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Traceback (most recent call last):
File "/opt/MitoFinder/mitofinder", line 574, in
featureName = ''.join(featureName.split())
NameError: name 'featureName' is not defined
The text was updated successfully, but these errors were encountered:
Unfortunately, this file needs some edits to be usable by MitoFinder.
I can make these edits but otherwise, the easiest way to use MitoFinder on your sample might be to use this reference instead.
Also, since you are using HiFi reads, I would recommend to perform the assembly before using MitoFinder (with a dedicated software) and give the assembly to MitoFinder using the -aoption.
This is the command I have used to run for fungal genomes
singularity run mitofinder_v1.4.1.sif -j A5_mito -s A5_HiFi_reads.fastq -r Rhizophagus_irregularis_DAOM197198_mtDNA.gb -o 1 -p 5 -m 10
I am getting following error
Command line: /opt/MitoFinder/mitofinder -j A5_mito -s A5_HiFi_reads.fastq -r Rhizophagus_irregularis_DAOM197198_mtDNA.gb -o 1 -p 5 -m 10
Now running MitoFinder ...
Start time : 2023-07-31 16:01:30
Job name = A5_mito
Creating Output directory : /home/eniac/A5_mito
All results will be written here
Program folders:
MEGAHIT = /opt/MitoFinder/megahit/
MetaSPAdes folder = /opt/MitoFinder/metaspades/bin/
IDBA-UD folder = /opt/MitoFinder/idba/bin/
Blast folder = /opt/MitoFinder/blast/bin/
ARWEN folder = /opt/MitoFinder/arwen/
MiTFi folder = /opt/MitoFinder/mitfi/
tRNAscan-SE folder = /opt/MitoFinder/trnascanSE/tRNAscan-SE-2.0/
Traceback (most recent call last):
File "/opt/MitoFinder/mitofinder", line 574, in
featureName = ''.join(featureName.split())
NameError: name 'featureName' is not defined
The text was updated successfully, but these errors were encountered: