrapevineparameters.grape_radius = gr; - } + vec2 new_s2_leaf_size4 = XMLloadvec2(canopy_node, "s2_leaf_size4"); + if (new_s2_leaf_size4.x != nullvalue_f && new_s2_leaf_size4.y != nullvalue_f) { + s2_leaf_size4 = new_s2_leaf_size4; + } - float clr = XMLloadfloat(s, "cluster_radius"); - if (clr != nullvalue_f) { - unilateralgrapevineparameters.cluster_radius = clr; - } + vec2 new_s2_leaf_size5 = XMLloadvec2(canopy_node, "s2_leaf_size5"); + if (new_s2_leaf_size5.x != nullvalue_f && new_s2_leaf_size5.y != nullvalue_f) { + s2_leaf_size5 = new_s2_leaf_size5; + } - RGBAcolor grape_color = XMLloadrgba(s, "grape_color"); - if (grape_color.a!=0 ) { - unilateralgrapevineparameters.grape_color = make_RGBcolor(grape_color.r,grape_color.g,grape_color.b); - } + float new_s2_leaf1_angle = XMLloadfloat(canopy_node, "s2_leaf1_angle"); + if (new_s2_leaf1_angle != nullvalue_f) { + s2_leaf1_angle = new_s2_leaf1_angle; + } - int grape_subdivisions = XMLloadint(s, "grape_subdivisions"); - if (grape_subdivisions != nullvalue_i) { - unilateralgrapevineparameters.grape_subdivisions = uint(grape_subdivisions); - } + float new_s2_leaf2_angle = XMLloadfloat(canopy_node, "s2_leaf2_angle"); + if (new_s2_leaf2_angle != nullvalue_f) { + s2_leaf2_angle = new_s2_leaf2_angle; + } - float plant_spacing = XMLloadfloat(s, "plant_spacing"); - if (plant_spacing != nullvalue_f) { - unilateralgrapevineparameters.plant_spacing = plant_spacing; - } + float new_s2_leaf3_angle = XMLloadfloat(canopy_node, "s2_leaf3_angle"); + if (new_s2_leaf3_angle != nullvalue_f) { + s2_leaf3_angle = new_s2_leaf3_angle; + } - float row_spacing = XMLloadfloat(s, "row_spacing"); - if (row_spacing != nullvalue_f) { - unilateralgrapevineparameters.row_spacing = row_spacing; - } + float new_s2_leaf4_angle = XMLloadfloat(canopy_node, "s2_leaf4_angle"); + if (new_s2_leaf4_angle != nullvalue_f) { + s2_leaf4_angle = new_s2_leaf4_angle; + } - int2 plant_count = XMLloadint2(s, "plant_count"); - if (plant_count.x != nullvalue_i && plant_count.y != nullvalue_i) { - unilateralgrapevineparameters.plant_count = plant_count; - } + float new_s2_leaf5_angle = XMLloadfloat(canopy_node, "s2_leaf5_angle"); + if (new_s2_leaf3_angle != nullvalue_f) { + s2_leaf5_angle = new_s2_leaf5_angle; + } - vec3 canopy_origin = XMLloadvec3(s, "canopy_origin"); - if (canopy_origin.x != nullvalue_f && canopy_origin.y != nullvalue_f) { - unilateralgrapevineparameters.canopy_origin = canopy_origin; - } + int2 new_s2_leaf_subdivisions = XMLloadint2(canopy_node, "s2_leaf_subdivisions"); + if (new_s2_leaf_subdivisions.x != nullvalue_i && new_s2_leaf_subdivisions.y != nullvalue_i) { + s2_leaf_subdivisions = new_s2_leaf_subdivisions; + } - float canopy_rotation = XMLloadfloat(s, "canopy_rotation"); - if (canopy_rotation != nullvalue_f) { - unilateralgrapevineparameters.canopy_rotation = canopy_rotation; - } + std::string new_s2_leaf_texture_file = XMLloadstring(canopy_node, "s2_leaf_texture_file"); + if (new_s2_leaf_texture_file.compare(nullvalue_s) != 0) { + s2_leaf_texture_file = new_s2_leaf_texture_file; + } + // STAGE 3 + float new_s3_stem_length = XMLloadint(canopy_node, "s3_stem_length"); + if (new_s3_stem_length != nullvalue_i) { + s3_stem_length = new_s3_stem_length; + } - buildCanopy(unilateralgrapevineparameters); + float new_s3_stem_radius = XMLloadfloat(canopy_node, "s3_stem_radius"); + if (new_s3_stem_radius != nullvalue_f) { + s3_stem_radius = new_s3_stem_radius; + } - } + int new_s3_stem_subdivisions = XMLloadint(canopy_node, "s3_stem_subdivisions"); + if (new_s3_stem_subdivisions != nullvalue_f) { + s3_stem_subdivisions = uint(new_s3_stem_subdivisions); + } + vec2 new_s3_leaf_size = XMLloadvec2(canopy_node, "s3_leaf_size"); + if (new_s3_leaf_size.x != nullvalue_f && new_s3_leaf_size.y != nullvalue_f) { + s3_leaf_size = new_s3_leaf_size; + } - //GobletGrapevineParameters Canopy - for (pugi::xml_node s = cgen.child("GobletGrapevineParameters"); s; s = s.next_sibling( - "GobletGrapevineParameters")) { + int2 new_s3_leaf_subdivisions = XMLloadint2(canopy_node, "s3_leaf_subdivisions"); + if (new_s3_leaf_subdivisions.x != nullvalue_i && new_s3_leaf_subdivisions.y != nullvalue_i) { + s3_leaf_subdivisions = new_s3_leaf_subdivisions; + } - GobletGrapevineParameters gobletgrapevineparameters; + int new_s3_number_of_leaves = XMLloadint(canopy_node, "s3_number_of_leaves"); + if (new_s3_number_of_leaves != nullvalue_i) { + s3_number_of_leaves = new_s3_number_of_leaves; + } - float leaf_width = XMLloadfloat(s, "leaf_width"); - if (leaf_width != nullvalue_f) { - gobletgrapevineparameters.leaf_width = leaf_width; - } + float new_s3_mean_leaf_angle = XMLloadfloat(canopy_node, "s3_mean_leaf_angle"); + if (new_s3_mean_leaf_angle != nullvalue_f) { + s3_mean_leaf_angle = new_s3_mean_leaf_angle; + } - int2 leaf_subdivisions = XMLloadint2(s, "leaf_subdivisions"); - if (leaf_subdivisions.x != nullvalue_i && leaf_subdivisions.y != nullvalue_i) { - gobletgrapevineparameters.leaf_subdivisions = leaf_subdivisions; - } + std::string new_s3_leaf_texture_file = XMLloadstring(canopy_node, "s3_leaf_texture_file"); + if (new_s3_leaf_texture_file.compare(nullvalue_s) != 0) { + s3_leaf_texture_file = new_s3_leaf_texture_file; + } - std::string leaf_texture_file = XMLloadstring(s, "leaf_texture_file"); - if ( leaf_texture_file != nullvalue_s ) { - gobletgrapevineparameters.leaf_texture_file = leaf_texture_file; - } + // STAGE 4 + float new_s4_stem_length = XMLloadint(canopy_node, "s4_stem_length"); + if (new_s4_stem_length != nullvalue_i) { + s4_stem_length = new_s4_stem_length; + } - std::string wood_texture_file = XMLloadstring(s, "wood_texture_file"); - if ( wood_texture_file != nullvalue_s ) { - gobletgrapevineparameters.wood_texture_file = wood_texture_file; - } + float new_s4_stem_radius = XMLloadfloat(canopy_node, "s4_stem_radius"); + if (new_s4_stem_radius != nullvalue_f) { + s4_stem_radius = new_s4_stem_radius; + } - int wood_subdivisions = XMLloadint(s, "wood_subdivisions"); - if (wood_subdivisions != nullvalue_i) { - gobletgrapevineparameters.wood_subdivisions = wood_subdivisions; - } + int new_s4_stem_subdivisions = XMLloadint(canopy_node, "s4_stem_subdivisions"); + if (new_s4_stem_subdivisions != nullvalue_f) { + s4_stem_subdivisions = uint(new_s4_stem_subdivisions); + } - float h = XMLloadfloat(s, "trunk_height"); - if (h != nullvalue_f) { - gobletgrapevineparameters.trunk_height = h; - } + vec2 new_s4_panicle_size = XMLloadvec2(canopy_node, "s4_panicle_size"); + if (new_s4_panicle_size.x != nullvalue_f && new_s4_panicle_size.y != nullvalue_f) { + s4_panicle_size = new_s4_panicle_size; + } - float r = XMLloadfloat(s, "trunk_radius"); - if (r != nullvalue_f) { - gobletgrapevineparameters.trunk_radius = r; - } + int new_s4_panicle_subdivisions = XMLloadint(canopy_node, "s4_panicle_subdivisions"); + if (new_s4_panicle_subdivisions != nullvalue_f) { + s4_panicle_subdivisions = uint(new_s4_panicle_subdivisions); + } - float ch = XMLloadfloat(s, "cordon_height"); - if (ch != nullvalue_f) { - gobletgrapevineparameters.cordon_height = ch; - } + std::string new_s4_seed_texture_file = XMLloadstring(canopy_node, "s4_seed_texture_file"); + if (new_s4_seed_texture_file.compare(nullvalue_s) != 0) { + s4_seed_texture_file = new_s4_seed_texture_file; + } - float cr = XMLloadfloat(s, "cordon_radius"); - if (cr != nullvalue_f) { - gobletgrapevineparameters.cordon_radius = cr; - } + vec2 new_s4_leaf_size = XMLloadvec2(canopy_node, "s4_leaf_size"); + if (new_s4_leaf_size.x != nullvalue_f && new_s4_leaf_size.y != nullvalue_f) { + s4_leaf_size = new_s4_leaf_size; + } - float sl = XMLloadfloat(s, "shoot_length"); - if (sl != nullvalue_f) { - gobletgrapevineparameters.shoot_length = sl; - } + int2 new_s4_leaf_subdivisions = XMLloadint2(canopy_node, "s4_leaf_subdivisions"); + if (new_s4_leaf_subdivisions.x != nullvalue_i && new_s4_leaf_subdivisions.y != nullvalue_i) { + s4_leaf_subdivisions = new_s4_leaf_subdivisions; + } - float sr = XMLloadfloat(s, "shoot_radius"); - if (sr != nullvalue_f) { - gobletgrapevineparameters.shoot_radius = sr; - } + int new_s4_number_of_leaves = XMLloadint(canopy_node, "s4_number_of_leaves"); + if (new_s4_number_of_leaves != nullvalue_i) { + s4_number_of_leaves = new_s4_number_of_leaves; + } - int spc = XMLloadint(s, "shoots_per_cordon"); - if (spc != nullvalue_i) { - gobletgrapevineparameters.shoots_per_cordon = uint(spc); - } -/* - float spa = XMLloadfloat( s, "shoots_tip_angle" ); - if( spa != nullvalue_f ){ - gobletgrapevineparameters.shoots_tip_angle = uint(spa); - }*/ - - float lsf = XMLloadfloat(s, "leaf_spacing_fraction"); - if (lsf != nullvalue_f) { - gobletgrapevineparameters.leaf_spacing_fraction = lsf; - } + float new_s4_mean_leaf_angle = XMLloadfloat(canopy_node, "s4_mean_leaf_angle"); + if (new_s4_mean_leaf_angle != nullvalue_f) { + s4_mean_leaf_angle = new_s4_mean_leaf_angle; + } - float gr = XMLloadfloat(s, "grape_radius"); - if (gr != nullvalue_f) { - gobletgrapevineparameters.grape_radius = gr; - } + std::string new_s4_leaf_texture_file = XMLloadstring(canopy_node, "s4_leaf_texture_file"); + if (new_s4_leaf_texture_file.compare(nullvalue_s) != 0) { + s4_leaf_texture_file = new_s4_leaf_texture_file; + } - float clr = XMLloadfloat(s, "cluster_radius"); - if (clr != nullvalue_f) { - gobletgrapevineparameters.cluster_radius = clr; - } + // STAGE 5 + float new_s5_stem_length = XMLloadint(canopy_node, "s5_stem_length"); + if (new_s5_stem_length != nullvalue_i) { + s5_stem_length = new_s5_stem_length; + } - RGBAcolor grape_color = XMLloadrgba(s, "grape_color"); - if (grape_color.a != 0 ) { - gobletgrapevineparameters.grape_color = make_RGBcolor(grape_color.r,grape_color.g,grape_color.b); - } + float new_s5_stem_radius = XMLloadfloat(canopy_node, "s5_stem_radius"); + if (new_s5_stem_radius != nullvalue_f) { + s5_stem_radius = new_s5_stem_radius; + } - int grape_subdivisions = XMLloadint(s, "grape_subdivisions"); - if (grape_subdivisions != nullvalue_i) { - gobletgrapevineparameters.grape_subdivisions = uint(grape_subdivisions); - } + float new_s5_stem_bend = XMLloadfloat(canopy_node, "s5_stem_bend"); + if (new_s5_stem_bend != nullvalue_f) { + s5_stem_bend = new_s5_stem_bend; + } - float plant_spacing = XMLloadfloat(s, "plant_spacing"); - if (plant_spacing != nullvalue_f) { - gobletgrapevineparameters.plant_spacing = plant_spacing; - } + int new_s5_stem_subdivisions = XMLloadint(canopy_node, "s5_stem_subdivisions"); + if (new_s5_stem_subdivisions != nullvalue_f) { + s5_stem_subdivisions = uint(new_s5_stem_subdivisions); + } - float row_spacing = XMLloadfloat(s, "row_spacing"); - if (row_spacing != nullvalue_f) { - gobletgrapevineparameters.row_spacing = row_spacing; - } + vec2 new_s5_panicle_size = XMLloadvec2(canopy_node, "s5_panicle_size"); + if (new_s5_panicle_size.x != nullvalue_f && new_s5_panicle_size.y != nullvalue_f) { + s5_panicle_size = new_s5_panicle_size; + } - int2 plant_count = XMLloadint2(s, "plant_count"); - if (plant_count.x != nullvalue_i && plant_count.y != nullvalue_i) { - gobletgrapevineparameters.plant_count = plant_count; - } + int new_s5_panicle_subdivisions = XMLloadint(canopy_node, "s5_panicle_subdivisions"); + if (new_s5_panicle_subdivisions != nullvalue_f) { + s5_panicle_subdivisions = uint(new_s5_panicle_subdivisions); + } - vec3 canopy_origin = XMLloadvec3(s, "canopy_origin"); - if (canopy_origin.x != nullvalue_f && canopy_origin.y != nullvalue_f) { - gobletgrapevineparameters.canopy_origin = canopy_origin; - } + std::string new_s5_seed_texture_file = XMLloadstring(canopy_node, "s5_seed_texture_file"); + if (new_s5_seed_texture_file.compare(nullvalue_s) != 0) { + s5_seed_texture_file = new_s5_seed_texture_file; + } - float canopy_rotation = XMLloadfloat(s, "canopy_rotation"); - if (canopy_rotation != nullvalue_f) { - gobletgrapevineparameters.canopy_rotation = canopy_rotation; - } + vec2 new_s5_leaf_size = XMLloadvec2(canopy_node, "s5_leaf_size"); + if (new_s5_leaf_size.x != nullvalue_f && new_s5_leaf_size.y != nullvalue_f) { + s5_leaf_size = new_s5_leaf_size; + } + int2 new_s5_leaf_subdivisions = XMLloadint2(canopy_node, "s5_leaf_subdivisions"); + if (new_s5_leaf_subdivisions.x != nullvalue_i && new_s5_leaf_subdivisions.y != nullvalue_i) { + s5_leaf_subdivisions = new_s5_leaf_subdivisions; + } - buildCanopy(gobletgrapevineparameters); + int new_s5_number_of_leaves = XMLloadint(canopy_node, "s5_number_of_leaves"); + if (new_s5_number_of_leaves != nullvalue_i) { + s5_number_of_leaves = new_s5_number_of_leaves; + } - } + float new_s5_mean_leaf_angle = XMLloadfloat(canopy_node, "s5_mean_leaf_angle"); + if (new_s5_mean_leaf_angle != nullvalue_f) { + s5_mean_leaf_angle = new_s5_mean_leaf_angle; + } - //StrawberryParameters Canopy - for (pugi::xml_node s = cgen.child("StrawberryParameters"); s; s = s.next_sibling("StrawberryParameters")) { + std::string new_s5_leaf_texture_file = XMLloadstring(canopy_node, "s5_leaf_texture_file"); + if (new_s5_leaf_texture_file.compare(nullvalue_s) != 0) { + s5_leaf_texture_file = new_s5_leaf_texture_file; + } - StrawberryParameters strawberryparameters; + float new_plant_spacing = XMLloadfloat(canopy_node, "plant_spacing"); + if (new_plant_spacing != nullvalue_f) { + plant_spacing = new_plant_spacing; + } - float leaf_length = XMLloadfloat(s, "leaf_length"); - if (leaf_length != nullvalue_f) { - strawberryparameters.leaf_length = leaf_length; - } + float new_row_spacing = XMLloadfloat(canopy_node, "row_spacing"); + if (new_row_spacing != nullvalue_f) { + row_spacing = new_row_spacing; + } - int2 leaf_subdivisions = XMLloadint2(s, "leaf_subdivisions"); - if (leaf_subdivisions.x != nullvalue_i && leaf_subdivisions.y != nullvalue_i) { - strawberryparameters.leaf_subdivisions = leaf_subdivisions; - } + int2 new_plant_count = XMLloadint2(canopy_node, "plant_count"); + if (new_plant_count.x != nullvalue_i && new_plant_count.y != nullvalue_i) { + plant_count = new_plant_count; + } +} - std::string leaf_texture_file = XMLloadstring(s, "leaf_texture_file"); - if ( leaf_texture_file != nullvalue_s ) { - strawberryparameters.leaf_texture_file = leaf_texture_file; - } +void SorghumCanopyParameters::buildPlant(CanopyGenerator& canopy_generator, helios::vec3 origin){ + canopy_generator.sorghum(*this, origin); +} - int stem_subdivisions = XMLloadint(s, "stem_subdivisions"); - if (stem_subdivisions != nullvalue_i) { - strawberryparameters.stem_subdivisions = stem_subdivisions; - } +void SorghumCanopyParameters::buildCanopy(CanopyGenerator& canopy_generator){ + canopy_generator.buildCanopy(*this); +} - float stem_radius = XMLloadfloat(s, "stem_radius"); - if (stem_radius != nullvalue_f) { - strawberryparameters.stem_radius = stem_radius; - } +BeanParameters::BeanParameters() : BaseCanopyParameters() { - float h = XMLloadfloat(s, "plant_height"); - if (h != nullvalue_f) { - strawberryparameters.plant_height = h; - } + leaf_length = 0.075; - int r = XMLloadint(s, "stems_per_plant"); - if (r != nullvalue_i) { - strawberryparameters.stems_per_plant = r; - } + leaf_subdivisions = make_int2(6, 4); - float gr = XMLloadfloat(s, "fruit_radius"); - if (gr != nullvalue_f) { - strawberryparameters.fruit_radius = gr; - } + leaf_texture_file = "plugins/canopygenerator/textures/BeanLeaf.png"; - float clr = XMLloadfloat(s, "clusters_per_stem"); - if (clr != nullvalue_f) { - strawberryparameters.clusters_per_stem = clr; - } + shoot_color = make_RGBcolor(0.6471, 0.7333, 0.1176); - int fruit_subdivisions = XMLloadint(s, "fruit_subdivisions"); - if (fruit_subdivisions != nullvalue_i) { - strawberryparameters.fruit_subdivisions = uint(fruit_subdivisions); - } + shoot_subdivisions = 10; - std::string fruit_texture_file = XMLloadstring(s, "fruit_texture_file"); - if ( fruit_texture_file != nullvalue_s ) { - strawberryparameters.fruit_texture_file = fruit_texture_file; - } + stem_radius = 0.004; - float plant_spacing = XMLloadfloat(s, "plant_spacing"); - if (plant_spacing != nullvalue_f) { - strawberryparameters.plant_spacing = plant_spacing; - } + stem_length = 0.075; - float row_spacing = XMLloadfloat(s, "row_spacing"); - if (row_spacing != nullvalue_f) { - strawberryparameters.row_spacing = row_spacing; - } + leaflet_length = 0.075; - int2 plant_count = XMLloadint2(s, "plant_count"); - if (plant_count.x != nullvalue_i && plant_count.y != nullvalue_i) { - strawberryparameters.plant_count = plant_count; - } + pod_length = 0; //pods not supported yet - vec3 canopy_origin = XMLloadvec3(s, "canopy_origin"); - if (canopy_origin.x != nullvalue_f && canopy_origin.y != nullvalue_f) { - strawberryparameters.canopy_origin = canopy_origin; - } + pod_color = make_RGBcolor(0.7, 0.28, 0.2); - float canopy_rotation = XMLloadfloat(s, "canopy_rotation"); - if (canopy_rotation != nullvalue_f) { - strawberryparameters.canopy_rotation = canopy_rotation; - } + pod_subdivisions = 8; + plant_spacing = 0.15; - buildCanopy(strawberryparameters); + row_spacing = 0.6; - } + plant_count = make_int2(3, 3); - //TomatoParameters Canopy - for (pugi::xml_node s = cgen.child("TomatoParameters"); s; s = s.next_sibling("TomatoParameters")) { + germination_probability = 1.f; - TomatoParameters tomatoparameters; +} - float leaf_length = XMLloadfloat(s, "leaf_length"); - if (leaf_length != nullvalue_f) { - tomatoparameters.leaf_length = leaf_length; - } +BeanParameters::BeanParameters(const pugi::xml_node canopy_node) : BeanParameters(){ + readParametersFromXML(canopy_node); +} - int2 leaf_subdivisions = XMLloadint2(s, "leaf_subdivisions"); - if (leaf_subdivisions.x != nullvalue_i && leaf_subdivisions.y != nullvalue_i) { - tomatoparameters.leaf_subdivisions = leaf_subdivisions; - } +void BeanParameters::readParametersFromXML(const pugi::xml_node canopy_node){ + BaseCanopyParameters::readParametersFromXML(canopy_node); - std::string leaf_texture_file = XMLloadstring(s, "leaf_texture_file"); - if ( leaf_texture_file != nullvalue_s ) { - tomatoparameters.leaf_texture_file = leaf_texture_file; - } + float new_leaf_length = XMLloadfloat(canopy_node, "leaf_length"); + if (new_leaf_length != nullvalue_f) { + leaf_length = new_leaf_length; + } - RGBAcolor shoot_color = XMLloadrgba(s, "shoot_color"); - if (shoot_color.a != 0 ) { - tomatoparameters.shoot_color = make_RGBcolor(shoot_color.r,shoot_color.g,shoot_color.b); - } + int2 new_leaf_subdivisions = XMLloadint2(canopy_node, "leaf_subdivisions"); + if (new_leaf_subdivisions.x != nullvalue_i && new_leaf_subdivisions.y != nullvalue_i) { + leaf_subdivisions = new_leaf_subdivisions; + } - int shoot_subdivisions = XMLloadint(s, "shoot_subdivisions"); - if (shoot_subdivisions != nullvalue_i) { - tomatoparameters.shoot_subdivisions = shoot_subdivisions; - } + std::string new_leaf_texture_file = XMLloadstring(canopy_node, "leaf_texture_file"); + if ( new_leaf_texture_file != nullvalue_s ) { + leaf_texture_file = new_leaf_texture_file; + } - float h = XMLloadfloat(s, "plant_height"); - if (h != nullvalue_f) { - tomatoparameters.plant_height = h; - } + int new_shoot_subdivisions = XMLloadint(canopy_node, "shoot_subdivisions"); + if (new_shoot_subdivisions != nullvalue_i) { + shoot_subdivisions = new_shoot_subdivisions; + } - float gr = XMLloadfloat(s, "fruit_radius"); - if (gr != nullvalue_f) { - tomatoparameters.fruit_radius = gr; - } + float new_stem_radius = XMLloadfloat(canopy_node, "stem_radius"); + if (new_stem_radius != nullvalue_f) { + stem_radius = new_stem_radius; + } - RGBAcolor fruit_color = XMLloadrgba(s, "fruit_color"); - if (fruit_color.a != 0 ) { - tomatoparameters.fruit_color = make_RGBcolor(fruit_color.r,fruit_color.g,fruit_color.b); - } + RGBAcolor new_shoot_color = XMLloadrgba(canopy_node, "shoot_color"); + if( new_shoot_color.a != 0 ){ + shoot_color = make_RGBcolor(new_shoot_color.r, new_shoot_color.g, new_shoot_color.b); + } + float new_stem_length = XMLloadfloat(canopy_node, "stem_length"); + if (new_stem_length != nullvalue_f ) { + stem_length = new_stem_length; + } - int fruit_subdivisions = XMLloadint(s, "fruit_subdivisions"); - if (fruit_subdivisions != nullvalue_i) { - tomatoparameters.fruit_subdivisions = uint(fruit_subdivisions); - } + float new_leaflet_length = XMLloadfloat(canopy_node, "leaflet_length"); + if (new_leaflet_length != nullvalue_f ) { + leaflet_length = new_leaflet_length; + } - float plant_spacing = XMLloadfloat(s, "plant_spacing"); - if (plant_spacing != nullvalue_f) { - tomatoparameters.plant_spacing = plant_spacing; - } + float new_pod_length = XMLloadfloat(canopy_node, "pod_length"); + if (new_pod_length != nullvalue_f ) { + pod_length = new_pod_length; + } - float row_spacing = XMLloadfloat(s, "row_spacing"); - if (row_spacing != nullvalue_f) { - tomatoparameters.row_spacing = row_spacing; - } + RGBAcolor new_pod_color = XMLloadrgba(canopy_node, "pod_color"); + if( new_pod_color.a != 0 ){ + pod_color = make_RGBcolor(new_pod_color.r, new_pod_color.g, new_pod_color.b); + } - int2 plant_count = XMLloadint2(s, "plant_count"); - if (plant_count.x != nullvalue_i && plant_count.y != nullvalue_i) { - tomatoparameters.plant_count = plant_count; - } + int new_pod_subdivisions = XMLloadint(canopy_node, "pod_subdivisions"); + if (new_pod_subdivisions != nullvalue_i ) { + pod_subdivisions = new_pod_subdivisions; + } - vec3 canopy_origin = XMLloadvec3(s, "canopy_origin"); - if (canopy_origin.x != nullvalue_f && canopy_origin.y != nullvalue_f) { - tomatoparameters.canopy_origin = canopy_origin; - } + float new_plant_spacing = XMLloadfloat(canopy_node, "plant_spacing"); + if (new_plant_spacing != nullvalue_f) { + plant_spacing = new_plant_spacing; + } - float canopy_rotation = XMLloadfloat(s, "canopy_rotation"); - if (canopy_rotation != nullvalue_f) { - tomatoparameters.canopy_rotation = canopy_rotation; - } + float new_row_spacing = XMLloadfloat(canopy_node, "row_spacing"); + if (new_row_spacing != nullvalue_f) { + row_spacing = new_row_spacing; + } + int2 new_plant_count = XMLloadint2(canopy_node, "plant_count"); + if (new_plant_count.x != nullvalue_i && new_plant_count.y != nullvalue_i) { + plant_count = new_plant_count; + } - buildCanopy(tomatoparameters); + float new_germination_probability = XMLloadfloat(canopy_node, "germination_probability"); + if (new_germination_probability != nullvalue_f) { + germination_probability = new_germination_probability; + } +} - } +void BeanParameters::buildPlant(CanopyGenerator& canopy_generator, helios::vec3 origin){ + canopy_generator.bean(*this, origin); +} - //WalnutCanopyParameters Canopy - for (pugi::xml_node s = cgen.child("WalnutCanopyParameters"); s; s = s.next_sibling("WalnutCanopyParameters")) { +void BeanParameters::buildCanopy(CanopyGenerator& canopy_generator){ + canopy_generator.buildCanopy(*this); +} - WalnutCanopyParameters walnutcanopyparameters; + CanopyGenerator::CanopyGenerator( helios::Context* m_context ){ - float leaf_length = XMLloadfloat(s, "leaf_length"); - if (leaf_length != nullvalue_f) { - walnutcanopyparameters.leaf_length = leaf_length; - } + context = m_context; - int2 leaf_subdivisions = XMLloadint2(s, "leaf_subdivisions"); - if (leaf_subdivisions.x != nullvalue_i && leaf_subdivisions.y != nullvalue_i) { - walnutcanopyparameters.leaf_subdivisions = leaf_subdivisions; - } + //seed the random number generator + unsigned seed = std::chrono::system_clock::now().time_since_epoch().count(); + generator.seed(seed); - std::string leaf_texture_file = XMLloadstring(s, "leaf_texture_file"); - if ( leaf_texture_file != nullvalue_s ) { - walnutcanopyparameters.leaf_texture_file = leaf_texture_file; - } + printmessages = true; - int wood_subdivisions = XMLloadint(s, "wood_subdivisions"); - if (wood_subdivisions != nullvalue_i) { - walnutcanopyparameters.wood_subdivisions = wood_subdivisions; - } + enable_element_labels = false; +} - float trunk_radius = XMLloadfloat(s, "trunk_radius"); - if (trunk_radius != nullvalue_f) { - walnutcanopyparameters.trunk_radius = trunk_radius; - } +int CanopyGenerator::selfTest(){ - float trunk_height = XMLloadfloat(s, "trunk_height"); - if (trunk_height != nullvalue_f) { - walnutcanopyparameters.trunk_height = trunk_height; - } + std::cout << "Running canopy generator plug-in self-test..." << std::endl; - vec3 branch_length = XMLloadvec3(s, "branch_length"); - if (branch_length.x != nullvalue_f && branch_length.y != nullvalue_f) { - walnutcanopyparameters.branch_length = branch_length; - } + Context context_test; - std::string fruit_texture_file = XMLloadstring(s, "fruit_texture_file"); - if ( fruit_texture_file != nullvalue_s ) { - walnutcanopyparameters.fruit_texture_file = fruit_texture_file; - } + std::cout << "Generating default homogeneous canopy..." << std::flush; - int fruit_subdivisions = XMLloadint(s, "fruit_subdivisions"); - if (fruit_subdivisions != nullvalue_i) { - walnutcanopyparameters.fruit_subdivisions = uint(fruit_subdivisions); - } + CanopyGenerator canopygenerator_0(&context_test); + canopygenerator_0.disableMessages(); + HomogeneousCanopyParameters params_0; + canopygenerator_0.buildCanopy(params_0); + context_test.deletePrimitive(context_test.getAllUUIDs()); - float plant_spacing = XMLloadfloat(s, "plant_spacing"); - if (plant_spacing != nullvalue_f) { - walnutcanopyparameters.plant_spacing = plant_spacing; - } + std::cout << "done." << std::endl; - float row_spacing = XMLloadfloat(s, "row_spacing"); - if (row_spacing != nullvalue_f) { - walnutcanopyparameters.row_spacing = row_spacing; - } + std::cout << "Generating default spherical crowns canopy..." << std::flush; - int2 plant_count = XMLloadint2(s, "plant_count"); - if (plant_count.x != nullvalue_i && plant_count.y != nullvalue_i) { - walnutcanopyparameters.plant_count = plant_count; - } + CanopyGenerator canopygenerator_1(&context_test); + canopygenerator_1.disableMessages(); + SphericalCrownsCanopyParameters params_1; + canopygenerator_1.buildCanopy(params_1); + context_test.deletePrimitive(context_test.getAllUUIDs()); - vec3 canopy_origin = XMLloadvec3(s, "canopy_origin"); - if (canopy_origin.x != nullvalue_f && canopy_origin.y != nullvalue_f) { - walnutcanopyparameters.canopy_origin = canopy_origin; - } + std::cout << "done." << std::endl; - float canopy_rotation = XMLloadfloat(s, "canopy_rotation"); - if (canopy_rotation != nullvalue_f) { - walnutcanopyparameters.canopy_rotation = canopy_rotation; - } + std::cout << "Generating default VSP grapevine canopy..." << std::flush; + CanopyGenerator canopygenerator_2(&context_test); + canopygenerator_2.disableMessages(); + VSPGrapevineParameters params_2; + params_2.grape_radius = 0; + canopygenerator_2.buildCanopy(params_2); + context_test.deletePrimitive(context_test.getAllUUIDs()); - buildCanopy(walnutcanopyparameters); + std::cout << "done." << std::endl; - } + std::cout << "Generating default split trellis grapevine canopy..." << std::flush; - //SorghumCanopyParameters Canopy - for (pugi::xml_node s = cgen.child("SorghumCanopyParameters"); s; s = s.next_sibling("SorghumCanopyParameters")) { + CanopyGenerator canopygenerator_3(&context_test); + canopygenerator_3.disableMessages(); + SplitGrapevineParameters params_3; + params_3.grape_radius = 0; + canopygenerator_3.buildCanopy(params_3); + context_test.deletePrimitive(context_test.getAllUUIDs()); - SorghumCanopyParameters sorghumcanopyparameters; + std::cout << "done." << std::endl; - int sorghum_stage = XMLloadint(s, "sorghum_stage"); - if (sorghum_stage != nullvalue_i) { - sorghumcanopyparameters.sorghum_stage = sorghum_stage; - } - // STAGE 1 - float s1_stem_length = XMLloadint(s, "s1_stem_length"); - if (s1_stem_length != nullvalue_i) { - sorghumcanopyparameters.s1_stem_length = s1_stem_length; - } + std::cout << "Generating default unilateral trellis grapevine canopy..." << std::flush; - float s1_stem_radius = XMLloadfloat(s, "s1_stem_radius"); - if (s1_stem_radius != nullvalue_f) { - sorghumcanopyparameters.s1_stem_radius = s1_stem_radius; - } + CanopyGenerator canopygenerator_4(&context_test); + canopygenerator_4.disableMessages(); + UnilateralGrapevineParameters params_4; + params_4.grape_radius = 0; + canopygenerator_4.buildCanopy(params_4); + context_test.deletePrimitive(context_test.getAllUUIDs()); - int s1_stem_subdivisions = XMLloadint(s, "s1_stem_subdivisions"); - if (s1_stem_subdivisions != nullvalue_f) { - sorghumcanopyparameters.s1_stem_subdivisions = uint(s1_stem_subdivisions); - } + std::cout << "done." << std::endl; - vec2 s1_leaf_size1 = XMLloadvec2(s, "s1_leaf_size1"); - if (s1_leaf_size1.x != nullvalue_f && s1_leaf_size1.y != nullvalue_f) { - sorghumcanopyparameters.s1_leaf_size1 = s1_leaf_size1; - } + std::cout << "Generating default goblet trellis grapevine canopy..." << std::flush; - vec2 s1_leaf_size2 = XMLloadvec2(s, "s1_leaf_size2"); - if (s1_leaf_size2.x != nullvalue_f && s1_leaf_size2.y != nullvalue_f) { - sorghumcanopyparameters.s1_leaf_size2 = s1_leaf_size2; - } + CanopyGenerator canopygenerator_5(&context_test); + canopygenerator_5.disableMessages(); + GobletGrapevineParameters params_5; + params_5.grape_radius = 0; + canopygenerator_5.buildCanopy(params_5); + context_test.deletePrimitive(context_test.getAllUUIDs()); - vec2 s1_leaf_size3 = XMLloadvec2(s, "s1_leaf_size3"); - if (s1_leaf_size3.x != nullvalue_f && s1_leaf_size3.y != nullvalue_f) { - sorghumcanopyparameters.s1_leaf_size3 = s1_leaf_size3; - } + std::cout << "done." << std::endl; - float s1_leaf1_angle = XMLloadfloat(s, "s1_leaf1_angle"); - if (s1_leaf1_angle != nullvalue_f) { - sorghumcanopyparameters.s1_leaf1_angle = s1_leaf1_angle; - } + std::cout << "Generating default strawberry canopy..." << std::flush; - float s1_leaf2_angle = XMLloadfloat(s, "s1_leaf2_angle"); - if (s1_leaf2_angle != nullvalue_f) { - sorghumcanopyparameters.s1_leaf2_angle = s1_leaf2_angle; - } + CanopyGenerator canopygenerator_7(&context_test); + canopygenerator_7.disableMessages(); + StrawberryParameters params_7; + canopygenerator_7.buildCanopy(params_7); + context_test.deletePrimitive(context_test.getAllUUIDs()); - float s1_leaf3_angle = XMLloadfloat(s, "s1_leaf3_angle"); - if (s1_leaf3_angle != nullvalue_f) { - sorghumcanopyparameters.s1_leaf3_angle = s1_leaf3_angle; - } + std::cout << "done." << std::endl; - int2 s1_leaf_subdivisions = XMLloadint2(s, "s1_leaf_subdivisions"); - if (s1_leaf_subdivisions.x != nullvalue_i && s1_leaf_subdivisions.y != nullvalue_i) { - sorghumcanopyparameters.s1_leaf_subdivisions = s1_leaf_subdivisions; - } + std::cout << "Generating default walnut tree canopy (minus nuts)..." << std::flush; - std::string s1_leaf_texture_file = XMLloadstring(s, "s1_leaf_texture_file"); - if (s1_leaf_texture_file.compare(nullvalue_s) != 0) { - sorghumcanopyparameters.s1_leaf_texture_file = s1_leaf_texture_file; - } - // STAGE 2 - float s2_stem_length = XMLloadint(s, "s2_stem_length"); - if (s2_stem_length != nullvalue_i) { - sorghumcanopyparameters.s2_stem_length = s2_stem_length; - } + CanopyGenerator canopygenerator_8(&context_test); + canopygenerator_8.disableMessages(); + WalnutCanopyParameters params_8; + params_8.fruit_radius = 0.f; + canopygenerator_8.buildCanopy(params_8); + context_test.deletePrimitive(context_test.getAllUUIDs()); - float s2_stem_radius = XMLloadfloat(s, "s2_stem_radius"); - if (s2_stem_radius != nullvalue_f) { - sorghumcanopyparameters.s2_stem_radius = s2_stem_radius; - } + std::cout << "done." << std::endl; - int s2_stem_subdivisions = XMLloadint(s, "s2_stem_subdivisions"); - if (s2_stem_subdivisions != nullvalue_f) { - sorghumcanopyparameters.s2_stem_subdivisions = uint(s2_stem_subdivisions); - } + std::cout << "Generating default sorghum plant canopy..." << std::flush; - vec2 s2_leaf_size1 = XMLloadvec2(s, "s2_leaf_size1"); - if (s2_leaf_size1.x != nullvalue_f && s2_leaf_size1.y != nullvalue_f) { - sorghumcanopyparameters.s2_leaf_size1 = s2_leaf_size1; - } + CanopyGenerator canopygenerator_9(&context_test); + canopygenerator_9.disableMessages(); + SorghumCanopyParameters params_9; + canopygenerator_9.buildCanopy(params_9); + context_test.deletePrimitive( context_test.getAllUUIDs() ); - vec2 s2_leaf_size2 = XMLloadvec2(s, "s2_leaf_size2"); - if (s2_leaf_size2.x != nullvalue_f && s2_leaf_size2.y != nullvalue_f) { - sorghumcanopyparameters.s2_leaf_size2 = s2_leaf_size2; - } + std::cout << "done." << std::endl; - vec2 s2_leaf_size3 = XMLloadvec2(s, "s2_leaf_size3"); - if (s2_leaf_size3.x != nullvalue_f && s2_leaf_size3.y != nullvalue_f) { - sorghumcanopyparameters.s2_leaf_size3 = s2_leaf_size3; - } + std::cout << "Generating homogeneous canopy with randomly deleted primitives..." << std::flush; - vec2 s2_leaf_size4 = XMLloadvec2(s, "s2_leaf_size4"); - if (s2_leaf_size4.x != nullvalue_f && s2_leaf_size4.y != nullvalue_f) { - sorghumcanopyparameters.s2_leaf_size4 = s2_leaf_size4; - } + CanopyGenerator canopygenerator_6(&context_test); + canopygenerator_6.disableMessages(); + HomogeneousCanopyParameters params_6; + canopygenerator_6.buildCanopy(params_6); - vec2 s2_leaf_size5 = XMLloadvec2(s, "s2_leaf_size5"); - if (s2_leaf_size5.x != nullvalue_f && s2_leaf_size5.y != nullvalue_f) { - sorghumcanopyparameters.s2_leaf_size5 = s2_leaf_size5; - } + std::vector UUIDs_leaves = flatten( canopygenerator_6.getLeafUUIDs(0) ); - float s2_leaf1_angle = XMLloadfloat(s, "s2_leaf1_angle"); - if (s2_leaf1_angle != nullvalue_f) { - sorghumcanopyparameters.s2_leaf1_angle = s2_leaf1_angle; - } + context_test.deletePrimitive(UUIDs_leaves.at(0)); + context_test.deletePrimitive(UUIDs_leaves.at(11)); + context_test.deletePrimitive(UUIDs_leaves.at(23)); + context_test.deletePrimitive(UUIDs_leaves.back()); - float s2_leaf2_angle = XMLloadfloat(s, "s2_leaf2_angle"); - if (s2_leaf2_angle != nullvalue_f) { - sorghumcanopyparameters.s2_leaf2_angle = s2_leaf2_angle; - } + UUIDs_leaves = flatten( canopygenerator_6.getLeafUUIDs(0) ); - float s2_leaf3_angle = XMLloadfloat(s, "s2_leaf3_angle"); - if (s2_leaf3_angle != nullvalue_f) { - sorghumcanopyparameters.s2_leaf3_angle = s2_leaf3_angle; - } + bool fail_flag = false; + for( uint UUID : UUIDs_leaves ){ + if( !context_test.doesPrimitiveExist( UUID ) ){ + fail_flag = true; + } + } - float s2_leaf4_angle = XMLloadfloat(s, "s2_leaf4_angle"); - if (s2_leaf4_angle != nullvalue_f) { - sorghumcanopyparameters.s2_leaf4_angle = s2_leaf4_angle; - } + std::vector UUIDs_all = canopygenerator_6.getAllUUIDs(0); - float s2_leaf5_angle = XMLloadfloat(s, "s2_leaf5_angle"); - if (s2_leaf3_angle != nullvalue_f) { - sorghumcanopyparameters.s2_leaf5_angle = s2_leaf5_angle; - } + fail_flag = false; + for( uint p : UUIDs_all ){ + if( !context_test.doesPrimitiveExist( p ) ){ + fail_flag = true; + } + } - int2 s2_leaf_subdivisions = XMLloadint2(s, "s2_leaf_subdivisions"); - if (s2_leaf_subdivisions.x != nullvalue_i && s2_leaf_subdivisions.y != nullvalue_i) { - sorghumcanopyparameters.s2_leaf_subdivisions = s2_leaf_subdivisions; - } + context_test.deletePrimitive(context_test.getAllUUIDs()); - std::string s2_leaf_texture_file = XMLloadstring(s, "s2_leaf_texture_file"); - if (s2_leaf_texture_file.compare(nullvalue_s) != 0) { - sorghumcanopyparameters.s2_leaf_texture_file = s2_leaf_texture_file; - } - // STAGE 3 - float s3_stem_length = XMLloadint(s, "s3_stem_length"); - if (s3_stem_length != nullvalue_i) { - sorghumcanopyparameters.s3_stem_length = s3_stem_length; - } + std::cout << "done." << std::endl; - float s3_stem_radius = XMLloadfloat(s, "s3_stem_radius"); - if (s3_stem_radius != nullvalue_f) { - sorghumcanopyparameters.s3_stem_radius = s3_stem_radius; - } + if( fail_flag ){ + std::cout << "failed." << std::endl; + return 1; + }else{ + std::cout << "passed." << std::endl; + return 0; + } - int s3_stem_subdivisions = XMLloadint(s, "s3_stem_subdivisions"); - if (s3_stem_subdivisions != nullvalue_f) { - sorghumcanopyparameters.s3_stem_subdivisions = uint(s3_stem_subdivisions); - } +} - vec2 s3_leaf_size = XMLloadvec2(s, "s3_leaf_size"); - if (s3_leaf_size.x != nullvalue_f && s3_leaf_size.y != nullvalue_f) { - sorghumcanopyparameters.s3_leaf_size = s3_leaf_size; - } +template +void CanopyGenerator::storeCanopyParameters(Args&&... args){ + static_assert(std::is_base_of::value, "CanopyType must inherit from BaseCanopyParameters"); + canopy_parameters_list.push_back(std::make_shared(std::forward(args)...)); +} - int2 s3_leaf_subdivisions = XMLloadint2(s, "s3_leaf_subdivisions"); - if (s3_leaf_subdivisions.x != nullvalue_i && s3_leaf_subdivisions.y != nullvalue_i) { - sorghumcanopyparameters.s3_leaf_subdivisions = s3_leaf_subdivisions; - } +std::vector> CanopyGenerator::getCanopyParametersList(){ + std::vector> params_list; + for (const auto& params : canopy_parameters_list) { + params_list.push_back(params); + } + return params_list; +} - int s3_number_of_leaves = XMLloadint(s, "s3_number_of_leaves"); - if (s3_number_of_leaves != nullvalue_i) { - sorghumcanopyparameters.s3_number_of_leaves = s3_number_of_leaves; - } +void CanopyGenerator::loadXML( const char* filename, bool build ){ - float s3_mean_leaf_angle = XMLloadfloat(s, "s3_mean_leaf_angle"); - if (s3_mean_leaf_angle != nullvalue_f) { - sorghumcanopyparameters.s3_mean_leaf_angle = s3_mean_leaf_angle; - } + if( printmessages ){ + std::cout << "Reading XML file: " << filename << "..." << std::flush; + } - std::string s3_leaf_texture_file = XMLloadstring(s, "s3_leaf_texture_file"); - if (s3_leaf_texture_file.compare(nullvalue_s) != 0) { - sorghumcanopyparameters.s3_leaf_texture_file = s3_leaf_texture_file; - } + //Check if file exists + std::ifstream f(filename); + if( !f.good() ){ + std::cerr << "failed." << std::endl; + throw( std::runtime_error("XML file " + std::string(filename) + " does not exist.") ); + } - // STAGE 4 - float s4_stem_length = XMLloadint(s, "s4_stem_length"); - if (s4_stem_length != nullvalue_i) { - sorghumcanopyparameters.s4_stem_length = s4_stem_length; - } + // Using "pugixml" parser. See pugixml.org + pugi::xml_document xmldoc; - float s4_stem_radius = XMLloadfloat(s, "s4_stem_radius"); - if (s4_stem_radius != nullvalue_f) { - sorghumcanopyparameters.s4_stem_radius = s4_stem_radius; - } + //load file + pugi::xml_parse_result result = xmldoc.load_file(filename); - int s4_stem_subdivisions = XMLloadint(s, "s4_stem_subdivisions"); - if (s4_stem_subdivisions != nullvalue_f) { - sorghumcanopyparameters.s4_stem_subdivisions = uint(s4_stem_subdivisions); - } + //error checking + if (!result){ + std::cout << "failed." << std::endl; + throw( std::runtime_error("XML file " + std::string(filename) + " parsed with errors, attribute value: [" + xmldoc.child("node").attribute("attr").value() + "]\nError description: " + result.description() + "\n")); + } - vec2 s4_panicle_size = XMLloadvec2(s, "s4_panicle_size"); - if (s4_panicle_size.x != nullvalue_f && s4_panicle_size.y != nullvalue_f) { - sorghumcanopyparameters.s4_panicle_size = s4_panicle_size; - } + pugi::xml_node helios = xmldoc.child("helios"); - int s4_panicle_subdivisions = XMLloadint(s, "s4_panicle_subdivisions"); - if (s4_panicle_subdivisions != nullvalue_f) { - sorghumcanopyparameters.s4_panicle_subdivisions = uint(s4_panicle_subdivisions); - } + if( helios.empty() ){ + std::cout << "failed." << std::endl; + throw(std::runtime_error("ERROR (loadXML): XML file must have tag ' ... ' bounding all other tags.")); + } - std::string s4_seed_texture_file = XMLloadstring(s, "s4_seed_texture_file"); - if (s4_seed_texture_file.compare(nullvalue_s) != 0) { - sorghumcanopyparameters.s4_seed_texture_file = s4_seed_texture_file; - } + //looping over any Canopy Generator blocks specified in XML file + for (pugi::xml_node cgen = helios.child("canopygenerator"); cgen; cgen = cgen.next_sibling("CanopyGenerator")) { - vec2 s4_leaf_size = XMLloadvec2(s, "s4_leaf_size"); - if (s4_leaf_size.x != nullvalue_f && s4_leaf_size.y != nullvalue_f) { - sorghumcanopyparameters.s4_leaf_size = s4_leaf_size; - } + //looping over any canopy types specified - int2 s4_leaf_subdivisions = XMLloadint2(s, "s4_leaf_subdivisions"); - if (s4_leaf_subdivisions.x != nullvalue_i && s4_leaf_subdivisions.y != nullvalue_i) { - sorghumcanopyparameters.s4_leaf_subdivisions = s4_leaf_subdivisions; - } + //Homogeneous Canopy + for (pugi::xml_node s = cgen.child("HomogeneousCanopyParameters"); s; s = s.next_sibling( + "HomogeneousCanopyParameters")) { - int s4_number_of_leaves = XMLloadint(s, "s4_number_of_leaves"); - if (s4_number_of_leaves != nullvalue_i) { - sorghumcanopyparameters.s4_number_of_leaves = s4_number_of_leaves; - } + HomogeneousCanopyParameters homogeneouscanopyparameters(s); + storeCanopyParameters(homogeneouscanopyparameters); + if (build) + buildCanopy(homogeneouscanopyparameters); - float s4_mean_leaf_angle = XMLloadfloat(s, "s4_mean_leaf_angle"); - if (s4_mean_leaf_angle != nullvalue_f) { - sorghumcanopyparameters.s4_mean_leaf_angle = s4_mean_leaf_angle; - } + } - std::string s4_leaf_texture_file = XMLloadstring(s, "s4_leaf_texture_file"); - if (s4_leaf_texture_file.compare(nullvalue_s) != 0) { - sorghumcanopyparameters.s4_leaf_texture_file = s4_leaf_texture_file; - } + //Spherical Canopy + for (pugi::xml_node s = cgen.child("SphericalCrownsCanopyParameters"); s; s = s.next_sibling("SphericalCrownsCanopyParameters")) { - // STAGE 5 - float s5_stem_length = XMLloadint(s, "s5_stem_length"); - if (s5_stem_length != nullvalue_i) { - sorghumcanopyparameters.s5_stem_length = s5_stem_length; - } + SphericalCrownsCanopyParameters sphericalcrownscanopyparameters(s); + storeCanopyParameters(sphericalcrownscanopyparameters); + if (build) + buildCanopy(sphericalcrownscanopyparameters); - float s5_stem_radius = XMLloadfloat(s, "s5_stem_radius"); - if (s5_stem_radius != nullvalue_f) { - sorghumcanopyparameters.s5_stem_radius = s5_stem_radius; - } + } - float s5_stem_bend = XMLloadfloat(s, "s5_stem_bend"); - if (s5_stem_bend != nullvalue_f) { - sorghumcanopyparameters.s5_stem_bend = s5_stem_bend; - } + //Conical Canopy + for (pugi::xml_node s = cgen.child("ConicalCrownsCanopyParameters"); s; s = s.next_sibling("ConicalCrownsCanopyParameters")) { - int s5_stem_subdivisions = XMLloadint(s, "s5_stem_subdivisions"); - if (s5_stem_subdivisions != nullvalue_f) { - sorghumcanopyparameters.s5_stem_subdivisions = uint(s5_stem_subdivisions); - } + ConicalCrownsCanopyParameters conicalcrownscanopyparameters(s); + storeCanopyParameters(conicalcrownscanopyparameters); + if (build) + buildCanopy(conicalcrownscanopyparameters); - vec2 s5_panicle_size = XMLloadvec2(s, "s5_panicle_size"); - if (s5_panicle_size.x != nullvalue_f && s5_panicle_size.y != nullvalue_f) { - sorghumcanopyparameters.s5_panicle_size = s5_panicle_size; - } + } - int s5_panicle_subdivisions = XMLloadint(s, "s5_panicle_subdivisions"); - if (s5_panicle_subdivisions != nullvalue_f) { - sorghumcanopyparameters.s5_panicle_subdivisions = uint(s5_panicle_subdivisions); - } - std::string s5_seed_texture_file = XMLloadstring(s, "s5_seed_texture_file"); - if (s5_seed_texture_file.compare(nullvalue_s) != 0) { - sorghumcanopyparameters.s5_seed_texture_file = s5_seed_texture_file; - } + //VSP Grapevine Canopy + for (pugi::xml_node s = cgen.child("VSPGrapevineParameters"); s; s = s.next_sibling("VSPGrapevineParameters")) { - vec2 s5_leaf_size = XMLloadvec2(s, "s5_leaf_size"); - if (s5_leaf_size.x != nullvalue_f && s5_leaf_size.y != nullvalue_f) { - sorghumcanopyparameters.s5_leaf_size = s5_leaf_size; - } + VSPGrapevineParameters vspgrapevineparameters(s); + storeCanopyParameters(vspgrapevineparameters); + if (build) + buildCanopy(vspgrapevineparameters); - int2 s5_leaf_subdivisions = XMLloadint2(s, "s5_leaf_subdivisions"); - if (s5_leaf_subdivisions.x != nullvalue_i && s5_leaf_subdivisions.y != nullvalue_i) { - sorghumcanopyparameters.s5_leaf_subdivisions = s5_leaf_subdivisions; - } + } - int s5_number_of_leaves = XMLloadint(s, "s5_number_of_leaves"); - if (s5_number_of_leaves != nullvalue_i) { - sorghumcanopyparameters.s5_number_of_leaves = s5_number_of_leaves; - } + //Split Grapevine Canopy + for (pugi::xml_node s = cgen.child("SplitGrapevineParameters"); s; s = s.next_sibling( + "SplitGrapevineParameters")) { - float s5_mean_leaf_angle = XMLloadfloat(s, "s5_mean_leaf_angle"); - if (s5_mean_leaf_angle != nullvalue_f) { - sorghumcanopyparameters.s5_mean_leaf_angle = s5_mean_leaf_angle; - } + SplitGrapevineParameters splitgrapevineparameters(s); + storeCanopyParameters(splitgrapevineparameters); + if (build) + buildCanopy(splitgrapevineparameters); - std::string s5_leaf_texture_file = XMLloadstring(s, "s5_leaf_texture_file"); - if (s5_leaf_texture_file.compare(nullvalue_s) != 0) { - sorghumcanopyparameters.s5_leaf_texture_file = s5_leaf_texture_file; - } + } - float plant_spacing = XMLloadfloat(s, "plant_spacing"); - if (plant_spacing != nullvalue_f) { - sorghumcanopyparameters.plant_spacing = plant_spacing; - } - float row_spacing = XMLloadfloat(s, "row_spacing"); - if (row_spacing != nullvalue_f) { - sorghumcanopyparameters.row_spacing = row_spacing; - } + //UnilateralGrapevineParameters Canopy + for (pugi::xml_node s = cgen.child("UnilateralGrapevineParameters"); s; s = s.next_sibling( + "UnilateralGrapevineParameters")) { - int2 plant_count = XMLloadint2(s, "plant_count"); - if (plant_count.x != nullvalue_i && plant_count.y != nullvalue_i) { - sorghumcanopyparameters.plant_count = plant_count; - } + UnilateralGrapevineParameters unilateralgrapevineparameters(s); + storeCanopyParameters(unilateralgrapevineparameters); + if (build) + buildCanopy(unilateralgrapevineparameters); - vec3 canopy_origin = XMLloadvec3(s, "canopy_origin"); - if (canopy_origin.x != nullvalue_f && canopy_origin.y != nullvalue_f) { - sorghumcanopyparameters.canopy_origin = canopy_origin; - } + } - buildCanopy(sorghumcanopyparameters); - } + //GobletGrapevineParameters Canopy + for (pugi::xml_node s = cgen.child("GobletGrapevineParameters"); s; s = s.next_sibling( + "GobletGrapevineParameters")) { - //BeanParameters Canopy - for (pugi::xml_node s = cgen.child("BeanParameters"); s; s = s.next_sibling("BeanParameters")) { + GobletGrapevineParameters gobletgrapevineparameters(s); + storeCanopyParameters(gobletgrapevineparameters); + if (build) + buildCanopy(gobletgrapevineparameters); - BeanParameters beanparameters; + } - float leaf_length = XMLloadfloat(s, "leaf_length"); - if (leaf_length != nullvalue_f) { - beanparameters.leaf_length = leaf_length; - } - int2 leaf_subdivisions = XMLloadint2(s, "leaf_subdivisions"); - if (leaf_subdivisions.x != nullvalue_i && leaf_subdivisions.y != nullvalue_i) { - beanparameters.leaf_subdivisions = leaf_subdivisions; - } + //WhiteSpruceCanopyParameters Canopy + for (pugi::xml_node s = cgen.child("WhiteSpruceCanopyParameters"); s; s = s.next_sibling("WhiteSpruceCanopyParameters")) { - std::string leaf_texture_file = XMLloadstring(s, "leaf_texture_file"); - if ( leaf_texture_file != nullvalue_s ) { - beanparameters.leaf_texture_file = leaf_texture_file; - } + WhiteSpruceCanopyParameters whitesprucecanopyparameters(s); + storeCanopyParameters(whitesprucecanopyparameters); + if (build) + buildCanopy(whitesprucecanopyparameters); - int shoot_subdivisions = XMLloadint(s, "shoot_subdivisions"); - if (shoot_subdivisions != nullvalue_i) { - beanparameters.shoot_subdivisions = shoot_subdivisions; - } + } - float stem_radius = XMLloadfloat(s, "stem_radius"); - if (stem_radius != nullvalue_f) { - beanparameters.stem_radius = stem_radius; - } + //StrawberryParameters Canopy + for (pugi::xml_node s = cgen.child("StrawberryParameters"); s; s = s.next_sibling("StrawberryParameters")) { - RGBAcolor shoot_color = XMLloadrgba(s, "shoot_color"); - if( shoot_color.a != 0 ){ - beanparameters.shoot_color = make_RGBcolor(shoot_color.r,shoot_color.g,shoot_color.b); - } + StrawberryParameters strawberryparameters(s); + storeCanopyParameters(strawberryparameters); + if (build) + buildCanopy(strawberryparameters); - float stem_length = XMLloadfloat(s, "stem_length"); - if (stem_length != nullvalue_f ) { - beanparameters.stem_length = stem_length; - } + } - float leaflet_length = XMLloadfloat(s, "leaflet_length"); - if (leaflet_length != nullvalue_f ) { - beanparameters.leaflet_length = leaflet_length; - } + //TomatoParameters Canopy + for (pugi::xml_node s = cgen.child("TomatoParameters"); s; s = s.next_sibling("TomatoParameters")) { - float pod_length = XMLloadfloat(s, "pod_length"); - if (pod_length != nullvalue_f ) { - beanparameters.pod_length = pod_length; - } + TomatoParameters tomatoparameters(s); + storeCanopyParameters(tomatoparameters); + if (build) + buildCanopy(tomatoparameters); - RGBAcolor pod_color = XMLloadrgba(s, "pod_color"); - if( pod_color.a != 0 ){ - beanparameters.pod_color = make_RGBcolor(pod_color.r,pod_color.g,pod_color.b); - } + } - int pod_subdivisions = XMLloadint(s, "pod_subdivisions"); - if (pod_subdivisions != nullvalue_i ) { - beanparameters.pod_subdivisions = pod_subdivisions; - } + //WalnutCanopyParameters Canopy + for (pugi::xml_node s = cgen.child("WalnutCanopyParameters"); s; s = s.next_sibling("WalnutCanopyParameters")) { - float plant_spacing = XMLloadfloat(s, "plant_spacing"); - if (plant_spacing != nullvalue_f) { - beanparameters.plant_spacing = plant_spacing; - } + WalnutCanopyParameters walnutcanopyparameters(s); + storeCanopyParameters(walnutcanopyparameters); + if (build) + buildCanopy(walnutcanopyparameters); - float row_spacing = XMLloadfloat(s, "row_spacing"); - if (row_spacing != nullvalue_f) { - beanparameters.row_spacing = row_spacing; - } + } - int2 plant_count = XMLloadint2(s, "plant_count"); - if (plant_count.x != nullvalue_i && plant_count.y != nullvalue_i) { - beanparameters.plant_count = plant_count; - } + //SorghumCanopyParameters Canopy + for (pugi::xml_node s = cgen.child("SorghumCanopyParameters"); s; s = s.next_sibling("SorghumCanopyParameters")) { - float germination_probability = XMLloadfloat(s, "germination_probability"); - if (germination_probability != nullvalue_f) { - beanparameters.germination_probability = germination_probability; - } + SorghumCanopyParameters sorghumcanopyparameters(s); + storeCanopyParameters(sorghumcanopyparameters); + if (build) + buildCanopy(sorghumcanopyparameters); - vec3 canopy_origin = XMLloadvec3(s, "canopy_origin"); - if (canopy_origin.x != nullvalue_f && canopy_origin.y != nullvalue_f) { - beanparameters.canopy_origin = canopy_origin; - } + } - float canopy_rotation = XMLloadfloat(s, "canopy_rotation"); - if (canopy_rotation != nullvalue_f) { - beanparameters.canopy_rotation = canopy_rotation; - } + //BeanParameters Canopy + for (pugi::xml_node s = cgen.child("BeanParameters"); s; s = s.next_sibling("BeanParameters")) { - buildCanopy(beanparameters); + BeanParameters beanparameters(s); + storeCanopyParameters(beanparameters); + if (build) + buildCanopy(beanparameters); } @@ -2100,7 +2281,8 @@ void CanopyGenerator::loadXML( const char* filename ){ rotation = 0; } - buildGround(origin, extent, texture_subtiles, texture_subpatches, texturefile.c_str(), rotation); + if (build) + buildGround(origin, extent, texture_subtiles, texture_subpatches, texturefile.c_str(), rotation); } @@ -2148,6 +2330,12 @@ void CanopyGenerator::buildGround(const vec3 &ground_origin, const vec2 &ground_ } +void CanopyGenerator::buildCanopies(){ + for (const auto& canopy_parameters : canopy_parameters_list) { + canopy_parameters->buildCanopy(*this); + } +} + void CanopyGenerator::buildCanopy(const HomogeneousCanopyParameters ¶ms ){ if( printmessages ){ @@ -2443,7 +2631,17 @@ void CanopyGenerator::buildCanopy(const VSPGrapevineParameters ¶ms ){ for( int j=0; j 0 ){ + float random_draw = context->randu(); + if( random_draw <= params.missing_plant_probability ){ + // Don't add the plant + continue; + } + } + + float plant_spacing = params.plant_spacing + getVariation(params.plant_spacing_spread, generator); + float row_spacing = params.row_spacing + getVariation(params.row_spacing_spread, generator); + vec3 center = params.canopy_origin+make_vec3(-0.5f*canopy_extent.x+(float(i)+0.5f)*plant_spacing, -0.5f*canopy_extent.y+(float(j)+0.5f)*row_spacing, 0 ); uint plant_ID = grapevineVSP( params, center ); @@ -2475,7 +2673,17 @@ void CanopyGenerator::buildCanopy(const SplitGrapevineParameters ¶ms ){ for( int j=0; j 0 ){ + float random_draw = context->randu(); + if( random_draw <= params.missing_plant_probability ){ + // Don't add the plant + continue; + } + } + + float plant_spacing = params.plant_spacing + getVariation(params.plant_spacing_spread, generator); + float row_spacing = params.row_spacing + getVariation(params.row_spacing_spread, generator); + vec3 center = params.canopy_origin+make_vec3(-0.5f*canopy_extent.x+(float(i)+0.5f)*plant_spacing, -0.5f*canopy_extent.y+(float(j)+0.5f)*row_spacing, 0 ); uint plant_ID = grapevineSplit( params, center ); @@ -2507,7 +2715,17 @@ void CanopyGenerator::buildCanopy(const UnilateralGrapevineParameters ¶ms ){ for( int j=0; j 0 ){ + float random_draw = context->randu(); + if( random_draw <= params.missing_plant_probability ){ + // Don't add the plant + continue; + } + } + + float plant_spacing = params.plant_spacing + getVariation(params.plant_spacing_spread, generator); + float row_spacing = params.row_spacing + getVariation(params.row_spacing_spread, generator); + vec3 center = params.canopy_origin+make_vec3(-0.5f*canopy_extent.x+(float(i)+0.5f)*plant_spacing, -0.5f*canopy_extent.y+(float(j)+0.5f)*row_spacing, 0 ); uint plant_ID = grapevineUnilateral( params, center ); @@ -2539,7 +2757,17 @@ void CanopyGenerator::buildCanopy(const GobletGrapevineParameters ¶ms ){ for( int j=0; j 0 ){ + float random_draw = context->randu(); + if( random_draw <= params.missing_plant_probability ){ + // Don't add the plant + continue; + } + } + + float plant_spacing = params.plant_spacing + getVariation(params.plant_spacing_spread, generator); + float row_spacing = params.row_spacing + getVariation(params.row_spacing_spread, generator); + vec3 center = params.canopy_origin+make_vec3(-0.5f*canopy_extent.x+(float(i)+0.5f)*plant_spacing, -0.5f*canopy_extent.y+(float(j)+0.5f)*row_spacing, 0 ); uint plant_ID = grapevineGoblet( params, center ); @@ -2982,6 +3210,19 @@ void CanopyGenerator::enableMessages(){ printmessages=true; } +void CanopyGenerator::buildIndividualPlants(helios::vec3 position){ + for (const auto& params : canopy_parameters_list) { + params->buildPlant(*this, position); + } +} + +void CanopyGenerator::buildIndividualPlants(){ + for (const auto& params : canopy_parameters_list) { + vec3 position = params->canopy_origin; + params->buildPlant(*this, position); + } +} + helios::vec3 interpolateTube(const std::vector &P, float frac ){ assert( frac>=0 && frac<=1 ); diff --git a/plugins/canopygenerator/src/grapevine.cpp b/plugins/canopygenerator/src/grapevine.cpp index 62d32fbfa..331d6f5cb 100644 --- a/plugins/canopygenerator/src/grapevine.cpp +++ b/plugins/canopygenerator/src/grapevine.cpp @@ -155,28 +155,41 @@ uint CanopyGenerator::grapevineVSP(const VSPGrapevineParameters ¶ms, const v std::uniform_real_distribution unif_distribution; + float canopy_rotation = params.canopy_rotation + getVariation(params.canopy_rotation_spread, generator); + + bool is_dead = false; + if( params.dead_probability > 0 ){ + float random_draw = context->randu(); + is_dead = random_draw <= params.dead_probability; + } + //------ trunks -------// + float trunk_radius = params.trunk_radius + getVariation(params.trunk_radius_spread, generator); + float trunk_height = params.trunk_height + getVariation(params.trunk_height_spread, generator); + std::vector rad_main; - rad_main.push_back(0.75f*params.trunk_radius); - rad_main.push_back(0.8f*params.trunk_radius); - rad_main.push_back(1.f*params.trunk_radius); - rad_main.push_back(0.7f*params.trunk_radius); - rad_main.push_back(0.95f*params.trunk_radius); - rad_main.push_back(0.1f*params.trunk_radius); + rad_main.push_back(0.75f*trunk_radius); + rad_main.push_back(0.8f*trunk_radius); + rad_main.push_back(1.f*trunk_radius); + rad_main.push_back(0.7f*trunk_radius); + rad_main.push_back(0.95f*trunk_radius); + rad_main.push_back(0.1f*trunk_radius); std::vector pos_main; pos_main.push_back(make_vec3(0.,0.,0.0)); - pos_main.push_back(make_vec3(0,0,0.2f*params.trunk_height)); - pos_main.push_back(make_vec3(0,0,0.22f*params.trunk_height)); - pos_main.push_back(make_vec3(0,0,0.6f*params.trunk_height)); - pos_main.push_back(make_vec3(0,0,0.96f*params.trunk_height)); - pos_main.push_back(make_vec3(0.,0.,params.trunk_height)); + pos_main.push_back(make_vec3(0,0,0.2f*trunk_height)); + pos_main.push_back(make_vec3(0,0,0.22f*trunk_height)); + pos_main.push_back(make_vec3(0,0,0.6f*trunk_height)); + pos_main.push_back(make_vec3(0,0,0.96f*trunk_height)); + pos_main.push_back(make_vec3(0.,0.,trunk_height)); for( uint i=0; iaddTubeObject(params.wood_subdivisions,pos_main,rad_main, params.wood_texture_file.c_str() ); + int wood_subdivisions = params.wood_subdivisions + static_cast(round(getVariation(params.wood_subdivisions_spread, generator))); + + uint objID = context->addTubeObject(wood_subdivisions,pos_main,rad_main, params.wood_texture_file.c_str() ); UUID_trunk_plant = context->getObjectPrimitiveUUIDs(objID); if( enable_element_labels ) { context->setPrimitiveData(UUID_trunk_plant, "element_label", "trunk"); @@ -184,27 +197,31 @@ uint CanopyGenerator::grapevineVSP(const VSPGrapevineParameters ¶ms, const v //---- Cordons -----// - float diff = params.cordon_height-params.trunk_height; + float cordon_height = params.cordon_height + getVariation(params.cordon_height_spread, generator); + float cordon_radius = params.cordon_radius + getVariation(params.cordon_radius_spread, generator); + float cordon_length = params.cordon_length + getVariation(params.cordon_length_spread, generator); + + float diff = cordon_height-trunk_height; - float cost = cosf(params.canopy_rotation); - float sint = sinf(params.canopy_rotation); + float cost = cosf(canopy_rotation); + float sint = sinf(canopy_rotation); - int Ncord = 2*params.wood_subdivisions; + int Ncord = 2*wood_subdivisions; //West Cordon std::vector rad_cordw; - rad_cordw.push_back(params.cordon_radius); + rad_cordw.push_back(cordon_radius); std::vector pos_cordw; - pos_cordw.push_back(make_vec3(0.01f*0.5f*params.plant_spacing*cost,0.01f*0.5f*params.plant_spacing*sint,0.95*params.trunk_height)); - vec3 n_start = sphere2cart(make_SphericalCoord(params.cordon_height,0.4f*M_PI*(1+getVariation(0.2,generator)),getVariation(0.2f*M_PI,generator))); - vec3 n_end = make_vec3(0.5f*params.cordon_height,0,0); + pos_cordw.push_back(make_vec3(0.01f*cordon_length*cost,0.01f*cordon_length*sint,0.95*trunk_height)); + vec3 n_start = sphere2cart(make_SphericalCoord(cordon_height,0.4f*M_PI*(1+getVariation(0.2,generator)),getVariation(0.2f*M_PI,generator))); + vec3 n_end = make_vec3(0.5f*cordon_height,0,0); for( int i=1; i tmp; @@ -213,22 +230,22 @@ uint CanopyGenerator::grapevineVSP(const VSPGrapevineParameters ¶ms, const v tmp.at(i) = pos_cordw.at(i) + origin; } - objID = context->addTubeObject(params.wood_subdivisions,tmp,rad_cordw,params.wood_texture_file.c_str() ); + objID = context->addTubeObject(wood_subdivisions,tmp,rad_cordw,params.wood_texture_file.c_str() ); UUID_branch_plant = context->getObjectPrimitiveUUIDs(objID); //East Cordon std::vector rad_corde; - rad_corde.push_back(params.cordon_radius); + rad_corde.push_back(cordon_radius); std::vector pos_corde; - pos_corde.push_back(make_vec3(-0.01f*0.5f*params.plant_spacing*cost,-0.01f*0.5f*params.plant_spacing*sint,0.95f*params.trunk_height)); - n_start = sphere2cart(make_SphericalCoord(params.cordon_height,0.4f*M_PI*(1+getVariation(0.2,generator)),M_PI+getVariation(0.2*M_PI,generator))); - n_end = make_vec3(-0.5f*params.cordon_height,0,0); + pos_corde.push_back(make_vec3(-0.01f*cordon_length*cost,-0.01f*cordon_length*sint,0.95f*trunk_height)); + n_start = sphere2cart(make_SphericalCoord(cordon_height,0.4f*M_PI*(1+getVariation(0.2,generator)),M_PI+getVariation(0.2*M_PI,generator))); + n_end = make_vec3(-0.5f*cordon_height,0,0); for( int i=1; iaddTubeObject(params.wood_subdivisions,tmp,rad_corde,params.wood_texture_file.c_str() ); + objID = context->addTubeObject(wood_subdivisions,tmp,rad_corde,params.wood_texture_file.c_str() ); U = context->getObjectPrimitiveUUIDs(objID); UUID_branch_plant.insert(UUID_branch_plant.end(), U.begin(), U.end() ); @@ -250,7 +267,11 @@ uint CanopyGenerator::grapevineVSP(const VSPGrapevineParameters ¶ms, const v std::vector leaf_ptype = leafPrototype( params.leaf_subdivisions, params.leaf_texture_file.c_str(), context ); - float height = params.cordon_height + params.shoot_length; + float shoot_length = params.shoot_length + getVariation(params.shoot_length_spread, generator); + float shoot_radius = params.shoot_radius + getVariation(params.shoot_radius_spread, generator); + uint shoots_per_cordon = params.shoots_per_cordon + getVariation(params.shoots_per_cordon_spread, generator); + + float height = cordon_height + shoot_length; //Looping over each cordon for( uint c=0; c<2; c++ ){ @@ -268,13 +289,13 @@ uint CanopyGenerator::grapevineVSP(const VSPGrapevineParameters ¶ms, const v sign = -1; } - float dx = fabs(pos_cord.back().y-pos_cord.at(0).y)/(float(params.shoots_per_cordon)); + float dx = fabs(pos_cord.back().y-pos_cord.at(0).y)/(float(shoots_per_cordon)); //looping over each shoot in the cordon - for( int j=1; j pos_pshoot; //shoot base - rad_pshoot.push_back( params.shoot_radius ); + rad_pshoot.push_back( shoot_radius ); pos_pshoot.push_back( cane_base ); //shoot nodes @@ -299,13 +320,15 @@ uint CanopyGenerator::grapevineVSP(const VSPGrapevineParameters ¶ms, const v //tangent vector for end of shoot vec3 n_end = sphere2cart(make_SphericalCoord(0.3f*height, 0.5f*M_PI*(1-unif_distribution(generator)*0.5),2.f*M_PI*unif_distribution(generator))); - uint Nz = 2*params.wood_subdivisions; - float dz = ((1+getVariation(0.1,generator))*height-params.cordon_height)/float(Nz); + uint Nz = 2*wood_subdivisions; + float dz = ((1+getVariation(0.1,generator))*height-cordon_height)/float(Nz); + + float total_cordons_length = 2 * cordon_length; //position of middle of shoot - vec3 cane_mid = cane_base + make_vec3(0.1f*getVariation(params.plant_spacing,generator),0.1f*getVariation(params.plant_spacing,generator),0.75f*Nz*dz); + vec3 cane_mid = cane_base + make_vec3(0.1f*getVariation(total_cordons_length,generator),0.1f*getVariation(total_cordons_length,generator),0.75f*Nz*dz); //position of end of shoot - vec3 cane_end = cane_base + make_vec3(0.15f*getVariation(params.plant_spacing,generator),0.15f*getVariation(params.plant_spacing,generator),Nz*dz); + vec3 cane_end = cane_base + make_vec3(0.15f*getVariation(total_cordons_length,generator),0.15f*getVariation(total_cordons_length,generator),Nz*dz); float zfrac_mid = (cane_mid.z-cane_base.z)/(cane_end.z-cane_base.z); @@ -323,7 +346,7 @@ uint CanopyGenerator::grapevineVSP(const VSPGrapevineParameters ¶ms, const v pos_pshoot.push_back( n ); - rad_pshoot.push_back( params.shoot_radius*(1.f-0.5f*float(k)/float(Nz)) ); + rad_pshoot.push_back( shoot_radius*(1.f-0.5f*float(k)/float(Nz)) ); } @@ -335,25 +358,34 @@ uint CanopyGenerator::grapevineVSP(const VSPGrapevineParameters ¶ms, const v tmp.at(i) = pos_pshoot.at(i) + origin; } - objID = context->addTubeObject(params.wood_subdivisions,tmp,rad_pshoot, params.wood_texture_file.c_str() ); + objID = context->addTubeObject(wood_subdivisions,tmp,rad_pshoot, params.wood_texture_file.c_str() ); U = context->getObjectPrimitiveUUIDs(objID); UUID_branch_plant.insert(UUID_branch_plant.end(), U.begin(), U.end() ); if( enable_element_labels ) { context->setPrimitiveData( U, "element_label", "cane"); } + if( is_dead ){ + // Don't add grapes and leaves + continue; + } + //grape clusters + float grape_radius = params.grape_radius + getVariation(params.grape_radius_spread, generator); + float cluster_radius = params.cluster_radius + getVariation(params.cluster_radius_spread, generator); + float cluster_height_max = params.cluster_height_max + getVariation(params.cluster_height_max_spread, generator); + uint grape_subdivisions = params.grape_subdivisions + static_cast(round(getVariation(params.grape_subdivisions_spread, generator))); std::vector > UUID_grapes; - if( params.grape_radius>0 && params.cluster_radius>0 ){ + if( grape_radius>0 && cluster_radius>0 ){ - float fgrape = 0.035f+(params.cluster_height_max-0.035)*unif_distribution(generator); + float fgrape = 0.035f+(cluster_height_max-0.035)*unif_distribution(generator); vec3 p_grape = interpolateTube( tmp, fgrape ); int sgn=1; if( unif_distribution(generator)<0.5 ){ sgn = -1; } - vec3 offset(sgn*(0.25f*params.cluster_radius+getVariation(0.1,generator))*sint,sgn*(0.1f*params.cluster_radius+getVariation(0.1,generator))*cost,0.f); - UUID_grapes = addGrapeCluster( p_grape+offset, params.grape_radius, params.cluster_radius, params.grape_color, params.grape_subdivisions ); + vec3 offset(sgn*(0.25f*cluster_radius+getVariation(0.1,generator))*sint,sgn*(0.1f*cluster_radius+getVariation(0.1,generator))*cost,0.f); + UUID_grapes = addGrapeCluster( p_grape+offset, grape_radius, cluster_radius, params.grape_color, grape_subdivisions ); } UUID_fruit_plant.push_back( UUID_grapes ); @@ -361,17 +393,19 @@ uint CanopyGenerator::grapevineVSP(const VSPGrapevineParameters ¶ms, const v if( params.leaf_width==0 ){ continue; } + float leaf_width = params.leaf_width + getVariation(params.leaf_width_spread, generator); float flip = 0; if( unif_distribution(generator)<0.5 ){ flip = 1; } + float leaf_spacing_fraction = params.leaf_spacing_fraction + getVariation(params.leaf_spacing_fraction, generator); float lfrac = 1.f; int iter=0; - while( lfrac>0.5*params.leaf_width && iter<100 ){ + while( lfrac>0.5*leaf_width && iter<100 ){ iter++; - float lsize = fmaxf(params.leaf_width*(1.f-exp(-5.f*(1-lfrac))),0.1f*params.leaf_width); + float lsize = fmaxf(leaf_width*(1.f-exp(-5.f*(1-lfrac))),0.1f*leaf_width); vec3 pos_leaf = interpolateTube( pos_pshoot, lfrac ); @@ -386,7 +420,7 @@ uint CanopyGenerator::grapevineVSP(const VSPGrapevineParameters ¶ms, const v s = -1; } - float Rphi = -params.canopy_rotation - s*0.5*M_PI*(1.f+getVariation(0.4,generator)); + float Rphi = -canopy_rotation - s*0.5*M_PI*(1.f+getVariation(0.4,generator)); float Rtheta = 0.25*M_PI*(1.f+getVariation(0.2,generator)); vec3 position = origin+pos_leaf+leaf_offset; @@ -400,7 +434,7 @@ uint CanopyGenerator::grapevineVSP(const VSPGrapevineParameters ¶ms, const v UUID_leaf_plant.push_back( UUID_leaf ); - lfrac = lfrac - params.leaf_spacing_fraction*lsize*(1.f+getVariation(0.25,generator)); + lfrac = lfrac - leaf_spacing_fraction*lsize*(1.f+getVariation(0.25,generator)); flip++; @@ -435,94 +469,113 @@ uint CanopyGenerator::grapevineSplit(const SplitGrapevineParameters ¶ms, con std::uniform_real_distribution unif_distribution; + float canopy_rotation = params.canopy_rotation + getVariation(params.canopy_rotation_spread, generator); + + bool is_dead = false; + if( params.dead_probability > 0 ){ + float random_draw = context->randu(); + is_dead = random_draw <= params.dead_probability; + } + //------ trunks -------// + float trunk_radius = params.trunk_radius + getVariation(params.trunk_radius_spread, generator); + float trunk_height = params.trunk_height + getVariation(params.trunk_height_spread, generator); + std::vector rad_main; - rad_main.push_back(0.75f*params.trunk_radius); - rad_main.push_back(0.8f*params.trunk_radius); - rad_main.push_back(1.f*params.trunk_radius); - rad_main.push_back(0.7f*params.trunk_radius); - rad_main.push_back(0.95f*params.trunk_radius); - rad_main.push_back(0.1f*params.trunk_radius); + rad_main.push_back(0.75f*trunk_radius); + rad_main.push_back(0.8f*trunk_radius); + rad_main.push_back(1.f*trunk_radius); + rad_main.push_back(0.7f*trunk_radius); + rad_main.push_back(0.95f*trunk_radius); + rad_main.push_back(0.1f*trunk_radius); std::vector pos_main; pos_main.push_back(make_vec3(0.,0.,0.0)); - pos_main.push_back(make_vec3(0,0,0.2f*params.trunk_height)); - pos_main.push_back(make_vec3(0,0,0.22f*params.trunk_height)); - pos_main.push_back(make_vec3(0,0,0.6f*params.trunk_height)); - pos_main.push_back(make_vec3(0,0,0.96f*params.trunk_height)); - pos_main.push_back(make_vec3(0.,0.,params.trunk_height)); + pos_main.push_back(make_vec3(0,0,0.2f*trunk_height)); + pos_main.push_back(make_vec3(0,0,0.22f*trunk_height)); + pos_main.push_back(make_vec3(0,0,0.6f*trunk_height)); + pos_main.push_back(make_vec3(0,0,0.96f*trunk_height)); + pos_main.push_back(make_vec3(0.,0.,trunk_height)); for( uint i=0; iaddTubeObject(params.wood_subdivisions,pos_main,rad_main, params.wood_texture_file.c_str() ); + int wood_subdivisions = params.wood_subdivisions + static_cast(round(getVariation(params.wood_subdivisions_spread, generator))); + + uint objID = context->addTubeObject(wood_subdivisions,pos_main,rad_main, params.wood_texture_file.c_str() ); UUID_trunk_plant = context->getObjectPrimitiveUUIDs(objID); //------ crown -------// - float diff = params.cordon_height-params.trunk_height; + float cordon_height = params.cordon_height + getVariation(params.cordon_height_spread, generator); + float cordon_radius = params.cordon_radius + getVariation(params.cordon_radius_spread, generator); + float cordon_spacing = params.cordon_spacing + getVariation(params.cordon_spacing_spread, generator); + + float diff = cordon_height-trunk_height; - float cost = cosf(params.canopy_rotation+0.5f*M_PI); - float sint = sinf(params.canopy_rotation+0.5f*M_PI); + float cost = cosf(canopy_rotation+0.5f*M_PI); + float sint = sinf(canopy_rotation+0.5f*M_PI); std::vector rad_crown; - rad_crown.push_back(0.6f*params.trunk_radius); - rad_crown.push_back(0.55f*params.trunk_radius); - rad_crown.push_back(0.5f*params.trunk_radius); - rad_crown.push_back(0.45f*params.trunk_radius); - rad_crown.push_back(0.4f*params.trunk_radius); + rad_crown.push_back(0.6f*trunk_radius); + rad_crown.push_back(0.55f*trunk_radius); + rad_crown.push_back(0.5f*trunk_radius); + rad_crown.push_back(0.45f*trunk_radius); + rad_crown.push_back(0.4f*trunk_radius); std::vector pos_crownw; - pos_crownw.push_back(make_vec3(0.,0.,0.95f*params.trunk_height)); - pos_crownw.push_back(make_vec3(0.05f*0.5f*params.cordon_spacing*cost,0.05f*0.5f*params.cordon_spacing*sint,params.trunk_height)); - pos_crownw.push_back(make_vec3(0.25f*0.5f*params.cordon_spacing*cost,0.25f*0.5f*params.cordon_spacing*sint,params.trunk_height+0.1f*diff)); - pos_crownw.push_back(make_vec3(0.45f*0.5f*params.cordon_spacing*cost,0.45f*0.5f*params.cordon_spacing*sint,params.trunk_height+0.65f*diff)); - pos_crownw.push_back(make_vec3(0.75f*0.5f*params.cordon_spacing*cost,0.75f*0.5f*params.cordon_spacing*sint,params.cordon_height)); + pos_crownw.push_back(make_vec3(0.,0.,0.95f*trunk_height)); + pos_crownw.push_back(make_vec3(0.05f*0.5f*cordon_spacing*cost,0.05f*0.5f*cordon_spacing*sint,trunk_height)); + pos_crownw.push_back(make_vec3(0.25f*0.5f*cordon_spacing*cost,0.25f*0.5f*cordon_spacing*sint,trunk_height+0.1f*diff)); + pos_crownw.push_back(make_vec3(0.45f*0.5f*cordon_spacing*cost,0.45f*0.5f*cordon_spacing*sint,trunk_height+0.65f*diff)); + pos_crownw.push_back(make_vec3(0.75f*0.5f*cordon_spacing*cost,0.75f*0.5f*cordon_spacing*sint,cordon_height)); for( uint i=0; iaddTubeObject(params.wood_subdivisions,pos_crownw,rad_crown, params.wood_texture_file.c_str() ); + objID = context->addTubeObject(wood_subdivisions,pos_crownw,rad_crown, params.wood_texture_file.c_str() ); U = context->getObjectPrimitiveUUIDs(objID); UUID_trunk_plant.insert( UUID_trunk_plant.end(), U.begin(), U.end() ); std::vector pos_crowne; - pos_crowne.push_back(make_vec3(0.,0.,0.95f*params.trunk_height)); - pos_crowne.push_back(make_vec3(-0.05f*0.5f*params.cordon_spacing*cost,-0.05f*0.5f*params.cordon_spacing*sint,params.trunk_height)); - pos_crowne.push_back(make_vec3(-0.25f*0.5f*params.cordon_spacing*cost,-0.25f*0.5f*params.cordon_spacing*sint,params.trunk_height+0.1f*diff)); - pos_crowne.push_back(make_vec3(-0.45f*0.5f*params.cordon_spacing*cost,-0.45f*0.5f*params.cordon_spacing*sint,params.trunk_height+0.65f*diff)); - pos_crowne.push_back(make_vec3(-0.75f*0.5f*params.cordon_spacing*cost,-0.75f*0.5f*params.cordon_spacing*sint,params.cordon_height)); + pos_crowne.push_back(make_vec3(0.,0.,0.95f*trunk_height)); + pos_crowne.push_back(make_vec3(-0.05f*0.5f*cordon_spacing*cost,-0.05f*0.5f*cordon_spacing*sint,trunk_height)); + pos_crowne.push_back(make_vec3(-0.25f*0.5f*cordon_spacing*cost,-0.25f*0.5f*cordon_spacing*sint,trunk_height+0.1f*diff)); + pos_crowne.push_back(make_vec3(-0.45f*0.5f*cordon_spacing*cost,-0.45f*0.5f*cordon_spacing*sint,trunk_height+0.65f*diff)); + pos_crowne.push_back(make_vec3(-0.75f*0.5f*cordon_spacing*cost,-0.75f*0.5f*cordon_spacing*sint,cordon_height)); for( uint i=0; iaddTubeObject(params.wood_subdivisions,pos_crowne,rad_crown, params.wood_texture_file.c_str() ); + objID = context->addTubeObject(wood_subdivisions,pos_crowne,rad_crown, params.wood_texture_file.c_str() ); U = context->getObjectPrimitiveUUIDs(objID); UUID_trunk_plant.insert( UUID_trunk_plant.end(), U.begin(), U.end() ); //---- Cordons -----// + float cordon_length = params.cordon_length + getVariation(params.cordon_length_spread, generator); + std::vector rad_cord; - rad_cord.push_back(params.cordon_radius); - rad_cord.push_back(0.95f*params.cordon_radius); - rad_cord.push_back(0.9f*params.cordon_radius); - rad_cord.push_back(0.9f*params.cordon_radius); - rad_cord.push_back(0.9f*params.cordon_radius); - rad_cord.push_back(0.6f*params.cordon_radius); - rad_cord.push_back(0.2f*params.cordon_radius); + rad_cord.push_back(cordon_radius); + rad_cord.push_back(0.95f*cordon_radius); + rad_cord.push_back(0.9f*cordon_radius); + rad_cord.push_back(0.9f*cordon_radius); + rad_cord.push_back(0.9f*cordon_radius); + rad_cord.push_back(0.6f*cordon_radius); + rad_cord.push_back(0.2f*cordon_radius); //West Cordon std::vector pos_cordnw; - pos_cordnw.push_back(make_vec3(0.7f*0.5f*params.cordon_spacing*cost,0.7f*0.5f*params.cordon_spacing*sint,0.99f*params.cordon_height)); - pos_cordnw.push_back(make_vec3(0.85f*0.5f*params.cordon_spacing*cost+0.025f*sint,0.85f*0.5f*params.cordon_spacing*sint+0.025f*cost,params.cordon_height)); - pos_cordnw.push_back(make_vec3(0.95f*0.5f*params.cordon_spacing*cost+0.075f*sint,0.95f*0.5f*params.cordon_spacing*sint+0.075f*cost,params.cordon_height)); - pos_cordnw.push_back(make_vec3(0.5f*params.cordon_spacing*cost+0.12f*sint,0.5f*params.cordon_spacing*sint+0.12f*cost,params.cordon_height)); - pos_cordnw.push_back(make_vec3(0.5f*params.cordon_spacing*cost+0.4f*0.5f*params.plant_spacing*sint,0.5f*params.cordon_spacing*sint+0.4f*0.5f*params.plant_spacing*cost,0.94f*params.cordon_height)); - pos_cordnw.push_back(make_vec3(0.5f*params.cordon_spacing*cost+0.8f*0.5f*params.plant_spacing*sint,0.5f*params.cordon_spacing*sint+0.8f*0.5f*params.plant_spacing*cost,0.97f*params.cordon_height)); - pos_cordnw.push_back(make_vec3(0.5f*params.cordon_spacing*cost+0.5f*params.plant_spacing*sint,0.5f*params.cordon_spacing*sint+0.5f*params.plant_spacing*cost,params.cordon_height)); + pos_cordnw.push_back(make_vec3(0.7f*0.5f*cordon_spacing*cost,0.7f*0.5f*cordon_spacing*sint,0.99f*cordon_height)); + pos_cordnw.push_back(make_vec3(0.85f*0.5f*cordon_spacing*cost+0.025f*sint,0.85f*0.5f*cordon_spacing*sint+0.025f*cost,cordon_height)); + pos_cordnw.push_back(make_vec3(0.95f*0.5f*cordon_spacing*cost+0.075f*sint,0.95f*0.5f*cordon_spacing*sint+0.075f*cost,cordon_height)); + pos_cordnw.push_back(make_vec3(0.5f*cordon_spacing*cost+0.12f*sint,0.5f*cordon_spacing*sint+0.12f*cost,cordon_height)); + pos_cordnw.push_back(make_vec3(0.5f*cordon_spacing*cost+0.4f*cordon_length*sint,0.5f*cordon_spacing*sint+0.4f*cordon_length*cost,0.94f*cordon_height)); + pos_cordnw.push_back(make_vec3(0.5f*cordon_spacing*cost+0.8f*cordon_length*sint,0.5f*cordon_spacing*sint+0.8f*cordon_length*cost,0.97f*cordon_height)); + pos_cordnw.push_back(make_vec3(0.5f*cordon_spacing*cost+cordon_length*sint,0.5f*cordon_spacing*sint+cordon_length*cost,cordon_height)); std::vector tmp; tmp.resize(pos_cordnw.size()); @@ -530,61 +583,61 @@ uint CanopyGenerator::grapevineSplit(const SplitGrapevineParameters ¶ms, con tmp.at(i) = pos_cordnw.at(i) + origin; } - objID = context->addTubeObject(params.wood_subdivisions,tmp,rad_cord,params.wood_texture_file.c_str() ); + objID = context->addTubeObject(wood_subdivisions,tmp,rad_cord,params.wood_texture_file.c_str() ); UUID_branch_plant = context->getObjectPrimitiveUUIDs(objID); std::vector pos_cordsw; - pos_cordsw.push_back(make_vec3(0.7f*0.5f*params.cordon_spacing*cost,0.7f*0.5f*params.cordon_spacing*sint,0.99f*params.cordon_height)); - pos_cordsw.push_back(make_vec3(0.85f*0.5f*params.cordon_spacing*cost-0.025f*sint,0.85f*0.5f*params.cordon_spacing*sint-0.025f*cost,params.cordon_height)); - pos_cordsw.push_back(make_vec3(0.95f*0.5f*params.cordon_spacing*cost-0.075f*sint,0.95f*0.5f*params.cordon_spacing*sint-0.075f*cost,params.cordon_height)); - pos_cordsw.push_back(make_vec3(0.5f*params.cordon_spacing*cost-0.12f*sint,0.5f*params.cordon_spacing*sint-0.12f*cost,params.cordon_height)); - pos_cordsw.push_back(make_vec3(0.5f*params.cordon_spacing*cost-0.4f*0.5f*params.plant_spacing*sint,0.5f*params.cordon_spacing*sint-0.4f*0.5f*params.plant_spacing*cost,0.94f*params.cordon_height)); - pos_cordsw.push_back(make_vec3(0.5f*params.cordon_spacing*cost-0.8f*0.5f*params.plant_spacing*sint,0.5f*params.cordon_spacing*sint-0.8f*0.5f*params.plant_spacing*cost,0.97f*params.cordon_height)); - pos_cordsw.push_back(make_vec3(0.5f*params.cordon_spacing*cost-0.5f*params.plant_spacing*sint,0.5f*params.cordon_spacing*sint-0.5f*params.plant_spacing*cost,params.cordon_height)); + pos_cordsw.push_back(make_vec3(0.7f*0.5f*cordon_spacing*cost,0.7f*0.5f*cordon_spacing*sint,0.99f*cordon_height)); + pos_cordsw.push_back(make_vec3(0.85f*0.5f*cordon_spacing*cost-0.025f*sint,0.85f*0.5f*cordon_spacing*sint-0.025f*cost,cordon_height)); + pos_cordsw.push_back(make_vec3(0.95f*0.5f*cordon_spacing*cost-0.075f*sint,0.95f*0.5f*cordon_spacing*sint-0.075f*cost,cordon_height)); + pos_cordsw.push_back(make_vec3(0.5f*cordon_spacing*cost-0.12f*sint,0.5f*cordon_spacing*sint-0.12f*cost,cordon_height)); + pos_cordsw.push_back(make_vec3(0.5f*cordon_spacing*cost-0.4f*cordon_length*sint,0.5f*cordon_spacing*sint-0.4f*cordon_length*cost,0.94f*cordon_height)); + pos_cordsw.push_back(make_vec3(0.5f*cordon_spacing*cost-0.8f*cordon_length*sint,0.5f*cordon_spacing*sint-0.8f*cordon_length*cost,0.97f*cordon_height)); + pos_cordsw.push_back(make_vec3(0.5f*cordon_spacing*cost-cordon_length*sint,0.5f*cordon_spacing*sint-cordon_length*cost,cordon_height)); tmp.resize(pos_cordsw.size()); for( uint i=0; iaddTubeObject(params.wood_subdivisions,tmp,rad_cord,params.wood_texture_file.c_str() ); + objID = context->addTubeObject(wood_subdivisions,tmp,rad_cord,params.wood_texture_file.c_str() ); U = context->getObjectPrimitiveUUIDs(objID); UUID_branch_plant.insert( UUID_branch_plant.end(), U.begin(), U.end() ); //East Cordon std::vector pos_cordne; - pos_cordne.push_back(make_vec3(-0.7f*0.5f*params.cordon_spacing*cost,-0.7f*0.5f*params.cordon_spacing*sint,0.99f*params.cordon_height)); - pos_cordne.push_back(make_vec3(-0.85f*0.5f*params.cordon_spacing*cost+0.025f*sint,-0.85f*0.5f*params.cordon_spacing*sint+0.025f*cost,params.cordon_height)); - pos_cordne.push_back(make_vec3(-0.95f*0.5f*params.cordon_spacing*cost+0.075f*sint,-0.95f*0.5f*params.cordon_spacing*sint+0.075f*cost,params.cordon_height)); - pos_cordne.push_back(make_vec3(-0.5f*params.cordon_spacing*cost+0.12f*sint,-0.5f*params.cordon_spacing*sint+0.12f*cost,params.cordon_height)); - pos_cordne.push_back(make_vec3(-0.5f*params.cordon_spacing*cost+0.4f*0.5f*params.plant_spacing*sint,-0.5f*params.cordon_spacing*sint+0.4f*0.5f*params.plant_spacing*cost,0.94f*params.cordon_height)); - pos_cordne.push_back(make_vec3(-0.5f*params.cordon_spacing*cost+0.8f*0.5f*params.plant_spacing*sint,-0.5f*params.cordon_spacing*sint+0.8f*0.5f*params.plant_spacing*cost,0.97f*params.cordon_height)); - pos_cordne.push_back(make_vec3(-0.5f*params.cordon_spacing*cost+0.5f*params.plant_spacing*sint,-0.5f*params.cordon_spacing*sint+0.5f*params.plant_spacing*cost,params.cordon_height)); + pos_cordne.push_back(make_vec3(-0.7f*0.5f*cordon_spacing*cost,-0.7f*0.5f*cordon_spacing*sint,0.99f*cordon_height)); + pos_cordne.push_back(make_vec3(-0.85f*0.5f*cordon_spacing*cost+0.025f*sint,-0.85f*0.5f*cordon_spacing*sint+0.025f*cost,cordon_height)); + pos_cordne.push_back(make_vec3(-0.95f*0.5f*cordon_spacing*cost+0.075f*sint,-0.95f*0.5f*cordon_spacing*sint+0.075f*cost,cordon_height)); + pos_cordne.push_back(make_vec3(-0.5f*cordon_spacing*cost+0.12f*sint,-0.5f*cordon_spacing*sint+0.12f*cost,cordon_height)); + pos_cordne.push_back(make_vec3(-0.5f*cordon_spacing*cost+0.4f*cordon_length*sint,-0.5f*cordon_spacing*sint+0.4f*cordon_length*cost,0.94f*cordon_height)); + pos_cordne.push_back(make_vec3(-0.5f*cordon_spacing*cost+0.8f*cordon_length*sint,-0.5f*cordon_spacing*sint+0.8f*cordon_length*cost,0.97f*cordon_height)); + pos_cordne.push_back(make_vec3(-0.5f*cordon_spacing*cost+cordon_length*sint,-0.5f*cordon_spacing*sint+cordon_length*cost,cordon_height)); tmp.resize(pos_cordne.size()); for( uint i=0; iaddTubeObject(params.wood_subdivisions,tmp,rad_cord,params.wood_texture_file.c_str() ); + objID = context->addTubeObject(wood_subdivisions,tmp,rad_cord,params.wood_texture_file.c_str() ); U = context->getObjectPrimitiveUUIDs(objID); UUID_branch_plant.insert( UUID_branch_plant.end(), U.begin(), U.end() ); std::vector pos_cordse; - pos_cordse.push_back(make_vec3(-0.7f*0.5f*params.cordon_spacing*cost,-0.7f*0.5f*params.cordon_spacing*sint,0.99f*params.cordon_height)); - pos_cordse.push_back(make_vec3(-0.85f*0.5f*params.cordon_spacing*cost-0.025f*sint,-0.85f*0.5f*params.cordon_spacing*sint-0.025f*cost,params.cordon_height)); - pos_cordse.push_back(make_vec3(-0.95f*0.5f*params.cordon_spacing*cost-0.075f*sint,-0.95f*0.5f*params.cordon_spacing*sint-0.075f*cost,params.cordon_height)); - pos_cordse.push_back(make_vec3(-0.5f*params.cordon_spacing*cost-0.12f*sint,-0.5f*params.cordon_spacing*sint-0.12f*cost,params.cordon_height)); - pos_cordse.push_back(make_vec3(-0.5f*params.cordon_spacing*cost-0.4f*0.5f*params.plant_spacing*sint,-0.5f*params.cordon_spacing*sint-0.4f*0.5f*params.plant_spacing*cost,0.94f*params.cordon_height)); - pos_cordse.push_back(make_vec3(-0.5f*params.cordon_spacing*cost-0.8f*0.5f*params.plant_spacing*sint,-0.5f*params.cordon_spacing*sint-0.8f*0.5f*params.plant_spacing*cost,0.97f*params.cordon_height)); - pos_cordse.push_back(make_vec3(-0.5f*params.cordon_spacing*cost-0.5f*params.plant_spacing*sint,-0.5f*params.cordon_spacing*sint-0.5f*params.plant_spacing*cost,params.cordon_height)); + pos_cordse.push_back(make_vec3(-0.7f*0.5f*cordon_spacing*cost,-0.7f*0.5f*cordon_spacing*sint,0.99f*cordon_height)); + pos_cordse.push_back(make_vec3(-0.85f*0.5f*cordon_spacing*cost-0.025f*sint,-0.85f*0.5f*cordon_spacing*sint-0.025f*cost,cordon_height)); + pos_cordse.push_back(make_vec3(-0.95f*0.5f*cordon_spacing*cost-0.075f*sint,-0.95f*0.5f*cordon_spacing*sint-0.075f*cost,cordon_height)); + pos_cordse.push_back(make_vec3(-0.5f*cordon_spacing*cost-0.12f*sint,-0.5f*cordon_spacing*sint-0.12f*cost,cordon_height)); + pos_cordse.push_back(make_vec3(-0.5f*cordon_spacing*cost-0.4f*cordon_length*sint,-0.5f*cordon_spacing*sint-0.4f*cordon_length*cost,0.94f*cordon_height)); + pos_cordse.push_back(make_vec3(-0.5f*cordon_spacing*cost-0.8f*cordon_length*sint,-0.5f*cordon_spacing*sint-0.8f*cordon_length*cost,0.97f*cordon_height)); + pos_cordse.push_back(make_vec3(-0.5f*cordon_spacing*cost-cordon_length*sint,-0.5f*cordon_spacing*sint-cordon_length*cost,cordon_height)); tmp.resize(pos_cordse.size()); for( uint i=0; iaddTubeObject(params.wood_subdivisions,tmp,rad_cord,params.wood_texture_file.c_str() ); + objID = context->addTubeObject(wood_subdivisions,tmp,rad_cord,params.wood_texture_file.c_str() ); U = context->getObjectPrimitiveUUIDs(objID); UUID_branch_plant.insert( UUID_branch_plant.end(), U.begin(), U.end() ); @@ -592,7 +645,13 @@ uint CanopyGenerator::grapevineSplit(const SplitGrapevineParameters ¶ms, con uint ID0 = context->addTileObject( make_vec3(0,0,0), make_vec2(1,1), make_SphericalCoord(0,M_PI), params.leaf_subdivisions, params.leaf_texture_file.c_str() ); - float height = params.cordon_height + params.shoot_length; + float shoot_length = params.shoot_length + getVariation(params.shoot_length_spread, generator); + float shoot_radius = params.shoot_radius + getVariation(params.shoot_radius_spread, generator); + uint shoots_per_cordon = params.shoots_per_cordon + getVariation(params.shoots_per_cordon_spread, generator); + float shoot_angle_base = params.shoot_angle_base + getVariation(params.shoot_angle_base_spread, generator); + float shoot_angle_tip = params.shoot_angle_tip + getVariation(params.shoot_angle_tip_spread, generator); + + float height = cordon_height + shoot_length; for( uint d=0; d<2; d++ ){//cordons for( uint c=0; c<2; c++ ){//shoot bend direction @@ -615,11 +674,11 @@ uint CanopyGenerator::grapevineSplit(const SplitGrapevineParameters ¶ms, con sign = -1; } - float dx = fabs(pos_cord.back().y-pos_cord.at(0).y)/(float(params.shoots_per_cordon)); + float dx = fabs(pos_cord.back().y-pos_cord.at(0).y)/(float(shoots_per_cordon)); - for( int j=1; j pos_pshoot; //cane base - rad_pshoot.push_back( params.shoot_radius ); + rad_pshoot.push_back( shoot_radius ); pos_pshoot.push_back( cane_base ); //cane nodes bool inside=false; - float phirot=0.5f*M_PI*(1+(-0.5f+unif_distribution(generator))*1.0)+params.canopy_rotation; + float phirot=0.5f*M_PI*(1+(-0.5f+unif_distribution(generator))*1.0)+canopy_rotation; if( unif_distribution(generator)<0.5 ){ phirot+=M_PI; if( c==0 ){ @@ -648,19 +707,19 @@ uint CanopyGenerator::grapevineSplit(const SplitGrapevineParameters ¶ms, con if( inside ){ theta0 = 0.5f*M_PI*unif_distribution(generator);//*(1.f+(-0.5+unif_distribution(generator))*0.6); }else{ - theta0 = params.shoot_angle_base*(1.f+(-0.5+unif_distribution(generator))*0.6); + theta0 = shoot_angle_base*(1.f+(-0.5+unif_distribution(generator))*0.6); } - float theta_end = params.shoot_angle_tip*(1.f+(-0.5+unif_distribution(generator))*0.6); + float theta_end = shoot_angle_tip*(1.f+(-0.5+unif_distribution(generator))*0.6); - uint Nz = 2*params.wood_subdivisions; - float dz = ((1+getVariation(0.1,generator))*height-params.cordon_height)/float(Nz); + uint Nz = 2*wood_subdivisions; + float dz = ((1+getVariation(0.1,generator))*height-cordon_height)/float(Nz); for( uint k=1; kaddTubeObject(params.wood_subdivisions,tmp,rad_pshoot, params.wood_texture_file.c_str() ); + objID = context->addTubeObject(wood_subdivisions,tmp,rad_pshoot, params.wood_texture_file.c_str() ); U = context->getObjectPrimitiveUUIDs(objID); UUID_branch_plant.insert(UUID_branch_plant.end(), U.begin(), U.end() ); + if( is_dead ){ + // Don't add grapes and leaves + continue; + } + //grape clusters + float grape_radius = params.grape_radius + getVariation(params.grape_radius_spread, generator); + float cluster_radius = params.cluster_radius + getVariation(params.cluster_radius_spread, generator); + float cluster_height_max = params.cluster_height_max + getVariation(params.cluster_height_max_spread, generator); + uint grape_subdivisions = params.grape_subdivisions + static_cast(round(getVariation(params.grape_subdivisions_spread, generator))); std::vector > UUID_grapes; - if( params.grape_radius>0 && params.cluster_radius>0 ){ + if( grape_radius>0 && cluster_radius>0 ){ - float fgrape = 0.035+(params.cluster_height_max-0.035)*unif_distribution(generator); + float fgrape = 0.035+(cluster_height_max-0.035)*unif_distribution(generator); vec3 p_grape = interpolateTube( tmp, fgrape ); int sgn=1; if( unif_distribution(generator)<0.5 ){ sgn = -1; } - vec3 offset(sgn*(2.2*params.cluster_radius+getVariation(0.1,generator))*sint,sgn*(2*params.cluster_radius+getVariation(0.1,generator))*cost,0.f); + vec3 offset(sgn*(2.2*cluster_radius+getVariation(0.1,generator))*sint,sgn*(2*cluster_radius+getVariation(0.1,generator))*cost,0.f); - UUID_grapes = addGrapeCluster( p_grape+offset, params.grape_radius, params.cluster_radius, params.grape_color, params.grape_subdivisions ); + UUID_grapes = addGrapeCluster( p_grape+offset, grape_radius, cluster_radius, params.grape_color, grape_subdivisions ); } UUID_fruit_plant.push_back( UUID_grapes ); @@ -696,17 +764,19 @@ uint CanopyGenerator::grapevineSplit(const SplitGrapevineParameters ¶ms, con if( params.leaf_width==0 ){ continue; } + float leaf_width = params.leaf_width + getVariation(params.leaf_width_spread, generator); float flip = 0; if( unif_distribution(generator)<0.5 ){ flip = 1; } + float leaf_spacing_fraction = params.leaf_spacing_fraction + getVariation(params.leaf_spacing_fraction, generator); float lfrac = 1.f; int iter=0; - while( lfrac>0.5*params.leaf_width && iter<100 ){ + while( lfrac>0.5*leaf_width && iter<100 ){ iter++; - float lsize = fmaxf(params.leaf_width*(1.f-exp(-5.f*(1-lfrac))),0.1*params.leaf_width); + float lsize = fmaxf(leaf_width*(1.f-exp(-5.f*(1-lfrac))),0.1*leaf_width); vec3 pos_leaf = interpolateTube( pos_pshoot, lfrac ); @@ -721,7 +791,7 @@ uint CanopyGenerator::grapevineSplit(const SplitGrapevineParameters ¶ms, con s = -1; } - float Rphi = -params.canopy_rotation - s*0.5*M_PI*(1.f+getVariation(0.4,generator)); + float Rphi = -canopy_rotation - s*0.5*M_PI*(1.f+getVariation(0.4,generator)); float Rtheta = 0.4*M_PI*(1.f+getVariation(0.1,generator)); vec3 position = origin+pos_leaf+leaf_offset; @@ -734,7 +804,7 @@ uint CanopyGenerator::grapevineSplit(const SplitGrapevineParameters ¶ms, con UUID_leaf_plant.push_back(context->getObjectPointer(ID)->getPrimitiveUUIDs()); - lfrac = lfrac - params.leaf_spacing_fraction*lsize*(1.f+getVariation(0.25,generator)); + lfrac = lfrac - leaf_spacing_fraction*lsize*(1.f+getVariation(0.25,generator)); flip++; @@ -767,54 +837,74 @@ uint CanopyGenerator::grapevineUnilateral(const UnilateralGrapevineParameters &p std::uniform_real_distribution unif_distribution; - float cost = cosf(params.canopy_rotation); - float sint = sinf(params.canopy_rotation); + float canopy_rotation = params.canopy_rotation + getVariation(params.canopy_rotation_spread, generator); + + float cost = cosf(canopy_rotation); + float sint = sinf(canopy_rotation); + + bool is_dead = false; + if( params.dead_probability > 0 ){ + float random_draw = context->randu(); + is_dead = random_draw <= params.dead_probability; + } + + float cordon_length = params.cordon_length + getVariation(params.cordon_length_spread, generator); //------ trunks -------// + float trunk_radius = params.trunk_radius + getVariation(params.trunk_radius_spread, generator); + float trunk_height = params.trunk_height + getVariation(params.trunk_height_spread, generator); + std::vector rad_main; - rad_main.push_back(0.75*params.trunk_radius); - rad_main.push_back(0.8f*params.trunk_radius); - rad_main.push_back(1.f*params.trunk_radius); - rad_main.push_back(0.7f*params.trunk_radius); - rad_main.push_back(0.95f*params.trunk_radius); - rad_main.push_back(0.1*params.trunk_radius); + rad_main.push_back(0.75*trunk_radius); + rad_main.push_back(0.8f*trunk_radius); + rad_main.push_back(1.f*trunk_radius); + rad_main.push_back(0.7f*trunk_radius); + rad_main.push_back(0.95f*trunk_radius); + rad_main.push_back(0.1*trunk_radius); std::vector pos_main; - pos_main.push_back(make_vec3((-0.5*params.plant_spacing+0.5*params.trunk_radius)*cost,(-0.5*params.plant_spacing+0.5*params.trunk_radius)*sint,0.0)); - pos_main.push_back(make_vec3((-0.5*params.plant_spacing+0.5*params.trunk_radius)*cost,(-0.5*params.plant_spacing+0.5*params.trunk_radius)*sint,0.2f*params.trunk_height)); - pos_main.push_back(make_vec3((-0.5*params.plant_spacing+0.5*params.trunk_radius)*cost,(-0.5*params.plant_spacing+0.5*params.trunk_radius)*sint,0.22f*params.trunk_height)); - pos_main.push_back(make_vec3((-0.5*params.plant_spacing+0.5*params.trunk_radius)*cost,(-0.5*params.plant_spacing+0.5*params.trunk_radius)*sint,0.6f*params.trunk_height)); - pos_main.push_back(make_vec3((-0.5*params.plant_spacing+0.5*params.trunk_radius)*cost,(-0.5*params.plant_spacing+0.5*params.trunk_radius)*sint,0.96f*params.trunk_height)); - pos_main.push_back(make_vec3((-0.5*params.plant_spacing+0.5*params.trunk_radius)*cost,(-0.5*params.plant_spacing+0.5*params.trunk_radius)*sint,params.trunk_height)); + pos_main.push_back(make_vec3((-cordon_length+0.5*trunk_radius)*cost,(-cordon_length+0.5*trunk_radius)*sint,0.0)); + pos_main.push_back(make_vec3((-cordon_length+0.5*trunk_radius)*cost,(-cordon_length+0.5*trunk_radius)*sint,0.2f*trunk_height)); + pos_main.push_back(make_vec3((-cordon_length+0.5*trunk_radius)*cost,(-cordon_length+0.5*trunk_radius)*sint,0.22f*trunk_height)); + pos_main.push_back(make_vec3((-cordon_length+0.5*trunk_radius)*cost,(-cordon_length+0.5*trunk_radius)*sint,0.6f*trunk_height)); + pos_main.push_back(make_vec3((-cordon_length+0.5*trunk_radius)*cost,(-cordon_length+0.5*trunk_radius)*sint,0.96f*trunk_height)); + pos_main.push_back(make_vec3((-cordon_length+0.5*trunk_radius)*cost,(-cordon_length+0.5*trunk_radius)*sint,trunk_height)); for( uint i=0; iaddTubeObject(params.wood_subdivisions,pos_main,rad_main, params.wood_texture_file.c_str() ); + int wood_subdivisions = params.wood_subdivisions + static_cast(round(getVariation(params.wood_subdivisions_spread, generator))); + + uint objID = context->addTubeObject(wood_subdivisions,pos_main,rad_main, params.wood_texture_file.c_str() ); UUID_trunk_plant = context->getObjectPrimitiveUUIDs(objID); //---- Cordons -----// - float diff = params.cordon_height-params.trunk_height; + float cordon_height = params.cordon_height + getVariation(params.cordon_height_spread, generator); + float cordon_radius = params.cordon_radius + getVariation(params.cordon_radius_spread, generator); + + float total_cordons_length = 2 * cordon_length; + + float diff = cordon_height-trunk_height; //Cordon std::vector rad_cord; - rad_cord.push_back(params.cordon_radius); - rad_cord.push_back(0.95*params.cordon_radius); - rad_cord.push_back(0.9f*params.cordon_radius); - rad_cord.push_back(0.85f*params.cordon_radius); - rad_cord.push_back(0.8*params.cordon_radius); - rad_cord.push_back(0.6*params.cordon_radius); - rad_cord.push_back(0.2f*params.cordon_radius); + rad_cord.push_back(cordon_radius); + rad_cord.push_back(0.95*cordon_radius); + rad_cord.push_back(0.9f*cordon_radius); + rad_cord.push_back(0.85f*cordon_radius); + rad_cord.push_back(0.8*cordon_radius); + rad_cord.push_back(0.6*cordon_radius); + rad_cord.push_back(0.2f*cordon_radius); std::vector pos_cord; - pos_cord.push_back(make_vec3((-0.5*params.plant_spacing+0.5*params.trunk_radius+0.01f*params.plant_spacing)*cost,(-0.5*params.plant_spacing+0.5*params.trunk_radius+0.01f*params.plant_spacing)*sint,0.95*params.trunk_height)); - pos_cord.push_back(make_vec3((-0.5*params.plant_spacing+0.5*params.trunk_radius+0.05f*params.plant_spacing)*cost,(-0.5*params.plant_spacing+0.5*params.trunk_radius+0.05f*params.plant_spacing)*sint,params.trunk_height+0.1f*diff)); - pos_cord.push_back(make_vec3((-0.5*params.plant_spacing+0.5*params.trunk_radius+0.15f*params.plant_spacing)*cost,(-0.5*params.plant_spacing+0.5*params.trunk_radius+0.15f*params.plant_spacing)*sint,params.trunk_height+0.65f*diff)); - pos_cord.push_back(make_vec3((-0.5*params.plant_spacing+0.5*params.trunk_radius+0.45f*params.plant_spacing)*cost,(-0.5*params.plant_spacing+0.5*params.trunk_radius+0.45f*params.plant_spacing)*sint,params.trunk_height+0.95f*diff)); - pos_cord.push_back(make_vec3((-0.5*params.plant_spacing+0.5*params.trunk_radius+0.6f*params.plant_spacing)*cost,(-0.5*params.plant_spacing+0.5*params.trunk_radius+0.6f*params.plant_spacing)*sint,params.trunk_height+1.05f*diff)); - pos_cord.push_back(make_vec3((-0.5*params.plant_spacing+0.5*params.trunk_radius+0.85f*params.plant_spacing)*cost,(-0.5*params.plant_spacing+0.5*params.trunk_radius+0.85f*params.plant_spacing)*sint,params.trunk_height+diff)); - pos_cord.push_back(make_vec3((-0.5*params.plant_spacing+0.5*params.trunk_radius+1.0f*params.plant_spacing)*cost,(-0.5*params.plant_spacing+0.5*params.trunk_radius+1.0f*params.plant_spacing)*sint,params.trunk_height+diff)); + pos_cord.push_back(make_vec3((-cordon_length+0.5*trunk_radius+0.01f*total_cordons_length)*cost,(-cordon_length+0.5*trunk_radius+0.01f*total_cordons_length)*sint,0.95*trunk_height)); + pos_cord.push_back(make_vec3((-cordon_length+0.5*trunk_radius+0.05f*total_cordons_length)*cost,(-cordon_length+0.5*trunk_radius+0.05f*total_cordons_length)*sint,trunk_height+0.1f*diff)); + pos_cord.push_back(make_vec3((-cordon_length+0.5*trunk_radius+0.15f*total_cordons_length)*cost,(-cordon_length+0.5*trunk_radius+0.15f*total_cordons_length)*sint,trunk_height+0.65f*diff)); + pos_cord.push_back(make_vec3((-cordon_length+0.5*trunk_radius+0.45f*total_cordons_length)*cost,(-cordon_length+0.5*trunk_radius+0.45f*total_cordons_length)*sint,trunk_height+0.95f*diff)); + pos_cord.push_back(make_vec3((-cordon_length+0.5*trunk_radius+0.6f*total_cordons_length)*cost,(-cordon_length+0.5*trunk_radius+0.6f*total_cordons_length)*sint,trunk_height+1.05f*diff)); + pos_cord.push_back(make_vec3((-cordon_length+0.5*trunk_radius+0.85f*total_cordons_length)*cost,(-cordon_length+0.5*trunk_radius+0.85f*total_cordons_length)*sint,trunk_height+diff)); + pos_cord.push_back(make_vec3((-cordon_length+0.5*trunk_radius+1.0f*total_cordons_length)*cost,(-cordon_length+0.5*trunk_radius+1.0f*total_cordons_length)*sint,trunk_height+diff)); std::vector tmp; tmp.resize(pos_cord.size()); @@ -822,20 +912,24 @@ uint CanopyGenerator::grapevineUnilateral(const UnilateralGrapevineParameters &p tmp.at(i) = pos_cord.at(i) + origin; } - objID = context->addTubeObject(params.wood_subdivisions,tmp,rad_cord,params.wood_texture_file.c_str() ); + objID = context->addTubeObject(wood_subdivisions,tmp,rad_cord,params.wood_texture_file.c_str() ); UUID_branch_plant = context->getObjectPrimitiveUUIDs(objID); //------- primary shoots ---------// uint ID0 = context->addTileObject( make_vec3(0,0,0), make_vec2(1,1), make_SphericalCoord(0,M_PI), params.leaf_subdivisions, params.leaf_texture_file.c_str() ); - float height = params.cordon_height + params.shoot_length; + float shoot_length = params.shoot_length + getVariation(params.shoot_length_spread, generator); + float shoot_radius = params.shoot_radius + getVariation(params.shoot_radius_spread, generator); + uint shoots_per_cordon = params.shoots_per_cordon + getVariation(params.shoots_per_cordon_spread, generator); + + float height = cordon_height + shoot_length; - float dx = fabs(pos_cord.back().y-pos_cord.at(0).y)/(float(params.shoots_per_cordon)); + float dx = fabs(pos_cord.back().y-pos_cord.at(0).y)/(float(shoots_per_cordon)); - for( int j=1; j pos_pshoot; //cane base - rad_pshoot.push_back( params.shoot_radius ); + rad_pshoot.push_back( shoot_radius ); pos_pshoot.push_back( cane_base ); //cane nodes @@ -856,15 +950,15 @@ uint CanopyGenerator::grapevineUnilateral(const UnilateralGrapevineParameters &p float theta0 = (0.3f-unif_distribution(generator))*0.6; float theta_end = (0.1f-unif_distribution(generator))*0.2; - uint Nz = 2*params.wood_subdivisions; - float dz = ((1+getVariation(0.1,generator))*height-params.cordon_height)/float(Nz); + uint Nz = 2*wood_subdivisions; + float dz = ((1+getVariation(0.1,generator))*height-cordon_height)/float(Nz); for( uint k=1; kaddTubeObject(params.wood_subdivisions,tmp,rad_pshoot, params.wood_texture_file.c_str() ); + objID = context->addTubeObject(wood_subdivisions,tmp,rad_pshoot, params.wood_texture_file.c_str() ); U = context->getObjectPrimitiveUUIDs(objID); UUID_branch_plant.insert(UUID_branch_plant.end(), U.begin(), U.end() ); + if( is_dead ){ + // Don't add grapes and leaves + continue; + } + //grape clusters + float grape_radius = params.grape_radius + getVariation(params.grape_radius_spread, generator); + float cluster_radius = params.cluster_radius + getVariation(params.cluster_radius_spread, generator); + float cluster_height_max = params.cluster_height_max + getVariation(params.cluster_height_max_spread, generator); + uint grape_subdivisions = params.grape_subdivisions + static_cast(round(getVariation(params.grape_subdivisions_spread, generator))); std::vector > UUID_grapes; - if( params.grape_radius>0 && params.cluster_radius>0 ){ + if( grape_radius>0 && cluster_radius>0 ){ - float fgrape = 0.035+(params.cluster_height_max-0.035)*unif_distribution(generator); + float fgrape = 0.035+(cluster_height_max-0.035)*unif_distribution(generator); vec3 p_grape = interpolateTube( tmp, fgrape ); int sgn=1; if( unif_distribution(generator)<0.5 ){ sgn = -1; } - vec3 offset(sgn*(2.2*params.cluster_radius+getVariation(0.1,generator))*sint,sgn*(2*params.cluster_radius+getVariation(0.1,generator))*cost,0.f); - UUID_grapes = addGrapeCluster( p_grape+offset, params.grape_radius, params.cluster_radius, params.grape_color, params.grape_subdivisions ); + vec3 offset(sgn*(2.2*cluster_radius+getVariation(0.1,generator))*sint,sgn*(2*cluster_radius+getVariation(0.1,generator))*cost,0.f); + UUID_grapes = addGrapeCluster( p_grape+offset, grape_radius, cluster_radius, params.grape_color, grape_subdivisions ); } UUID_fruit_plant.push_back( UUID_grapes ); @@ -899,17 +1002,19 @@ uint CanopyGenerator::grapevineUnilateral(const UnilateralGrapevineParameters &p if( params.leaf_width==0 ){ continue; } + float leaf_width = params.leaf_width + getVariation(params.leaf_width_spread, generator); float flip = 0; if( unif_distribution(generator)<0.5 ){ flip = 1; } + float leaf_spacing_fraction = params.leaf_spacing_fraction + getVariation(params.leaf_spacing_fraction, generator); float lfrac = 1.f; int iter=0; - while( lfrac>0.5*params.leaf_width && iter<100 ){ + while( lfrac>0.5*leaf_width && iter<100 ){ iter++; - float lsize = fmaxf(params.leaf_width*(1.f-exp(-5.f*(1-lfrac))),0.1*params.leaf_width); + float lsize = fmaxf(leaf_width*(1.f-exp(-5.f*(1-lfrac))),0.1*leaf_width); vec3 pos_leaf = interpolateTube( pos_pshoot, lfrac ); @@ -924,7 +1029,7 @@ uint CanopyGenerator::grapevineUnilateral(const UnilateralGrapevineParameters &p s = -1; } - float Rphi = -params.canopy_rotation - s*0.5*M_PI*(1.f+getVariation(0.4,generator)); + float Rphi = -canopy_rotation - s*0.5*M_PI*(1.f+getVariation(0.4,generator)); float Rtheta = 0.4*M_PI*(1.f+getVariation(0.1,generator)); vec3 position = origin+pos_leaf-leaf_offset; @@ -937,7 +1042,7 @@ uint CanopyGenerator::grapevineUnilateral(const UnilateralGrapevineParameters &p UUID_leaf_plant.push_back(context->getObjectPointer(ID)->getPrimitiveUUIDs()); - lfrac = lfrac - params.leaf_spacing_fraction*lsize*(1.f+getVariation(0.25,generator)); + lfrac = lfrac - leaf_spacing_fraction*lsize*(1.f+getVariation(0.25,generator)); flip++; @@ -965,66 +1070,85 @@ uint CanopyGenerator::grapevineGoblet(const GobletGrapevineParameters ¶ms, c std::uniform_real_distribution unif_distribution; - float cost = cosf(params.canopy_rotation); - float sint = sinf(params.canopy_rotation); + float canopy_rotation = params.canopy_rotation + getVariation(params.canopy_rotation_spread, generator); + + float cost = cosf(canopy_rotation); + float sint = sinf(canopy_rotation); + + bool is_dead = false; + if( params.dead_probability > 0 ){ + float random_draw = context->randu(); + is_dead = random_draw <= params.dead_probability; + } //------ trunks -------// + float trunk_radius = params.trunk_radius + getVariation(params.trunk_radius_spread, generator); + float trunk_height = params.trunk_height + getVariation(params.trunk_height_spread, generator); + std::vector rad_main; - rad_main.push_back(0.75*params.trunk_radius); - rad_main.push_back(0.8f*params.trunk_radius); - rad_main.push_back(1.f*params.trunk_radius); - rad_main.push_back(0.7f*params.trunk_radius); - rad_main.push_back(0.95f*params.trunk_radius); - rad_main.push_back(0.1*params.trunk_radius); + rad_main.push_back(0.75*trunk_radius); + rad_main.push_back(0.8f*trunk_radius); + rad_main.push_back(1.f*trunk_radius); + rad_main.push_back(0.7f*trunk_radius); + rad_main.push_back(0.95f*trunk_radius); + rad_main.push_back(0.1*trunk_radius); std::vector pos_main; pos_main.push_back(make_vec3(0.,0.,0.0)); - pos_main.push_back(make_vec3(0,0,0.2f*params.trunk_height)); - pos_main.push_back(make_vec3(0,0,0.22f*params.trunk_height)); - pos_main.push_back(make_vec3(0,0,0.6f*params.trunk_height)); - pos_main.push_back(make_vec3(0,0,0.96f*params.trunk_height)); - pos_main.push_back(make_vec3(0.,0.,params.trunk_height)); + pos_main.push_back(make_vec3(0,0,0.2f*trunk_height)); + pos_main.push_back(make_vec3(0,0,0.22f*trunk_height)); + pos_main.push_back(make_vec3(0,0,0.6f*trunk_height)); + pos_main.push_back(make_vec3(0,0,0.96f*trunk_height)); + pos_main.push_back(make_vec3(0.,0.,trunk_height)); for( uint i=0; iaddTubeObject(params.wood_subdivisions,pos_main,rad_main, params.wood_texture_file.c_str() ); + int wood_subdivisions = params.wood_subdivisions + static_cast(round(getVariation(params.wood_subdivisions_spread, generator))); + + uint objID = context->addTubeObject(wood_subdivisions,pos_main,rad_main, params.wood_texture_file.c_str() ); UUID_trunk_plant = context->getObjectPrimitiveUUIDs(objID); //------- primary shoots ---------// + float cordon_height = params.cordon_height + getVariation(params.cordon_height_spread, generator); + + float shoot_length = params.shoot_length + getVariation(params.shoot_length_spread, generator); + float shoot_radius = params.shoot_radius + getVariation(params.shoot_radius_spread, generator); + uint shoots_per_cordon = params.shoots_per_cordon + getVariation(params.shoots_per_cordon_spread, generator); + uint ID0 = context->addTileObject( make_vec3(0,0,0), make_vec2(1,1), make_SphericalCoord(0,M_PI), params.leaf_subdivisions, params.leaf_texture_file.c_str() ); for( uint c=0; c<2; c++ ){ - for( int j=1; j rad_pshoot; std::vector pos_pshoot; //cane base - rad_pshoot.push_back( params.shoot_radius ); + rad_pshoot.push_back( shoot_radius ); pos_pshoot.push_back( cane_base ); - float theta0 = 0.5*M_PI*(1.f-float(j-1)/float(params.shoots_per_cordon)); + float theta0 = 0.5*M_PI*(1.f-float(j-1)/float(shoots_per_cordon)); float theta_end = (0.1f-unif_distribution(generator))*0.2; - uint Nz = 2*params.wood_subdivisions; - float dz = ((1+getVariation(0.1,generator))*height-params.cordon_height)/float(Nz); + uint Nz = 2*wood_subdivisions; + float dz = ((1+getVariation(0.1,generator))*height-cordon_height)/float(Nz); for( uint k=1; kaddTubeObject(params.wood_subdivisions,tmp,rad_pshoot, params.wood_texture_file.c_str() ); + objID = context->addTubeObject(wood_subdivisions,tmp,rad_pshoot, params.wood_texture_file.c_str() ); U = context->getObjectPrimitiveUUIDs(objID); UUID_branch_plant.insert(UUID_branch_plant.end(), U.begin(), U.end() ); + if( is_dead ){ + // Don't add grapes and leaves + continue; + } + //grape clusters + float grape_radius = params.grape_radius + getVariation(params.grape_radius_spread, generator); + float cluster_radius = params.cluster_radius + getVariation(params.cluster_radius_spread, generator); + float cluster_height_max = params.cluster_height_max + getVariation(params.cluster_height_max_spread, generator); + uint grape_subdivisions = params.grape_subdivisions + static_cast(round(getVariation(params.grape_subdivisions_spread, generator))); std::vector > UUID_grapes; - if( params.grape_radius>0 && params.cluster_radius>0 ){ + if( grape_radius>0 && cluster_radius>0 ){ - float fgrape = 0.035+(params.cluster_height_max-0.035)*unif_distribution(generator); + float fgrape = 0.035+(cluster_height_max-0.035)*unif_distribution(generator); vec3 p_grape = interpolateTube( tmp, fgrape ); int sgn=1; if( unif_distribution(generator)<0.5 ){ sgn = -1; } - vec3 offset(sgn*(2.2*params.cluster_radius+getVariation(0.1,generator))*sint,sgn*(2*params.cluster_radius+getVariation(0.1,generator))*cost,0.f); - UUID_grapes = addGrapeCluster( p_grape+offset, params.grape_radius, params.cluster_radius, params.grape_color, params.grape_subdivisions ); + vec3 offset(sgn*(2.2*cluster_radius+getVariation(0.1,generator))*sint,sgn*(2*cluster_radius+getVariation(0.1,generator))*cost,0.f); + UUID_grapes = addGrapeCluster( p_grape+offset, grape_radius, cluster_radius, params.grape_color, grape_subdivisions ); } UUID_fruit_plant.push_back( UUID_grapes ); @@ -1059,17 +1192,19 @@ uint CanopyGenerator::grapevineGoblet(const GobletGrapevineParameters ¶ms, c if( params.leaf_width==0 ){ continue; } + float leaf_width = params.leaf_width + getVariation(params.leaf_width_spread, generator); float flip = 0; if( unif_distribution(generator)<0.5 ){ flip = 1; } + float leaf_spacing_fraction = params.leaf_spacing_fraction + getVariation(params.leaf_spacing_fraction, generator); float lfrac = 1.f; int iter=0; - while( lfrac>0.5*params.leaf_width && iter<100 ){ + while( lfrac>0.5*leaf_width && iter<100 ){ iter++; - float lsize = fmaxf(params.leaf_width*(1.f-exp(-5.f*(1-lfrac))),0.1*params.leaf_width); + float lsize = fmaxf(leaf_width*(1.f-exp(-5.f*(1-lfrac))),0.1*leaf_width); vec3 pos_leaf = interpolateTube( pos_pshoot, lfrac ); @@ -1084,7 +1219,7 @@ uint CanopyGenerator::grapevineGoblet(const GobletGrapevineParameters ¶ms, c s = -1; } - float Rphi = -params.canopy_rotation - s*0.5*M_PI*(1.f+getVariation(0.4,generator)); + float Rphi = -canopy_rotation - s*0.5*M_PI*(1.f+getVariation(0.4,generator)); float Rtheta = 0.4*M_PI*(1.f+getVariation(0.1,generator)); vec3 position = origin+pos_leaf-leaf_offset; @@ -1097,7 +1232,7 @@ uint CanopyGenerator::grapevineGoblet(const GobletGrapevineParameters ¶ms, c UUID_leaf_plant.push_back(context->getObjectPointer(ID)->getPrimitiveUUIDs()); - lfrac = lfrac - params.leaf_spacing_fraction*lsize*(1.f+getVariation(0.25,generator)); + lfrac = lfrac - leaf_spacing_fraction*lsize*(1.f+getVariation(0.25,generator)); flip++; diff --git a/plugins/canopygenerator/xml/grapevine.xml b/plugins/canopygenerator/xml/grapevine.xml new file mode 100644 index 000000000..ea53b9d15 --- /dev/null +++ b/plugins/canopygenerator/xml/grapevine.xml @@ -0,0 +1,100 @@ + + + + + + 0.18 + 1 1 + plugins/canopygenerator/textures/GrapeLeaf.png + plugins/canopygenerator/textures/wood.jpg + 10 + 0.7 + 0.05 + 0.9 + 0.02 + 0.9 + 0.005 + 10 + 0.5 + 0.0075 + 0.03 + 0.15 + 0.18 0.2 0.25 + 8 + 0 0 0 + 0 + + + + 0.18 + 1 1 + plugins/canopygenerator/textures/GrapeLeaf.png + plugins/canopygenerator/textures/wood.jpg + 10 + 1.3 + 0.05 + 1.5 + 0.02 + 1.0 + 1.2 + 0.0025 + 10 + 1.256637 + 0 + 0.6 + 0.0075 + 0.03 + 0.1 + 0.18 0.2 0.25 + 8 + 0 0 0 + 0 + + + + 0.18 + 1 1 + plugins/canopygenerator/textures/GrapeLeaf.png + plugins/canopygenerator/textures/wood.jpg + 10 + 0.7 + 0.05 + 0.9 + 0.04 + 0.9 + 0.0025 + 20 + 0.6 + 0.0075 + 0.03 + 0.1 + 0.18 0.2 0.25 + 8 + 0 0 0 + 0 + + + + 0.18 + 1 1 + plugins/canopygenerator/textures/GrapeLeaf.png + plugins/canopygenerator/textures/wood.jpg + 10 + 0.7 + 0.05 + 0.9 + 0.02 + 0.9 + 0.0025 + 10 + 0.6 + 0.0075 + 0.03 + 0.1 + 0.18 0.2 0.25 + 8 + 0 0 0 + 0 + + + \ No newline at end of file diff --git a/plugins/energybalance/include/EnergyBalanceModel.h b/plugins/energybalance/include/EnergyBalanceModel.h index 21ff32873..3f0d023c0 100755 --- a/plugins/energybalance/include/EnergyBalanceModel.h +++ b/plugins/energybalance/include/EnergyBalanceModel.h @@ -69,6 +69,12 @@ class EnergyBalanceModel{ */ void addRadiationBand( const char* band ); + //! Add the labels of radiation bands in the RadiationModel plug-in that should be used in calculation of the absorbed all-wave radiation flux + /** + * \param[in] bands Vector of names of radiation bands (e.g., PAR, NIR, LW, etc.) + */ + void addRadiationBand( const std::vector &bands ); + //! Add optional output primitive data values to the Context /** * \param[in] label Name of primitive data (e.g., vapor_pressure_deficit) diff --git a/plugins/energybalance/src/EnergyBalanceModel.cpp b/plugins/energybalance/src/EnergyBalanceModel.cpp index 25a236fcc..d4d19a4c9 100755 --- a/plugins/energybalance/src/EnergyBalanceModel.cpp +++ b/plugins/energybalance/src/EnergyBalanceModel.cpp @@ -344,6 +344,12 @@ void EnergyBalanceModel::addRadiationBand( const char* band ){ } } +void EnergyBalanceModel::addRadiationBand( const std::vector &bands ){ + for( auto &band : bands ){ + addRadiationBand(band.c_str()); + } +} + void EnergyBalanceModel::optionalOutputPrimitiveData( const char* label ){ if( strcmp(label,"boundarylayer_conductance_out")==0 || strcmp(label,"vapor_pressure_deficit")==0 ){ diff --git a/plugins/plantarchitecture/assets/obj/AlmondFlower.mtl b/plugins/plantarchitecture/assets/obj/AlmondFlower.mtl index 4328d3365..1ce951942 100644 --- a/plugins/plantarchitecture/assets/obj/AlmondFlower.mtl +++ b/plugins/plantarchitecture/assets/obj/AlmondFlower.mtl @@ -1,4 +1,4 @@ -# Blender 3.4.1 MTL File: 'AlmondFlower.blend' +# Blender 4.0.2 MTL File: 'AlmondFlower.blend' # www.blender.org newmtl Material.001 diff --git a/plugins/plantarchitecture/assets/obj/AlmondFlower.obj b/plugins/plantarchitecture/assets/obj/AlmondFlower.obj index 9f1a3a47e..65d9ca00f 100644 --- a/plugins/plantarchitecture/assets/obj/AlmondFlower.obj +++ b/plugins/plantarchitecture/assets/obj/AlmondFlower.obj @@ -1,110 +1,213 @@ -# Blender 3.4.1 +# Blender 4.0.2 # www.blender.org mtllib AlmondFlower.mtl o petals -v 0.507602 -0.071074 -0.094018 -v 0.488935 -0.126128 -0.149073 -v 0.460997 -0.162915 -0.185859 -v 0.428042 -0.175832 -0.198777 -v 0.507602 -0.097973 -0.029077 -v 0.488935 -0.175832 -0.029077 -v 0.460997 -0.227856 -0.029077 -v 0.428042 -0.246124 -0.029077 -v 0.507602 -0.071074 0.035864 -v 0.488935 -0.126128 0.090919 -v 0.460997 -0.162915 0.127705 -v 0.428042 -0.175832 0.140623 -v 0.507602 -0.006132 0.062764 -v 0.488935 -0.006132 0.140623 -v 0.460997 -0.006132 0.192647 -v 0.428042 -0.006132 0.210915 -v 0.507602 0.058809 0.035864 -v 0.488935 0.113864 0.090919 -v 0.460997 0.150650 0.127705 -v 0.428042 0.163567 0.140623 -v 0.507602 0.085709 -0.029077 -v 0.488935 0.163567 -0.029077 -v 0.460997 0.215591 -0.029077 -v 0.428042 0.233859 -0.029077 -v 0.507602 0.058809 -0.094018 -v 0.488935 0.113864 -0.149073 -v 0.460997 0.150650 -0.185859 -v 0.428042 0.163567 -0.198777 -v 0.514157 -0.006132 -0.029077 -v 0.507602 -0.006132 -0.120918 -v 0.488935 -0.006132 -0.198777 -v 0.460997 -0.006132 -0.250801 -v 0.428042 -0.006132 -0.269069 -v 0.511711 0.510335 -0.299122 -v 0.724867 0.840735 -0.165635 -v 0.908510 0.875462 0.262117 -v 0.720954 0.766675 0.380027 -v 0.510662 0.441196 0.330427 -v 0.416494 0.158445 0.104590 -v 0.416246 0.169007 -0.148317 -v 0.557105 0.558498 0.057505 -v 0.557105 0.558498 0.057505 -v 0.557105 0.558498 0.057505 -v 0.557105 0.558498 0.057505 -v 0.557105 0.558498 0.057505 -v 0.557105 0.558498 0.057505 -v 0.557105 0.558498 0.057505 -v 0.458908 0.470369 0.390313 -v 0.542826 0.551424 0.781803 -v 0.683263 0.282482 0.979796 -v 0.577464 0.017695 0.915510 -v 0.429601 -0.152927 0.536629 -v 0.423871 -0.069810 0.173940 -v 0.425857 0.173917 0.103506 -v 0.454676 0.192757 0.566450 -v 0.454676 0.192757 0.566450 -v 0.454676 0.192757 0.566450 -v 0.454676 0.192757 0.566450 -v 0.454676 0.192757 0.566450 -v 0.454676 0.192757 0.566450 -v 0.454676 0.192757 0.566450 -v 0.481241 -0.247470 0.545187 -v 0.714400 -0.591750 0.756024 -v 0.878972 -0.803781 0.627596 -v 0.511073 -0.884016 0.289284 -v 0.404856 -0.579233 -0.002389 -v 0.425779 -0.208611 -0.035417 -v 0.437938 -0.066309 0.174616 -v 0.495776 -0.500784 0.336414 -v 0.495776 -0.500784 0.336414 -v 0.495776 -0.500784 0.336414 -v 0.495776 -0.500784 0.336414 -v 0.495776 -0.500784 0.336414 -v 0.495776 -0.500784 0.336414 -v 0.495776 -0.500784 0.336414 -v 0.490885 -0.617472 -0.089959 -v 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b/plugins/plantarchitecture/assets/obj/AppleFruit.mtl @@ -0,0 +1,12 @@ +# Blender 4.0.2 MTL File: 'AppleFruit.blend' +# www.blender.org + +newmtl Material.001 +Ns 250.000000 +Ka 1.000000 1.000000 1.000000 +Ks 0.500000 0.500000 0.500000 +Ke 0.000000 0.000000 0.000000 +Ni 1.450000 +d 1.000000 +illum 2 +map_Kd ../textures/AppleFruit.jpg diff --git a/plugins/plantarchitecture/assets/obj/AppleFruit.obj b/plugins/plantarchitecture/assets/obj/AppleFruit.obj new file mode 100644 index 000000000..9585ee54a --- /dev/null +++ b/plugins/plantarchitecture/assets/obj/AppleFruit.obj @@ -0,0 +1,412 @@ +# Blender 4.0.2 +# www.blender.org +mtllib AppleFruit.mtl +o fruit +v -0.044672 0.188544 -0.002560 +v 0.029634 0.401420 0.143973 +v 0.199753 0.461005 0.170061 +v 0.363229 0.468496 0.170416 +v 0.578532 0.395023 0.142624 +v 0.713151 0.267976 0.066524 +v 0.020634 -0.000000 0.002904 +v -0.038422 0.244065 0.257942 +v 0.068089 0.343276 0.284473 +v 0.259256 0.384040 0.325390 +v 0.517613 0.347192 0.294571 +v 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1.000000 1.000000 +Kd 0.700000 0.700000 0.700000 +Ks 0.025799 0.025799 0.025799 +Ke 0.000000 0.000000 0.000000 +Ni 1.450000 +d 1.000000 +illum 2 + +newmtl Material.001 +Ns 13.620669 +Ka 1.000000 1.000000 1.000000 +Kd 0.800000 0.800000 0.800000 +Ks 0.000000 0.000000 0.000000 +Ke 0.000000 0.000000 0.000000 +Ni 1.450000 +d 1.000000 +illum 1 + +newmtl Material.002 +Ns 250.000000 +Ka 1.000000 1.000000 1.000000 +Kd 0.147027 0.201556 0.063010 +Ks 0.500000 0.500000 0.500000 +Ke 0.000000 0.000000 0.000000 +Ni 1.450000 +d 1.000000 +illum 2 diff --git a/plugins/plantarchitecture/assets/obj/OliveFlower_open.obj b/plugins/plantarchitecture/assets/obj/OliveFlower_open.obj new file mode 100644 index 000000000..db5fc3272 --- /dev/null +++ b/plugins/plantarchitecture/assets/obj/OliveFlower_open.obj @@ -0,0 +1,134 @@ +# Blender 3.3.0 +# www.blender.org +mtllib OliveFlower_open.mtl +o pedicel +v -0.000342 0.025000 -0.000463 +v 0.339791 0.025000 -0.000463 +v -0.000342 0.012500 -0.022114 +v 0.339791 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1.000000 1.000000 +Kd 0.800000 0.800000 0.800000 +Ks 0.000000 0.000000 0.000000 +Ke 0.000000 0.000000 0.000000 +Ni 1.450000 +d 1.000000 +illum 1 + +newmtl Material.003 +Ns 250.000000 +Ka 1.000000 1.000000 1.000000 +Kd 0.250000 0.300000 0.100000 +Ks 0.500000 0.500000 0.500000 +Ke 0.000000 0.000000 0.000000 +Ni 1.450000 +d 1.000000 +illum 2 diff --git a/plugins/plantarchitecture/assets/obj/OliveFruit.obj b/plugins/plantarchitecture/assets/obj/OliveFruit.obj new file mode 100644 index 000000000..14859cab4 --- /dev/null +++ b/plugins/plantarchitecture/assets/obj/OliveFruit.obj @@ -0,0 +1,149 @@ +# Blender 3.3.0 +# www.blender.org +mtllib OliveFruit.mtl +o pedicel +v -0.000342 0.025000 -0.000463 +v 0.339791 0.025000 -0.000463 +v -0.000342 0.012500 -0.022114 +v 0.339791 0.012500 -0.022114 +v -0.000342 -0.012500 -0.022114 +v 0.339791 -0.012500 -0.022114 +v -0.000342 -0.025000 -0.000463 +v 0.339791 -0.025000 -0.000463 +v -0.000342 -0.012500 0.021187 +v 0.339791 -0.012500 0.021187 +v -0.000342 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20 47 +f 40 46 20 +f 40 37 46 +f 37 19 46 +f 38 45 19 +f 38 35 45 +f 35 23 45 +f 43 44 22 +f 43 34 44 +f 34 17 44 +f 41 42 21 +f 41 33 42 +f 33 16 42 +f 39 40 20 +f 39 31 40 +f 31 15 40 +f 37 38 19 +f 37 27 38 +f 27 14 38 +f 35 36 23 +f 35 28 36 +f 28 18 36 +f 29 34 18 +f 29 32 34 +f 32 17 34 +f 32 33 17 +f 32 30 33 +f 30 16 33 +f 30 31 16 +f 30 25 31 +f 25 15 31 +f 28 29 18 +f 28 26 29 +f 26 13 29 +f 25 27 15 +f 25 26 27 +f 26 14 27 diff --git a/plugins/plantarchitecture/assets/obj/PistachioNut.mtl b/plugins/plantarchitecture/assets/obj/PistachioNut.mtl new file mode 100644 index 000000000..cc2fa43fc --- /dev/null +++ b/plugins/plantarchitecture/assets/obj/PistachioNut.mtl @@ -0,0 +1,22 @@ +# Blender 4.0.2 MTL File: 'PistachioNut.blend' +# www.blender.org + +newmtl Material +Ns 250.000000 +Ka 1.000000 1.000000 1.000000 +Kd 0.214081 0.422524 0.090695 +Ks 0.500000 0.500000 0.500000 +Ke 0.000000 0.000000 0.000000 +Ni 1.450000 +d 1.000000 +illum 2 + +newmtl Material.001 +Ns 250.000000 +Ka 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78/58 69/74 68/52 +f 82/59 73/43 72/41 81/55 +f 78/58 79/61 70/46 69/74 +f 73/43 82/59 83/1 diff --git a/plugins/plantarchitecture/assets/obj/RedbudPod.mtl b/plugins/plantarchitecture/assets/obj/RedbudPod.mtl index 8ac12746b..802b453da 100644 --- a/plugins/plantarchitecture/assets/obj/RedbudPod.mtl +++ b/plugins/plantarchitecture/assets/obj/RedbudPod.mtl @@ -8,5 +8,5 @@ Ks 0.000000 0.000000 0.000000 Ke 0.000000 0.000000 0.000000 Ni 1.450000 illum 1 -map_Kd /Users/bnbailey/Dropbox/Helios/plugins/plantarchitecture/assets/textures/RedbudPod.png -map_d /Users/bnbailey/Dropbox/Helios/plugins/plantarchitecture/assets/textures/RedbudPod.png +map_Kd ../textures/RedbudPod.png +map_d ../textures/RedbudPod.png diff --git a/plugins/plantarchitecture/assets/obj/StrawberryFruit.mtl b/plugins/plantarchitecture/assets/obj/StrawberryFruit.mtl index 37b054aa0..d43c5854f 100644 --- a/plugins/plantarchitecture/assets/obj/StrawberryFruit.mtl +++ b/plugins/plantarchitecture/assets/obj/StrawberryFruit.mtl @@ 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b/plugins/plantarchitecture/assets/textures/OliveLeaf_lower.png new file mode 100644 index 000000000..bca199fd0 Binary files /dev/null and b/plugins/plantarchitecture/assets/textures/OliveLeaf_lower.png differ diff --git a/plugins/plantarchitecture/assets/textures/OliveLeaf_upper.png b/plugins/plantarchitecture/assets/textures/OliveLeaf_upper.png new file mode 100644 index 000000000..cccb3d7fc Binary files /dev/null and b/plugins/plantarchitecture/assets/textures/OliveLeaf_upper.png differ diff --git a/plugins/plantarchitecture/assets/textures/PistachioLeaf.png b/plugins/plantarchitecture/assets/textures/PistachioLeaf.png new file mode 100644 index 000000000..6ded618bb Binary files /dev/null and b/plugins/plantarchitecture/assets/textures/PistachioLeaf.png differ diff --git a/plugins/plantarchitecture/assets/textures/PistachioNut.jpg b/plugins/plantarchitecture/assets/textures/PistachioNut.jpg new file mode 100644 index 000000000..d8b03ad12 Binary files /dev/null and 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Nothing has been done yet to optimize efficiency. It may be helpful to lower the subdivision count on leaves and stems/branches. +- This plug-in is under active development and changes much more frequently than other plug-ins, and backward compatability is not necessarily maintained. Please check the release notes for each version to see what has changed and how to modify your code to accommodate changes that break backward compatability. +- The phyllochron and phenological threshold values (e.g., time to flowering) in the plant library are currently arbitrary and not necessarily reflective of reality. This will be updated in a future release. +- Computational efficiency has been improved substantially, but some models may still be a bit slow to generate. This will be improved in the future. For now, you can decrease subdivision counts, or prevent the plant from flowering/fruiting (these take a lot of primitives and computational power).
void helios::vec4::normalize vec4 helios::vec4::normalize ( )
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@@ -158,9 +162,8 @@ The table below lists the parameters that define the geometry of the phytomer, a | length_segments | \htmlonlyuint\endhtmlonly | - | Number of longitudinal segment subdivisions of the inflorescence supporting structure. | | radial_subdivisions | \htmlonlyuint\endhtmlonly | - | Number of radial subdivisions segments of the inflorescence supporting structure (e.g., =4 gives a square cross-section; =5 gives a pentagonal cross-section, etc.) | | --- **inflorescence** --- |||| -| flowers_per_rachis | RandomParameter_int | - | Number of flowers per peduncle (rachis). | -| flower_offset | RandomParameter_float | - | If peduncle has multiple flowers/fruit (flowers_per_rachis>1), this sets the spacing between adjacent flowers/fruit along the peduncle as a fraction of the peduncle length. | -| flower_arrangement_pattern | \htmlonlystd::string\endhtmlonly | - | Pattern of flower arrangement on the peduncle (rachis): one of "alternate" or "opposite". Only used if flowers_per_rachis > 1. | +| flowers_per_peduncle | RandomParameter_int | - | Number of flowers per peduncle (rachis). | +| flower_offset | RandomParameter_float | - | If peduncle has multiple flowers/fruit (flowers_per_peduncle>1), this sets the spacing between adjacent flowers/fruit along the peduncle as a fraction of the peduncle length. | | pitch | RandomParameter_float | degrees | Angle of the fruit axis with respect to its parent peduncle axis. | | roll | RandomParameter_float | degrees | Rotation angle of the fruit about it's own axis (x-axis of fruit prototype). | | flower_prototype_scale | RandomParameter_float | - | Scaling factor applied to the flower prototype. Usually the prototype has unit length, so this sets the physical length of the flower. | @@ -271,7 +274,7 @@ Alternatively, a compound leaf could be created by adding a single "leaf prototy The term 'inflorescence' used to denote the peduncle and flowers together. The peduncle is the supporting structure that connects the internode to the flowers. In this model, we do not distinguish between the peduncle (part between the internode and first flower) and the rachis (part that connects adjacent flowers when there are multiple flowers per inflorescence) - this is all considered the peduncle for simplicity. -If \htmlonlyflowers_per_rachis\endhtmlonly is greater than 1, the flowers are arranged along the peduncle in a pattern specified by the parameter \htmlonlyflower_arrangement_pattern\endhtmlonly (the two options are "alternate" and "opposite"). The \htmlonlyflower_offset\endhtmlonly parameter specifies the spacing between adjacent flowers along the peduncle. +If \htmlonlyflowers_per_peduncle\endhtmlonly is greater than 1, the flowers are arranged along the peduncle in a pattern specified by the parameter \htmlonlyflower_arrangement_pattern\endhtmlonly (the two options are "alternate" and "opposite"). The \htmlonlyflower_offset\endhtmlonly parameter specifies the spacing between adjacent flowers along the peduncle. The sketch below shows an example of one parameter set for the infloresence. @@ -304,7 +307,7 @@ Parameters defining the geometry and growth of the shoot are given in the \ref S | phyllochron | RandomParameter_float | 1.0 | days/leaf | Time between the emergence of successive phytomers along the shoot. | | leaf_flush_count | \htmlonlyuint\endhtmlonly | 1 | - | Number of leaves/phytomers to flush at a time. Flushes will occur at an interval of phyllochron*leaf_flush_count. | | elongation_rate | RandomParameter_float | 0.2 | meter/meter/day | Relative rate of elongation of the internode of the shoot. Units are meters of elongation per meter of maximum internode length per day. | -| girth_growth_rate | RandomParameter_float | 0.0001 | meter/day | Rate of increase of the internode radius of the shoot. Units are meters of increase in internode radius per day. | +| girth_area_factor | RandomParameter_float | 0 | cm^2 branch area / m^2 downstream leaf area | Cross-sectional area of internode (girth), determined by the amount of downstream leaf area. The girth will only increase and does not decrease if leaves are lost. Set this factor to 0 to prevent girth scaling. | | vegetative_bud_break_time | RandomParameter_float | 5 | days | Amount of time after the bud is created or after dormancy is broken for the vegetative bud to break. | | vegetative_bud_break_probability | RandomParameter_float | 0 | - | Probability of a bud breaking dormancy and emerging as a shoot. | | flower_bud_break_probability | RandomParameter_float | 0 | - | Probability of a flower bud emerging as a flower. | diff --git a/plugins/plantarchitecture/doc/images/PlantArchitecture_cover_image.png b/plugins/plantarchitecture/doc/images/PlantArchitecture_cover_image.png new file mode 100644 index 000000000..37e806a36 Binary files /dev/null and b/plugins/plantarchitecture/doc/images/PlantArchitecture_cover_image.png differ diff --git a/plugins/plantarchitecture/include/Assets.h b/plugins/plantarchitecture/include/Assets.h index c0e2700bf..f5432ec2a 100644 --- a/plugins/plantarchitecture/include/Assets.h +++ b/plugins/plantarchitecture/include/Assets.h @@ -26,6 +26,12 @@ uint AlmondFlowerPrototype( helios::Context* context_ptr, uint subdivisions, boo void AlmondPhytomerCreationFunction( std::shared_ptr phytomer, uint shoot_node_index, uint parent_shoot_node_index, uint shoot_max_nodes, float plant_age ); void AlmondPhytomerCallbackFunction( std::shared_ptr phytomer ); +uint AppleLeafPrototype( helios::Context* context_ptr, uint subdivisions, int compound_leaf_index ); +uint AppleFruitPrototype( helios::Context* context_ptr, uint subdivisions, float time_since_fruit_set ); +uint AppleFlowerPrototype( helios::Context* context_ptr, uint subdivisions, bool flower_is_open=false ); +void ApplePhytomerCreationFunction( std::shared_ptr phytomer, uint shoot_node_index, uint parent_shoot_node_index, uint shoot_max_nodes, float plant_age ); +void ApplePhytomerCallbackFunction( std::shared_ptr phytomer ); + uint AsparagusLeafPrototype( helios::Context* context_ptr, uint subdivisions, int compound_leaf_index ); void AsparagusPhytomerCreationFunction( std::shared_ptr phytomer, uint shoot_node_index, uint parent_shoot_node_index, uint shoot_max_nodes, float plant_age ); @@ -50,6 +56,24 @@ uint CowpeaFruitPrototype( helios::Context* context_ptr, uint subdivisions, floa uint CowpeaFlowerPrototype( helios::Context* context_ptr, uint subdivisions, bool flower_is_open=false ); void CowpeaPhytomerCreationFunction( std::shared_ptr phytomer, uint shoot_node_index, uint parent_shoot_node_index, uint shoot_max_nodes, float plant_age ); +uint GrapevineLeafPrototype( helios::Context* context_ptr, uint subdivisions, int compound_leaf_index ); +uint GrapevineFruitPrototype( helios::Context* context_ptr, uint subdivisions, float time_since_fruit_set ); +//uint GrapevineFlowerPrototype( helios::Context* context_ptr, uint subdivisions, bool flower_is_open=false ); +void GrapevinePhytomerCreationFunction( std::shared_ptr phytomer, uint shoot_node_index, uint parent_shoot_node_index, uint shoot_max_nodes, float plant_age ); +//void GrapevinePhytomerCallbackFunction( std::shared_ptr phytomer ); + +uint OliveLeafPrototype( helios::Context* context_ptr, uint subdivisions, int compound_leaf_index ); +uint OliveFruitPrototype( helios::Context* context_ptr, uint subdivisions, float time_since_fruit_set ); +uint OliveFlowerPrototype( helios::Context* context_ptr, uint subdivisions, bool flower_is_open=false ); +void OlivePhytomerCreationFunction( std::shared_ptr phytomer, uint shoot_node_index, uint parent_shoot_node_index, uint shoot_max_nodes, float plant_age ); +void OlivePhytomerCallbackFunction( std::shared_ptr phytomer ); + +uint PistachioLeafPrototype( helios::Context* context_ptr, uint subdivisions, int compound_leaf_index ); +uint PistachioFruitPrototype( helios::Context* context_ptr, uint subdivisions, float time_since_fruit_set ); +uint PistachioFlowerPrototype( helios::Context* context_ptr, uint subdivisions, bool flower_is_open=false ); +void PistachioPhytomerCreationFunction( std::shared_ptr phytomer, uint shoot_node_index, uint parent_shoot_node_index, uint shoot_max_nodes, float plant_age ); +void PistachioPhytomerCallbackFunction( std::shared_ptr phytomer ); + uint PuncturevineLeafPrototype( helios::Context* context_ptr, uint subdivisions, int compound_leaf_index ); uint PuncturevineFlowerPrototype( helios::Context* context_ptr, uint subdivisions, bool flower_is_open=false ); diff --git a/plugins/plantarchitecture/include/PlantArchitecture.h b/plugins/plantarchitecture/include/PlantArchitecture.h index f1a298b33..2e1109c75 100644 --- a/plugins/plantarchitecture/include/PlantArchitecture.h +++ b/plugins/plantarchitecture/include/PlantArchitecture.h @@ -82,6 +82,9 @@ struct RandomParameter_float { } void uniformDistribution( float minval, float maxval ){ + if( minval>maxval ){ + throw (std::runtime_error("ERROR (PlantArchitecture): RandomParameter_float::uniformDistribution() - minval must be less than or equal to maxval.")); + } distribution = "uniform"; distribution_parameters = {minval, maxval}; sampled = false; @@ -169,11 +172,20 @@ struct RandomParameter_int { } void uniformDistribution( int minval, int maxval ){ + if( minval>maxval ){ + throw (std::runtime_error("ERROR (PlantArchitecture): RandomParameter_int::uniformDistribution() - minval must be less than or equal to maxval.")); + } distribution = "uniform"; distribution_parameters = {minval, maxval}; sampled = false; } + void discreteValues( const std::vector &values ){ + distribution = "discretevalues"; + distribution_parameters = values; + sampled = false; + } + int val(){ if( !sampled ){ constval = resample(); @@ -190,6 +202,9 @@ struct RandomParameter_int { if (distribution == "uniform") { std::uniform_int_distribution<> unif_distribution(distribution_parameters.at(0),distribution_parameters.at(1)); constval = unif_distribution(*generator); + }else if (distribution == "discretevalues") { + std::uniform_int_distribution<> unif_distribution(0,distribution_parameters.size()-1); + constval = distribution_parameters.at(unif_distribution(*generator)); } } return constval; @@ -425,9 +440,8 @@ struct PhytomerParameters{ }; struct InflorescenceParameters { - RandomParameter_int flowers_per_rachis; + RandomParameter_int flowers_per_peduncle; RandomParameter_float flower_offset; - std::string flower_arrangement_pattern; RandomParameter_float pitch; RandomParameter_float roll; RandomParameter_float flower_prototype_scale; @@ -438,11 +452,10 @@ struct PhytomerParameters{ uint unique_prototypes; InflorescenceParameters &operator=(const InflorescenceParameters &a) { - this->flowers_per_rachis = a.flowers_per_rachis; - this->flowers_per_rachis.resample(); + this->flowers_per_peduncle = a.flowers_per_peduncle; + this->flowers_per_peduncle.resample(); this->flower_offset = a.flower_offset; this->flower_offset.resample(); - this->flower_arrangement_pattern = a.flower_arrangement_pattern; this->pitch = a.pitch; this->pitch.resample(); this->roll = a.roll; @@ -519,6 +532,10 @@ struct ShootParameters{ // Radius of phytomer internodes when they are first created RandomParameter_float internode_radius_initial; + RandomParameter_float internode_radius_max; //meters + + RandomParameter_float girth_area_factor; //cm^2 branch area / m^2 downstream leaf area + // Insertion angle of the most apical child shoot bud at the time it breaks RandomParameter_float insertion_angle_tip; RandomParameter_float insertion_angle_decay_rate; @@ -541,9 +558,6 @@ struct ShootParameters{ RandomParameter_float elongation_rate; //length/day - RandomParameter_float girth_growth_rate; //1/day - RandomParameter_float internode_radius_max; //meters - // Probability that bud with this shoot type will break and form a new shoot RandomParameter_float vegetative_bud_break_probability; @@ -578,8 +592,8 @@ struct ShootParameters{ this->leaf_flush_count = a.leaf_flush_count; this->elongation_rate = a.elongation_rate; this->elongation_rate.resample(); - this->girth_growth_rate = a.girth_growth_rate; - this->girth_growth_rate.resample(); + this->girth_area_factor = a.girth_area_factor; + this->girth_area_factor.resample(); this->internode_radius_max = a.internode_radius_max; this->internode_radius_max.resample(); this->vegetative_bud_break_probability = a.vegetative_bud_break_probability; @@ -666,6 +680,8 @@ struct Phytomer { bool hasLeaf() const; + float calculateDownstreamLeafArea() const; + // ---- modify the phytomer ---- // void setInternodeLengthScaleFraction(float internode_scale_factor_fraction, bool update_context_geometry); @@ -838,6 +854,8 @@ struct Shoot { helios::vec3 getShootAxisVector( float shoot_fraction ) const; + float sumShootLeafArea( uint start_node_index = 0 ) const; + uint current_node_number; helios::vec3 base_position; @@ -880,8 +898,8 @@ struct Shoot { bool build_context_geometry_internode = true; - //map of node number (key) to ID of shoot child (value) - std::map childIDs; + //map of node number (key) to IDs of shoot children (value) + std::map > childIDs; ShootParameters shoot_parameters; @@ -911,6 +929,7 @@ struct PlantInstance{ float dd_to_fruit_set = 0; float dd_to_fruit_maturity = 0; float dd_to_senescence = 0; + bool is_evergreen = false; }; @@ -1027,15 +1046,16 @@ class PlantArchitecture{ //! Specify the threshold values for plant phenological stages /** * \param[in] plantID ID of the plant. - * \param[in] time_to_leaf_out Time from dormancy required for leaf out. + * \param[in] time_to_dormancy_break Time from last scenescence required for breaking dormancy. * \param[in] time_to_flower_initiation Time from emergence/dormancy required to reach flower creation (closed flowers). * \param[in] time_to_flower_opening Time from flower initiation to flower opening. * \param[in] time_to_fruit_set Time from flower opening required to reach fruit set (i.e., flower dies and fruit is created). * \param[in] time_to_fruit_maturity Time from fruit set date required to reach fruit maturity. * \param[in] time_to_senescence Time from emergence/dormancy required to reach senescence. + * \param[in] is_evergreen [OPTIONAL] True if the plant is evergreen (i.e., does not lose all leaves during senescence). * \note Any phenological stage can be skipped by specifying a negative threshold value. In this case, the stage will be skipped and the threshold for the next stage will be relative to the previous stage. */ - void setPlantPhenologicalThresholds(uint plantID, float time_to_leaf_out, float time_to_flower_initiation, float time_to_flower_opening, float time_to_fruit_set, float time_to_fruit_maturity, float time_to_senescence); + void setPlantPhenologicalThresholds(uint plantID, float time_to_dormancy_break, float time_to_flower_initiation, float time_to_flower_opening, float time_to_fruit_set, float time_to_fruit_maturity, float time_to_senescence, bool is_evergreen=false); void disablePlantPhenology( uint plantID ); @@ -1174,9 +1194,7 @@ class PlantArchitecture{ void initializeShootCarbohydratePool(uint plantID, uint shootID, float carbohydrate_concentration_molC_m3 ); - void incrementPhytomerInternodeGirth(uint plantID, uint shootID, uint node_number, float girth_change, bool update_context_geometry = true); - - void updateShootInternodeLength(uint plantID, uint shootID, float dt, bool update_context_geometry = true ); + void incrementPhytomerInternodeGirth(uint plantID, uint shootID, uint node_number, bool update_context_geometry); void setPhytomerLeafScale(uint plantID, uint shootID, uint node_number, float leaf_scale_factor_fraction); @@ -1206,6 +1224,13 @@ class PlantArchitecture{ helios::vec3 getPlantBasePosition(uint plantID) const; + //! Sum the one-sided leaf area of all leaves in the plant + /** + * \param[in] plantID ID of the plant instance. + * \return Total one-sided leaf area of all leaves in the plant. + */ + float sumPlantLeafArea(uint plantID) const; + //! Get object IDs for all organs objects for a given plant /** * \param[in] plantID ID of the plant instance. @@ -1345,63 +1370,79 @@ class PlantArchitecture{ void initializeAlmondTreeShoots(); - uint buildAlmondTree( const helios::vec3 &base_position, float age ); + uint buildAlmondTree( const helios::vec3 &base_position ); + + void initializeAppleTreeShoots(); + + uint buildAppleTree( const helios::vec3 &base_position ); void initializeAsparagusShoots(); - uint buildAsparagusPlant( const helios::vec3 &base_position, float age ); + uint buildAsparagusPlant( const helios::vec3 &base_position ); void initializeBindweedShoots(); - uint buildBindweedPlant( const helios::vec3 &base_position, float age ); + uint buildBindweedPlant( const helios::vec3 &base_position ); void initializeBeanShoots(); - uint buildBeanPlant( const helios::vec3 &base_position, float age ); + uint buildBeanPlant( const helios::vec3 &base_position ); void initializeCheeseweedShoots(); - uint buildCheeseweedPlant( const helios::vec3 &base_position, float age ); + uint buildCheeseweedPlant( const helios::vec3 &base_position ); void initializeCowpeaShoots(); - uint buildCowpeaPlant( const helios::vec3 &base_position, float age ); + uint buildCowpeaPlant( const helios::vec3 &base_position ); + + void initializeGrapevineVSPShoots(); + + uint buildGrapevineVSP( const helios::vec3 &base_position ); + + void initializeOliveTreeShoots(); + + uint buildOliveTree( const helios::vec3 &base_position ); + + void initializePistachioTreeShoots(); + + uint buildPistachioTree( const helios::vec3 &base_position ); void initializePuncturevineShoots(); - uint buildPuncturevinePlant( const helios::vec3 &base_position, float age ); + uint buildPuncturevinePlant( const helios::vec3 &base_position ); void initializeEasternRedbudShoots(); - uint buildEasternRedbudPlant( const helios::vec3 &base_position, float age ); + uint buildEasternRedbudPlant( const helios::vec3 &base_position ); void initializeRomaineLettuceShoots(); - uint buildRomaineLettucePlant( const helios::vec3 &base_position, float age ); + uint buildRomaineLettucePlant( const helios::vec3 &base_position ); void initializeSoybeanShoots(); - uint buildSoybeanPlant( const helios::vec3 &base_position, float age ); + uint buildSoybeanPlant( const helios::vec3 &base_position ); void initializeSorghumShoots(); - uint buildSorghumPlant( const helios::vec3 &base_position, float age ); + uint buildSorghumPlant( const helios::vec3 &base_position ); void initializeStrawberryShoots(); - uint buildStrawberryPlant( const helios::vec3 &base_position, float age ); + uint buildStrawberryPlant( const helios::vec3 &base_position ); void initializeSugarbeetShoots(); - uint buildSugarbeetPlant( const helios::vec3 &base_position, float age ); + uint buildSugarbeetPlant( const helios::vec3 &base_position ); void initializeTomatoShoots(); - uint buildTomatoPlant( const helios::vec3 &base_position, float age ); + uint buildTomatoPlant( const helios::vec3 &base_position ); void initializeWheatShoots(); - uint buildWheatPlant( const helios::vec3 &base_position, float age ); + uint buildWheatPlant( const helios::vec3 &base_position ); }; diff --git a/plugins/plantarchitecture/src/Assets.cpp b/plugins/plantarchitecture/src/Assets.cpp index 09679e826..7d4276cf2 100644 --- a/plugins/plantarchitecture/src/Assets.cpp +++ b/plugins/plantarchitecture/src/Assets.cpp @@ -102,9 +102,6 @@ uint buildGenericLeafPrototype(helios::Context *context_ptr, uint subdivisions, } uint AlmondLeafPrototype( helios::Context* context_ptr, uint subdivisions, int compound_leaf_index ){ -// std::vector UUIDs = context_ptr->loadOBJ( "plugins/plantarchitecture/assets/obj/AlmondLeaf.obj", make_vec3(0.,0,0), 0, nullrotation, RGB::black, "ZUP", true ); -// uint objID = context_ptr->addPolymeshObject( UUIDs ); -// return objID; std::string leaf_texture = "plugins/plantarchitecture/assets/textures/AlmondLeaf.png"; @@ -161,6 +158,63 @@ void AlmondPhytomerCallbackFunction( std::shared_ptr phytomer ){ } +uint AppleLeafPrototype( helios::Context* context_ptr, uint subdivisions, int compound_leaf_index ){ + + std::string leaf_texture = "plugins/plantarchitecture/assets/textures/AppleLeaf.png"; + + float leaf_aspect = 0.6; //ratio of leaf width to leaf length + + float midrib_fold = 0.2; //fraction of folding along midrib (=0 leaf is flat, =1 leaf is completely folded in half) + + float longitudinal_curvature = 0.1; //curvature factor along x-direction. (+curves upward, -curved downward) + + float lateral_curvature = 0.1; //curvature factor along y-direction. (+curves upward, -curved downward) + + uint objID = buildGenericLeafPrototype(context_ptr, subdivisions, leaf_texture, leaf_aspect, midrib_fold, longitudinal_curvature, lateral_curvature, 0, 0, 0, false); + + return objID; + +} + +uint AppleFruitPrototype( helios::Context* context_ptr, uint subdivisions, float time_since_fruit_set ){ + std::vector UUIDs = context_ptr->loadOBJ( "plugins/plantarchitecture/assets/obj/AppleFruit.obj", make_vec3(0.,0,0), 0,nullrotation, RGB::black, "ZUP", true ); + uint objID = context_ptr->addPolymeshObject( UUIDs ); + return objID; +} + +uint AppleFlowerPrototype( helios::Context* context_ptr, uint subdivisions, bool flower_is_open ){ + std::vector UUIDs = context_ptr->loadOBJ( "plugins/plantarchitecture/assets/obj/AlmondFlower.obj", make_vec3(0.0,0,0), 0,nullrotation, RGB::black, "ZUP", true ); + uint objID = context_ptr->addPolymeshObject( UUIDs ); + return objID; +} + +void AppledPhytomerCreationFunction( std::shared_ptr phytomer, uint shoot_node_index, uint parent_shoot_node_index, uint shoot_max_nodes, float plant_age ) { + + if( phytomer->internode_length_max < 0.01 ){ //spurs + phytomer->setInternodeMaxRadius( 0.005 ); + phytomer->setVegetativeBudState( BUD_DEAD ); + phytomer->scaleLeafPrototypeScale( 0.8 ); + phytomer->setFloralBudState( BUD_DEAD ); + } + + //blind nodes + if( shoot_node_index<3 ){ + phytomer->setVegetativeBudState( BUD_DEAD ); + phytomer->setFloralBudState( BUD_DEAD ); + } + +} + +void ApplePhytomerCallbackFunction( std::shared_ptr phytomer ){ + + if( phytomer->isdormant ){ + if( phytomer->shoot_index.x >= phytomer->shoot_index.y-3 && phytomer->internode_length_max > 0.01 ){ + phytomer->setVegetativeBudState( BUD_DORMANT ); //first two vegetative buds always break + } + } + +} + uint AsparagusLeafPrototype( helios::Context* context_ptr, uint subdivisions, int compound_leaf_index ){ float curve_magnitude = context_ptr->randu(0.f,0.2f); @@ -280,6 +334,9 @@ void BeanPhytomerCreationFunction( std::shared_ptr phytomer, uint shoo }else{ phytomer->setFloralBudState(BUD_DEAD); } + if( shoot_node_index<=1 && phytomer->rank == 0 ){ + phytomer->setVegetativeBudState(BUD_ACTIVE); + } //set leaf and internode scale based on position along the shoot float leaf_scale = fmin(1.f, 0.2 + 0.8 * plant_age / 15.f); @@ -402,6 +459,150 @@ void CowpeaPhytomerCreationFunction( std::shared_ptr phytomer, uint sh } +uint GrapevineLeafPrototype( helios::Context* context_ptr, uint subdivisions, int compound_leaf_index ){ + + std::string leaf_texture = "plugins/plantarchitecture/assets/textures/GrapeLeaf.png"; + + float leaf_aspect = 1.0; //ratio of leaf width to leaf length + + float midrib_fold = 0.3; //fraction of folding along midrib (=0 leaf is flat, =1 leaf is completely folded in half) + + float longitudinal_curvature = context_ptr->randu(-0.4f,0.4f); //curvature factor along x-direction. (+curves upward, -curved downward) + + float lateral_curvature = 0.; //curvature factor along y-direction. (+curves upward, -curved downward) + + float wave_period = 0.3f; //period factor of leaf waves + float wave_amplitude = 0.1f; // amplitude of leaf waves + + uint objID = buildGenericLeafPrototype(context_ptr, subdivisions, leaf_texture, leaf_aspect, midrib_fold, longitudinal_curvature, lateral_curvature, 0, wave_period, wave_amplitude, false); + context_ptr->translateObject( objID, make_vec3(-0.3,0,0) ); + + return objID; +} + +// Function to generate random float between min and max +float random_float(float min, float max) { + return min + static_cast(rand()) / (static_cast(RAND_MAX/(max-min))); +} + +// Function to check if two spheres overlap +bool spheres_overlap(const helios::vec3& center1, float radius1, const helios::vec3& center2, float radius2) { + float distance = std::sqrt( + std::pow(center1.x - center2.x, 2) + + std::pow(center1.y - center2.y, 2) + + std::pow(center1.z - center2.z, 2) + ); + return distance < (radius1 + radius2); +} + +uint GrapevineFruitPrototype( helios::Context* context_ptr, uint subdivisions, float time_since_fruit_set ){ + + int num_grapes = 75; + float height = 7.0f; // Height of the cluster + float base_radius = 2.5f; // Base radius of the cluster + float taper_factor = 0.6f; // Taper factor (higher means more taper) + float grape_radius = 0.35f; // Fixed radius for each grape + + std::vector> grapes; + float z_step = height / num_grapes; + + // Place the first grape at the bottom center + helios::vec3 first_center(0.0f, 0.0f, 0.0f); + grapes.push_back({first_center, grape_radius}); + + // Attempt to place each subsequent grape close to an existing grape + int max_attempts = 100; // Number of retries to find a tight fit + + for (int i = 1; i < num_grapes; ++i) { + float z = i * z_step; + // Tapered radius based on height (denser at the top, sparser at the bottom) + float taper_radius = base_radius * (1.0f - taper_factor * (z / height)); + + bool placed = false; + int attempts = 0; + while (!placed && attempts < max_attempts) { + // Randomly select an existing grape as the reference point + int reference_idx = rand() % grapes.size(); + const helios::vec3& reference_center = grapes[reference_idx].first; + + // Pick a random offset direction from the reference grape + float angle = random_float(0, 2 * M_PI); + float distance = random_float(1.2 * grape_radius, 1.3 * grape_radius); // Keep grapes close but not overlapping + + // Compute the new potential center for the grape + helios::vec3 new_center( + reference_center.x + distance * cos(angle), + reference_center.y + distance * sin(angle), + random_float(z - 0.5f * z_step, z + 0.5f * z_step) + ); + + // Check that the new center is within the allowable radius (for tapering) + float new_center_distance = std::sqrt(new_center.x * new_center.x + new_center.y * new_center.y); + if (new_center_distance > taper_radius) { + attempts++; + continue; // Skip if the new position exceeds the tapered radius + } + + // Check for collisions with existing grapes + bool collision = false; + for (const auto& grape : grapes) { + if (spheres_overlap(new_center, grape_radius, grape.first, grape.second)) { + collision = true; + break; + } + } + + // If no collision, place the grape + if (!collision) { + grapes.push_back({new_center, grape_radius}); + placed = true; + } + + attempts++; + } + + } + + std::vector UUIDs; + for (const auto& grape : grapes) { + std::vector UUIDs_tmp = context_ptr->addSphere( 10, grape.first, grape.second, "../../../plugins/plantarchitecture/assets/textures/GrapeBerry.jpg" ); + UUIDs.insert(UUIDs.end(), UUIDs_tmp.begin(), UUIDs_tmp.end()); + } + + context_ptr->rotatePrimitive( UUIDs, -0.5*M_PI, "y"); + + uint objID = context_ptr->addPolymeshObject( UUIDs ); + return objID; +} + +//uint GrapevineFlowerPrototype( helios::Context* context_ptr, uint subdivisions, bool flower_is_open ){ +// std::vector UUIDs = context_ptr->loadOBJ( "plugins/plantarchitecture/assets/obj/OliveFlower_open.obj", make_vec3(0.0,0,0), 0,nullrotation, RGB::black, "ZUP", true ); +// uint objID = context_ptr->addPolymeshObject( UUIDs ); +// return objID; +//} + +void GrapevinePhytomerCreationFunction( std::shared_ptr phytomer, uint shoot_node_index, uint parent_shoot_node_index, uint shoot_max_nodes, float plant_age ) { + + //blind nodes + if( shoot_node_index>=2 ){ + phytomer->setFloralBudState( BUD_DEAD ); + } + +} + +//void GrapevinePhytomerCallbackFunction( std::shared_ptr phytomer ){ +// +// if( phytomer->isdormant ){ +// if( phytomer->shoot_index.x >= phytomer->shoot_index.y-1 ){ +// phytomer->setVegetativeBudState( BUD_DORMANT ); //first vegetative buds always break +// } +// if( phytomer->shoot_index.x <= phytomer->shoot_index.y-4 ){ +// phytomer->setFloralBudState( BUD_DORMANT ); //first vegetative buds always break +// } +// } +// +//} + uint PuncturevineLeafPrototype( helios::Context* context_ptr, uint subdivisions, int compound_leaf_index ){ std::string leaf_texture = "plugins/plantarchitecture/assets/textures/PuncturevineLeaf.png"; @@ -418,6 +619,113 @@ uint PuncturevineLeafPrototype( helios::Context* context_ptr, uint subdivisions, } +uint OliveLeafPrototype( helios::Context* context_ptr, uint subdivisions, int compound_leaf_index ){ + +// std::string leaf_texture = "plugins/plantarchitecture/assets/textures/OliveLeaf.png"; +// +// float leaf_aspect = 0.4; //ratio of leaf width to leaf length +// +// float midrib_fold = 0.; //fraction of folding along midrib (=0 leaf is flat, =1 leaf is completely folded in half) +// +// float longitudinal_curvature = 0.05; //curvature factor along x-direction. (+curves upward, -curved downward) +// +// float lateral_curvature = 0.1; //curvature factor along y-direction. (+curves upward, -curved downward) +// +// uint objID = buildGenericLeafPrototype(context_ptr, subdivisions, leaf_texture, leaf_aspect, midrib_fold, longitudinal_curvature, lateral_curvature, 0, 0, 0, false); + + std::vector UUIDs_upper = context_ptr->addTile(make_vec3(0.5,0,0), make_vec2(1,0.2), nullrotation, make_int2(subdivisions,subdivisions), "plugins/plantarchitecture/assets/textures/OliveLeaf_upper.png"); + std::vector UUIDs_lower = context_ptr->addTile(make_vec3(0.5,0,-1e-4), make_vec2(1,0.2), nullrotation, make_int2(subdivisions,subdivisions), "plugins/plantarchitecture/assets/textures/OliveLeaf_lower.png"); + context_ptr->rotatePrimitive( UUIDs_lower, M_PI, "x" ); + + UUIDs_upper.insert(UUIDs_upper.end(), UUIDs_lower.begin(), UUIDs_lower.end()); + uint objID = context_ptr->addPolymeshObject( UUIDs_upper ); + return objID; +} + +uint OliveFruitPrototype( helios::Context* context_ptr, uint subdivisions, float time_since_fruit_set ){ + std::vector UUIDs = context_ptr->loadOBJ( "plugins/plantarchitecture/assets/obj/OliveFruit.obj", make_vec3(0.,0,0), 0,nullrotation, RGB::black, "ZUP", true ); + uint objID = context_ptr->addPolymeshObject( UUIDs ); + std::vector UUIDs_fruit = context_ptr->filterPrimitivesByData( context_ptr->getObjectPrimitiveUUIDs(objID), "object_label", "fruit"); +// context_ptr->setPrimitiveColor( UUIDs_fruit, make_RGBcolor(0.3,0.15,0.2)); //purple + context_ptr->setPrimitiveColor( UUIDs_fruit, make_RGBcolor(0.65,0.7,0.4)); //green + return objID; +} + +uint OliveFlowerPrototype( helios::Context* context_ptr, uint subdivisions, bool flower_is_open ){ + std::vector UUIDs = context_ptr->loadOBJ( "plugins/plantarchitecture/assets/obj/OliveFlower_open.obj", make_vec3(0.0,0,0), 0,nullrotation, RGB::black, "ZUP", true ); + uint objID = context_ptr->addPolymeshObject( UUIDs ); + return objID; +} + +void OlivePhytomerCreationFunction( std::shared_ptr phytomer, uint shoot_node_index, uint parent_shoot_node_index, uint shoot_max_nodes, float plant_age ) { + +} + +void OlivePhytomerCallbackFunction( std::shared_ptr phytomer ){ + + if( phytomer->isdormant ){ + if( phytomer->shoot_index.x < phytomer->shoot_index.y-8 ){ + phytomer->setFloralBudState( BUD_DEAD ); + } + } + +} + +uint PistachioLeafPrototype( helios::Context* context_ptr, uint subdivisions, int compound_leaf_index ){ + + std::string leaf_texture = "plugins/plantarchitecture/assets/textures/PistachioLeaf.png"; + + float leaf_aspect = 0.6; //ratio of leaf width to leaf length + + float midrib_fold = 0.; //fraction of folding along midrib (=0 leaf is flat, =1 leaf is completely folded in half) + + float longitudinal_curvature = context_ptr->randu(-0.4f,0.4f); //curvature factor along x-direction. (+curves upward, -curved downward) + + float lateral_curvature = 0.; //curvature factor along y-direction. (+curves upward, -curved downward) + + float wave_period = 0.3f; //period factor of leaf waves + float wave_amplitude = 0.1f; // amplitude of leaf waves + + uint objID = buildGenericLeafPrototype(context_ptr, subdivisions, leaf_texture, leaf_aspect, midrib_fold, longitudinal_curvature, lateral_curvature, 0, wave_period, wave_amplitude, false); + + return objID; +} + +uint PistachioFruitPrototype( helios::Context* context_ptr, uint subdivisions, float time_since_fruit_set ){ + std::vector UUIDs = context_ptr->loadOBJ( "plugins/plantarchitecture/assets/obj/PistachioNut.obj", make_vec3(0.,0,0), 0,nullrotation, RGB::black, "ZUP", true ); + uint objID = context_ptr->addPolymeshObject( UUIDs ); + return objID; +} + +uint PistachioFlowerPrototype( helios::Context* context_ptr, uint subdivisions, bool flower_is_open ){ + std::vector UUIDs = context_ptr->loadOBJ( "plugins/plantarchitecture/assets/obj/OliveFlower_open.obj", make_vec3(0.0,0,0), 0,nullrotation, RGB::black, "ZUP", true ); + uint objID = context_ptr->addPolymeshObject( UUIDs ); + return objID; +} + +void PistachioPhytomerCreationFunction( std::shared_ptr phytomer, uint shoot_node_index, uint parent_shoot_node_index, uint shoot_max_nodes, float plant_age ) { + + //blind nodes + if( shoot_node_index<2 ){ + phytomer->setVegetativeBudState( BUD_DEAD ); + phytomer->setFloralBudState( BUD_DEAD ); + } + +} + +void PistachioPhytomerCallbackFunction( std::shared_ptr phytomer ){ + + if( phytomer->isdormant ){ + if( phytomer->shoot_index.x >= phytomer->shoot_index.y-1 ){ + phytomer->setVegetativeBudState( BUD_DORMANT ); //first vegetative buds always break + } + if( phytomer->shoot_index.x <= phytomer->shoot_index.y-4 ){ + phytomer->setFloralBudState( BUD_DORMANT ); //first vegetative buds always break + } + } + +} + uint PuncturevineFlowerPrototype( helios::Context* context_ptr, uint subdivisions, bool flower_is_open ){ std::vector UUIDs = context_ptr->loadOBJ( "plugins/plantarchitecture/assets/obj/PuncturevineFlower.obj", make_vec3(0.0,0,0), 0,nullrotation, RGB::black, "ZUP", true ); uint objID = context_ptr->addPolymeshObject( UUIDs ); @@ -572,8 +880,8 @@ uint SorghumPaniclePrototype( helios::Context* context_ptr, uint subdivisions, f z = n*height_seed/float(subdivisions-1); } - float angle = n * M_PI /float(subdivisions-1); - float dr = 0.5f * width_seed * sin(angle); + float angle = float(n) * M_PI /float(subdivisions-1); + float dr = std::fmax(0.f, 0.5f * width_seed * sin(angle)); nodes_panicle.push_back(make_vec3(x, y, z)); radius_panicle.push_back(dr); diff --git a/plugins/plantarchitecture/src/CarbohydrateModel.cpp b/plugins/plantarchitecture/src/CarbohydrateModel.cpp index d76bd9371..ccb3a35ab 100644 --- a/plugins/plantarchitecture/src/CarbohydrateModel.cpp +++ b/plugins/plantarchitecture/src/CarbohydrateModel.cpp @@ -184,7 +184,9 @@ void PlantArchitecture::subtractShootMaintenanceCarbon(float dt ) { auto shoot_tree = &plant.second.shoot_tree; for (auto &shoot: *shoot_tree) { - shoot->carbohydrate_pool_molC -= context_ptr->getTubeObjectVolume(shoot->internode_tube_objID) * rho_cw * stem_maintainance_respiration_rate * dt; + if( context_ptr->doesObjectExist(shoot->internode_tube_objID) ) { + shoot->carbohydrate_pool_molC -= context_ptr->getTubeObjectVolume(shoot->internode_tube_objID) * rho_cw * stem_maintainance_respiration_rate * dt; + } } } @@ -257,11 +259,12 @@ void PlantArchitecture::checkCarbonPool_abortbuds(){ uint parentID = shoot->parent_shoot_ID; - for(auto &child : shoot->childIDs ){ - - int node_number = child.first; - int child_ID = child.second; + for(auto node : shoot->childIDs ){ + for( int childID : node.second ){ + int node_number = node.first; + int child_ID = childID; + } } diff --git a/plugins/plantarchitecture/src/InputOutput.cpp b/plugins/plantarchitecture/src/InputOutput.cpp index 0d4465e06..a300a9df0 100644 --- a/plugins/plantarchitecture/src/InputOutput.cpp +++ b/plugins/plantarchitecture/src/InputOutput.cpp @@ -44,7 +44,9 @@ std::string PlantArchitecture::makeShootString(const std::string ¤t_string outstring += "Leaf(" + std::to_string(phytomer->leaf_size_max.at(petiole).front()*phytomer->current_leaf_scale_factor ) + "," + std::to_string( rad2deg(phytomer->leaf_rotation.at(petiole).front().pitch) ) + "," + std::to_string( rad2deg(phytomer->leaf_rotation.at(petiole).front().yaw) ) + "," + std::to_string( rad2deg(phytomer->leaf_rotation.at(petiole).front().roll) ) + ")"; if( shoot->childIDs.find(node_number)!=shoot->childIDs.end() ){ - outstring = makeShootString(outstring, shoot_tree.at(shoot->childIDs.at(node_number)), shoot_tree ); + for( int childID: shoot->childIDs.at(node_number) ) { + outstring = makeShootString(outstring, shoot_tree.at(childID), shoot_tree); + } } // } diff --git a/plugins/plantarchitecture/src/PlantArchitecture.cpp b/plugins/plantarchitecture/src/PlantArchitecture.cpp index 322308177..1e539d156 100644 --- a/plugins/plantarchitecture/src/PlantArchitecture.cpp +++ b/plugins/plantarchitecture/src/PlantArchitecture.cpp @@ -142,9 +142,8 @@ PhytomerParameters::PhytomerParameters( std::minstd_rand0 *generator ) { peduncle.radial_subdivisions = 7; //--- inflorescence ---// - inflorescence.flowers_per_rachis.initialize(1, generator); + inflorescence.flowers_per_peduncle.initialize(1, generator); inflorescence.flower_offset.initialize(0, generator); - inflorescence.flower_arrangement_pattern = "alternate"; inflorescence.pitch.initialize(0,generator); inflorescence.roll.initialize(0,generator); inflorescence.flower_prototype_scale.initialize(0.0075,generator); @@ -184,7 +183,7 @@ ShootParameters::ShootParameters( std::minstd_rand0 *generator ) { leaf_flush_count = 1; elongation_rate.initialize(0.2, generator); - girth_growth_rate.initialize(0, generator); + girth_area_factor.initialize(0, generator); vegetative_bud_break_time.initialize(5, generator); vegetative_bud_break_probability.initialize(0,generator); @@ -433,11 +432,29 @@ int Shoot::appendPhytomer(float internode_radius, float internode_length_max, fl //Initialize phytomer vegetative bud types and state for( auto& petiole : phytomer->axillary_vegetative_buds ) { +// for (auto &vbud: petiole) { +// +// //sample the bud shoot type and initialize its state +// std::string child_shoot_type_label; +// if (sampleChildShootType(child_shoot_type_label)) { +// phytomer->setVegetativeBudState( BUD_DORMANT, vbud ); +// } else { +// phytomer->setVegetativeBudState( BUD_DEAD, vbud ); +// } +// vbud.shoot_type_label = child_shoot_type_label; +// +// // if the shoot type does not require dormancy, bud should be set to active +// if (!shoot_parameters.growth_requires_dormancy && vbud.state != BUD_DEAD) { +// phytomer->setVegetativeBudState( BUD_ACTIVE, vbud ); +// } +// } + + //sample the bud shoot type and initialize its state + std::string child_shoot_type_label; + bool child_bud_breaks = sampleChildShootType(child_shoot_type_label); for (auto &vbud: petiole) { - //sample the bud shoot type and initialize its state - std::string child_shoot_type_label; - if (sampleChildShootType(child_shoot_type_label)) { + if ( child_bud_breaks ) { phytomer->setVegetativeBudState( BUD_DORMANT, vbud ); } else { phytomer->setVegetativeBudState( BUD_DEAD, vbud ); @@ -448,7 +465,6 @@ int Shoot::appendPhytomer(float internode_radius, float internode_length_max, fl if (!shoot_parameters.growth_requires_dormancy && vbud.state != BUD_DEAD) { phytomer->setVegetativeBudState( BUD_ACTIVE, vbud ); } - } } @@ -583,7 +599,9 @@ void Shoot::makeDormant(){ } } } - phytomer->removeLeaf(); + if( !plantarchitecture_ptr->plant_instances.at(plantID).is_evergreen ) { + phytomer->removeLeaf(); + } phytomer->time_since_dormancy = 0; phytomer->isdormant = true; } @@ -697,31 +715,11 @@ void Shoot::updateShootNodes(bool update_context_geometry) { phytomers.at(p)->setPetioleBase( petiole_base ); } - //update terminal buds -// for( int p=0; pfloral_buds.empty() || phytomer->floral_buds.back().empty() ){ -// continue; -// } -// FloralBud fbud = phytomer->floral_buds.back().back(); -// if (fbud.isterminal) { -// vec3 shift = fbud.base_position; -// fbud.base_position = shoot_internode_vertices.back().back(); -// shift = fbud.base_position - shift; -// context_ptr->translateObject(fbud.inflorescence_objIDs, shift); -// for (auto &base: fbud.inflorescence_bases) { -// base += shift; -// } -// if (phytomer->build_context_geometry_peduncle) { -// context_ptr->translateObject(fbud.peduncle_objIDs, shift); -// } -// } -// } - // update child shoot origins - for( auto child : childIDs ){ - uint child_shoot_ID = child.second; - plantarchitecture_ptr->plant_instances.at(plantID).shoot_tree.at(child_shoot_ID)->updateShootNodes(update_context_geometry); + for( auto node : childIDs ){ + for( int child_shoot_ID : node.second ) { + plantarchitecture_ptr->plant_instances.at(plantID).shoot_tree.at(child_shoot_ID)->updateShootNodes(update_context_geometry); + } } } @@ -741,6 +739,39 @@ helios::vec3 Shoot::getShootAxisVector( float shoot_fraction ) const{ } +float Shoot::sumShootLeafArea( uint start_node_index ) const{ + + if( start_node_index>=phytomers.size() ){ + helios_runtime_error("ERROR (Shoot::sumShootLeafArea): Start node index out of range."); + } + + float area = 0; + + for( uint p=start_node_index; pleaf_objIDs ){ + for( uint objID : petiole ) { + if( context_ptr->doesObjectExist(objID) ) { + area += context_ptr->getObjectArea(objID); + } + } + } + + //call recursively for child shoots + if( childIDs.find(p)!=childIDs.end() ){ + for( int child_shoot_ID : childIDs.at(p) ) { + area += plantarchitecture_ptr->plant_instances.at(plantID).shoot_tree.at(child_shoot_ID)->sumShootLeafArea(0); + } + } + + } + + return area; + +} + Phytomer::Phytomer(const PhytomerParameters ¶ms, Shoot *parent_shoot, uint phytomer_index, const helios::vec3 &parent_internode_axis, const helios::vec3 &parent_petiole_axis, helios::vec3 internode_base_origin, const AxisRotation &shoot_base_rotation, float internode_radius, float internode_length_max, float internode_length_scale_factor_fraction, float leaf_scale_factor_fraction, uint rank, PlantArchitecture *plantarchitecture_ptr, helios::Context *context_ptr) @@ -870,9 +901,10 @@ Phytomer::Phytomer(const PhytomerParameters ¶ms, Shoot *parent_shoot, uint p //internode roll rotation for shoot base rotation float roll_nudge = 0.f; - if( shoot_base_rotation.roll/180.f == floor(shoot_base_rotation.roll/180.f) ) { - roll_nudge = 0.2; - } + //\todo Not clear if this is still needed. It causes problems when you want to plant base roll to be exactly 0. +// if( shoot_base_rotation.roll/180.f == floor(shoot_base_rotation.roll/180.f) ) { +// roll_nudge = 0.2; +// } if( shoot_base_rotation.roll!=0.f || roll_nudge!=0.f ){ petiole_rotation_axis = rotatePointAboutLine(petiole_rotation_axis, nullorigin, parent_internode_axis,shoot_base_rotation.roll + roll_nudge ); //small additional rotation is to make sure the petiole is not exactly vertical internode_axis = rotatePointAboutLine(internode_axis, nullorigin, parent_internode_axis,shoot_base_rotation.roll + roll_nudge ); @@ -946,9 +978,9 @@ Phytomer::Phytomer(const PhytomerParameters ¶ms, Shoot *parent_shoot, uint p if( shoot_index.x==0 ) { //first phytomer on shoot parent_shoot_ptr->shoot_internode_vertices.push_back(phytomer_internode_vertices); parent_shoot_ptr->shoot_internode_radii.push_back(phytomer_internode_radii); - }else{ - parent_shoot_ptr->shoot_internode_vertices.push_back({phytomer_internode_vertices.begin()+1,phytomer_internode_vertices.end()}); - parent_shoot_ptr->shoot_internode_radii.push_back({phytomer_internode_radii.begin()+1,phytomer_internode_radii.end()}); + }else{ //if not the first phytomer on shoot, don't insert the first node because it's already defined on the previous phytomer + parent_shoot_ptr->shoot_internode_vertices.emplace_back(phytomer_internode_vertices.begin()+1,phytomer_internode_vertices.end()); + parent_shoot_ptr->shoot_internode_radii.emplace_back(phytomer_internode_radii.begin()+1,phytomer_internode_radii.end()); } //build internode context geometry @@ -1209,7 +1241,7 @@ void Phytomer::updateInflorescence(FloralBud &fbud) { std::vector peduncle_radii(phytomer_parameters.peduncle.length_segments + 1); peduncle_radii.at(0) = phytomer_parameters.peduncle.radius.val(); std::vector peduncle_colors(phytomer_parameters.peduncle.length_segments + 1); - peduncle_colors.at(0) = phytomer_parameters.internode.color; + peduncle_colors.at(0) = phytomer_parameters.peduncle.color; vec3 peduncle_axis = getAxisVector(1.f, getInternodeNodePositions() ); @@ -1284,7 +1316,7 @@ void Phytomer::updateInflorescence(FloralBud &fbud) { } } - for(int fruit=0; fruit < phytomer_parameters.inflorescence.flowers_per_rachis.val(); fruit++ ){ + for(int fruit=0; fruit < phytomer_parameters.inflorescence.flowers_per_peduncle.val(); fruit++ ){ uint objID_fruit; helios::vec3 fruit_scale; @@ -1321,23 +1353,16 @@ void Phytomer::updateInflorescence(FloralBud &fbud) { phytomer_parameters.inflorescence.flower_prototype_scale.resample(); } - float ind_from_tip = fabs(fruit- float(phytomer_parameters.inflorescence.flowers_per_rachis.val() - 1) / 2.f); + float ind_from_tip = fabs(fruit - float(phytomer_parameters.inflorescence.flowers_per_peduncle.val() - 1) / float(phytomer_parameters.petiole.petioles_per_internode)); context_ptr->scaleObject( objID_fruit, fruit_scale ); //if we have more than one flower/fruit, we need to adjust the base position of the fruit vec3 fruit_base = peduncle_vertices.back(); float frac = 1; - if(phytomer_parameters.inflorescence.flowers_per_rachis.val() > 1 && phytomer_parameters.inflorescence.flower_offset.val() > 0 ){ + if(phytomer_parameters.inflorescence.flowers_per_peduncle.val() > 1 && phytomer_parameters.inflorescence.flower_offset.val() > 0 ){ if( ind_from_tip != 0 ) { - float offset = 0; - if(phytomer_parameters.inflorescence.flower_arrangement_pattern == "opposite" ){ - offset = (ind_from_tip - 0.5f) * phytomer_parameters.inflorescence.flower_offset.val() * phytomer_parameters.peduncle.length.val(); - }else if(phytomer_parameters.inflorescence.flower_arrangement_pattern == "alternate" ){ - offset = (ind_from_tip - 0.5f + 0.5f*float(fruit> float(phytomer_parameters.inflorescence.flowers_per_rachis.val() - 1) / 2.f) ) * phytomer_parameters.inflorescence.flower_offset.val() * phytomer_parameters.peduncle.length.val(); - }else{ - helios_runtime_error("ERROR (PlantArchitecture::updateInflorescence): Invalid fruit arrangement pattern."); - } + float offset = offset = (ind_from_tip - 0.5f) * phytomer_parameters.inflorescence.flower_offset.val() * phytomer_parameters.peduncle.length.val(); if( phytomer_parameters.peduncle.length.val()>0 ){ frac = 1.f - offset / phytomer_parameters.peduncle.length.val(); } @@ -1347,16 +1372,13 @@ void Phytomer::updateInflorescence(FloralBud &fbud) { //if we have more than one flower/fruit, we need to adjust the rotation about the peduncle float compound_rotation = 0; - if(phytomer_parameters.inflorescence.flowers_per_rachis.val() > 1 ) { + if(phytomer_parameters.inflorescence.flowers_per_peduncle.val() > 1 ) { if (phytomer_parameters.inflorescence.flower_offset.val() == 0) { //flowers/fruit are all at the tip, so just equally distribute them about the azimuth - float dphi = M_PI / (floor(0.5 * float(phytomer_parameters.inflorescence.flowers_per_rachis.val() - 1)) + 1); + float dphi = M_PI / (floor(0.5 * float(phytomer_parameters.inflorescence.flowers_per_peduncle.val() - 1)) + 1); compound_rotation = -float(M_PI) + dphi * (fruit + 0.5f); } else { - if( fruit < float(phytomer_parameters.inflorescence.flowers_per_rachis.val() - 1) / 2.f ) { - compound_rotation = 0; - }else { - compound_rotation = M_PI; - } + compound_rotation = deg2rad(phytomer_parameters.internode.phyllotactic_angle.val())*float(ind_from_tip) + 2.f*M_PI/float(phytomer_parameters.petiole.petioles_per_internode)*float(fruit); + phytomer_parameters.internode.phyllotactic_angle.resample(); } } @@ -1399,7 +1421,7 @@ void Phytomer::updateInflorescence(FloralBud &fbud) { fbud.inflorescence_objIDs.push_back(objID_fruit ); } - phytomer_parameters.inflorescence.flowers_per_rachis.resample(); + phytomer_parameters.inflorescence.flowers_per_peduncle.resample(); phytomer_parameters.peduncle.roll.resample(); if( plantarchitecture_ptr->output_object_data.at("rank") ) { @@ -1721,6 +1743,14 @@ void Phytomer::setInflorescenceScaleFraction(FloralBud &fbud, float inflorescenc void Phytomer::removeLeaf(){ + this->petiole_radii.resize(0); +// this->petiole_vertices.resize(0); + this->petiole_colors.resize(0); + this->petiole_length.resize(0); + this->leaf_size_max.resize(0); + this->leaf_rotation.resize(0); + this->leaf_bases.resize(0); + context_ptr->deleteObject(flatten(leaf_objIDs)); leaf_objIDs.resize(0); leaf_bases.resize(0); @@ -1733,7 +1763,11 @@ void Phytomer::removeLeaf(){ } bool Phytomer::hasLeaf() const{ - return !leaf_objIDs.empty(); + return !leaf_bases.empty(); +} + +float Phytomer::calculateDownstreamLeafArea() const{ + return parent_shoot_ptr->sumShootLeafArea( shoot_index.x ); } Shoot::Shoot(uint plant_ID, int shoot_ID, int parent_shoot_ID, uint parent_node, uint parent_petiole_index, uint rank, const helios::vec3 &shoot_base_position, const AxisRotation &shoot_base_rotation, uint current_node_number, @@ -1746,7 +1780,7 @@ Shoot::Shoot(uint plant_ID, int shoot_ID, int parent_shoot_ID, uint parent_node, context_ptr = plant_architecture_ptr->context_ptr; if( parent_shoot_ID>=0 ) { - plant_architecture_ptr->plant_instances.at(plantID).shoot_tree.at(parent_shoot_ID)->childIDs[(int) parent_node_index] = shoot_ID; + plant_architecture_ptr->plant_instances.at(plantID).shoot_tree.at(parent_shoot_ID)->childIDs[(int) parent_node_index].push_back(shoot_ID); } } @@ -1810,7 +1844,6 @@ bool Shoot::sampleChildShootType(std::string &child_shoot_type_label) const{ bool bud_break = true; if (context_ptr->randu() > plantarchitecture_ptr->shoot_types.at(shoot_ptr->shoot_type_label).vegetative_bud_break_probability.val() ) { bud_break = false; -// child_shoot_type_label = ""; } @@ -1971,7 +2004,7 @@ uint PlantArchitecture::addChildShoot(uint plantID, int parent_shoot_ID, uint pa // Shift the shoot base position outward by the parent internode radius vec3 petiole_axis = parent_shoot_ptr->phytomers.at(parent_node_index)->getPetioleAxisVector(0,petiole_index); - shoot_base_position += 0.9f * petiole_axis * parent_shoot_ptr->phytomers.at(parent_node_index)->petiole_radii.at(petiole_index).back(); + shoot_base_position += 0.9f * petiole_axis * parent_shoot_ptr->phytomers.at(parent_node_index)->getInternodeRadius(1.f); // Create the new shoot auto* shoot_new = (new Shoot(plantID, childID, parent_shoot_ID, parent_node_index, petiole_index, parent_rank + 1, shoot_base_position, shoot_base_rotation, current_node_number, internode_length_max, shoot_parameters, shoot_type_label, this)); @@ -2036,11 +2069,6 @@ int PlantArchitecture::appendPhytomerToShoot(uint plantID, uint shootID, const P auto current_shoot_ptr = plant_instances.at(plantID).shoot_tree.at(shootID); - //The base position of this phytomer is the last vertex position of the prior phytomer on the shoot - vec3 base_position = current_shoot_ptr->shoot_internode_vertices.back().back(); - //The base rotation of this phytomer is the base rotation of the current shoot (the phytomer will be further rotated in the Phytomer constructor) - AxisRotation base_rotation = current_shoot_ptr->base_rotation; - int pID = current_shoot_ptr->appendPhytomer(internode_radius, internode_length_max, internode_length_scale_factor_fraction, leaf_scale_factor_fraction); current_shoot_ptr->current_node_number ++; @@ -2106,11 +2134,51 @@ void PlantArchitecture::enableGroundClipping( float ground_height ){ ground_clipping_height = ground_height; } -void PlantArchitecture::incrementPhytomerInternodeGirth(uint plantID, uint shootID, uint node_number, float girth_change, bool update_context_geometry) { +//void PlantArchitecture::incrementPhytomerInternodeGirth(uint plantID, uint shootID, uint node_number, float girth_change, bool update_context_geometry) { +// +// if( girth_change==0 ){ +// return; +// } +// +// if( plant_instances.find(plantID) == plant_instances.end() ){ +// helios_runtime_error("ERROR (PlantArchitecture::incrementPhytomerInternodeGirth): Plant with ID of " + std::to_string(plantID) + " does not exist."); +// } +// +// auto shoot = plant_instances.at(plantID).shoot_tree.at(shootID); +// +// if( shootID>=plant_instances.at(plantID).shoot_tree.size() ){ +// helios_runtime_error("ERROR (PlantArchitecture::incrementPhytomerInternodeGirth): Shoot with ID of " + std::to_string(shootID) + " does not exist."); +// }else if( node_number>=shoot->current_node_number ){ +// helios_runtime_error("ERROR (PlantArchitecture::incrementPhytomerInternodeGirth): Cannot scale internode " + std::to_string(node_number) + " because there are only " + std::to_string(shoot->current_node_number) + " nodes in this shoot."); +// } +// +// auto phytomer = shoot->phytomers.at(node_number); +// +// // Scale the girth of the internode +// auto &segment = shoot->shoot_internode_radii.at(node_number); +// for( float &radius : segment ) { +// +// float taper = 1.f - 0.5f * float(node_number) / float(shoot->current_node_number); +// +// if (radius * girth_change > phytomer->internode_radius_max) { +// girth_change = phytomer->internode_radius_max / radius; +// radius = phytomer->internode_radius_max; +// }else if( girth_change>1.f ) { +// radius *= 1.f + (girth_change - 1.f) * taper; +// }else{ +// radius *= girth_change; +// } +// +// } +// +// +// if( update_context_geometry ){ +// context_ptr->setTubeRadii(shoot->internode_tube_objID, flatten(shoot->shoot_internode_radii) ); +// } +// +//} - if( girth_change==0 ){ - return; - } +void PlantArchitecture::incrementPhytomerInternodeGirth(uint plantID, uint shootID, uint node_number, bool update_context_geometry) { if( plant_instances.find(plantID) == plant_instances.end() ){ helios_runtime_error("ERROR (PlantArchitecture::incrementPhytomerInternodeGirth): Plant with ID of " + std::to_string(plantID) + " does not exist."); @@ -2126,100 +2194,26 @@ void PlantArchitecture::incrementPhytomerInternodeGirth(uint plantID, uint shoot auto phytomer = shoot->phytomers.at(node_number); - // Scale the girth of the internode - auto &segment = shoot->shoot_internode_radii.at(node_number); - for( float &radius : segment ) { + float leaf_area = phytomer->calculateDownstreamLeafArea(); - float taper = 1.f - 0.5f * float(node_number) / float(shoot->current_node_number); + float internode_area = phytomer->parent_shoot_ptr->shoot_parameters.girth_area_factor.val()*leaf_area*1e-4; + phytomer->parent_shoot_ptr->shoot_parameters.girth_area_factor.resample(); - if (radius * girth_change > phytomer->internode_radius_max) { - girth_change = phytomer->internode_radius_max / radius; - radius = phytomer->internode_radius_max; - }else if( girth_change>1.f ) { - radius *= 1.f + (girth_change - 1.f) * taper; - }else{ - radius *= girth_change; - } + float phytomer_radius = sqrtf(internode_area / M_PI); + auto &segment = shoot->shoot_internode_radii.at(node_number); + for( float &radius : segment ) { + if( phytomer_radius > radius ) { //radius should only increase + radius = phytomer_radius; + } } - if( update_context_geometry ){ context_ptr->setTubeRadii(shoot->internode_tube_objID, flatten(shoot->shoot_internode_radii) ); } } -void PlantArchitecture::updateShootInternodeLength(uint plantID, uint shootID, float dt, bool update_context_geometry) { - - if (plant_instances.find(plantID) == plant_instances.end()) { - helios_runtime_error("ERROR (PlantArchitecture::updateShootInternodeLength): Plant with ID of " + std::to_string(plantID) + " does not exist."); - } - - auto current_shoot = plant_instances.at(plantID).shoot_tree.at(shootID); - - if (shootID >= plant_instances.at(plantID).shoot_tree.size()) { - helios_runtime_error("ERROR (PlantArchitecture::updateShootInternodeLength): Shoot with ID of " + std::to_string(shootID) + " does not exist."); - } - if (dt < 0 || dt > 1) { - std::cerr << "WARNING (PlantArchitecture::updateShootInternodeLength): Internode scaling factor was outside the range of 0 to 1. No scaling was applied." << std::endl; - return; - } - - std::vector internode_vertices_flat = flatten(current_shoot->shoot_internode_vertices); - - uint Nphytomers = current_shoot->shoot_internode_vertices.size(); - - int segment_global = 0; - for (int p = 0; p < Nphytomers; p++) { - - auto phytomer = current_shoot->phytomers.at(p); - - float dL_internode = dt * current_shoot->shoot_parameters.elongation_rate.val() * phytomer->internode_length_max; - float length_scale = fmin(1.f, (phytomer->getInternodeLength() + dL_internode) / phytomer->internode_length_max); - -// std::cout << "Phytomer " << p << " length scale: " << length_scale << " " << dL_internode << " " << phytomer->getInternodeLength() << std::endl; - - for (int s = 0; s < current_shoot->shoot_internode_vertices.at(p).size(); s++) { - - if (p == 0 && s == 0) { //skip first node - segment_global++; - continue; - } - - vec3 central_axis = (internode_vertices_flat.at(segment_global) - internode_vertices_flat.at(segment_global - 1)); - float current_length = central_axis.magnitude(); - central_axis = central_axis / current_length; - vec3 dL = central_axis * current_length * (1.f - length_scale); - - std::cout << "(" << p << "," << s << ") " << internode_vertices_flat.at(segment_global) << " " << dL << std::endl; - - for (int i_downstream = segment_global; i_downstream < internode_vertices_flat.size(); i_downstream++) { - - internode_vertices_flat.at(i_downstream) += dL; - - } - - segment_global++; - } - } - - segment_global = 0; - for (int p = 0; p < Nphytomers; p++) { - for (int s = 0; s < current_shoot->shoot_internode_vertices.at(p).size(); s++) { - if (p == 0 && s == 0) { //skip first node - segment_global++; - continue; - } - current_shoot->shoot_internode_vertices.at(p).at(s) = internode_vertices_flat.at(segment_global); - segment_global++; - } - } - - current_shoot->updateShootNodes(update_context_geometry); - -} - void PlantArchitecture::setPhytomerLeafScale(uint plantID, uint shootID, uint node_number, float leaf_scale_factor_fraction) { if( plant_instances.find(plantID) == plant_instances.end() ){ @@ -2266,6 +2260,22 @@ helios::vec3 PlantArchitecture::getPlantBasePosition(uint plantID) const{ return plant_instances.at(plantID).base_position; } +float PlantArchitecture::sumPlantLeafArea(uint plantID) const{ + + if( plantID>=plant_instances.size() ){ + helios_runtime_error("ERROR (PlantArchitecture::sumPlantLeafArea): Plant with ID of " + std::to_string(plantID) + " does not exist."); + } + + std::vector leaf_objIDs = getPlantLeafObjectIDs(plantID); + + float area = 0; + for( uint objID : leaf_objIDs ){ + area += context_ptr->getObjectArea(objID); + } + + return area; +} + void PlantArchitecture::setPlantAge(uint plantID, float a_current_age) { //\todo // this->current_age = current_age; @@ -2644,18 +2654,19 @@ void PlantArchitecture::deletePlantInstance( const std::vector &plantIDs ) } -void PlantArchitecture::setPlantPhenologicalThresholds(uint plantID, float time_to_leaf_out, float time_to_flower_initiation, float time_to_flower_opening, float time_to_fruit_set, float time_to_fruit_maturity, float time_to_senescence) { +void PlantArchitecture::setPlantPhenologicalThresholds(uint plantID, float time_to_dormancy_break, float time_to_flower_initiation, float time_to_flower_opening, float time_to_fruit_set, float time_to_fruit_maturity, float time_to_senescence, bool is_evergreen) { if( plant_instances.find(plantID) == plant_instances.end() ){ helios_runtime_error("ERROR (PlantArchitecture::setPlantPhenologicalThresholds): Plant with ID of " + std::to_string(plantID) + " does not exist."); } - plant_instances.at(plantID).dd_to_dormancy_break = time_to_leaf_out; + plant_instances.at(plantID).dd_to_dormancy_break = time_to_dormancy_break; plant_instances.at(plantID).dd_to_flower_initiation = time_to_flower_initiation; plant_instances.at(plantID).dd_to_flower_opening = time_to_flower_opening; plant_instances.at(plantID).dd_to_fruit_set = time_to_fruit_set; plant_instances.at(plantID).dd_to_fruit_maturity = time_to_fruit_maturity; plant_instances.at(plantID).dd_to_senescence = time_to_senescence; + plant_instances.at(plantID).is_evergreen = is_evergreen; } @@ -2718,7 +2729,7 @@ void PlantArchitecture::advanceTime( uint plantID, float dt ) { plant_instance.current_age += dt_max; if( plant_instance.current_age > plant_instance.dd_to_senescence ){ - std::cout << "Going dormant" << std::endl; + std::cout << "Going dormant " << plant_instance.current_age << " " << plant_instance.dd_to_senescence << std::endl; for (const auto& shoot : *shoot_tree) { shoot->makeDormant(); shoot->carbohydrate_pool_molC = 100; @@ -2853,9 +2864,8 @@ void PlantArchitecture::advanceTime( uint plantID, float dt ) { //scale internode girth float inode_radius = phytomer->getInternodeRadius(); - if (inode_radius < phytomer->internode_radius_max) { - float dR = (1.f + dt_max * shoot->shoot_parameters.girth_growth_rate.val() / inode_radius); - incrementPhytomerInternodeGirth(plantID, shoot->ID, node_index, dR, false); + if (inode_radius < phytomer->internode_radius_max && shoot->shoot_parameters.girth_area_factor.val()>0.f ) { + incrementPhytomerInternodeGirth(plantID, shoot->ID, node_index, false); } node_index++; @@ -2870,6 +2880,7 @@ void PlantArchitecture::advanceTime( uint plantID, float dt ) { float leaf_length = phytomer->current_leaf_scale_factor * phytomer->leaf_size_max.front().at(tip_ind); float dL_leaf = dt_max * shoot->shoot_parameters.elongation_rate.val() * phytomer->leaf_size_max.front().at(tip_ind); float scale = fmin(1.f, (leaf_length + dL_leaf) / phytomer->phytomer_parameters.leaf.prototype_scale.val() ); + phytomer->phytomer_parameters.leaf.prototype_scale.resample(); phytomer->setLeafScaleFraction(scale); } @@ -2895,9 +2906,18 @@ void PlantArchitecture::advanceTime( uint plantID, float dt ) { ShootParameters *new_shoot_parameters = &shoot_types.at(vbud.shoot_type_label); int parent_node_count = shoot->current_node_number; - float insertion_angle_adjustment = fmin(new_shoot_parameters->insertion_angle_tip.val() + new_shoot_parameters->insertion_angle_decay_rate.val() * float(parent_node_count - phytomer->shoot_index.x - 1), 90.f); +// float insertion_angle_adjustment = fmin(new_shoot_parameters->insertion_angle_tip.val() + new_shoot_parameters->insertion_angle_decay_rate.val() * float(parent_node_count - phytomer->shoot_index.x - 1), 90.f); +// AxisRotation base_rotation = make_AxisRotation(deg2rad(insertion_angle_adjustment), deg2rad(new_shoot_parameters->base_yaw.val()), deg2rad(new_shoot_parameters->base_roll.val())); +// new_shoot_parameters->base_yaw.resample(); +// if( new_shoot_parameters->insertion_angle_decay_rate.val()==0 ){ +// new_shoot_parameters->insertion_angle_tip.resample(); +// } + float insertion_angle_adjustment = fmin(shoot->shoot_parameters.insertion_angle_tip.val() + shoot->shoot_parameters.insertion_angle_decay_rate.val() * float(parent_node_count - phytomer->shoot_index.x - 1), 90.f); AxisRotation base_rotation = make_AxisRotation(deg2rad(insertion_angle_adjustment), deg2rad(new_shoot_parameters->base_yaw.val()), deg2rad(new_shoot_parameters->base_roll.val())); new_shoot_parameters->base_yaw.resample(); + if( shoot->shoot_parameters.insertion_angle_decay_rate.val()==0 ){ + shoot->shoot_parameters.insertion_angle_tip.resample(); + } //scale the shoot internode length based on proximity from the tip float internode_length_max; diff --git a/plugins/plantarchitecture/src/PlantLibrary.cpp b/plugins/plantarchitecture/src/PlantLibrary.cpp index 0ed3d5742..66b2c7896 100644 --- a/plugins/plantarchitecture/src/PlantLibrary.cpp +++ b/plugins/plantarchitecture/src/PlantLibrary.cpp @@ -32,35 +32,43 @@ uint PlantArchitecture::buildPlantInstanceFromLibrary( const helios::vec3 &base_ uint plantID = 0; if( current_plant_model == "almond" ) { - plantID = buildAlmondTree(base_position, age); + plantID = buildAlmondTree(base_position); + }else if( current_plant_model == "apple" ) { + plantID = buildAppleTree(base_position); }else if( current_plant_model == "asparagus" ) { - plantID = buildAsparagusPlant(base_position, age); + plantID = buildAsparagusPlant(base_position); }else if( current_plant_model == "bindweed" ) { - plantID = buildBindweedPlant(base_position, age); + plantID = buildBindweedPlant(base_position); }else if( current_plant_model == "bean" ) { - plantID = buildBeanPlant(base_position, age); + plantID = buildBeanPlant(base_position); }else if( current_plant_model == "cheeseweed" ) { - plantID = buildCheeseweedPlant(base_position, age); + plantID = buildCheeseweedPlant(base_position); }else if( current_plant_model == "cowpea" ) { - plantID = buildCowpeaPlant(base_position, age); + plantID = buildCowpeaPlant(base_position); + }else if( current_plant_model == "grapevine_VSP" ) { + plantID = buildGrapevineVSP(base_position); + }else if( current_plant_model == "olive" ) { + plantID = buildOliveTree(base_position); + }else if( current_plant_model == "pistachio" ) { + plantID = buildPistachioTree(base_position); }else if( current_plant_model == "puncturevine" ) { - plantID = buildPuncturevinePlant(base_position, age); + plantID = buildPuncturevinePlant(base_position); }else if( current_plant_model == "easternredbud" ) { - plantID = buildEasternRedbudPlant(base_position, age); + plantID = buildEasternRedbudPlant(base_position); }else if( current_plant_model == "romainelettuce" ) { - plantID = buildRomaineLettucePlant(base_position, age); + plantID = buildRomaineLettucePlant(base_position); }else if( current_plant_model == "sorghum" ) { - plantID = buildSorghumPlant(base_position, age); + plantID = buildSorghumPlant(base_position); }else if( current_plant_model == "soybean" ) { - plantID = buildSoybeanPlant(base_position, age); + plantID = buildSoybeanPlant(base_position); }else if( current_plant_model == "strawberry" ) { - plantID = buildStrawberryPlant(base_position, age); + plantID = buildStrawberryPlant(base_position); }else if( current_plant_model == "sugarbeet" ) { - plantID = buildSugarbeetPlant(base_position, age); + plantID = buildSugarbeetPlant(base_position); }else if( current_plant_model == "tomato" ) { - plantID = buildTomatoPlant(base_position, age); + plantID = buildTomatoPlant(base_position); }else if( current_plant_model == "wheat" ) { - plantID = buildWheatPlant(base_position, age); + plantID = buildWheatPlant(base_position); }else{ assert(true); //shouldn't be here } @@ -101,6 +109,8 @@ void PlantArchitecture::initializeDefaultShoots( const std::string &plant_label if( plant_label == "almond" ) { initializeAlmondTreeShoots(); + }else if( plant_label == "apple" ) { + initializeAppleTreeShoots(); }else if( plant_label == "asparagus" ) { initializeAsparagusShoots(); }else if( plant_label == "bindweed" ) { @@ -111,6 +121,12 @@ void PlantArchitecture::initializeDefaultShoots( const std::string &plant_label initializeCheeseweedShoots(); }else if( plant_label == "cowpea" ) { initializeCowpeaShoots(); + }else if( plant_label == "grapevine_VSP" ) { + initializeGrapevineVSPShoots(); + }else if( plant_label == "olive" ) { + initializeOliveTreeShoots(); + }else if( plant_label == "pistachio" ) { + initializePistachioTreeShoots(); }else if( plant_label == "puncturevine" ) { initializePuncturevineShoots(); }else if( plant_label == "easternredbud" ) { @@ -159,7 +175,7 @@ void PlantArchitecture::initializeAlmondTreeShoots(){ phytomer_parameters_almond.leaf.leaves_per_petiole = 1; phytomer_parameters_almond.leaf.prototype_function = AlmondLeafPrototype; - phytomer_parameters_almond.leaf.prototype_scale = 0.09; + phytomer_parameters_almond.leaf.prototype_scale = 0.08; phytomer_parameters_almond.leaf.unique_prototypes = 1; phytomer_parameters_almond.peduncle.length = 0.005; @@ -168,7 +184,7 @@ void PlantArchitecture::initializeAlmondTreeShoots(){ phytomer_parameters_almond.peduncle.roll = 90; phytomer_parameters_almond.peduncle.length_segments = 1; - phytomer_parameters_almond.inflorescence.flowers_per_rachis = 1; + phytomer_parameters_almond.inflorescence.flowers_per_peduncle = 1; phytomer_parameters_almond.inflorescence.pitch = 0; phytomer_parameters_almond.inflorescence.roll = 0; phytomer_parameters_almond.inflorescence.flower_prototype_scale = 0.03; @@ -182,9 +198,9 @@ void PlantArchitecture::initializeAlmondTreeShoots(){ ShootParameters shoot_parameters_trunk(context_ptr->getRandomGenerator()); shoot_parameters_trunk.phytomer_parameters = phytomer_parameters_almond; shoot_parameters_trunk.phytomer_parameters.internode.phyllotactic_angle = 0; - shoot_parameters_trunk.phytomer_parameters.internode.radial_subdivisions = 14; + shoot_parameters_trunk.phytomer_parameters.internode.radial_subdivisions = 24; shoot_parameters_trunk.max_nodes = 20; - shoot_parameters_trunk.girth_growth_rate = 0.00075; + shoot_parameters_trunk.girth_area_factor = 35.f; shoot_parameters_trunk.internode_radius_initial = 0.01; shoot_parameters_trunk.vegetative_bud_break_probability = 0; shoot_parameters_trunk.vegetative_bud_break_time = 0; @@ -202,7 +218,7 @@ void PlantArchitecture::initializeAlmondTreeShoots(){ shoot_parameters_proleptic.max_nodes = 40; shoot_parameters_proleptic.phyllochron = 0.9; shoot_parameters_proleptic.elongation_rate = 0.25; - shoot_parameters_proleptic.girth_growth_rate = 0.00045; + shoot_parameters_proleptic.girth_area_factor = 35.f; shoot_parameters_proleptic.vegetative_bud_break_probability = 0.15; shoot_parameters_proleptic.vegetative_bud_break_time = 0; shoot_parameters_proleptic.leaf_flush_count = 1; @@ -246,7 +262,6 @@ void PlantArchitecture::initializeAlmondTreeShoots(){ shoot_parameters_scaffold.gravitropic_curvature = 300; shoot_parameters_scaffold.internode_length_max = 0.04; shoot_parameters_scaffold.tortuosity = 7; - shoot_parameters_scaffold.girth_growth_rate = 0.0005; shoot_parameters_scaffold.defineChildShootTypes({"proleptic"},{1.0}); defineShootType("trunk", shoot_parameters_trunk); @@ -256,14 +271,14 @@ void PlantArchitecture::initializeAlmondTreeShoots(){ } -uint PlantArchitecture::buildAlmondTree(const helios::vec3 &base_position, float age) { +uint PlantArchitecture::buildAlmondTree(const helios::vec3 &base_position) { if( shoot_types.empty() ){ //automatically initialize almond tree shoots initializeAlmondTreeShoots(); } - uint plantID = addPlantInstance(base_position, age); + uint plantID = addPlantInstance(base_position, 0); // enableEpicormicChildShoots(plantID,"sylleptic",0.001); @@ -301,7 +316,164 @@ uint PlantArchitecture::buildAlmondTree(const helios::vec3 &base_position, float makePlantDormant(plantID); - setPlantPhenologicalThresholds(plantID, 0, -1, 1, 3, 8, 20); + setPlantPhenologicalThresholds(plantID, 0, -1, 1, 3, 8, 20, false); + + return plantID; + +} + +void PlantArchitecture::initializeAppleTreeShoots(){ + + // ---- Phytomer Parameters ---- // + + PhytomerParameters phytomer_parameters_apple(context_ptr->getRandomGenerator()); + + phytomer_parameters_apple.internode.pitch = 0; + phytomer_parameters_apple.internode.phyllotactic_angle.uniformDistribution( 130, 145 ); + phytomer_parameters_apple.internode.length_segments = 1; + phytomer_parameters_apple.internode.image_texture = "plugins/plantarchitecture/assets/textures/WesternRedbudBark.jpg"; + phytomer_parameters_apple.internode.max_floral_buds_per_petiole = 1; + + phytomer_parameters_apple.petiole.petioles_per_internode = 1; + phytomer_parameters_apple.petiole.pitch.uniformDistribution(-25,-40); + phytomer_parameters_apple.petiole.taper = 0.1; + phytomer_parameters_apple.petiole.curvature = 0; + phytomer_parameters_apple.petiole.length = 0.04; + phytomer_parameters_apple.petiole.radius = 0.00075; + phytomer_parameters_apple.petiole.length_segments = 1; + phytomer_parameters_apple.petiole.radial_subdivisions = 3; + phytomer_parameters_apple.petiole.color = make_RGBcolor(0.61,0.5,0.24); + + phytomer_parameters_apple.leaf.leaves_per_petiole = 1; + phytomer_parameters_apple.leaf.prototype_function = AppleLeafPrototype; + phytomer_parameters_apple.leaf.prototype_scale = 0.12; + phytomer_parameters_apple.leaf.unique_prototypes = 1; + + phytomer_parameters_apple.peduncle.length = 0.04; + phytomer_parameters_apple.peduncle.radius = 0.001; + phytomer_parameters_apple.peduncle.pitch = 90; + phytomer_parameters_apple.peduncle.roll = 90; + phytomer_parameters_apple.peduncle.length_segments = 1; + + phytomer_parameters_apple.inflorescence.flowers_per_peduncle = 1; + phytomer_parameters_apple.inflorescence.pitch = 0; + phytomer_parameters_apple.inflorescence.roll = 0; + phytomer_parameters_apple.inflorescence.flower_prototype_scale = 0.03; + phytomer_parameters_apple.inflorescence.flower_prototype_function = AppleFlowerPrototype; + phytomer_parameters_apple.inflorescence.fruit_prototype_scale = 0.1; + phytomer_parameters_apple.inflorescence.fruit_prototype_function = AppleFruitPrototype; + phytomer_parameters_apple.inflorescence.fruit_gravity_factor_fraction = 0.5; + + // ---- Shoot Parameters ---- // + + // Trunk + ShootParameters shoot_parameters_trunk(context_ptr->getRandomGenerator()); + shoot_parameters_trunk.phytomer_parameters = phytomer_parameters_apple; + shoot_parameters_trunk.phytomer_parameters.internode.phyllotactic_angle = 0; + shoot_parameters_trunk.phytomer_parameters.internode.radial_subdivisions = 24; + shoot_parameters_trunk.max_nodes = 20; + shoot_parameters_trunk.girth_area_factor = 16.f; + shoot_parameters_trunk.internode_radius_initial = 0.01; + shoot_parameters_trunk.vegetative_bud_break_probability = 0; + shoot_parameters_trunk.vegetative_bud_break_time = 0; + shoot_parameters_trunk.tortuosity = 6; + shoot_parameters_trunk.internode_length_max = 0.05; + shoot_parameters_trunk.internode_length_decay_rate = 0; + shoot_parameters_trunk.defineChildShootTypes({"scaffold"},{1}); + + // Proleptic shoots + ShootParameters shoot_parameters_proleptic(context_ptr->getRandomGenerator()); + shoot_parameters_proleptic.phytomer_parameters = phytomer_parameters_apple; + shoot_parameters_proleptic.phytomer_parameters.internode.color = make_RGBcolor(0.3,0.2,0.2); + shoot_parameters_proleptic.phytomer_parameters.phytomer_creation_function = AlmondPhytomerCreationFunction; + shoot_parameters_proleptic.phytomer_parameters.phytomer_callback_function = AlmondPhytomerCallbackFunction; + shoot_parameters_proleptic.max_nodes = 40; + shoot_parameters_proleptic.phyllochron = 0.9; + shoot_parameters_proleptic.elongation_rate = 0.25; + shoot_parameters_proleptic.girth_area_factor = 20.f; + shoot_parameters_proleptic.vegetative_bud_break_probability = 0.15; + shoot_parameters_proleptic.vegetative_bud_break_time = 0; + shoot_parameters_proleptic.leaf_flush_count = 1; + shoot_parameters_proleptic.gravitropic_curvature = 500; + shoot_parameters_proleptic.tortuosity = 20; + shoot_parameters_proleptic.internode_radius_initial = 0.006; + shoot_parameters_proleptic.insertion_angle_tip.uniformDistribution( 20, 25); + shoot_parameters_proleptic.insertion_angle_decay_rate = 20; + shoot_parameters_proleptic.internode_length_max = 0.035; + shoot_parameters_proleptic.internode_length_min = 0.01; + shoot_parameters_proleptic.internode_length_decay_rate = 0.004; + shoot_parameters_proleptic.fruit_set_probability = 0.4; + shoot_parameters_proleptic.flower_bud_break_probability = 0.3; + shoot_parameters_proleptic.max_terminal_floral_buds = 4; + shoot_parameters_proleptic.flowers_require_dormancy = true; + shoot_parameters_proleptic.growth_requires_dormancy = true; + shoot_parameters_proleptic.determinate_shoot_growth = false; + shoot_parameters_proleptic.defineChildShootTypes({"proleptic","sylleptic"},{1.0,0.}); + + // Sylleptic shoots + ShootParameters shoot_parameters_sylleptic = shoot_parameters_proleptic; + shoot_parameters_sylleptic.phytomer_parameters.internode.image_texture = ""; + shoot_parameters_sylleptic.phytomer_parameters.leaf.prototype_scale = 0.12; + shoot_parameters_sylleptic.phytomer_parameters.leaf.pitch.uniformDistribution(-45, -20); + shoot_parameters_sylleptic.insertion_angle_tip = 0; + shoot_parameters_sylleptic.insertion_angle_decay_rate = 0; + shoot_parameters_sylleptic.vegetative_bud_break_probability = 0.1; + shoot_parameters_sylleptic.gravitropic_curvature= 600; + shoot_parameters_sylleptic.internode_length_max = 0.06; + shoot_parameters_sylleptic.flowers_require_dormancy = true; + shoot_parameters_sylleptic.growth_requires_dormancy = true; + shoot_parameters_sylleptic.defineChildShootTypes({"proleptic"},{1.0}); + + // Main scaffolds + ShootParameters shoot_parameters_scaffold = shoot_parameters_proleptic; + shoot_parameters_scaffold.phytomer_parameters.internode.radial_subdivisions = 10; + shoot_parameters_scaffold.max_nodes = 40; + shoot_parameters_scaffold.gravitropic_curvature = 400; + shoot_parameters_scaffold.internode_length_max = 0.04; + shoot_parameters_scaffold.tortuosity = 10; + shoot_parameters_scaffold.defineChildShootTypes({"proleptic"},{1.0}); + + defineShootType("trunk", shoot_parameters_trunk); + defineShootType("scaffold", shoot_parameters_scaffold); + defineShootType("proleptic", shoot_parameters_proleptic); + defineShootType("sylleptic", shoot_parameters_sylleptic); + +} + +uint PlantArchitecture::buildAppleTree(const helios::vec3 &base_position) { + + if( shoot_types.empty() ){ + //automatically initialize almond tree shoots + initializeAlmondTreeShoots(); + } + + uint plantID = addPlantInstance(base_position, 0); + +// enableEpicormicChildShoots(plantID,"sylleptic",0.001); + + uint uID_trunk = addBaseStemShoot(plantID, 19, make_AxisRotation(context_ptr->randu(0.f, 0.05f * M_PI), context_ptr->randu(0.f, 2.f * M_PI), 0.f * M_PI), 0.015, 0.04, 1.f, 1.f, 0, "trunk"); + appendPhytomerToShoot( plantID, uID_trunk, shoot_types.at("trunk").phytomer_parameters, 0, 0.01, 1, 1); + + plant_instances.at(plantID).shoot_tree.at(uID_trunk)->meristem_is_alive = false; + + auto phytomers = plant_instances.at(plantID).shoot_tree.at(uID_trunk)->phytomers; + for( const auto & phytomer : phytomers ){ + phytomer->removeLeaf(); + phytomer->setVegetativeBudState(BUD_DEAD); + phytomer->setFloralBudState(BUD_DEAD); + } + + uint Nscaffolds = 4;//context_ptr->randu(4,5); + + for( int i=0; irandu(deg2rad(45), deg2rad(55)); + uint uID_shoot = addChildShoot( plantID, uID_trunk, getShootNodeCount(plantID,uID_trunk)-i-1, context_ptr->randu(7, 9), make_AxisRotation(pitch, (float(i) + context_ptr->randu(-0.2f, 0.2f)) / float(Nscaffolds) * 2 * M_PI, 0), 0.007, 0.06, 1.f, 1.f, 0.5, "scaffold", 0); + + } + + makePlantDormant(plantID); + + setPlantPhenologicalThresholds(plantID, 0, -1, 1, 3, 8, 20, false); return plantID; @@ -348,9 +520,8 @@ void PlantArchitecture::initializeAsparagusShoots() { phytomer_parameters.peduncle.length_segments = 6; phytomer_parameters.peduncle.radial_subdivisions = 6; - phytomer_parameters.inflorescence.flowers_per_rachis.uniformDistribution(1, 3); + phytomer_parameters.inflorescence.flowers_per_peduncle.uniformDistribution(1, 3); phytomer_parameters.inflorescence.flower_offset = 0.; - phytomer_parameters.inflorescence.flower_arrangement_pattern = "opposite"; phytomer_parameters.inflorescence.pitch.uniformDistribution(50, 70); phytomer_parameters.inflorescence.roll.uniformDistribution(-20, 20); phytomer_parameters.inflorescence.flower_prototype_scale = 0.015; @@ -378,7 +549,8 @@ void PlantArchitecture::initializeAsparagusShoots() { shoot_parameters.phyllochron = 1; // shoot_parameters.leaf_flush_count = 1; (default) shoot_parameters.elongation_rate = 0.15; - shoot_parameters.girth_growth_rate = 0.00005; +// shoot_parameters.girth_growth_rate = 0.00005; + shoot_parameters.girth_area_factor = 30; shoot_parameters.vegetative_bud_break_time = 5; shoot_parameters.vegetative_bud_break_probability = 0.25; // shoot_parameters.max_terminal_floral_buds = 0; (default) @@ -394,20 +566,20 @@ void PlantArchitecture::initializeAsparagusShoots() { } -uint PlantArchitecture::buildAsparagusPlant(const helios::vec3 &base_position, float age) { +uint PlantArchitecture::buildAsparagusPlant(const helios::vec3 &base_position) { if (shoot_types.empty()) { //automatically initialize asparagus plant shoots initializeAsparagusShoots(); } - uint plantID = addPlantInstance(base_position, age); + uint plantID = addPlantInstance(base_position, 0); uint uID_stem = addBaseStemShoot(plantID, 1, make_AxisRotation(0, 0.f, 0.f), 0.0003, 0.015, 1, 0.1, 0.1, "main"); breakPlantDormancy(plantID); - setPlantPhenologicalThresholds(plantID, 0, -1, -1, -1, 5, 100); + setPlantPhenologicalThresholds(plantID, 0, -1, -1, -1, 5, 100, false); return plantID; @@ -441,7 +613,7 @@ void PlantArchitecture::initializeBindweedShoots() { phytomer_parameters_bindweed.leaf.prototype_scale = 0.04; phytomer_parameters_bindweed.peduncle.length = 0.001; - phytomer_parameters_bindweed.inflorescence.flowers_per_rachis = 1; + phytomer_parameters_bindweed.inflorescence.flowers_per_peduncle = 1; phytomer_parameters_bindweed.inflorescence.pitch = -90.f; phytomer_parameters_bindweed.inflorescence.flower_prototype_function = BindweedFlowerPrototype; phytomer_parameters_bindweed.inflorescence.flower_prototype_scale = 0.03; @@ -456,7 +628,7 @@ void PlantArchitecture::initializeBindweedShoots() { shoot_parameters_primary.internode_radius_initial = 0.001; shoot_parameters_primary.phyllochron = 1; shoot_parameters_primary.elongation_rate = 0.25; - shoot_parameters_primary.girth_growth_rate = 0.; + shoot_parameters_primary.girth_area_factor = 0; shoot_parameters_primary.internode_length_max = 0.03; shoot_parameters_primary.internode_length_decay_rate = 0; shoot_parameters_primary.insertion_angle_tip.uniformDistribution(50, 80); @@ -480,7 +652,7 @@ void PlantArchitecture::initializeBindweedShoots() { shoot_parameters_base.internode_radius_initial = 0.01; shoot_parameters_base.phyllochron = 1; shoot_parameters_base.elongation_rate = 0.25; - shoot_parameters_base.girth_growth_rate = 0.; + shoot_parameters_base.girth_area_factor = 0.f; shoot_parameters_base.gravitropic_curvature = 0; shoot_parameters_base.internode_length_max = 0.01; shoot_parameters_base.internode_length_decay_rate = 0; @@ -502,20 +674,20 @@ void PlantArchitecture::initializeBindweedShoots() { } -uint PlantArchitecture::buildBindweedPlant(const helios::vec3 &base_position, float age) { +uint PlantArchitecture::buildBindweedPlant(const helios::vec3 &base_position) { if (shoot_types.empty()) { //automatically initialize bindweed plant shoots initializeBindweedShoots(); } - uint plantID = addPlantInstance(base_position, age); + uint plantID = addPlantInstance(base_position, 0); uint uID_stem = addBaseStemShoot(plantID, 3, make_AxisRotation(0, 0.f, 0.f), 0.001, 0.001, 1, 1, 0, "base_bindweed"); breakPlantDormancy(plantID); - setPlantPhenologicalThresholds(plantID, 0, -1, 7, 1000, 5, 100); + setPlantPhenologicalThresholds(plantID, 0, -1, 7, 1000, 5, 100, false); return plantID; @@ -534,7 +706,7 @@ void PlantArchitecture::initializeBeanShoots() { phytomer_parameters_trifoliate.petiole.petioles_per_internode = 1; phytomer_parameters_trifoliate.petiole.pitch.uniformDistribution(30,70); - phytomer_parameters_trifoliate.petiole.radius = 0.003; + phytomer_parameters_trifoliate.petiole.radius = 0.0025; phytomer_parameters_trifoliate.petiole.length.uniformDistribution(0.12,0.16); phytomer_parameters_trifoliate.petiole.taper = 0.25; phytomer_parameters_trifoliate.petiole.curvature.uniformDistribution(-100,200); @@ -543,27 +715,26 @@ void PlantArchitecture::initializeBeanShoots() { phytomer_parameters_trifoliate.petiole.radial_subdivisions = 6; phytomer_parameters_trifoliate.leaf.leaves_per_petiole = 3; - phytomer_parameters_trifoliate.leaf.pitch.normalDistribution(0, 10); + phytomer_parameters_trifoliate.leaf.pitch.normalDistribution(0, 20); phytomer_parameters_trifoliate.leaf.yaw = 10; phytomer_parameters_trifoliate.leaf.roll = -15; phytomer_parameters_trifoliate.leaf.leaflet_offset = 0.2; phytomer_parameters_trifoliate.leaf.leaflet_scale = 0.9; phytomer_parameters_trifoliate.leaf.prototype_function = BeanLeafPrototype_trifoliate; - phytomer_parameters_trifoliate.leaf.prototype_scale.uniformDistribution(0.11,0.13); - phytomer_parameters_trifoliate.leaf.subdivisions = 10; + phytomer_parameters_trifoliate.leaf.prototype_scale.uniformDistribution(0.09,0.11); + phytomer_parameters_trifoliate.leaf.subdivisions = 12; phytomer_parameters_trifoliate.leaf.unique_prototypes = 5; phytomer_parameters_trifoliate.peduncle.length = 0.04; - phytomer_parameters_trifoliate.peduncle.radius = 0.001; + phytomer_parameters_trifoliate.peduncle.radius = 0.00075; phytomer_parameters_trifoliate.peduncle.pitch.uniformDistribution(0, 40); phytomer_parameters_trifoliate.peduncle.roll = 90; phytomer_parameters_trifoliate.peduncle.curvature.uniformDistribution(-500, 500); phytomer_parameters_trifoliate.peduncle.length_segments = 1; phytomer_parameters_trifoliate.peduncle.radial_subdivisions = 6; - phytomer_parameters_trifoliate.inflorescence.flowers_per_rachis.uniformDistribution(1, 4); + phytomer_parameters_trifoliate.inflorescence.flowers_per_peduncle.uniformDistribution(1, 4); phytomer_parameters_trifoliate.inflorescence.flower_offset = 0.2; - phytomer_parameters_trifoliate.inflorescence.flower_arrangement_pattern = "opposite"; phytomer_parameters_trifoliate.inflorescence.pitch.uniformDistribution(50,70); phytomer_parameters_trifoliate.inflorescence.roll.uniformDistribution(-20,20); phytomer_parameters_trifoliate.inflorescence.flower_prototype_scale = 0.015; @@ -579,7 +750,7 @@ void PlantArchitecture::initializeBeanShoots() { phytomer_parameters_unifoliate.petiole.petioles_per_internode = 2; phytomer_parameters_unifoliate.petiole.length = 0.001; phytomer_parameters_unifoliate.petiole.radius = 0.0004; - phytomer_parameters_unifoliate.petiole.pitch.uniformDistribution(60,80); + phytomer_parameters_unifoliate.petiole.pitch.uniformDistribution(50,70); phytomer_parameters_unifoliate.leaf.leaves_per_petiole = 1; phytomer_parameters_unifoliate.leaf.prototype_scale = 0.02; phytomer_parameters_unifoliate.leaf.pitch.uniformDistribution(-10, 10); @@ -606,9 +777,9 @@ void PlantArchitecture::initializeBeanShoots() { shoot_parameters_trifoliate.phyllochron = 1; // shoot_parameters_trifoliate.leaf_flush_count = 1; (default) shoot_parameters_trifoliate.elongation_rate = 0.1; - shoot_parameters_trifoliate.girth_growth_rate = 0.0003; + shoot_parameters_trifoliate.girth_area_factor = 25.f; shoot_parameters_trifoliate.vegetative_bud_break_time = 3; - shoot_parameters_trifoliate.vegetative_bud_break_probability = 0.25; + shoot_parameters_trifoliate.vegetative_bud_break_probability = 0.2; // shoot_parameters_trifoliate.max_terminal_floral_buds = 0; (default) shoot_parameters_trifoliate.flower_bud_break_probability.uniformDistribution(0.8,1.0); shoot_parameters_trifoliate.fruit_set_probability = 0.4; @@ -621,6 +792,7 @@ void PlantArchitecture::initializeBeanShoots() { ShootParameters shoot_parameters_unifoliate = shoot_parameters_trifoliate; shoot_parameters_unifoliate.phytomer_parameters = phytomer_parameters_unifoliate; + shoot_parameters_unifoliate.phytomer_parameters.phytomer_creation_function = nullptr; shoot_parameters_unifoliate.max_nodes = 1; shoot_parameters_unifoliate.vegetative_bud_break_probability = 0; shoot_parameters_unifoliate.flower_bud_break_probability = 0; @@ -635,14 +807,14 @@ void PlantArchitecture::initializeBeanShoots() { } -uint PlantArchitecture::buildBeanPlant(const helios::vec3 &base_position, float age) { +uint PlantArchitecture::buildBeanPlant(const helios::vec3 &base_position) { if (shoot_types.empty()) { //automatically initialize bean plant shoots initializeBeanShoots(); } - uint plantID = addPlantInstance(base_position, age); + uint plantID = addPlantInstance(base_position, 0); AxisRotation base_rotation = make_AxisRotation(context_ptr->randu(0.f, 0.05f * M_PI), context_ptr->randu(0.f, 2.f * M_PI), context_ptr->randu(0.f, 2.f * M_PI)); uint uID_unifoliate = addBaseStemShoot(plantID, 1, base_rotation, 0.0005, 0.01, 0.01, 0.01, 0, "unifoliate"); @@ -651,7 +823,7 @@ uint PlantArchitecture::buildBeanPlant(const helios::vec3 &base_position, float breakPlantDormancy(plantID); - setPlantPhenologicalThresholds(plantID, 0, 15, 3, 3, 5, 100); + setPlantPhenologicalThresholds(plantID, 0, 15, 3, 3, 5, 100, false); return plantID; @@ -694,7 +866,7 @@ void PlantArchitecture::initializeCheeseweedShoots() { shoot_parameters_base.internode_radius_max = 0.001; shoot_parameters_base.phyllochron = 1; shoot_parameters_base.elongation_rate = 0.2; - shoot_parameters_base.girth_growth_rate = 0.0002; + shoot_parameters_base.girth_area_factor = 20.f; shoot_parameters_base.gravitropic_curvature = 0; shoot_parameters_base.internode_length_max = 0.0015; shoot_parameters_base.internode_length_decay_rate = 0; @@ -707,20 +879,20 @@ void PlantArchitecture::initializeCheeseweedShoots() { } -uint PlantArchitecture::buildCheeseweedPlant(const helios::vec3 &base_position, float age) { +uint PlantArchitecture::buildCheeseweedPlant(const helios::vec3 &base_position) { if (shoot_types.empty()) { //automatically initialize cheeseweed plant shoots initializeCheeseweedShoots(); } - uint plantID = addPlantInstance(base_position, age); + uint plantID = addPlantInstance(base_position, 0); uint uID_stem = addBaseStemShoot(plantID, 1, make_AxisRotation(0, 0.f, 0.f), 0.0001, 0.0025, 0.1, 0.1, 0, "base"); breakPlantDormancy(plantID); - setPlantPhenologicalThresholds(plantID, 0, 1000, 3, 1000, 5, 100); + setPlantPhenologicalThresholds(plantID, 0, 1000, 3, 1000, 5, 100, false); return plantID; @@ -769,14 +941,13 @@ void PlantArchitecture::initializeCowpeaShoots() { phytomer_parameters_trifoliate.peduncle.length_segments = 6; phytomer_parameters_trifoliate.peduncle.radial_subdivisions = 6; - phytomer_parameters_trifoliate.inflorescence.flowers_per_rachis = 3;//.uniformDistribution(1, 3); + phytomer_parameters_trifoliate.inflorescence.flowers_per_peduncle = 3;//.uniformDistribution(1, 3); phytomer_parameters_trifoliate.inflorescence.flower_offset = 0.; - phytomer_parameters_trifoliate.inflorescence.flower_arrangement_pattern = "opposite"; phytomer_parameters_trifoliate.inflorescence.pitch.uniformDistribution(50,70); phytomer_parameters_trifoliate.inflorescence.roll.uniformDistribution(-20,20); phytomer_parameters_trifoliate.inflorescence.flower_prototype_scale = 0.015; phytomer_parameters_trifoliate.inflorescence.flower_prototype_function = CowpeaFlowerPrototype; - phytomer_parameters_trifoliate.inflorescence.fruit_prototype_scale.uniformDistribution(0.02,0.025); + phytomer_parameters_trifoliate.inflorescence.fruit_prototype_scale.uniformDistribution(0.025,0.03); phytomer_parameters_trifoliate.inflorescence.fruit_prototype_function = CowpeaFruitPrototype; phytomer_parameters_trifoliate.inflorescence.fruit_gravity_factor_fraction.uniformDistribution(0.,0.5); @@ -814,11 +985,11 @@ void PlantArchitecture::initializeCowpeaShoots() { shoot_parameters_trifoliate.phyllochron = 1; // shoot_parameters_trifoliate.leaf_flush_count = 1; (default) shoot_parameters_trifoliate.elongation_rate = 0.1; - shoot_parameters_trifoliate.girth_growth_rate = 0.0003; + shoot_parameters_trifoliate.girth_area_factor = 20.f; shoot_parameters_trifoliate.vegetative_bud_break_time = 3; shoot_parameters_trifoliate.vegetative_bud_break_probability = 0.5; // shoot_parameters_trifoliate.max_terminal_floral_buds = 0; (default) - shoot_parameters_trifoliate.flower_bud_break_probability.uniformDistribution(0.1,0.2); + shoot_parameters_trifoliate.flower_bud_break_probability.uniformDistribution(0.2,0.3); shoot_parameters_trifoliate.fruit_set_probability = 0.5; // shoot_parameters_trifoliate.flowers_require_dormancy = false; (default) // shoot_parameters_trifoliate.growth_requires_dormancy = false; (default) @@ -842,14 +1013,14 @@ void PlantArchitecture::initializeCowpeaShoots() { } -uint PlantArchitecture::buildCowpeaPlant(const helios::vec3 &base_position, float age) { +uint PlantArchitecture::buildCowpeaPlant(const helios::vec3 &base_position) { if (shoot_types.empty()) { //automatically initialize cowpea plant shoots initializeCowpeaShoots(); } - uint plantID = addPlantInstance(base_position, age); + uint plantID = addPlantInstance(base_position, 0); AxisRotation base_rotation = make_AxisRotation(context_ptr->randu(0.f, 0.05f * M_PI), context_ptr->randu(0.f, 2.f * M_PI), context_ptr->randu(0.f, 2.f * M_PI)); uint uID_unifoliate = addBaseStemShoot(plantID, 1, base_rotation, 0.0005, 0.02, 0.01, 0.01, 0, "unifoliate"); @@ -858,7 +1029,417 @@ uint PlantArchitecture::buildCowpeaPlant(const helios::vec3 &base_position, floa breakPlantDormancy(plantID); - setPlantPhenologicalThresholds(plantID, 0, 16, 3, 3, 5, 100); + setPlantPhenologicalThresholds(plantID, 0, 18, 3, 3, 5, 100, false); + + return plantID; + +} + +void PlantArchitecture::initializeGrapevineVSPShoots() { + + // ---- Phytomer Parameters ---- // + + PhytomerParameters phytomer_parameters_grapevine(context_ptr->getRandomGenerator()); + + phytomer_parameters_grapevine.internode.pitch = 20; + phytomer_parameters_grapevine.internode.phyllotactic_angle.uniformDistribution(170, 190); + phytomer_parameters_grapevine.internode.color = make_RGBcolor(0.65, 0.52, 0.39); + phytomer_parameters_grapevine.internode.length_segments = 3;//1; + phytomer_parameters_grapevine.internode.max_floral_buds_per_petiole = 1; + phytomer_parameters_grapevine.internode.max_vegetative_buds_per_petiole = 1; + + phytomer_parameters_grapevine.petiole.petioles_per_internode = 1; + phytomer_parameters_grapevine.petiole.color = make_RGBcolor(0.65, 0.52, 0.39); + phytomer_parameters_grapevine.petiole.pitch.uniformDistribution(45, 70); + phytomer_parameters_grapevine.petiole.radius = 0.0025; + phytomer_parameters_grapevine.petiole.length = 0.1; + phytomer_parameters_grapevine.petiole.taper = 0; + phytomer_parameters_grapevine.petiole.curvature = 0; + phytomer_parameters_grapevine.petiole.length_segments = 1; + + phytomer_parameters_grapevine.leaf.leaves_per_petiole = 1; + phytomer_parameters_grapevine.leaf.pitch.uniformDistribution(-110, -80); + phytomer_parameters_grapevine.leaf.yaw.uniformDistribution(-20, 20); + phytomer_parameters_grapevine.leaf.roll.uniformDistribution(-5, 5); + phytomer_parameters_grapevine.leaf.prototype_function = GrapevineLeafPrototype; + phytomer_parameters_grapevine.leaf.prototype_scale = 0.2; + phytomer_parameters_grapevine.leaf.subdivisions = 5; + phytomer_parameters_grapevine.leaf.unique_prototypes = 10; + + phytomer_parameters_grapevine.peduncle.length = 0.08; + phytomer_parameters_grapevine.peduncle.pitch.uniformDistribution(50, 90); + phytomer_parameters_grapevine.peduncle.color = make_RGBcolor(0.32, 0.05, 0.13); + + phytomer_parameters_grapevine.inflorescence.flowers_per_peduncle = 1; + phytomer_parameters_grapevine.inflorescence.pitch = 0; +// phytomer_parameters_grapevine.inflorescence.flower_prototype_function = GrapevineFlowerPrototype; + phytomer_parameters_grapevine.inflorescence.flower_prototype_scale = 0.04; +// phytomer_parameters_grapevine.inflorescence.fruit_prototype_function = GrapevineFruitPrototype; + phytomer_parameters_grapevine.inflorescence.fruit_prototype_scale = 0.04; + phytomer_parameters_grapevine.inflorescence.fruit_gravity_factor_fraction = 0.9; + + phytomer_parameters_grapevine.phytomer_creation_function = GrapevinePhytomerCreationFunction; +// phytomer_parameters_grapevine.phytomer_callback_function = GrapevinePhytomerCallbackFunction; + + // ---- Shoot Parameters ---- // + + ShootParameters shoot_parameters_main(context_ptr->getRandomGenerator()); + shoot_parameters_main.phytomer_parameters = phytomer_parameters_grapevine; + shoot_parameters_main.vegetative_bud_break_probability = 0.1; + shoot_parameters_main.vegetative_bud_break_time = 1; + shoot_parameters_main.phyllochron = 0.5; + shoot_parameters_main.elongation_rate = 0.15; + shoot_parameters_main.girth_area_factor = 4.f; + shoot_parameters_main.gravitropic_curvature = 300; + shoot_parameters_main.tortuosity = 20; + shoot_parameters_main.internode_length_max.uniformDistribution(0.075,0.1); + shoot_parameters_main.internode_length_decay_rate = 0; + shoot_parameters_main.insertion_angle_tip = 45; + shoot_parameters_main.insertion_angle_decay_rate = 0; + shoot_parameters_main.internode_radius_initial = 0.003; + shoot_parameters_main.internode_radius_max = 0.02; + shoot_parameters_main.flowers_require_dormancy = false; + shoot_parameters_main.growth_requires_dormancy = false; + shoot_parameters_main.determinate_shoot_growth = false; + shoot_parameters_main.max_terminal_floral_buds = 0; + shoot_parameters_main.flower_bud_break_probability = 0.5; + shoot_parameters_main.fruit_set_probability = 0.2; + shoot_parameters_main.max_nodes = 30; + shoot_parameters_main.base_roll = 90; + shoot_parameters_main.base_yaw = 0; + + ShootParameters shoot_parameters_cane = shoot_parameters_main; +// shoot_parameters_cane.phytomer_parameters.internode.image_texture = "plugins/plantarchitecture/assets/textures/GrapeBark.jpg"; + shoot_parameters_cane.phytomer_parameters.internode.pitch = 0; + shoot_parameters_cane.phytomer_parameters.internode.radial_subdivisions = 15; + shoot_parameters_cane.phytomer_parameters.internode.max_floral_buds_per_petiole = 0; + shoot_parameters_cane.phytomer_parameters.internode.phyllotactic_angle = 0; + shoot_parameters_cane.internode_radius_max = 0.1; + shoot_parameters_cane.insertion_angle_tip.uniformDistribution(60, 120); + shoot_parameters_cane.max_nodes = 9; + shoot_parameters_cane.tortuosity = 1.5; + shoot_parameters_cane.gravitropic_curvature = 10; + shoot_parameters_cane.vegetative_bud_break_probability = 1.0; + shoot_parameters_cane.defineChildShootTypes({"grapevine_shoot"},{1.f}); + + ShootParameters shoot_parameters_trunk = shoot_parameters_main; + shoot_parameters_trunk.phytomer_parameters.internode.image_texture = "plugins/plantarchitecture/assets/textures/GrapeBark.jpg"; + shoot_parameters_trunk.phytomer_parameters.internode.pitch = 0; + shoot_parameters_trunk.phytomer_parameters.internode.phyllotactic_angle = 0; + shoot_parameters_trunk.phytomer_parameters.internode.radial_subdivisions = 25; + shoot_parameters_trunk.phytomer_parameters.internode.max_floral_buds_per_petiole = 0; + shoot_parameters_trunk.internode_radius_max = 1; + shoot_parameters_trunk.phyllochron = 1.25; + shoot_parameters_trunk.insertion_angle_tip = 90; + shoot_parameters_trunk.max_nodes = 18; + shoot_parameters_trunk.tortuosity = 1; + shoot_parameters_trunk.vegetative_bud_break_probability = 0; + shoot_parameters_trunk.defineChildShootTypes({"grapevine_shoot"},{1.f}); + + defineShootType("grapevine_trunk", shoot_parameters_trunk); + defineShootType("grapevine_cane", shoot_parameters_cane); + defineShootType("grapevine_shoot", shoot_parameters_main); + +} + +uint PlantArchitecture::buildGrapevineVSP(const helios::vec3 &base_position) { + + if (shoot_types.empty()) { + //automatically initialize redbud plant shoots + initializeGrapevineVSPShoots(); + } + + uint plantID = addPlantInstance(base_position, 0); + + uint uID_stem = addBaseStemShoot(plantID, 17, make_AxisRotation(context_ptr->randu(0,0.05*M_PI), 0, 0), 0.04, 0.05, 1, 1, 0.1, "grapevine_trunk"); + //appendPhytomerToShoot( plantID, uID_stem, getCurrentShootParameters("grapevine_trunk").phytomer_parameters, 1e-3, 0.1, 1, 1 ); + + uint uID_cane_L = appendShoot( plantID, uID_stem, 8, make_AxisRotation(context_ptr->randu(float(0.45f*M_PI),0.52f*M_PI),0,M_PI), 0.015, 0.15, 1, 1, 0.6, "grapevine_cane" ); + uint uID_cane_R = appendShoot( plantID, uID_stem, 8, make_AxisRotation(context_ptr->randu(float(0.45f*M_PI),0.52f*M_PI),M_PI,M_PI), 0.015, 0.15, 1, 1, 0.6, "grapevine_cane" ); + +// makePlantDormant(plantID); + + removeShootLeaves( plantID, uID_stem ); + removeShootLeaves( plantID, uID_cane_L ); + removeShootLeaves( plantID, uID_cane_R ); + + setPlantPhenologicalThresholds(plantID, 0, -1, -1, 5, 8, 25, false); + + return plantID; + +} + +void PlantArchitecture::initializeOliveTreeShoots(){ + + // ---- Phytomer Parameters ---- // + + PhytomerParameters phytomer_parameters_olive(context_ptr->getRandomGenerator()); + + phytomer_parameters_olive.internode.pitch = 0; + phytomer_parameters_olive.internode.phyllotactic_angle.uniformDistribution(80, 100 ); + phytomer_parameters_olive.internode.length_segments = 1; + phytomer_parameters_olive.internode.image_texture = "plugins/plantarchitecture/assets/textures/OliveBark.jpg"; + phytomer_parameters_olive.internode.max_floral_buds_per_petiole = 3; + + phytomer_parameters_olive.petiole.petioles_per_internode = 2; + phytomer_parameters_olive.petiole.pitch.uniformDistribution(-40,-20); + phytomer_parameters_olive.petiole.taper = 0.1; + phytomer_parameters_olive.petiole.curvature = 0; + phytomer_parameters_olive.petiole.length = 0.01; + phytomer_parameters_olive.petiole.radius = 0.0005; + phytomer_parameters_olive.petiole.length_segments = 1; + phytomer_parameters_olive.petiole.radial_subdivisions = 3; + phytomer_parameters_olive.petiole.color = make_RGBcolor(0.61, 0.5, 0.24); + + phytomer_parameters_olive.leaf.leaves_per_petiole = 1; + phytomer_parameters_olive.leaf.prototype_function = OliveLeafPrototype; + phytomer_parameters_olive.leaf.prototype_scale = 0.07; + phytomer_parameters_olive.leaf.unique_prototypes = 1; + phytomer_parameters_olive.leaf.subdivisions = 1; + + phytomer_parameters_olive.peduncle.length = 0.065; + phytomer_parameters_olive.peduncle.radius = 0.001; + phytomer_parameters_olive.peduncle.pitch = 60; + phytomer_parameters_olive.peduncle.roll = 0; + phytomer_parameters_olive.peduncle.length_segments = 1; + phytomer_parameters_olive.peduncle.color = make_RGBcolor(0.7, 0.72, 0.7); + + phytomer_parameters_olive.inflorescence.flowers_per_peduncle = 10; + phytomer_parameters_olive.inflorescence.flower_offset = 0.13; + phytomer_parameters_olive.inflorescence.pitch.uniformDistribution(80,100); + phytomer_parameters_olive.inflorescence.roll.uniformDistribution(0,360); + phytomer_parameters_olive.inflorescence.flower_prototype_scale = 0.01; +// phytomer_parameters_olive.inflorescence.flower_prototype_function = OliveFlowerPrototype; + phytomer_parameters_olive.inflorescence.fruit_prototype_scale = 0.025; + phytomer_parameters_olive.inflorescence.fruit_prototype_function = OliveFruitPrototype; + + // ---- Shoot Parameters ---- // + + // Trunk + ShootParameters shoot_parameters_trunk(context_ptr->getRandomGenerator()); + shoot_parameters_trunk.phytomer_parameters = phytomer_parameters_olive; + shoot_parameters_trunk.phytomer_parameters.internode.phyllotactic_angle = 0; + shoot_parameters_trunk.phytomer_parameters.internode.radial_subdivisions = 20; + shoot_parameters_trunk.max_nodes = 20; + shoot_parameters_trunk.girth_area_factor = 3.f; + shoot_parameters_trunk.internode_radius_initial = 0.01; + shoot_parameters_trunk.vegetative_bud_break_probability = 0; + shoot_parameters_trunk.vegetative_bud_break_time = 0; + shoot_parameters_trunk.tortuosity = 6; + shoot_parameters_trunk.internode_length_max = 0.05; + shoot_parameters_trunk.internode_length_decay_rate = 0; + shoot_parameters_trunk.defineChildShootTypes({"scaffold"},{1}); + + // Proleptic shoots + ShootParameters shoot_parameters_proleptic(context_ptr->getRandomGenerator()); + shoot_parameters_proleptic.phytomer_parameters = phytomer_parameters_olive; +// shoot_parameters_proleptic.phytomer_parameters.phytomer_creation_function = OlivePhytomerCreationFunction; + shoot_parameters_proleptic.phytomer_parameters.phytomer_callback_function = OlivePhytomerCallbackFunction; + shoot_parameters_proleptic.max_nodes = 20; + shoot_parameters_proleptic.phyllochron = 1.0; + shoot_parameters_proleptic.elongation_rate = 0.25; + shoot_parameters_proleptic.girth_area_factor = 5.f; + shoot_parameters_proleptic.vegetative_bud_break_probability = 0.15; + shoot_parameters_proleptic.vegetative_bud_break_time = 0; + shoot_parameters_proleptic.leaf_flush_count = 1; + shoot_parameters_proleptic.gravitropic_curvature = 450; + shoot_parameters_proleptic.tortuosity = 25; + shoot_parameters_proleptic.internode_radius_initial = 0.002; + shoot_parameters_proleptic.insertion_angle_tip.uniformDistribution( 15, 25); + shoot_parameters_proleptic.insertion_angle_decay_rate = 2; + shoot_parameters_proleptic.internode_length_max = 0.05; + shoot_parameters_proleptic.internode_length_min = 0.03; + shoot_parameters_proleptic.internode_length_decay_rate = 0.004; + shoot_parameters_proleptic.fruit_set_probability = 0.25; + shoot_parameters_proleptic.flower_bud_break_probability = 0.25; + shoot_parameters_proleptic.max_terminal_floral_buds = 4; + shoot_parameters_proleptic.flowers_require_dormancy = true; + shoot_parameters_proleptic.growth_requires_dormancy = true; + shoot_parameters_proleptic.determinate_shoot_growth = false; + shoot_parameters_proleptic.defineChildShootTypes({"proleptic"},{1.0}); + + // Main scaffolds + ShootParameters shoot_parameters_scaffold = shoot_parameters_proleptic; + shoot_parameters_scaffold.phytomer_parameters.internode.radial_subdivisions = 10; + shoot_parameters_scaffold.max_nodes = 12; + shoot_parameters_scaffold.gravitropic_curvature = 700; + shoot_parameters_scaffold.internode_length_max = 0.04; + shoot_parameters_scaffold.tortuosity = 10; + shoot_parameters_scaffold.defineChildShootTypes({"proleptic"},{1.0}); + + defineShootType("trunk", shoot_parameters_trunk); + defineShootType("scaffold", shoot_parameters_scaffold); + defineShootType("proleptic", shoot_parameters_proleptic); + +} + +uint PlantArchitecture::buildOliveTree(const helios::vec3 &base_position) { + + if( shoot_types.empty() ){ + //automatically initialize almond tree shoots + initializeOliveTreeShoots(); + } + + uint plantID = addPlantInstance(base_position, 0); + + uint uID_trunk = addBaseStemShoot(plantID, 19, make_AxisRotation(context_ptr->randu(0.f, 0.05f * M_PI), context_ptr->randu(0.f, 2.f * M_PI), context_ptr->randu(0.f, 2.f * M_PI)), 0.015, 0.008, 1.f, 1.f, 0, "trunk"); + appendPhytomerToShoot( plantID, uID_trunk, shoot_types.at("trunk").phytomer_parameters, 0, 0.01, 1, 1); + + plant_instances.at(plantID).shoot_tree.at(uID_trunk)->meristem_is_alive = false; + + auto phytomers = plant_instances.at(plantID).shoot_tree.at(uID_trunk)->phytomers; + for( const auto & phytomer : phytomers ){ + phytomer->removeLeaf(); + phytomer->setVegetativeBudState(BUD_DEAD); + phytomer->setFloralBudState(BUD_DEAD); + } + + uint Nscaffolds = 4;//context_ptr->randu(4,5); + + for( int i=0; irandu(deg2rad(30), deg2rad(35)); + uint uID_shoot = addChildShoot( plantID, uID_trunk, getShootNodeCount(plantID,uID_trunk)-i-1, context_ptr->randu(5, 7), make_AxisRotation(pitch, (float(i) + context_ptr->randu(-0.2f, 0.2f)) / float(Nscaffolds) * 2 * M_PI, 0), 0.007, 0.06, 1.f, 1.f, 0.5, "scaffold", 0); + + } + + makePlantDormant(plantID); + + setPlantPhenologicalThresholds(plantID, 0, -1, 1, 3, 8, 20, true); + + return plantID; + +} + +void PlantArchitecture::initializePistachioTreeShoots(){ + + // ---- Phytomer Parameters ---- // + + PhytomerParameters phytomer_parameters_pistachio(context_ptr->getRandomGenerator()); + + phytomer_parameters_pistachio.internode.pitch = 0; + phytomer_parameters_pistachio.internode.phyllotactic_angle.uniformDistribution(160, 200); + phytomer_parameters_pistachio.internode.length_segments = 1; + phytomer_parameters_pistachio.internode.image_texture = "plugins/plantarchitecture/assets/textures/OliveBark.jpg"; + phytomer_parameters_pistachio.internode.max_floral_buds_per_petiole = 3; + + phytomer_parameters_pistachio.petiole.petioles_per_internode = 2; + phytomer_parameters_pistachio.petiole.pitch.uniformDistribution(-45, -60); + phytomer_parameters_pistachio.petiole.taper = 0.1; + phytomer_parameters_pistachio.petiole.curvature.uniformDistribution(-800,800); + phytomer_parameters_pistachio.petiole.length = 0.075; + phytomer_parameters_pistachio.petiole.radius = 0.001; + phytomer_parameters_pistachio.petiole.length_segments = 1; + phytomer_parameters_pistachio.petiole.radial_subdivisions = 3; + phytomer_parameters_pistachio.petiole.color = make_RGBcolor(0.6, 0.6, 0.4); + + phytomer_parameters_pistachio.leaf.leaves_per_petiole = 3; + phytomer_parameters_pistachio.leaf.prototype_function = PistachioLeafPrototype; + phytomer_parameters_pistachio.leaf.prototype_scale = 0.08; + phytomer_parameters_pistachio.leaf.leaflet_offset = 0.3; + phytomer_parameters_pistachio.leaf.leaflet_scale = 0.75; + phytomer_parameters_pistachio.leaf.pitch.uniformDistribution(-20,20); + phytomer_parameters_pistachio.leaf.roll.uniformDistribution(-20,20); + phytomer_parameters_pistachio.leaf.unique_prototypes = 5; + phytomer_parameters_pistachio.leaf.subdivisions = 3; + + phytomer_parameters_pistachio.peduncle.length = 0.1; + phytomer_parameters_pistachio.peduncle.radius = 0.001; + phytomer_parameters_pistachio.peduncle.pitch = 60; + phytomer_parameters_pistachio.peduncle.roll = 0; + phytomer_parameters_pistachio.peduncle.length_segments = 1; + phytomer_parameters_pistachio.peduncle.curvature.uniformDistribution(500,900); + phytomer_parameters_pistachio.peduncle.color = make_RGBcolor(0.7, 0.72, 0.7); + + phytomer_parameters_pistachio.inflorescence.flowers_per_peduncle = 16; + phytomer_parameters_pistachio.inflorescence.flower_offset = 0.08; + phytomer_parameters_pistachio.inflorescence.pitch.uniformDistribution(50, 70); + phytomer_parameters_pistachio.inflorescence.roll.uniformDistribution(0, 360); + phytomer_parameters_pistachio.inflorescence.flower_prototype_scale = 0.025; +// phytomer_parameters_pistachio.inflorescence.flower_prototype_function = PistachioFlowerPrototype; + phytomer_parameters_pistachio.inflorescence.fruit_prototype_scale = 0.025; + phytomer_parameters_pistachio.inflorescence.fruit_prototype_function = PistachioFruitPrototype; + + // ---- Shoot Parameters ---- // + + // Trunk + ShootParameters shoot_parameters_trunk(context_ptr->getRandomGenerator()); + shoot_parameters_trunk.phytomer_parameters = phytomer_parameters_pistachio; + shoot_parameters_trunk.phytomer_parameters.internode.phyllotactic_angle = 180; + shoot_parameters_trunk.phytomer_parameters.internode.radial_subdivisions = 20; + shoot_parameters_trunk.max_nodes = 20; + shoot_parameters_trunk.girth_area_factor = 5.f; + shoot_parameters_trunk.internode_radius_initial = 0.01; + shoot_parameters_trunk.vegetative_bud_break_probability = 0; + shoot_parameters_trunk.vegetative_bud_break_time = 0; + shoot_parameters_trunk.tortuosity = 5; + shoot_parameters_trunk.internode_length_max = 0.05; + shoot_parameters_trunk.internode_length_decay_rate = 0; + shoot_parameters_trunk.defineChildShootTypes({"proleptic"},{1}); + + // Proleptic shoots + ShootParameters shoot_parameters_proleptic(context_ptr->getRandomGenerator()); + shoot_parameters_proleptic.phytomer_parameters = phytomer_parameters_pistachio; + shoot_parameters_proleptic.phytomer_parameters.phytomer_creation_function = PistachioPhytomerCreationFunction; + shoot_parameters_proleptic.phytomer_parameters.phytomer_callback_function = PistachioPhytomerCallbackFunction; + shoot_parameters_proleptic.max_nodes = 20; + shoot_parameters_proleptic.phyllochron = 1; + shoot_parameters_proleptic.elongation_rate = 0.25; + shoot_parameters_proleptic.girth_area_factor = 10.f; + shoot_parameters_proleptic.vegetative_bud_break_probability = 0.15; + shoot_parameters_proleptic.vegetative_bud_break_time = 0; + shoot_parameters_proleptic.leaf_flush_count = 1; + shoot_parameters_proleptic.gravitropic_curvature = 500; + shoot_parameters_proleptic.tortuosity = 15; + shoot_parameters_proleptic.internode_radius_initial = 0.002; + shoot_parameters_proleptic.insertion_angle_tip.uniformDistribution( 45, 55); + shoot_parameters_proleptic.insertion_angle_decay_rate = 10; + shoot_parameters_proleptic.internode_length_max = 0.04; + shoot_parameters_proleptic.internode_length_min = 0.02; + shoot_parameters_proleptic.internode_length_decay_rate = 0.005; + shoot_parameters_proleptic.fruit_set_probability = 0.35; + shoot_parameters_proleptic.flower_bud_break_probability = 0.35; + shoot_parameters_proleptic.max_terminal_floral_buds = 4; + shoot_parameters_proleptic.flowers_require_dormancy = true; + shoot_parameters_proleptic.growth_requires_dormancy = true; + shoot_parameters_proleptic.determinate_shoot_growth = false; + + defineShootType("trunk", shoot_parameters_trunk); + defineShootType("proleptic", shoot_parameters_proleptic); + +} + +uint PlantArchitecture::buildPistachioTree(const helios::vec3 &base_position) { + + if( shoot_types.empty() ){ + //automatically initialize almond tree shoots + initializePistachioTreeShoots(); + } + + uint plantID = addPlantInstance(base_position, 0); + + uint uID_trunk = addBaseStemShoot(plantID, 19, make_AxisRotation(context_ptr->randu(0.f, 0.05f * M_PI), context_ptr->randu(0.f, 2.f * M_PI), context_ptr->randu(0.f, 2.f * M_PI)), 0.015, 0.03, 1.f, 1.f, 0, "trunk"); + appendPhytomerToShoot( plantID, uID_trunk, shoot_types.at("trunk").phytomer_parameters, 0, 0.01, 1, 1); + + plant_instances.at(plantID).shoot_tree.at(uID_trunk)->meristem_is_alive = false; + + auto phytomers = plant_instances.at(plantID).shoot_tree.at(uID_trunk)->phytomers; + for( const auto & phytomer : phytomers ){ + phytomer->removeLeaf(); + phytomer->setVegetativeBudState(BUD_DEAD); + phytomer->setFloralBudState(BUD_DEAD); + } + + uint Nscaffolds = 4;//context_ptr->randu(4,5); + + for( int i=0; irandu(deg2rad(65), deg2rad(80)); + uint uID_shoot = addChildShoot( plantID, uID_trunk, getShootNodeCount(plantID,uID_trunk)-i-1, 1, make_AxisRotation(pitch, (float(i) + context_ptr->randu(-0.2f, 0.2f)) / float(Nscaffolds) * 2 * M_PI, 0), 0.007, 0.06, 1.f, 1.f, 0.5, "proleptic", 0); + + } + + makePlantDormant(plantID); + + setPlantPhenologicalThresholds(plantID, 0, -1, -1, 4, 8, 20, false); return plantID; @@ -895,7 +1476,7 @@ void PlantArchitecture::initializePuncturevineShoots() { phytomer_parameters_puncturevine.leaf.subdivisions = 3; phytomer_parameters_puncturevine.peduncle.length = 0.001; - phytomer_parameters_puncturevine.inflorescence.flowers_per_rachis = 1; + phytomer_parameters_puncturevine.inflorescence.flowers_per_peduncle = 1; phytomer_parameters_puncturevine.inflorescence.pitch = -90.f; phytomer_parameters_puncturevine.inflorescence.flower_prototype_function = PuncturevineFlowerPrototype; phytomer_parameters_puncturevine.inflorescence.flower_prototype_scale = 0.006; @@ -910,7 +1491,7 @@ void PlantArchitecture::initializePuncturevineShoots() { shoot_parameters_primary.internode_radius_initial = 0.001; shoot_parameters_primary.phyllochron = 1; shoot_parameters_primary.elongation_rate = 0.2; - shoot_parameters_primary.girth_growth_rate = 0.; + shoot_parameters_primary.girth_area_factor = 0.f; shoot_parameters_primary.internode_length_max = 0.02; shoot_parameters_primary.internode_length_decay_rate = 0; shoot_parameters_primary.insertion_angle_tip.uniformDistribution(50, 80); @@ -934,7 +1515,6 @@ void PlantArchitecture::initializePuncturevineShoots() { shoot_parameters_base.internode_radius_initial = 0.001; shoot_parameters_base.phyllochron = 1; shoot_parameters_base.elongation_rate = 0.25; - shoot_parameters_base.girth_growth_rate = 0.; shoot_parameters_base.gravitropic_curvature = 0; shoot_parameters_base.internode_length_max = 0.01; shoot_parameters_base.internode_length_decay_rate = 0; @@ -956,20 +1536,20 @@ void PlantArchitecture::initializePuncturevineShoots() { } -uint PlantArchitecture::buildPuncturevinePlant(const helios::vec3 &base_position, float age) { +uint PlantArchitecture::buildPuncturevinePlant(const helios::vec3 &base_position) { if (shoot_types.empty()) { //automatically initialize puncturevine plant shoots initializePuncturevineShoots(); } - uint plantID = addPlantInstance(base_position, age); + uint plantID = addPlantInstance(base_position, 0); uint uID_stem = addBaseStemShoot(plantID, 3, make_AxisRotation(0, 0.f, 0.f), 0.001, 0.001, 1, 1, 0, "base_puncturevine"); breakPlantDormancy(plantID); - setPlantPhenologicalThresholds(plantID, 0, -1, 7, 1000, 5, 100); + setPlantPhenologicalThresholds(plantID, 0, -1, 7, 1000, 5, 100, false); return plantID; @@ -1010,7 +1590,7 @@ void PlantArchitecture::initializeEasternRedbudShoots() { phytomer_parameters_redbud.peduncle.pitch.uniformDistribution(50,90); phytomer_parameters_redbud.peduncle.color = make_RGBcolor(0.32, 0.05, 0.13); - phytomer_parameters_redbud.inflorescence.flowers_per_rachis = 1; + phytomer_parameters_redbud.inflorescence.flowers_per_peduncle = 1; phytomer_parameters_redbud.inflorescence.pitch = 0; phytomer_parameters_redbud.inflorescence.flower_prototype_function = RedbudFlowerPrototype; phytomer_parameters_redbud.inflorescence.flower_prototype_scale = 0.04; @@ -1029,7 +1609,7 @@ void PlantArchitecture::initializeEasternRedbudShoots() { shoot_parameters_main.vegetative_bud_break_time = 1; shoot_parameters_main.phyllochron = 1.5; shoot_parameters_main.elongation_rate = 0.17; - shoot_parameters_main.girth_growth_rate = 0.00045; + shoot_parameters_main.girth_area_factor = 3.f; shoot_parameters_main.gravitropic_curvature = 300; shoot_parameters_main.tortuosity = 20; shoot_parameters_main.internode_length_max = 0.04; @@ -1063,6 +1643,27 @@ void PlantArchitecture::initializeEasternRedbudShoots() { } +uint PlantArchitecture::buildEasternRedbudPlant(const helios::vec3 &base_position) { + + if (shoot_types.empty()) { + //automatically initialize redbud plant shoots + initializeEasternRedbudShoots(); + } + + uint plantID = addPlantInstance(base_position, 0); + + uint uID_stem = addBaseStemShoot(plantID, 16, make_AxisRotation(context_ptr->randu(0,0.1*M_PI), context_ptr->randu(0,2*M_PI), context_ptr->randu(0,2*M_PI)), 0.0075, 0.05, 1, 1, 0.4, "eastern_redbud_trunk"); + + makePlantDormant(plantID); + + removeShootLeaves( plantID, uID_stem ); + + setPlantPhenologicalThresholds(plantID, 0, -1, 1, 3, 3, 12, false); + + return plantID; + +} + void PlantArchitecture::initializeRomaineLettuceShoots() { // ---- Phytomer Parameters ---- // @@ -1101,7 +1702,7 @@ void PlantArchitecture::initializeRomaineLettuceShoots() { shoot_parameters_mainstem.internode_radius_initial = 0.01; shoot_parameters_mainstem.phyllochron = 1; shoot_parameters_mainstem.elongation_rate = 0.15; - shoot_parameters_mainstem.girth_growth_rate = 0; + shoot_parameters_mainstem.girth_area_factor = 0.f; shoot_parameters_mainstem.gravitropic_curvature = 10; shoot_parameters_mainstem.internode_length_max = 0.001; shoot_parameters_mainstem.internode_length_decay_rate = 0; @@ -1115,41 +1716,20 @@ void PlantArchitecture::initializeRomaineLettuceShoots() { } -uint PlantArchitecture::buildRomaineLettucePlant(const helios::vec3 &base_position, float age) { +uint PlantArchitecture::buildRomaineLettucePlant(const helios::vec3 &base_position) { if (shoot_types.empty()) { //automatically initialize sugarbeet plant shoots initializeSugarbeetShoots(); } - uint plantID = addPlantInstance(base_position, age); + uint plantID = addPlantInstance(base_position, 0); uint uID_stem = addBaseStemShoot(plantID, 3, make_AxisRotation(context_ptr->randu(0.f, 0.03f * M_PI), context_ptr->randu(0.f, 2.f * M_PI), 0.25f * M_PI), 0.005, 0.001, 1, 1, 0, "mainstem"); breakPlantDormancy(plantID); - setPlantPhenologicalThresholds(plantID, 0, 1000, 10, 60, 5, 100); - - return plantID; - -} - -uint PlantArchitecture::buildEasternRedbudPlant(const helios::vec3 &base_position, float age) { - - if (shoot_types.empty()) { - //automatically initialize redbud plant shoots - initializeEasternRedbudShoots(); - } - - uint plantID = addPlantInstance(base_position, age); - - uint uID_stem = addBaseStemShoot(plantID, 16, make_AxisRotation(context_ptr->randu(0,0.1*M_PI), context_ptr->randu(0,2*M_PI), context_ptr->randu(0,2*M_PI)), 0.0075, 0.05, 1, 1, 0.4, "eastern_redbud_trunk"); - - makePlantDormant(plantID); - - removeShootLeaves( plantID, uID_stem ); - - setPlantPhenologicalThresholds(plantID, 0, -1, 1, 3, 3, 12); + setPlantPhenologicalThresholds(plantID, 0, 1000, 10, 60, 5, 100, false); return plantID; @@ -1191,7 +1771,7 @@ void PlantArchitecture::initializeSorghumShoots() { phytomer_parameters_sorghum.peduncle.color = phytomer_parameters_sorghum.internode.color; phytomer_parameters_sorghum.peduncle.radial_subdivisions = 10; - phytomer_parameters_sorghum.inflorescence.flowers_per_rachis = 1; + phytomer_parameters_sorghum.inflorescence.flowers_per_peduncle = 1; phytomer_parameters_sorghum.inflorescence.pitch = 0; phytomer_parameters_sorghum.inflorescence.roll = 0; phytomer_parameters_sorghum.inflorescence.fruit_prototype_scale = 0.16; @@ -1208,7 +1788,7 @@ void PlantArchitecture::initializeSorghumShoots() { shoot_parameters_mainstem.internode_radius_initial = 0.003; shoot_parameters_mainstem.phyllochron = 1; shoot_parameters_mainstem.elongation_rate = 0.15; - shoot_parameters_mainstem.girth_growth_rate = 0.0015; + shoot_parameters_mainstem.girth_area_factor = 5.f; shoot_parameters_mainstem.internode_radius_max = 0.015; shoot_parameters_mainstem.gravitropic_curvature.uniformDistribution(-1000,-400); shoot_parameters_mainstem.internode_length_max = 0.26; @@ -1226,20 +1806,20 @@ void PlantArchitecture::initializeSorghumShoots() { } -uint PlantArchitecture::buildSorghumPlant(const helios::vec3 &base_position, float age) { +uint PlantArchitecture::buildSorghumPlant(const helios::vec3 &base_position) { if (shoot_types.empty()) { //automatically initialize sorghum plant shoots initializeSorghumShoots(); } - uint plantID = addPlantInstance(base_position - make_vec3(0,0,0.025), age); + uint plantID = addPlantInstance(base_position - make_vec3(0,0,0.025), 0); uint uID_stem = addBaseStemShoot(plantID, 1, make_AxisRotation(context_ptr->randu(0.f, 0.075f * M_PI), context_ptr->randu(0.f, 2.f * M_PI), context_ptr->randu(0.f, 2.f * M_PI)), 0.003, 0.06, 0.01, 0.01, 0, "mainstem"); breakPlantDormancy(plantID); - setPlantPhenologicalThresholds(plantID, 0, -1, -1, 2, 5, 100); + setPlantPhenologicalThresholds(plantID, 0, -1, -1, 2, 5, 100, false); return plantID; @@ -1285,9 +1865,8 @@ void PlantArchitecture::initializeSoybeanShoots() { phytomer_parameters_trifoliate.peduncle.length_segments = 1; phytomer_parameters_trifoliate.peduncle.radial_subdivisions = 6; - phytomer_parameters_trifoliate.inflorescence.flowers_per_rachis.uniformDistribution(1, 4); + phytomer_parameters_trifoliate.inflorescence.flowers_per_peduncle.uniformDistribution(1, 4); phytomer_parameters_trifoliate.inflorescence.flower_offset = 0.2; - phytomer_parameters_trifoliate.inflorescence.flower_arrangement_pattern = "opposite"; phytomer_parameters_trifoliate.inflorescence.pitch.uniformDistribution(50,70); phytomer_parameters_trifoliate.inflorescence.roll.uniformDistribution(-20,20); phytomer_parameters_trifoliate.inflorescence.flower_prototype_scale = 0.015; @@ -1330,7 +1909,7 @@ void PlantArchitecture::initializeSoybeanShoots() { shoot_parameters_trifoliate.phyllochron = 1; // shoot_parameters_trifoliate.leaf_flush_count = 1; (default) shoot_parameters_trifoliate.elongation_rate = 0.15; - shoot_parameters_trifoliate.girth_growth_rate = 0.0003; + shoot_parameters_trifoliate.girth_area_factor = 25.f; shoot_parameters_trifoliate.vegetative_bud_break_time = 3; shoot_parameters_trifoliate.vegetative_bud_break_probability = 0.25; // shoot_parameters_trifoliate.max_terminal_floral_buds = 0; (default) @@ -1468,14 +2047,14 @@ void PlantArchitecture::initializeSoybeanShoots() { } -uint PlantArchitecture::buildSoybeanPlant(const helios::vec3 &base_position, float age) { +uint PlantArchitecture::buildSoybeanPlant(const helios::vec3 &base_position) { if (shoot_types.empty()) { //automatically initialize bean plant shoots initializeSoybeanShoots(); } - uint plantID = addPlantInstance(base_position, age); + uint plantID = addPlantInstance(base_position, 0); AxisRotation base_rotation = make_AxisRotation(context_ptr->randu(0.f, 0.05f * M_PI), context_ptr->randu(0.f, 2.f * M_PI), context_ptr->randu(0.f, 2.f * M_PI)); uint uID_unifoliate = addBaseStemShoot(plantID, 1, base_rotation, 0.0005, 0.01, 0.01, 0.01, 0, "unifoliate"); @@ -1484,7 +2063,7 @@ uint PlantArchitecture::buildSoybeanPlant(const helios::vec3 &base_position, flo breakPlantDormancy(plantID); - setPlantPhenologicalThresholds(plantID, 0, 15, 3, 3, 5, 100); + setPlantPhenologicalThresholds(plantID, 0, 15, 3, 3, 5, 100, false); return plantID; @@ -1530,9 +2109,8 @@ void PlantArchitecture::initializeStrawberryShoots() { phytomer_parameters.peduncle.radial_subdivisions = 6; phytomer_parameters.peduncle.color = phytomer_parameters.petiole.color; - phytomer_parameters.inflorescence.flowers_per_rachis.uniformDistribution(1,3); + phytomer_parameters.inflorescence.flowers_per_peduncle.uniformDistribution(1, 3); phytomer_parameters.inflorescence.flower_offset = 0.2; - phytomer_parameters.inflorescence.flower_arrangement_pattern = "alternate"; phytomer_parameters.inflorescence.pitch = 70; phytomer_parameters.inflorescence.roll = 90; phytomer_parameters.inflorescence.flower_prototype_scale = 0.04; @@ -1562,7 +2140,7 @@ void PlantArchitecture::initializeStrawberryShoots() { shoot_parameters.phyllochron = 1.; shoot_parameters.leaf_flush_count = 1; shoot_parameters.elongation_rate = 0.1; - shoot_parameters.girth_growth_rate = 0.0003; + shoot_parameters.girth_area_factor = 10.f; shoot_parameters.vegetative_bud_break_time = 3; shoot_parameters.vegetative_bud_break_probability = 0.25; shoot_parameters.flower_bud_break_probability = 1; @@ -1577,21 +2155,21 @@ void PlantArchitecture::initializeStrawberryShoots() { } -uint PlantArchitecture::buildStrawberryPlant(const helios::vec3 &base_position, float age) { +uint PlantArchitecture::buildStrawberryPlant(const helios::vec3 &base_position) { if (shoot_types.empty()) { //automatically initialize strawberry plant shoots initializeStrawberryShoots(); } - uint plantID = addPlantInstance(base_position, age); + uint plantID = addPlantInstance(base_position, 0); AxisRotation base_rotation = make_AxisRotation(0, context_ptr->randu(0.f, 2.f * M_PI), context_ptr->randu(0.f, 2.f * M_PI)); uint uID_stem = addBaseStemShoot(plantID, 1, base_rotation, 0.001, 0.004, 0.01, 0.01, 0, "mainstem"); breakPlantDormancy(plantID); - setPlantPhenologicalThresholds(plantID, 0, -1, 10, 3, 1, 100); + setPlantPhenologicalThresholds(plantID, 0, -1, 10, 3, 1, 100, false); return plantID; @@ -1633,7 +2211,7 @@ void PlantArchitecture::initializeSugarbeetShoots() { shoot_parameters_mainstem.internode_radius_initial = 0.005; shoot_parameters_mainstem.phyllochron = 1; shoot_parameters_mainstem.elongation_rate = 0.25; - shoot_parameters_mainstem.girth_growth_rate = 0; + shoot_parameters_mainstem.girth_area_factor = 20.f; shoot_parameters_mainstem.gravitropic_curvature = 10; shoot_parameters_mainstem.internode_length_max = 0.001; shoot_parameters_mainstem.internode_length_decay_rate = 0; @@ -1647,20 +2225,20 @@ void PlantArchitecture::initializeSugarbeetShoots() { } -uint PlantArchitecture::buildSugarbeetPlant(const helios::vec3 &base_position, float age) { +uint PlantArchitecture::buildSugarbeetPlant(const helios::vec3 &base_position) { if (shoot_types.empty()) { //automatically initialize sugarbeet plant shoots initializeSugarbeetShoots(); } - uint plantID = addPlantInstance(base_position, age); + uint plantID = addPlantInstance(base_position, 0); uint uID_stem = addBaseStemShoot(plantID, 3, make_AxisRotation(context_ptr->randu(0.f, 0.01f * M_PI), 0.f * context_ptr->randu(0.f, 2.f * M_PI), 0.25f * M_PI), 0.005, 0.001, 1, 1, 0, "mainstem"); breakPlantDormancy(plantID); - setPlantPhenologicalThresholds(plantID, 0, 1000, 10, 60, 5, 100); + setPlantPhenologicalThresholds(plantID, 0, 1000, 10, 60, 5, 100, false); return plantID; @@ -1680,7 +2258,7 @@ void PlantArchitecture::initializeTomatoShoots() { phytomer_parameters.petiole.petioles_per_internode = 1; phytomer_parameters.petiole.pitch.uniformDistribution(45,60); phytomer_parameters.petiole.radius = 0.002; - phytomer_parameters.petiole.length = 0.3; + phytomer_parameters.petiole.length = 0.2; phytomer_parameters.petiole.taper = 0.15; phytomer_parameters.petiole.curvature.uniformDistribution(-150,-50); phytomer_parameters.petiole.color = phytomer_parameters.internode.color; @@ -1706,9 +2284,8 @@ void PlantArchitecture::initializeTomatoShoots() { phytomer_parameters.peduncle.length_segments = 5; phytomer_parameters.peduncle.radial_subdivisions = 8; - phytomer_parameters.inflorescence.flowers_per_rachis = 8; + phytomer_parameters.inflorescence.flowers_per_peduncle = 8; phytomer_parameters.inflorescence.flower_offset = 0.15; - phytomer_parameters.inflorescence.flower_arrangement_pattern = "opposite"; phytomer_parameters.inflorescence.pitch = 90; phytomer_parameters.inflorescence.roll.uniformDistribution(-30,30); phytomer_parameters.inflorescence.flower_prototype_scale = 0.03; @@ -1739,7 +2316,7 @@ void PlantArchitecture::initializeTomatoShoots() { shoot_parameters.phyllochron = 1; shoot_parameters.leaf_flush_count = 1; shoot_parameters.elongation_rate = 0.1; - shoot_parameters.girth_growth_rate = 0.0002; + shoot_parameters.girth_area_factor = 3.f; shoot_parameters.vegetative_bud_break_time = 3; shoot_parameters.vegetative_bud_break_probability = 0.6; shoot_parameters.flower_bud_break_probability = 0.5; @@ -1754,21 +2331,21 @@ void PlantArchitecture::initializeTomatoShoots() { } -uint PlantArchitecture::buildTomatoPlant(const helios::vec3 &base_position, float age) { +uint PlantArchitecture::buildTomatoPlant(const helios::vec3 &base_position) { if (shoot_types.empty()) { //automatically initialize tomato plant shoots initializeTomatoShoots(); } - uint plantID = addPlantInstance(base_position, age); + uint plantID = addPlantInstance(base_position, 0); AxisRotation base_rotation = make_AxisRotation(0, context_ptr->randu(0.f, 2.f * M_PI), context_ptr->randu(0.f, 2.f * M_PI)); uint uID_stem = addBaseStemShoot(plantID, 1, base_rotation, 0.002, 0.04, 0.01, 0.01, 0, "mainstem"); breakPlantDormancy(plantID); - setPlantPhenologicalThresholds(plantID, 0, -1, 10, 3, 2, 100); + setPlantPhenologicalThresholds(plantID, 0, -1, 10, 3, 2, 100, false); return plantID; @@ -1811,7 +2388,7 @@ void PlantArchitecture::initializeWheatShoots() { phytomer_parameters_wheat.peduncle.curvature = -200; phytomer_parameters_wheat.peduncle.radial_subdivisions = 6; - phytomer_parameters_wheat.inflorescence.flowers_per_rachis = 1; + phytomer_parameters_wheat.inflorescence.flowers_per_peduncle = 1; phytomer_parameters_wheat.inflorescence.pitch = 0; phytomer_parameters_wheat.inflorescence.roll = 0; phytomer_parameters_wheat.inflorescence.fruit_prototype_scale = 0.1; @@ -1828,7 +2405,7 @@ void PlantArchitecture::initializeWheatShoots() { shoot_parameters_mainstem.internode_radius_initial = 0.001; shoot_parameters_mainstem.phyllochron = 1; shoot_parameters_mainstem.elongation_rate = 0.15; - shoot_parameters_mainstem.girth_growth_rate = 0.0015; + shoot_parameters_mainstem.girth_area_factor = 7.f; shoot_parameters_mainstem.internode_radius_max = 0.0025; shoot_parameters_mainstem.gravitropic_curvature.uniformDistribution(-2000,-800); shoot_parameters_mainstem.internode_length_max = 0.025; @@ -1846,20 +2423,20 @@ void PlantArchitecture::initializeWheatShoots() { } -uint PlantArchitecture::buildWheatPlant(const helios::vec3 &base_position, float age) { +uint PlantArchitecture::buildWheatPlant(const helios::vec3 &base_position) { if (shoot_types.empty()) { //automatically initialize wheat plant shoots initializeWheatShoots(); } - uint plantID = addPlantInstance(base_position - make_vec3(0,0,0.025), age); + uint plantID = addPlantInstance(base_position - make_vec3(0,0,0.025), 0); uint uID_stem = addBaseStemShoot(plantID, 1, make_AxisRotation(context_ptr->randu(0.f, 0.1f * M_PI), context_ptr->randu(0.f, 2.f * M_PI), context_ptr->randu(0.f, 2.f * M_PI)), 0.001, 0.025, 0.01, 0.01, 0, "mainstem"); breakPlantDormancy(plantID); - setPlantPhenologicalThresholds(plantID, 0, -1, -1, 2, 5, 100); + setPlantPhenologicalThresholds(plantID, 0, -1, -1, 2, 5, 100, false); return plantID; diff --git a/plugins/radiation/doc/Radiation.dox b/plugins/radiation/doc/Radiation.dox index e81125b8c..b1dfca1a1 100755 --- a/plugins/radiation/doc/Radiation.dox +++ b/plugins/radiation/doc/Radiation.dox @@ -458,7 +458,7 @@ If you are using a PC, it is likely you will need to increase the GPU timeout in If the reflectivity or transmissivity are set to values greater than 0, scattering calculations are required to simulate the reflected or transmitted radiation transport. These scattering calculations are performed iteratively until there is no energy left to be scattered. The number of scattering iterations is defined using: ~~~~~~{.cpp} - radiationmodel.setScatteringDepth( "PAR", 5); //set the number of scattering iterations + radiationmodel.setScatteringDepth( "PAR", 3); //set the number of scattering iterations ~~~~~~ \subsection RadPeriodic Periodic Boundary Conditions diff --git a/plugins/radiation/include/RadiationModel.h b/plugins/radiation/include/RadiationModel.h index f4b4846e0..a05678ecc 100755 --- a/plugins/radiation/include/RadiationModel.h +++ b/plugins/radiation/include/RadiationModel.h @@ -303,12 +303,14 @@ class RadiationModel{ //! Sets variable directRayCount, the number of rays to be used in direct radiation model. /** \param[in] N Number of rays + \note Default is 100 rays/primitive. */ void setDirectRayCount(const std::string &label, size_t N ); //! Sets variable diffuseRayCount, the number of rays to be used in diffuse (ambient) radiation model. /** \param[in] N Number of rays + \note Default is 1000 rays/primitive. */ void setDiffuseRayCount(const std::string &label, size_t N ); @@ -1652,6 +1654,13 @@ class RadiationModel{ }; +//! Validates the file path for output file writing by 1) making sure the directory string has a trailing slash, 2) creating the output directory if it does not exist. +/** + * \param[inout] output_directory Path to the directory where output files will be written. If the directory does not exist, it will be created. + * \return True if the output directory is valid, false otherwise. +*/ +bool validateOutputPath(std::ostringstream &output_directory); + void sutilHandleError(RTcontext context, RTresult code, const char* file, int line); void sutilReportError(const char* message); diff --git a/plugins/radiation/src/RadiationModel.cpp b/plugins/radiation/src/RadiationModel.cpp index 59fd4d799..cd53306c1 100755 --- a/plugins/radiation/src/RadiationModel.cpp +++ b/plugins/radiation/src/RadiationModel.cpp @@ -1342,10 +1342,8 @@ void RadiationModel::writeCameraImage(const std::string &camera, const std::vect std::ostringstream outfile; - if( image_path.find_last_of('/')==image_path.length()-1 ) { - outfile << image_path; - }else { - outfile << image_path << "/"; + if( !validateOutputPath(outfile) ){ + helios_runtime_error("ERROR (RadiationModel::writeCameraImage): Invalid image output directory '" + outfile.str() + "'. Check that the path exists and that you have write permission."); } if( frame>=0 ) { @@ -1451,10 +1449,8 @@ void RadiationModel::writeCameraImageData(const std::string &camera, const std:: std::ostringstream outfile; - if( image_path.find_last_of('/')==image_path.length()-1 ) { - outfile << image_path; - }else { - outfile << image_path << "/"; + if( !validateOutputPath(outfile) ){ + helios_runtime_error("ERROR (RadiationModel::writeCameraImage): Invalid image output directory '" + outfile.str() + "'. Check that the path exists and that you have write permission."); } if( frame>=0 ) { @@ -5098,10 +5094,8 @@ void RadiationModel::writePrimitiveDataLabelMap(const std::string &cameralabel, std::ostringstream outfile; - if( image_path.find_last_of('/')==image_path.length()-1 ) { - outfile << image_path; - }else { - outfile << image_path << "/"; + if( !validateOutputPath(outfile) ){ + helios_runtime_error("ERROR (RadiationModel::writeCameraImage): Invalid image output directory '" + outfile.str() + "'. Check that the path exists and that you have write permission."); } if( frame>=0 ) { @@ -5187,10 +5181,8 @@ void RadiationModel::writeObjectDataLabelMap(const std::string &cameralabel, con std::ostringstream outfile; - if( image_path.find_last_of('/')==image_path.length()-1 ) { - outfile << image_path; - }else { - outfile << image_path << "/"; + if( !validateOutputPath(outfile) ){ + helios_runtime_error("ERROR (RadiationModel::writeCameraImage): Invalid image output directory '" + outfile.str() + "'. Check that the path exists and that you have write permission."); } if( frame>=0 ) { @@ -5278,10 +5270,8 @@ void RadiationModel::writeDepthImageData(const std::string &cameralabel, const s std::ostringstream outfile; - if( image_path.find_last_of('/')==image_path.length()-1 ) { - outfile << image_path; - }else { - outfile << image_path << "/"; + if( !validateOutputPath(outfile) ){ + helios_runtime_error("ERROR (RadiationModel::writeCameraImage): Invalid image output directory '" + outfile.str() + "'. Check that the path exists and that you have write permission."); } if( frame>=0 ) { @@ -5332,10 +5322,8 @@ void RadiationModel::writeNormDepthImage(const std::string &cameralabel, const s std::ostringstream outfile; - if( image_path.find_last_of('/')==image_path.length()-1 ) { - outfile << image_path; - }else { - outfile << image_path << "/"; + if( !validateOutputPath(outfile) ){ + helios_runtime_error("ERROR (RadiationModel::writeCameraImage): Invalid image output directory '" + outfile.str() + "'. Check that the path exists and that you have write permission."); } if( frame>=0 ) { @@ -5400,10 +5388,8 @@ void RadiationModel::writeImageBoundingBoxes(const std::string &cameralabel, con std::ostringstream outfile; - if( image_path.find_last_of('/')==image_path.length()-1 ) { - outfile << image_path; - }else { - outfile << image_path << "/"; + if( !validateOutputPath(outfile) ){ + helios_runtime_error("ERROR (RadiationModel::writeCameraImage): Invalid image output directory '" + outfile.str() + "'. Check that the path exists and that you have write permission."); } if( frame>=0 ) { @@ -5507,10 +5493,8 @@ void RadiationModel::writeImageBoundingBoxes_ObjectData(const std::string &camer std::ostringstream outfile; - if( image_path.find_last_of('/')==image_path.length()-1 ) { - outfile << image_path; - }else { - outfile << image_path << "/"; + if( !validateOutputPath(outfile) ){ + helios_runtime_error("ERROR (RadiationModel::writeCameraImage): Invalid image output directory '" + outfile.str() + "'. Check that the path exists and that you have write permission."); } if( frame>=0 ) { @@ -5740,6 +5724,24 @@ std::vector RadiationModel::generateGaussianCameraResponse(float F return cameraresponse; } +bool validateOutputPath(std::ostringstream &output_directory){ + + // Make sure directory has a trailing slash + if( output_directory.str().find_last_of('/')!=output_directory.str().length()-1 ) { + output_directory << "/"; + } + + // Create the output directory if it does not exist + if( !std::filesystem::exists(output_directory.str()) ){ + if( !std::filesystem::create_directory(output_directory.str()) ){ + return false; + } + } + + return true; + +} + void sutilHandleError(RTcontext context, RTresult code, const char* file, int line) { const char* message; diff --git a/plugins/stomatalconductance/src/StomatalConductanceModel.cpp b/plugins/stomatalconductance/src/StomatalConductanceModel.cpp index efc2364fb..a5275a256 100755 --- a/plugins/stomatalconductance/src/StomatalConductanceModel.cpp +++ b/plugins/stomatalconductance/src/StomatalConductanceModel.cpp @@ -185,7 +185,7 @@ void StomatalConductanceModel::setModelCoefficients(const BMFcoefficients &coeff } void StomatalConductanceModel::setBMFCoefficientsFromLibrary(const std::string &species_name) { - BMFcoefficients coeffs; + BMFcoefficients coeffs = getBMFCoefficientsFromLibrary(species_name); BMFcoeffs = coeffs; BMFmodel_coefficients.clear(); model = "BMF"; diff --git a/plugins/syntheticannotation/src/SyntheticAnnotation.cpp b/plugins/syntheticannotation/src/SyntheticAnnotation.cpp index ebc6beee7..012112902 100644 --- a/plugins/syntheticannotation/src/SyntheticAnnotation.cpp +++ b/plugins/syntheticannotation/src/SyntheticAnnotation.cpp @@ -268,24 +268,23 @@ void SyntheticAnnotation::render( const char* outputdir ) { odir += '/'; } - //check that output directory exists, if not create it - std::string createdir = "mkdir -p "; - createdir += odir; - int dir = system(createdir.c_str()); - if (dir < 0) { + std::string slash = "/"; +#ifdef _WIN32 + std::replace(odir.begin(), odir.end(), '/', '\\'); + slash = "\\"; +#endif + bool dir = std::filesystem::create_directory(odir); + if (!dir && !std::filesystem::exists(odir)) { helios_runtime_error("ERROR (SyntheticAnnotation::render): output directory " + std::string(outputdir) + " could not be created. Exiting..."); } //create sub-directory structure for each view - //std::string viewdir; for( int d=0; d &texture, if (setjmp(jerr.setjmp_buffer)) { jpeg_destroy_decompress(&cinfo); fclose(infile); - return 0; + helios_runtime_error("ERROR (read_JPEG_file): Error reading JPEG file " + std::string(filename)); } jpeg_create_decompress(&cinfo); diff --git a/plugins/weberpenntree/include/WeberPennTree.h b/plugins/weberpenntree/include/WeberPennTree.h index 564fd16d9..37da11f7b 100755 --- a/plugins/weberpenntree/include/WeberPennTree.h +++ b/plugins/weberpenntree/include/WeberPennTree.h @@ -25,13 +25,13 @@ struct WeberPennTreeParameters{ int Shape; // Fractional branchless area at tree base - float BaseSize; + float BaseSize, BaseSizeV; // Number of splits at tree base - uint BaseSplits; + uint BaseSplits, BaseSplitsV; // Fractional height of split (if BaseSplits>0) - float BaseSplitSize; + float BaseSplitSize, BaseSplitSizeV; // Size and scaling of tree float Scale, ScaleV, ZScale, ZScaleV; @@ -212,8 +212,10 @@ class WeberPennTree{ \param[in] "offset_child" Length in meters of the child along the parent's branch \param[in] "phirot" Angle of rotation of child about parent's z-axis \param[in] "scale" Tree scaling factor + \param[in] "base_size" Base size computed (with the configured variance) for this specific tree instance + \param[in] "base_splits" Number of base splits computed (with the configured variance) for this specific tree instance */ - void recursiveBranch( WeberPennTreeParameters parameters, uint n, uint seg_start, helios::vec3 base_position, helios::vec3 parent_normal, helios::SphericalCoord child_rotation, float length_parent, float radius_parent, float offset_child, helios::vec3 origin, float scale, const uint leaf_template ); + void recursiveBranch( WeberPennTreeParameters parameters, uint n, uint seg_start, helios::vec3 base_position, helios::vec3 parent_normal, helios::SphericalCoord child_rotation, float length_parent, float radius_parent, float offset_child, helios::vec3 origin, float scale, const uint leaf_template, float base_size, uint base_splits ); float getVariation( float V ); diff --git a/plugins/weberpenntree/src/WeberPennTree.cpp b/plugins/weberpenntree/src/WeberPennTree.cpp index 506c960ec..91eb5094c 100755 --- a/plugins/weberpenntree/src/WeberPennTree.cpp +++ b/plugins/weberpenntree/src/WeberPennTree.cpp @@ -161,18 +161,30 @@ uint WeberPennTree::buildTree( const char* treename, helios::vec3 origin, float theta = 1e-5; phi = getVariation(2.f*M_PI); + uint base_splits = parameters.BaseSplits; + if( base_splits > 0 && parameters.BaseSplitsV > 0 ) + base_splits += static_cast(round(getVariation(parameters.BaseSplitsV))); + + float base_split_size = parameters.BaseSplitSize; + if( base_split_size > 0 && parameters.BaseSplitSizeV > 0 ) + base_split_size += getVariation(parameters.BaseSplitSizeV); + + float base_size = parameters.BaseSize; + if( base_size > 0 && parameters.BaseSizeV > 0 ) + base_size += getVariation(parameters.BaseSizeV); + //Region above trunk base - if( parameters.BaseSplits > 0 ){ //trunk splits at base + if( base_splits > 0 ){ //trunk splits at base - dlength0 = length0*(1.f-parameters.BaseSplitSize)/float(parameters.nCurveRes.at(0)); + dlength0 = length0*(1.f-base_split_size)/float(parameters.nCurveRes.at(0)); // Length of trunk base float base0; - if( parameters.BaseSplits > 0 ){ - base0 = parameters.BaseSplitSize; + if( base_splits > 0 ){ + base0 = base_split_size; }else{ - base0 = parameters.BaseSize; + base0 = base_size; } for( uint i=1; i0 && Zplus>=parameters.BaseSize ){ + if( parameters.Levels>0 && Zplus>=base_size ){ for( uint s=0; s0 ){ - recursiveBranch( parameters, 1, 0, base_position, current_normal, child_rotation, length0, radius_parent, offset_child, origin, scale, ID_leaf_template ); + recursiveBranch( parameters, 1, 0, base_position, current_normal, child_rotation, length0, radius_parent, offset_child, origin, scale, ID_leaf_template, base_size, base_splits ); } } @@ -326,7 +338,7 @@ uint WeberPennTree::buildTree( const char* treename, helios::vec3 origin, float } -void WeberPennTree::recursiveBranch( WeberPennTreeParameters parameters, uint n, uint seg_start, helios::vec3 base_position, helios::vec3 parent_normal, helios::SphericalCoord child_rotation, float length_parent, float radius_parent, float offset_child, helios::vec3 origin, float scale, const uint leaf_template ){ +void WeberPennTree::recursiveBranch( WeberPennTreeParameters parameters, uint n, uint seg_start, helios::vec3 base_position, helios::vec3 parent_normal, helios::SphericalCoord child_rotation, float length_parent, float radius_parent, float offset_child, helios::vec3 origin, float scale, const uint leaf_template, float base_size, uint base_splits ){ if( n 0 && n==0 && base_position.z 0 && n==0 && base_position.z0 34 25 20 20 plugins/weberpenntree/leaves/AlmondLeaf.png - 0.12 + 0.1 0.25 plugins/weberpenntree/wood/wood2.jpg + 0.05 + 2 + 0.1 + 2.5 + 0.05 + 5 3 + 0.1 + + + \ No newline at end of file diff --git a/samples/canopygenerator_vineyard/main.cpp b/samples/canopygenerator_vineyard/main.cpp new file mode 100644 index 000000000..8e13e9d7c --- /dev/null +++ b/samples/canopygenerator_vineyard/main.cpp @@ -0,0 +1,83 @@ +/** + * The goal of this sample project is to demonstrate how to build vine stocks based on parameters defined in a configuration file. + * First we build a fully configured canopy (multiple straight rows of plants), then we build an individual vine stock, and finally we use the flexibility of + * individual plant generation to build a circle arc of vine stocks. + */ + +#include "CanopyGenerator.h" +#include "Visualizer.h" + +using namespace helios; + +#define CONFIG_DIR "../config/" +#define VINE_CONFIG_FILE_NAME "vine.xml" + +int main() +{ + Context context; + CanopyGenerator canopy_generator(&context); + + /** + * Build the plants + */ + + /* Seed the random number generators */ + unsigned seed = std::chrono::system_clock::now().time_since_epoch().count(); + context.seedRandomGenerator(seed); + canopy_generator.seedRandomGenerator(seed); + + /* Read the vine config file and build the canopy + Each set of parameters written in the file will be stored in our CanopyGenerator. Whenever we call CanopyGenerator::buildIndividualPlants() or + CanopyGenerator::buildCanopies(), an instance of a single plant or a whole canopy will be built for each set of parameters that is stored. */ + const char *vine_config_file_path = CONFIG_DIR VINE_CONFIG_FILE_NAME; + canopy_generator.loadXML(vine_config_file_path, true); + + /* Build an individual plant based on the same parameters */ + vec3 vine_stock_position = make_vec3(-7.5, -10, 0); + // This builds only one plant if only one set of parameters is configured + canopy_generator.buildIndividualPlants(vine_stock_position); + + /* Build an arc of plants based on the same parameters */ + // Number of vine stocks + int num_plants = 8; + vec3 circle_center = make_vec3(7.5, 6, 0); + float circle_radius = 6; + // Total angle coverage of the plants arc + float total_arc_angle = 160; + // Angle difference between each plant + float angle_diff_between_plants = total_arc_angle / num_plants; + // The vine parameters. Here we assume there is at least one set of parameters, and we get the last one. + BaseCanopyParameters *params = canopy_generator.getCanopyParametersList().back().get(); + for (int plant_index = 0; plant_index < num_plants; plant_index++) { + float angle = deg2rad(plant_index * angle_diff_between_plants); + // We modify the parameters here, but beware because they will be saved, overwriting the ones read from the config file + params->canopy_rotation = angle + deg2rad(90); + vec3 plant_position = make_vec3(circle_center.x + circle_radius * cos(angle), circle_center.y + circle_radius * sin(angle), circle_center.z); + canopy_generator.buildIndividualPlants(plant_position); + } + + /** + * Build the ground + */ + + vec3 origin(0, 0, 0); + vec2 extent(30, 30); + int2 num_tiles(6, 3); + int2 subpatches(4, 4); + canopy_generator.buildGround(origin, extent, num_tiles, subpatches, "plugins/canopygenerator/textures/dirt.jpg"); + + /** + * Set the Visualizer + */ + + SphericalCoord sun_dir; + sun_dir = make_SphericalCoord(20 * M_PI / 180.f, 205 * M_PI / 180.f); + + Visualizer vis(1000); + vis.setLightDirection(sphere2cart(sun_dir)); + vis.setLightingModel(Visualizer::LIGHTING_PHONG_SHADOWED); + vis.buildContextGeometry(&context); + vis.plotInteractive(); + + return EXIT_SUCCESS; +} diff --git a/samples/weberpenntree_orchard/CMakeLists.txt b/samples/weberpenntree_orchard/CMakeLists.txt new file mode 100755 index 000000000..3fea444ae --- /dev/null +++ b/samples/weberpenntree_orchard/CMakeLists.txt @@ -0,0 +1,21 @@ +# Helios standard CMakeLists.txt file version 1.9 +cmake_minimum_required(VERSION 3.15) +project(helios) + +#-------- USER INPUTS ---------# + +#provide the path to Helios base directory, either as an absolut path or a path relative to the location of this file +set( BASE_DIRECTORY "../.." ) + +#define the name of the executable to be created +set( EXECUTABLE_NAME "weberpenntree_orchard" ) + +#provide name of source file(s) (separate multiple file names with semicolon) +set( SOURCE_FILES "main.cpp" ) + +#specify which plug-ins to use (separate plug-in names with semicolon) +set( PLUGINS "weberpenntree;visualizer;" ) + + +#-------- DO NOT MODIFY ---------# +include( "${BASE_DIRECTORY}/core/CMake_project.txt" ) \ No newline at end of file diff --git a/samples/weberpenntree_orchard/config/tree.xml b/samples/weberpenntree_orchard/config/tree.xml new file mode 100644 index 000000000..c3da46a06 --- /dev/null +++ b/samples/weberpenntree_orchard/config/tree.xml @@ -0,0 +1,43 @@ + + + + + 1 + 0.4 + 0.1 + 3 + 2 + 0.4 + 0.1 + 2 + 0.5 + 2 + 0.5 + 0.03 + 1. + 7 + 0.1 + 0 + 3 + 0 0 0 0 + 33 30 0 0 + 20 10 0 0 + 4 4 4 0 + -50 -60 -60 0 + 20 20 20 0 + 0 0 0 0 + 1 0.5 0.3 0 + 0 0.5 0.5 0 + 1 1 1 0 + 65 45 45 35 + 20 20 20 20 + 0 0 0 0 + 15 30 45 60 + 30 35 20 0 + 10 + plugins/weberpenntree/leaves/OliveLeaf.png + 0.08 + 0.1 + plugins/weberpenntree/wood/wood.jpg + + \ No newline at end of file diff --git a/samples/weberpenntree_orchard/main.cpp b/samples/weberpenntree_orchard/main.cpp new file mode 100644 index 000000000..afa498440 --- /dev/null +++ b/samples/weberpenntree_orchard/main.cpp @@ -0,0 +1,65 @@ +#include "WeberPennTree.h" +#include "Visualizer.h" + +using namespace helios; + +const char *config_file_path = "../config/tree.xml"; +const char *custom_tree_label = "CustomOlive"; + +/* Orchard parameters */ + +int num_rows = 4; +float row_spacing = 2.5; +float row_spacing_spread = 0.05; +int num_trees_per_row = 10; +float tree_spacing = 1.5; +float tree_spacing_spread = 0.3; + +int main(int argc, char *argv[]) +{ + Context context; + WeberPennTree weberpenntree(&context); + + // Seed the random number generators + unsigned seed = std::chrono::system_clock::now().time_since_epoch().count(); + context.seedRandomGenerator(seed); + weberpenntree.seedRandomGenerator(seed); + + /* Load the config file to read the tree geometry parameters */ + weberpenntree.loadXML(config_file_path); + + /* Build the orchard */ + for (int row_index = 0; row_index < num_rows; row_index++) { + for (int tree_index = 0; tree_index < num_trees_per_row; tree_index++) { + vec3 tree_position = make_vec3(tree_index * tree_spacing + context.randu(-tree_spacing_spread, tree_spacing_spread), row_index * row_spacing + context.randu(-row_spacing_spread, row_spacing_spread), 0); + /* uint id = */weberpenntree.buildTree(custom_tree_label, tree_position); + } + } + + + /* Set the Visualizer */ + + Visualizer vis(1000); + // Direction of the sun + SphericalCoord sun_dir; + sun_dir = make_SphericalCoord(20 * M_PI / 180.f, 205 * M_PI / 180.f); + vis.setLightDirection(sphere2cart(sun_dir)); + vis.setLightingModel(Visualizer::LIGHTING_PHONG_SHADOWED); + + // Get the context domain bounding coordinates + helios::vec2 x_bounds; + helios::vec2 y_bounds; + helios::vec2 z_bounds; + context.getDomainBoundingBox(x_bounds, y_bounds, z_bounds); + float x_range = x_bounds.y - x_bounds.x; + float y_range = y_bounds.y - y_bounds.x; + + vec3 origin(x_bounds.x + x_range / 2, y_bounds.x + y_range / 2, 0); + + vis.addSkyDomeByCenter(max(std::vector(x_range * 4, y_range * 4)), origin, 30, "plugins/visualizer/textures/SkyDome_clouds.jpg"); + + vis.buildContextGeometry(&context); + vis.plotInteractive(); + + return EXIT_SUCCESS; +}
DependenciesNone