diff --git a/change_log.md b/change_log.md
index 37969f8..6603e86 100644
--- a/change_log.md
+++ b/change_log.md
@@ -1,3 +1,6 @@
+# 0.3.3 (github, pypi and conda 20200424)
+* added capability to set_value_labels to handle subset of dataframes, solves #58
+
# 0.3.2 (github, pypi and conda 20200422)
* fixed bug when writing string columns with missing values (#54 and #55)
diff --git a/docs/_build/doctrees/environment.pickle b/docs/_build/doctrees/environment.pickle
index 4559d7f..fef4b88 100644
Binary files a/docs/_build/doctrees/environment.pickle and b/docs/_build/doctrees/environment.pickle differ
diff --git a/docs/_build/html/.buildinfo b/docs/_build/html/.buildinfo
index 5fa2f6a..ba35eb2 100644
--- a/docs/_build/html/.buildinfo
+++ b/docs/_build/html/.buildinfo
@@ -1,4 +1,4 @@
# Sphinx build info version 1
# This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: 3c3bb2a4bec2d6479578309a09db4796
+config: e5aad791b428aec4c4ae13c2e09050db
tags: 645f666f9bcd5a90fca523b33c5a78b7
diff --git a/docs/_build/html/_static/documentation_options.js b/docs/_build/html/_static/documentation_options.js
index 591d9f4..b7bd83c 100644
--- a/docs/_build/html/_static/documentation_options.js
+++ b/docs/_build/html/_static/documentation_options.js
@@ -1,6 +1,6 @@
var DOCUMENTATION_OPTIONS = {
URL_ROOT: document.getElementById("documentation_options").getAttribute('data-url_root'),
- VERSION: '0.3.2',
+ VERSION: '0.3.3',
LANGUAGE: 'None',
COLLAPSE_INDEX: false,
BUILDER: 'html',
diff --git a/docs/_build/html/genindex.html b/docs/_build/html/genindex.html
index 139c749..b3312c3 100644
--- a/docs/_build/html/genindex.html
+++ b/docs/_build/html/genindex.html
@@ -9,7 +9,7 @@
- Index — pyreadstat 0.3.2 documentation
+ Index — pyreadstat 0.3.3 documentation
diff --git a/docs/_build/html/index.html b/docs/_build/html/index.html
index 1d4b4e3..a9040c6 100644
--- a/docs/_build/html/index.html
+++ b/docs/_build/html/index.html
@@ -8,7 +8,7 @@
- Welcome to pyreadstat’s documentation! — pyreadstat 0.3.2 documentation
+ Welcome to pyreadstat’s documentation! — pyreadstat 0.3.3 documentation
diff --git a/docs/_build/html/py-modindex.html b/docs/_build/html/py-modindex.html
index c1e11e7..de16072 100644
--- a/docs/_build/html/py-modindex.html
+++ b/docs/_build/html/py-modindex.html
@@ -8,7 +8,7 @@
- Python Module Index — pyreadstat 0.3.2 documentation
+ Python Module Index — pyreadstat 0.3.3 documentation
diff --git a/docs/_build/html/search.html b/docs/_build/html/search.html
index c4e0746..f330bc4 100644
--- a/docs/_build/html/search.html
+++ b/docs/_build/html/search.html
@@ -8,7 +8,7 @@
- Search — pyreadstat 0.3.2 documentation
+ Search — pyreadstat 0.3.3 documentation
diff --git a/docs/conf.py b/docs/conf.py
index 26a5c69..49c723e 100644
--- a/docs/conf.py
+++ b/docs/conf.py
@@ -26,7 +26,7 @@
# The short X.Y version
version = ''
# The full version, including alpha/beta/rc tags
-release = '0.3.2'
+release = '0.3.3'
# -- General configuration ---------------------------------------------------
diff --git a/pyreadstat/__init__.py b/pyreadstat/__init__.py
index d259466..920f6fa 100644
--- a/pyreadstat/__init__.py
+++ b/pyreadstat/__init__.py
@@ -20,4 +20,4 @@
from .pyreadstat import read_file_in_chunks
from ._readstat_parser import ReadstatError, metadata_container
-__version__ = "0.3.2"
+__version__ = "0.3.3"
diff --git a/pyreadstat/_readstat_writer.c b/pyreadstat/_readstat_writer.c
index 42ffc49..e89e443 100644
--- a/pyreadstat/_readstat_writer.c
+++ b/pyreadstat/_readstat_writer.c
@@ -8232,6 +8232,7 @@ static int __pyx_f_10pyreadstat_16_readstat_writer_run_write(PyObject *__pyx_v_d
PyObject *__pyx_v_file_label_bytes = 0;
char *__pyx_v_file_labl;
PyObject *__pyx_v_col_names = 0;
+ PyObject *__pyx_v_variable_name = NULL;
PyObject *__pyx_v_col_types = 0;
int __pyx_v_row_count;
int __pyx_v_col_count;
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PyObject *__pyx_v_table_name_bytes = NULL;
char *__pyx_v_tab_name;
CYTHON_UNUSED PyObject *__pyx_v__ = NULL;
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PyObject *__pyx_v_labelset_name = NULL;
PyObject *__pyx_v_curuser_missing = NULL;
PyObject *__pyx_v_cur_ranges = NULL;
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* cdef list col_names = df.columns.values.tolist() # <<<<<<<<<<<<<<
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__pyx_v_col_names = ((PyObject*)__pyx_t_2);
__pyx_t_2 = 0;
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*/
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*/
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*/
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*/
}
- /* "pyreadstat/_readstat_writer.pyx":663
+ /* "pyreadstat/_readstat_writer.pyx":667
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*/
}
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}
}
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switch (__pyx_v_file_format) {
case __pyx_e_10pyreadstat_16_readstat_writer_FILE_FORMAT_SAS7BCAT:
- /* "pyreadstat/_readstat_writer.pyx":670
+ /* "pyreadstat/_readstat_writer.pyx":674
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break;
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- /* "pyreadstat/_readstat_writer.pyx":672
+ /* "pyreadstat/_readstat_writer.pyx":676
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break;
case __pyx_e_10pyreadstat_16_readstat_writer_FILE_FORMAT_SAV:
- /* "pyreadstat/_readstat_writer.pyx":674
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- /* "pyreadstat/_readstat_writer.pyx":673
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@@ -10575,16 +10608,16 @@ static int __pyx_f_10pyreadstat_16_readstat_writer_run_write(PyObject *__pyx_v_d
break;
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- /* "pyreadstat/_readstat_writer.pyx":676
+ /* "pyreadstat/_readstat_writer.pyx":680
* check_exit_status(readstat_begin_writing_sav(writer, &fd, row_count))
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+ __pyx_f_10pyreadstat_16_readstat_parser_check_exit_status(readstat_begin_writing_por(__pyx_v_writer, (&__pyx_v_fd), __pyx_v_row_count)); if (unlikely(PyErr_Occurred())) __PYX_ERR(0, 680, __pyx_L37_error)
- /* "pyreadstat/_readstat_writer.pyx":675
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break;
case __pyx_e_10pyreadstat_16_readstat_writer_FILE_FORMAT_SAS7BDAT:
- /* "pyreadstat/_readstat_writer.pyx":678
+ /* "pyreadstat/_readstat_writer.pyx":682
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__Pyx_ExceptionReset(__pyx_t_14, __pyx_t_15, __pyx_t_16);
- goto __pyx_L31_error;
- __pyx_L38_try_end:;
+ goto __pyx_L35_error;
+ __pyx_L42_try_end:;
}
}
- /* "pyreadstat/_readstat_writer.pyx":740
+ /* "pyreadstat/_readstat_writer.pyx":744
* raise
* finally:
* readstat_writer_free(writer) # <<<<<<<<<<<<<<
@@ -11436,7 +11469,7 @@ static int __pyx_f_10pyreadstat_16_readstat_writer_run_write(PyObject *__pyx_v_d
/*normal exit:*/{
readstat_writer_free(__pyx_v_writer);
- /* "pyreadstat/_readstat_writer.pyx":741
+ /* "pyreadstat/_readstat_writer.pyx":745
* finally:
* readstat_writer_free(writer)
* close_file(fd) # <<<<<<<<<<<<<<
@@ -11444,9 +11477,9 @@ static int __pyx_f_10pyreadstat_16_readstat_writer_run_write(PyObject *__pyx_v_d
* return 0
*/
(void)(__pyx_f_10pyreadstat_16_readstat_writer_close_file(__pyx_v_fd));
- goto __pyx_L32;
+ goto __pyx_L36;
}
- __pyx_L31_error:;
+ __pyx_L35_error:;
/*exception exit:*/{
__Pyx_PyThreadState_declare
__Pyx_PyThreadState_assign
@@ -11468,7 +11501,7 @@ static int __pyx_f_10pyreadstat_16_readstat_writer_run_write(PyObject *__pyx_v_d
__pyx_t_19 = __pyx_lineno; __pyx_t_20 = __pyx_clineno; __pyx_t_33 = __pyx_filename;
{
- /* "pyreadstat/_readstat_writer.pyx":740
+ /* "pyreadstat/_readstat_writer.pyx":744
* raise
* finally:
* readstat_writer_free(writer) # <<<<<<<<<<<<<<
@@ -11477,7 +11510,7 @@ static int __pyx_f_10pyreadstat_16_readstat_writer_run_write(PyObject *__pyx_v_d
*/
readstat_writer_free(__pyx_v_writer);
- /* "pyreadstat/_readstat_writer.pyx":741
+ /* "pyreadstat/_readstat_writer.pyx":745
* finally:
* readstat_writer_free(writer)
* close_file(fd) # <<<<<<<<<<<<<<
@@ -11500,10 +11533,10 @@ static int __pyx_f_10pyreadstat_16_readstat_writer_run_write(PyObject *__pyx_v_d
__pyx_lineno = __pyx_t_19; __pyx_clineno = __pyx_t_20; __pyx_filename = __pyx_t_33;
goto __pyx_L1_error;
}
- __pyx_L32:;
+ __pyx_L36:;
}
- /* "pyreadstat/_readstat_writer.pyx":743
+ /* "pyreadstat/_readstat_writer.pyx":747
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*
* return 0 # <<<<<<<<<<<<<<
@@ -11539,6 +11572,7 @@ static int __pyx_f_10pyreadstat_16_readstat_writer_run_write(PyObject *__pyx_v_d
__Pyx_XDECREF(__pyx_v_val);
__Pyx_XDECREF(__pyx_v_file_label_bytes);
__Pyx_XDECREF(__pyx_v_col_names);
+ __Pyx_XDECREF(__pyx_v_variable_name);
__Pyx_XDECREF(__pyx_v_col_types);
__Pyx_XDECREF(__pyx_v_col_names_to_types);
__Pyx_XDECREF(__pyx_v_cur_col_label);
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__Pyx_XDECREF(__pyx_v_value_labels);
__Pyx_XDECREF(__pyx_v_table_name_bytes);
__Pyx_XDECREF(__pyx_v__);
- __Pyx_XDECREF(__pyx_v_variable_name);
__Pyx_XDECREF(__pyx_v_labelset_name);
__Pyx_XDECREF(__pyx_v_curuser_missing);
__Pyx_XDECREF(__pyx_v_cur_ranges);
diff --git a/pyreadstat/_readstat_writer.pyx b/pyreadstat/_readstat_writer.pyx
index 8f7e2f2..8894958 100644
--- a/pyreadstat/_readstat_writer.pyx
+++ b/pyreadstat/_readstat_writer.pyx
@@ -557,8 +557,16 @@ cdef int run_write(df, str filename_path, dst_file_format file_format, str file_
cdef char *file_labl
cdef list col_names = df.columns.values.tolist()
+
+ for variable_name in col_names:
+ if type(variable_name) != str:
+ raise PyreadstatError("variable name %s is of type %s and it must be str (not starting with numbers!)" % (variable_name, str(type(variable_name))))
+ if not variable_name[0].isalpha():
+ raise PyreadstatError("variable name %s starts with an illegal (non-alphabetic) character" % variable_name)
+
if file_format == FILE_FORMAT_POR:
col_names = [x.upper() for x in col_names]
+
cdef list col_types = get_pandas_column_types(df, missing_user_values)
cdef int row_count = len(df)
cdef int col_count = len(col_names)
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#if file_format == FILE_FORMAT_XPORT and curtype == PYWRITER_DOUBLE:
# max_length = 8
variable_name = col_names[col_indx]
- if type(variable_name) != str:
- raise PyreadstatError("variable name %s is of type %s and it must be str (not starting with numbers!)" % (variable_name, str(type(variable_name))))
- if not variable_name[0].isalpha():
- raise PyreadstatError("variable name %s starts with an illegal (non-alphabetic) character" % variable_name)
variable = readstat_add_variable(writer, variable_name.encode("utf-8"), pandas_to_readstat_types[curtype], max_length)
if curtype in pyrwriter_datetimelike_types:
curformat = get_datetimelike_format_for_readstat(file_format, curtype)
diff --git a/pyreadstat/pyreadstat.c b/pyreadstat/pyreadstat.c
index dea3b4d..2932d35 100644
--- a/pyreadstat/pyreadstat.c
+++ b/pyreadstat/pyreadstat.c
@@ -1028,7 +1028,7 @@ struct __pyx_obj_10pyreadstat_10pyreadstat___pyx_scope_struct__set_value_labels
};
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/* PyObjectCall2Args.proto */
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+/* PySequenceContains.proto */
+static CYTHON_INLINE int __Pyx_PySequence_ContainsTF(PyObject* item, PyObject* seq, int eq) {
+ int result = PySequence_Contains(seq, item);
+ return unlikely(result < 0) ? result : (result == (eq == Py_EQ));
+}
+
/* GetItemInt.proto */
#define __Pyx_GetItemInt(o, i, type, is_signed, to_py_func, is_list, wraparound, boundscheck)\
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static const char __pyx_k_maxrow[] = "maxrow";
static const char __pyx_k_offset[] = "offset";
static const char __pyx_k_catalog[] = "catalog";
+static const char __pyx_k_columns[] = "columns";
static const char __pyx_k_df_copy[] = "df_copy";
static const char __pyx_k_usecols[] = "usecols";
static const char __pyx_k_usernan[] = "usernan";
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static PyObject *__pyx_n_s_cline_in_traceback;
static PyObject *__pyx_n_s_close;
static PyObject *__pyx_n_s_column_labels;
+static PyObject *__pyx_n_s_columns;
static PyObject *__pyx_n_s_compress;
static PyObject *__pyx_n_s_copy;
static PyObject *__pyx_n_s_current_labels;
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return __pyx_r;
}
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- * labels = metadata.value_labels.get(label_name)
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- * if formats_as_category:
- * df_copy[var_name] = df_copy[var_name].astype("category")
+ * if var_name in df_copy.columns:
+ * df_copy[var_name] = df_copy[var_name].apply(lambda x: labels.get(x, x)) # <<<<<<<<<<<<<<
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CYTHON_FALLTHROUGH;
case 2:
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switch (__pyx_v_version) {
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break;
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__Pyx_INCREF(Py_None);
__pyx_v_variable_alignment = ((PyObject*)Py_None);
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__Pyx_INCREF(Py_None);
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return __pyx_r;
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- __Pyx_RaiseArgtupleInvalid("write_xport", 0, 2, 5, PyTuple_GET_SIZE(__pyx_args)); __PYX_ERR(0, 687, __pyx_L3_error)
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__Pyx_INCREF(Py_None);
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__Pyx_INCREF(Py_None);
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return __pyx_r;
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case 2:
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- __Pyx_RaiseArgtupleInvalid("write_por", 0, 2, 4, PyTuple_GET_SIZE(__pyx_args)); __PYX_ERR(0, 723, __pyx_L3_error)
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__pyx_L3_error:;
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__pyx_r = __pyx_pf_10pyreadstat_10pyreadstat_25write_por(__pyx_self, __pyx_v_df, __pyx_v_dst_path, __pyx_v_file_label, __pyx_v_column_labels);
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__Pyx_INCREF(Py_None);
__pyx_v_note = ((PyObject*)Py_None);
- /* "pyreadstat/pyreadstat.pyx":742
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__Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
- /* "pyreadstat/pyreadstat.pyx":530
+ /* "pyreadstat/pyreadstat.pyx":531
* # convenience functions to read in chunks
*
* def read_file_in_chunks(read_function, file_path, chunksize=100000, offset=0, limit=0, **kwargs): # <<<<<<<<<<<<<<
* """
* Returns a generator that will allow to read a file in chunks.
