The contig input #144
markobabic333
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I found out the problem myself, but Im gonna leave the solution here so someone can find it. I guess developers never thought someone was going to generate a sequence using the 'fab' command in PyMol without specifying the chain ID. |
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Can someone please help me understand the contig input syntax because its fairly confusing.
On the bottom of the Google Colab notebook there are instructions:
and
Now, my small peptide doesnt contain chain IDs, so I tried putting in "4-8" and 3/4-8/3. The program responds by writing out the following:
Processing 3, first part is 3
Processing 4-8, first part is 4
Processing 3, first part is 3
mode: free
output: outputs/test_ouret
contigs: ['3-3/8-8/3-3']
or
Processing 4-8, first part is 4
mode: free
output: outputs/test_uhkxk
contigs: ['5-5']
What am I doing wrong? Why is the code interpreting me wanting to keep sequence residues 4 through 8 as wanting to either keep 8-8 or 5-5?
This isnt even the final result I want from this. Im just testing out to understand the syntax better.
I uploaded a 11 amino acid peptide and I want it to keep residues 4, 6 and 8 intact, while changing the other residues to keep 4, 6 and 8 in the same geometric positions. And I'm really struggling on how to do that.
Please, any help would be greatly appreciated.
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