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sorted(glob.glob(pathOfFinalResults+"/*_raw.gff"), key=os.path.getmtime): command = module_dir+"/sort_gff.py " + f + " " + args.processName +"."+ f.split("_raw")[0][-1] + " " + str(args.organismType) + " " + str(args.rename) args1 = shlex.split(command) sort_gff = Popen(args1, cwd=pathOfFinalResults, stdout=open('geneChecker.log', 'a'), stderr=open('geneChecker_erreur.log', 'a')) @@ -1536,7 +1536,7 @@ if __name__ == "__main__": shutil.copy(f+"_AA.fasta",pathOfFinalResults+"/"+args.processName+"_final_genes_AA.fasta") shutil.copy(f+"_NT.fasta",pathOfFinalResults+"/"+args.processName+"_final_genes_NT.fasta") if c > 1 and args.numt == 0: - for f in glob.glob(pathOfFinalResults+"/*_genes_NT.fasta"): + for f in sorted(glob.glob(pathOfFinalResults+"/*_genes_NT.fasta"), key=os.path.getmtime): for name, seq in read_fasta(open(f,'r')): gene=name.split("@")[1] if dico_genes.has_key(gene): @@ -1561,7 +1561,7 @@ if __name__ == "__main__": final_fasta.close() dico_genes={} - for f in 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