*/
- __pyx_t_2 = PyCFunction_NewEx(&__pyx_mdef_10pyreadstat_10pyreadstat_17read_file_in_chunks, NULL, __pyx_n_s_pyreadstat_pyreadstat); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 530, __pyx_L1_error)
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- if (PyDict_SetItem(__pyx_d, __pyx_n_s_read_file_in_chunks, __pyx_t_2) < 0) __PYX_ERR(0, 530, __pyx_L1_error)
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__Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
- /* "pyreadstat/pyreadstat.pyx":581
+ /* "pyreadstat/pyreadstat.pyx":582
* # Write API
*
* def write_sav(df, str dst_path, str file_label="", list column_labels=None, compress=False, str note=None, # <<<<<<<<<<<<<<
* dict variable_value_labels=None, dict missing_ranges=None, dict variable_display_width=None,
* dict variable_measure=None):
*/
- __pyx_t_2 = PyCFunction_NewEx(&__pyx_mdef_10pyreadstat_10pyreadstat_20write_sav, NULL, __pyx_n_s_pyreadstat_pyreadstat); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 581, __pyx_L1_error)
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- if (PyDict_SetItem(__pyx_d, __pyx_n_s_write_sav, __pyx_t_2) < 0) __PYX_ERR(0, 581, __pyx_L1_error)
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- /* "pyreadstat/pyreadstat.pyx":633
+ /* "pyreadstat/pyreadstat.pyx":634
* variable_alignment, variable_display_width, variable_measure)
*
* def write_dta(df, str dst_path, str file_label="", list column_labels=None, int version=15, # <<<<<<<<<<<<<<
* dict variable_value_labels=None, dict missing_user_values=None):
* """
*/
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- /* "pyreadstat/pyreadstat.pyx":687
+ /* "pyreadstat/pyreadstat.pyx":688
* variable_display_width, variable_measure)
*
* def write_xport(df, str dst_path, str file_label="", list column_labels=None, str table_name=None): # <<<<<<<<<<<<<<
* """
* Writes a pandas data frame to a SAS Xport (xpt) file.
*/
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- /* "pyreadstat/pyreadstat.pyx":723
+ /* "pyreadstat/pyreadstat.pyx":724
* variable_alignment,variable_display_width, variable_measure)
*
* def write_por(df, str dst_path, str file_label="", list column_labels=None): # <<<<<<<<<<<<<<
* """
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/* "pyreadstat/pyreadstat.pyx":1
diff --git a/pyreadstat/pyreadstat.pyx b/pyreadstat/pyreadstat.pyx
index a4dd575..1ff5606 100644
--- a/pyreadstat/pyreadstat.pyx
+++ b/pyreadstat/pyreadstat.pyx
@@ -474,9 +474,10 @@ def set_value_labels(dataframe, metadata, formats_as_category=True):
for var_name, label_name in metadata.variable_to_label.items():
labels = metadata.value_labels.get(label_name)
if labels:
- df_copy[var_name] = df_copy[var_name].apply(lambda x: labels.get(x, x))
- if formats_as_category:
- df_copy[var_name] = df_copy[var_name].astype("category")
+ if var_name in df_copy.columns:
+ df_copy[var_name] = df_copy[var_name].apply(lambda x: labels.get(x, x))
+ if formats_as_category:
+ df_copy[var_name] = df_copy[var_name].astype("category")
return df_copy
diff --git a/setup.py b/setup.py
index abff85e..68b59e8 100644
--- a/setup.py
+++ b/setup.py
@@ -136,7 +136,7 @@
setup(
name='pyreadstat',
- version='0.3.2',
+ version='0.3.3',
description=short_description,
author="Otto Fajardo",
author_email="pleasecontactviagithub@notvalid.com",
diff --git a/tests/test_basic.py b/tests/test_basic.py
index 7c01683..a91b395 100644
--- a/tests/test_basic.py
+++ b/tests/test_basic.py
@@ -800,6 +800,18 @@ def test_dta_write_charnan(self):
df2['object'] = df2['object'].astype(str)
self.assertTrue(df2.equals(df))
+ def test_set_value_labels(self):
+
+ df, meta = pyreadstat.read_sav(os.path.join(self.basic_data_folder, "sample.sav"))
+ df_formatted = pyreadstat.set_value_labels(df, meta, formats_as_category=True)
+ #df.columns = self.df_pandas_formatted.columns
+ self.assertTrue(df_formatted.equals(self.df_pandas_formatted))
+ # partial
+ sub1_raw = df[['myord']]
+ sub1 = pyreadstat.set_value_labels(sub1_raw, meta, formats_as_category=True)
+ sub2 = self.df_pandas_formatted[['myord']]
+ self.assertTrue(sub1.equals(sub2))
+
if __name__ == '__main__':
import sys