Add time/memory benchmark for maisi #2625
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: premerge-notebooks | |
| on: | |
| # quick tests of modified notebooks for every pull request | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| concurrency: | |
| # automatically cancel the previously triggered workflows when there's a newer version | |
| group: build-gpu-${{ github.event.pull_request.number || github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| build: | |
| if: github.repository == 'Project-MONAI/tutorials' | |
| container: | |
| image: nvcr.io/nvidia/pytorch:24.02-py3 | |
| options: --gpus all --ipc host | |
| runs-on: [self-hosted, linux, x64] | |
| steps: | |
| - name: Install MONAI | |
| id: monai-install | |
| run: | | |
| which python | |
| nvidia-smi | |
| rm -rf ../../MONAI/MONAI | |
| python -m pip install --upgrade pip wheel | |
| pip uninstall -y monai | |
| pip uninstall -y monai | |
| pip uninstall -y monai-weekly | |
| pip uninstall -y monai-weekly # make sure there's no existing installation | |
| BUILD_MONAI=0 python -m pip install git+https://github.com/Project-MONAI/MONAI#egg=MONAI | |
| python -m pip install -r https://raw.githubusercontent.com/Project-MONAI/MONAI/dev/requirements-dev.txt | |
| python -m pip install -U torch torchvision torchaudio | |
| - uses: actions/checkout@v3 | |
| - name: Notebook quick check | |
| shell: bash | |
| run: | | |
| git config --global --add safe.directory /__w/tutorials/tutorials | |
| git fetch origin main | |
| python -m pip install -r requirements.txt; python -m pip list | |
| python -c "import monai; monai.config.print_debug_info()" | |
| export CUDA_VISIBLE_DEVICES=0 | |
| git diff --name-only origin/main | while read line; do if [[ $line == *.ipynb ]]; then ./runner.sh -p " -and -wholename './${line}'"; fi; done; | |
| # [[ $line == *.ipynb ]] && ./runner.sh --file "$line" |