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Hi!
I currently try to run "Functional testing" in example.rst. But, I got an error after caluculation of psr.
My environment is WSL working on windows. And, I installed pyJac using conda.
I think it is caused from installation of Adept. I installed Adept using command shown in README on Adept github repository.
Does anyone know the way to solve this issue?
~/github/pyJac$ python -m pyjac.functional_tester --mech data/h2o2.cti --lang c --pasr_output h2_pasr_output.npy /usr/bin/gcc User specified last species not found or not specified. Attempting to find a default species Warning: Neither a user specified or default last species could be found. Proceeding using the last species in the base mechanism: N2 User specified last species not found or not specified. Attempting to find a default species Warning: Neither a user specified or default last species could be found. Proceeding using the last species in the base mechanism: N2 gcc -std=c99 -O3 -mtune=native -fPIC -I/home/syoukera/github/pyJac/out -I/usr/local/include/ -c /home/syoukera/github/pyJac/out/chem_utils.c -o /home/syoukera/github/pyJac/obj/chem_utils.o gcc -std=c99 -O3 -mtune=native -fPIC -I/home/syoukera/github/pyJac/out -I/usr/local/include/ -c /home/syoukera/github/pyJac/out/dydt.c -o /home/syoukera/github/pyJac/obj/dydt.o gcc -std=c99 -O3 -mtune=native -fPIC -I/home/syoukera/github/pyJac/out -I/usr/local/include/ -c /home/syoukera/github/pyJac/out/spec_rates.c -o /home/syoukera/github/pyJac/obj/spec_rates.o gcc -std=c99 -O3 -mtune=native -fPIC -I/home/syoukera/github/pyJac/out -I/usr/local/include/ -c /home/syoukera/github/pyJac/out/rxn_rates.c -o /home/syoukera/github/pyJac/obj/rxn_rates.o gcc -std=c99 -O3 -mtune=native -fPIC -I/home/syoukera/github/pyJac/out -I/usr/local/include/ -c /home/syoukera/github/pyJac/out/mechanism.c -o /home/syoukera/github/pyJac/obj/mechanism.o gcc -std=c99 -O3 -mtune=native -fPIC -I/home/syoukera/github/pyJac/out -I/usr/local/include/ -c /home/syoukera/github/pyJac/out/mass_mole.c -o /home/syoukera/github/pyJac/obj/mass_mole.o gcc -std=c99 -O3 -mtune=native -fPIC -I/home/syoukera/github/pyJac/out -I/usr/local/include/ -c /home/syoukera/github/pyJac/out/rxn_rates_pres_mod.c -o /home/syoukera/github/pyJac/obj/rxn_rates_pres_mod.o gcc -std=c99 -O3 -mtune=native -fPIC -I/home/syoukera/github/pyJac/out -I/usr/local/include/ -c /home/syoukera/github/pyJac/out/jacob.c -o /home/syoukera/github/pyJac/obj/jacob.o ar rcs /home/syoukera/github/pyJac/build/temp.linux-x86_64-3.6/libc_pyjac.a /home/syoukera/github/pyJac/obj/chem_utils.o /home/syoukera/github/pyJac/obj/dydt.o /home/syoukera/github/pyJac/obj/spec_rates.o /home/syoukera/github/pyJac/obj/rxn_rates.o /home/syoukera/github/pyJac/obj/mechanism.o /home/syoukera/github/pyJac/obj/mass_mole.o /home/syoukera/github/pyJac/obj/rxn_rates_pres_mod.o /home/syoukera/github/pyJac/obj/jacob.o running build_ext skipping '/home/syoukera/github/pyJac/pyjac/pywrap/pyjacob_wrapper.c' Cython extension (up-to-date) g++ -O3 -mtune=native -fPIC -I/home/syoukera/github/pyJac/out -I/usr/local/include/ -c /home/syoukera/github/pyJac/out/ad_dydt.c -o /home/syoukera/github/pyJac/obj/ad_dydt.o g++ -O3 -mtune=native -fPIC -I/home/syoukera/github/pyJac/out -I/usr/local/include/ -c /home/syoukera/github/pyJac/out/ad_rxn_rates.c -o /home/syoukera/github/pyJac/obj/ad_rxn_rates.o g++ -O3 -mtune=native -fPIC -I/home/syoukera/github/pyJac/out -I/usr/local/include/ -c /home/syoukera/github/pyJac/out/ad_spec_rates.c -o /home/syoukera/github/pyJac/obj/ad_spec_rates.o g++ -O3 -mtune=native -fPIC -I/home/syoukera/github/pyJac/out -I/usr/local/include/ -c /home/syoukera/github/pyJac/out/ad_chem_utils.c -o /home/syoukera/github/pyJac/obj/ad_chem_utils.o g++ -O3 -mtune=native -fPIC -I/home/syoukera/github/pyJac/out -I/usr/local/include/ -c /home/syoukera/github/pyJac/out/ad_jac.c -o /home/syoukera/github/pyJac/obj/ad_jac.o g++ -O3 -mtune=native -fPIC -I/home/syoukera/github/pyJac/out -I/usr/local/include/ -c /home/syoukera/github/pyJac/out/ad_rxn_rates_pres_mod.c -o /home/syoukera/github/pyJac/obj/ad_rxn_rates_pres_mod.o ar rcs /home/syoukera/github/pyJac/build/temp.linux-x86_64-3.6/libad_pyjac.a /home/syoukera/github/pyJac/obj/ad_dydt.o /home/syoukera/github/pyJac/obj/ad_rxn_rates.o /home/syoukera/github/pyJac/obj/ad_spec_rates.o /home/syoukera/github/pyJac/obj/ad_chem_utils.o /home/syoukera/github/pyJac/obj/ad_jac.o /home/syoukera/github/pyJac/obj/ad_rxn_rates_pres_mod.o running build_ext skipping '/home/syoukera/github/pyJac/pyjac/pywrap/adjacob_wrapper.cpp' Cython extension (up-to-date) Could not load saved pasr data... re-running /home/syoukera/github/pyJac/pyjac/functional_tester/partially_stirred_reactor.py:967: YAMLLoadWarning: calling yaml.load() without Loader=... is deprecated, as the default Loader is unsafe. Please read https://msg.pyyaml.org/load for full details. pars = yaml.load(f) Time [ms] Temperature [K] 0.00 2387.6 0.10 2387.6 0.20 2387.6 0.30 2387.6 0.40 2387.6 0.50 2387.6 0.60 2187.7 0.70 2026.3 0.80 2064.9 0.90 2324.2 1.00 2351.7 1.10 2357.3 1.20 2366.3 1.30 2375.8 1.40 2378.8 1.50 2381.3 1.60 2182.9 1.70 2024.6 1.80 2064.1 1.90 2323.5 2.00 2351.3 2.10 2364.3 2.20 2371.2 2.30 2375.2 2.40 2378.4 2.50 2380.5 2.60 2182.9 2.70 2024.9 2.80 2064.4 2.90 2323.8 3.00 2351.5 3.10 2357.1 3.20 2366.1 3.30 2375.7 3.40 2378.8 3.50 2378.6 3.60 2180.8 3.70 2023.1 3.80 2063.0 3.90 2278.1 4.00 2329.2 4.10 2360.2 4.20 2368.3 4.30 2374.5 4.40 2377.9 4.50 2378.0 4.60 2183.0 4.70 2025.0 4.80 2064.4 4.90 2282.2 5.00 2331.0 5.10 2361.7 5.20 2369.4 5.30 2375.1 5.40 2378.3 5.50 2378.3 5.60 2182.6 5.70 2022.9 5.80 2062.5 5.90 2322.4 6.00 2350.4 6.10 2363.8 6.20 2370.8 6.30 2370.7 6.40 2375.1 6.50 2380.7 6.60 2185.0 6.70 2024.9 6.80 2064.0 6.90 2310.9 7.00 2343.7 7.10 2363.3 7.20 2370.5 7.30 2375.7 7.40 2378.8 7.50 2381.2 7.60 2185.4 7.70 2025.4 7.80 2064.6 7.90 2324.0 8.00 2351.6 8.10 2364.7 8.20 2371.5 8.30 2373.8 8.40 2377.3 8.50 2380.9 8.60 2182.5 8.70 2024.4 8.80 2064.0 8.90 2323.2 9.00 2351.0 9.10 2353.5 9.20 2363.8 9.30 2370.6 9.40 2375.0 9.50 2378.3 9.60 2380.6 9.70 2383.6 9.80 2384.5 9.90 2384.5 10.00 2385.2 10.00 2385.8 Traceback (most recent call last): File "/home/syoukera/miniconda3/envs/pyjac/lib/python3.6/runpy.py", line 193, in _run_module_as_main "__main__", mod_spec) File "/home/syoukera/miniconda3/envs/pyjac/lib/python3.6/runpy.py", line 85, in _run_code exec(code, run_globals) File "/home/syoukera/github/pyJac/pyjac/functional_tester/__main__.py", line 110, in <module> args.do_not_remove, args.condition_numbers File "/home/syoukera/github/pyJac/pyjac/functional_tester/test.py", line 1294, in test ajac = AutodiffJacob(pres, pyjacob.fwd_spec_map) File "/home/syoukera/github/pyJac/pyjac/functional_tester/test.py", line 193, in __init__ import adjacob ImportError: libadept.so.0: cannot open shared object file: No such file or directory
The text was updated successfully, but these errors were encountered:
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Hi!
I currently try to run "Functional testing" in example.rst.
But, I got an error after caluculation of psr.
My environment is WSL working on windows.
And, I installed pyJac using conda.
I think it is caused from installation of Adept.
I installed Adept using command shown in README on Adept github repository.
Does anyone know the way to solve this issue?
The text was updated successfully, but these errors were encountered: