create_figure.py
: Added--fontsize
,--height
,--width
and--legend
options.create_figure.py
: Repositioned legend for consistency (moved to bottom right) and removed its frame.run_ID16S.pl
: Added plot options.run_ID16S.pl
: Now generates a log file (ID16S.log
)run_ID16S.pl
: Added--replot
options => skips everything but plots (useful to replot/tweak figures)
Updated release that fixes various issues
run_ID16S.pl
: now generates distribution plots automatically.create_figure.py
: now italicizes names properly depending on taxonomic ranks + svg font are now editabledownload_ID16S_dbs.pl
: the NCBI datasets command line now matches its current release ## Tested with NCBI datasets v.16.17.3generate_database.pl
: now creates a timestamp + minor fixes.setup_ID16S.pl
: fixed subdirs paths- Updated the prebuilt normalization database to May 30th 2024.
taxon_links.tsv.gz
is now compressed to save space. - Simplified the README
- Minor code cleanup