Changelog

0.1.3 (2023-07-12)

Dependencies

removing anaconda and defaults channel and adding no defaults (efb7784)

0.1.2 (2023-02-16)

Bug Fixes

Pin juno-library version (18c8584)

0.1.1 (2023-01-09)

Features

Support external clustering flag of popPUNK. (60a8eb0)

Bug Fixes

Add base_juno to master environment (e8a06a6)
Correct the config lookup in aggregatePoppunkCsv rule (e3365f8)

0.1.0 (2022-11-16)

Features

Add --species to run_pipeline.sh. Fix: Correct input type from both to fasta. (4a2594b)
added --species and --database arguments and use these to set correct poppunk db_dir (6e6c95c)
Create first version of rule for Q-file (e1a6d4d)
Create hardcoded version of popPUNK rule (131de03)
Create summary rule. (0f3e219)

Bug Fixes

Add default species "other" in run_pipeline.sh (931882c)
Correctly handle --queue argument. (7f0833a)
Specify juno-library version (5b64764)