diff --git a/README.md b/README.md index 9786dc8..dfaebf4 100755 --- a/README.md +++ b/README.md @@ -519,7 +519,7 @@ Depending on the proximity of your reference, you can play with the following pa ## Using entrez-direct utilities 1. Install entrez-direct utilities (instructions [here](https://www.ncbi.nlm.nih.gov/books/NBK179288/), or using `conda -c bioconda entrez-direct`) -2. Use the following in a shell to batch download all mitochondrial genomes associated with Lepidoptera: +2. Use the following in a shell to batch download all mitochondrial genomes associated with Carnivora: ```sh taxa=Carnivora esearch -db nuccore -query "\"mitochondrion\"[All Fields] AND (\"${taxa}\"[Organism]) AND (refseq[filter] AND mitochondrion[filter] AND (\"12000\"[SLEN] : \"20000\"[SLEN]))" | efetch -format gbwithparts > reference.gb