.pre-commit-config.yaml

exclude: "LICENSE*|repo_data/"

repos:
- repo: https://github.com/pre-commit/pre-commit-hooks
  rev: v5.0.0
  hooks:
  - id: trailing-whitespace
  - id: end-of-file-fixer
  - id: debug-statements
  - id: mixed-line-ending
  - id: check-added-large-files
    args: ['--maxkb=10000']

- repo: https://github.com/macisamuele/language-formatters-pre-commit-hooks
  rev: v2.14.0
  hooks:
  - id: pretty-format-yaml
    args: [--autofix, --indent, "2", --preserve-quotes]

- repo: https://github.com/asottile/add-trailing-comma
  rev: v3.1.0
  hooks:
  - id: add-trailing-comma

- repo: https://github.com/asottile/pyupgrade
  rev: v3.19.1
  hooks:
  - id: pyupgrade
    args: [--py39-plus]

- repo: https://github.com/aflc/pre-commit-jupyter
  rev: v1.2.1
  hooks:
  - id: jupyter-notebook-cleanup
    exclude: examples/solve-on-remote.ipynb

- repo: https://github.com/snakemake/snakefmt
  rev: v0.10.2
  hooks:
  - id: snakefmt

- repo: https://github.com/keewis/blackdoc
  rev: v0.3.9
  hooks:
  - id: blackdoc

- repo: https://github.com/astral-sh/ruff-pre-commit
  rev: v0.1.4  # Check for the latest version
  hooks:
  - id: ruff
    args: ["--config=pyproject.toml", "--fix"]
  - id: ruff-format
    args: ["--config=pyproject.toml"]