diff --git a/README.md b/README.md index 80cf3f2..acf80b3 100755 --- a/README.md +++ b/README.md @@ -43,8 +43,11 @@ Before starting, MitoFinder installation requires ```automake``` and ```autoconf sudo apt-get install automake autoconf ``` -If you want to use MiTFi for the tRNA annotation step (recommended), ```java``` needs to be installed. To install it : ```sudo apt install default-jre``` +If you want to use MiTFi for the tRNA annotation step (recommended), ```java``` needs to be installed. Here is the command to install it: +```shell +sudo apt install default-jre +``` Clone mitofinder from [GitHub](https://github.com/RemiAllio/MitoFinder) @@ -169,6 +172,7 @@ To our knowledge, IDBA-UD is not supported for Mac OS at the moment. ### tRNA annotation - **[MiTFi](https://academic.oup.com/nar/article/40/7/2833/1184754)** and **[tRNAscan-SE](https://link.springer.com/protocol/10.1007%2F978-1-4939-9173-0_1)** should be installed by MitoFinder when running the install.sh. + However, **MiTFi** requires ```java``` to be installed. If ```java``` is not installed, you can download the .dmg file to install it [here](https://www.oracle.com/java/technologies/javase-downloads.html). - **[ARWEN](https://academic.oup.com/bioinformatics/article/24/2/172/228155)**