From 42defe72ff678fe3d094312f2136c6eac155d521 Mon Sep 17 00:00:00 2001
From: Ben Straub <ben.x.straub@gsk.com>
Date: Thu, 29 Feb 2024 16:19:25 -0500
Subject: [PATCH] Update r-cmd-check.yml

---
 .github/workflows/r-cmd-check.yml | 81 +++++++++----------------------
 1 file changed, 22 insertions(+), 59 deletions(-)

diff --git a/.github/workflows/r-cmd-check.yml b/.github/workflows/r-cmd-check.yml
index 565b3a3..d0b582a 100644
--- a/.github/workflows/r-cmd-check.yml
+++ b/.github/workflows/r-cmd-check.yml
@@ -1,16 +1,16 @@
-# For help debugging build failures open an issue on the RStudio community with the 'github-actions' tag.
-# https://community.rstudio.com/new-topic?category=Package%20development&tags=github-actions
+# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
+# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
+#
+# NOTE: This workflow is overkill for most R packages and
+# check-standard.yaml is likely a better choice.
+# usethis::use_github_action("check-standard") will install it.
 on:
   push:
-    branches:
-      - main
-      - devel
+    branches: [main, master]
   pull_request:
-    branches:
-      - main
-      - devel
+    branches: [main, master]
 
-name: R CMD Check
+name: R-CMD-check
 
 jobs:
   R-CMD-check:
@@ -22,66 +22,29 @@ jobs:
       fail-fast: false
       matrix:
         config:
-          - {os: windows-latest, r: '4.2', repos: 'https://packagemanager.posit.co/cran/2022-12-14/'}
-          - {os: ubuntu-20.04, r: '4.2', repos: 'https://packagemanager.posit.co/cran/2022-12-14/'}
-
+          # use 4.1 to check with rtools40's older compiler
+          - {os: windows-latest, r: '4.2'}
+          - {os: ubuntu-latest,   r: 'release'}
     env:
-      REPOS: ${{ matrix.config.repos }}
-      R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
-      RSPM: ${{ matrix.config.rspm }}
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+      R_KEEP_PKG_SOURCE: yes
 
     steps:
       - uses: actions/checkout@v3
 
+      - uses: r-lib/actions/setup-pandoc@v2
+
       - uses: r-lib/actions/setup-r@v2
         with:
           r-version: ${{ matrix.config.r }}
+          http-user-agent: ${{ matrix.config.http-user-agent }}
+          use-public-rspm: true
 
-      - uses: r-lib/actions/setup-pandoc@v2
-
-      - name: Query dependencies
-        run: |
-          install.packages('remotes')
-          saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2)
-          writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version")
-        shell: Rscript {0}
-
-      - name: Restore R package cache
-        if: runner.os != 'Windows'
-        uses: actions/cache@v2
+      - uses: r-lib/actions/setup-r-dependencies@v2
         with:
-          path: ${{ env.R_LIBS_USER }}
-          key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }}
-          restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-
-
-      - name: Install system dependencies
-        if: runner.os == 'Linux'
-        run: |
-          while read -r cmd
-          do
-            eval sudo $cmd
-          done < <(Rscript -e 'writeLines(remotes::system_requirements("ubuntu", "20.04"))')
-      - name: Install dependencies
-        run: |
-          repos <- Sys.getenv("REPOS")
-          if (repos != "") options(repos = repos)
-          remotes::install_deps(dependencies = TRUE)
-          remotes::install_cran("rcmdcheck")
-          devtools::install_github("pharmaverse/envsetup")
-        shell: Rscript {0}
-
-      - name: Check
-        env:
-          _R_CHECK_CRAN_INCOMING_REMOTE_: false
-        run: |
-          options(crayon.enabled = TRUE)
-          rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran"), error_on = "warning", check_dir = "check")
-        shell: Rscript {0}
+          extra-packages: any::rcmdcheck
+          needs: check
 
-      - name: Upload check results
-        if: failure()
-        uses: actions/upload-artifact@main
+      - uses: r-lib/actions/check-r-package@v2
         with:
-          name: ${{ runner.os }}-r${{ matrix.config.r }}-results
-          path: check
+          upload-snapshots: true