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For 2.8.0, I needed to change the PLUS and MINUS states to Plus and Minus (see changes) to avoid these errors.
Error log:
You are trying to give a pattern of type 'Sen', but you gave an
invalid state! The state you gave was: 'PLUS'. Quitting now.
You are trying to give a pattern of type 'Sen', but you gave an
invalid state! The state you gave was: 'MINUS'. Quitting now.
ABORT: /opt/BioNetGen-2.8.0/bin/NFsim -xml ./Dolan2015_nf_run1.xml -o ./Dolan2015_nf_run1.gdat -sim 100 -oSteps 100 -cb -ss ./Dolan2015_nf_run1.species -v -gml 1000000000 did not run successfully.
I'm post this here in case this wasn't an intentional change.
The text was updated successfully, but these errors were encountered:
I don't get this error running bionetgen 2.8.0 on a mac.
For reference here's the output of bionetgen info
BNG version: 2.8.0
BNG2.pl path: /Users/faeder/opt/anaconda3/envs/py39/lib/python3.9/site-packages/bionetgen/bng-mac (the main executable for BNG)
Perl version: 5.30.3 (used to run BNG2.pl)
CLI version: 0 7 2 alpha 0
pyBNG path: /Users/faeder/opt/anaconda3/envs/py39/lib/python3.9/site-packages/bionetgen (the PyBNG installation)
The following libraries are required by PyBioNetGen:
numpy version: 1.22.3
pandas version: 1.3.4
libRoadRunner version: 2.2.0
Example: https://github.com/biosimulators/Biosimulators_test_suite/blob/0.1.84/examples/bngl/Dolan-PLoS-Comput-Biol-2015-NHEJ/Dolan2015.bngl
PLUS
andMINUS
states toPlus
andMinus
(see changes) to avoid these errors.I'm post this here in case this wasn't an intentional change.
The text was updated successfully, but these errors were encountered: