mkdocs.yml

site_name: AuriClass
site_url: https://rivm-bioinformatics.github.io/AuriClass
repo_url: https://github.com/rivm-bioinformatics/auriclass/
repo_name: rivm-bioinformatics/auriclass
edit_uri: ""

nav:
  - Home: index.md
  - Usage:
    - Installation: installation.md
    - Running an analysis: running_analysis.md
    - Input & output: input_output.md
    - Reference genomes: reference_genomes.md
    - Full usage: full_usage.md
  - Methodology: methodology.md
  - Reference documentation: reference.md
  - FAQ: faq.md
  - Changelog: changelog.md

# Basic config theming config settings
theme:
  name: material
  language: en

plugins:
- search
- mkdocstrings
- mike
- table-reader

markdown_extensions:
  - pymdownx.highlight:
      anchor_linenums: true
      line_spans: __span
      pygments_lang_class: true
  - pymdownx.inlinehilite
  - pymdownx.snippets
  - pymdownx.superfences:
      custom_fences:
        - name: mermaid
          class: mermaid
          format: !!python/name:pymdownx.superfences.fence_code_format
  - admonition
  - pymdownx.details
  - tables

# version provider integrated with Material theme
extra:
  version:
    provider: mike